AlfalfaGEDB | MS.gene21336

M. sativa cultivar XinJiangDaYe / MS.gene21336

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18 PF04434.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21336.t1	RHN81205.1	70.3	718	40	1	1	545	14	731	1.10E-270	942.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21336.t1	Q9SWG3	34.1	299	184	5	146	439	392	682	1.1e-40	169.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21336.t1	A0A396JYX6	70.3	718	40	1	1	545	14	731	7.8e-271	942.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene21336.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene21336	0.843721	1.18E-58	-1.69E-46
MS.gene049159	MS.gene21336	0.809668	1.69E-50	-1.69E-46
MS.gene049254	MS.gene21336	0.848576	5.61E-60	-1.69E-46
MS.gene049343	MS.gene21336	0.811917	5.51E-51	-1.69E-46
MS.gene049350	MS.gene21336	0.803377	3.59E-49	-1.69E-46
MS.gene049368	MS.gene21336	0.82826	9.93E-55	-1.69E-46
MS.gene049499	MS.gene21336	0.80578	1.13E-49	-1.69E-46
MS.gene049850	MS.gene21336	0.806722	7.17E-50	-1.69E-46
MS.gene049983	MS.gene21336	0.812041	5.18E-51	-1.69E-46
MS.gene050559	MS.gene21336	0.82238	2.44E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21336.t1	MTR_2g090105	44.318	176	77	4	383	542	16	186	3.24e-31	120
MS.gene21336.t1	MTR_7g446060	48.193	83	43	0	61	143	2	84	1.48e-18	82.8
MS.gene21336.t1	MTR_7g031620	57.971	69	29	0	2	70	14	82	4.47e-17	76.6
MS.gene21336.t1	MTR_8g465780	29.412	136	94	2	177	310	1	136	5.30e-11	62.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21336.t1	AT4G15090	34.114	299	184	5	146	439	392	682	6.48e-46	173
MS.gene21336.t1	AT4G15090	34.114	299	184	5	146	439	392	682	6.48e-46	173
MS.gene21336.t1	AT4G15090	34.114	299	184	5	146	439	392	682	6.48e-46	173
MS.gene21336.t1	AT4G15090	34.114	299	184	5	146	439	392	682	6.48e-46	173
MS.gene21336.t1	AT4G15090	34.114	299	184	5	146	439	392	682	6.48e-46	173
MS.gene21336.t1	AT1G52520	37.931	232	136	5	145	371	411	639	4.51e-43	164
MS.gene21336.t1	AT3G22170	37.281	228	136	2	146	373	401	621	3.58e-42	162
MS.gene21336.t1	AT3G22170	37.281	228	136	2	146	373	401	621	3.58e-42	162
MS.gene21336.t1	AT4G38180	35.294	221	135	3	151	370	421	634	2.44e-38	150
MS.gene21336.t1	AT4G19990	35.622	233	143	3	144	375	338	564	1.42e-36	145

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Find 92 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGAAAATTAAAGACG+TGG	0.683650	1.4:+71229187	MS.gene21336:CDS
AAACGATCAAAGTCAAGAAG+AGG	0.583429	1.4:+71229727	MS.gene21336:CDS
AAAGTGATTTCATGGAGAGG+TGG	0.559223	1.4:+71228724	MS.gene21336:CDS
AAATTCTTTAAATTTGGCAA+TGG	0.528148	1.4:-71229069	None:intergenic
AACTTGGTCAAACCAGAGGA+CGG	0.650612	1.4:+71227989	MS.gene21336:CDS
AAGTGATTTCATGGAGAGGT+GGG	0.523064	1.4:+71228725	MS.gene21336:CDS
AATCCTGGAGGAAGGCTCTT+TGG	0.358296	1.4:-71229537	None:intergenic
AATCGAAAAGGAAAGCATGG+CGG	0.726163	1.4:+71228971	MS.gene21336:CDS
AATGCTTGTGTAGCTTTAGA+TGG	0.358270	1.4:+71227925	MS.gene21336:CDS
AATGTGTCTTTCACATACAC+AGG	0.609838	1.4:-71228825	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTAAAGACGTGGTGTTTA+AGG	+	chr1.4:71229196-71229215	MS.gene21336:CDS	30.0%
AGAATTGCAACGTGTTAATA+TGG	+	chr1.4:71229412-71229431	MS.gene21336:CDS	30.0%
AGCAATGAAAAATGCAATTG+AGG	+	chr1.4:71228566-71228585	MS.gene21336:intron	30.0%
AGTAGAAGCAACTTCATAAA+AGG	-	chr1.4:71229447-71229466	None:intergenic	30.0%
AGTTCAAAAAATGCAGATGA+TGG	+	chr1.4:71227793-71227812	MS.gene21336:CDS	30.0%
ATAAAATAGTCTGACCATGA+TGG	-	chr1.4:71228431-71228450	None:intergenic	30.0%
ATTTACAGAAAGTGATGAAC+AGG	+	chr1.4:71229486-71229505	MS.gene21336:CDS	30.0%
CAATGGATATGGATGATAAA+AGG	+	chr1.4:71228271-71228290	MS.gene21336:intron	30.0%
CGTGGCAAAATATAAAAAGA+CGG	-	chr1.4:71229341-71229360	None:intergenic	30.0%
TAAAATCGAAAAGGAAAGCA+TGG	+	chr1.4:71228968-71228987	MS.gene21336:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	71227751	71230188	71227751	ID=MS.gene21336
chr1.4	mRNA	71227751	71230188	71227751	ID=MS.gene21336.t1;Parent=MS.gene21336
chr1.4	exon	71227751	71228179	71227751	ID=MS.gene21336.t1.exon1;Parent=MS.gene21336.t1
chr1.4	CDS	71227751	71228179	71227751	ID=cds.MS.gene21336.t1;Parent=MS.gene21336.t1
chr1.4	exon	71228699	71229748	71228699	ID=MS.gene21336.t1.exon2;Parent=MS.gene21336.t1
chr1.4	CDS	71228699	71229748	71228699	ID=cds.MS.gene21336.t1;Parent=MS.gene21336.t1
chr1.4	exon	71229858	71229923	71229858	ID=MS.gene21336.t1.exon3;Parent=MS.gene21336.t1
chr1.4	CDS	71229858	71229923	71229858	ID=cds.MS.gene21336.t1;Parent=MS.gene21336.t1
chr1.4	exon	71230010	71230066	71230010	ID=MS.gene21336.t1.exon4;Parent=MS.gene21336.t1
chr1.4	CDS	71230010	71230066	71230010	ID=cds.MS.gene21336.t1;Parent=MS.gene21336.t1
chr1.4	exon	71230153	71230188	71230153	ID=MS.gene21336.t1.exon5;Parent=MS.gene21336.t1
chr1.4	CDS	71230153	71230188	71230153	ID=cds.MS.gene21336.t1;Parent=MS.gene21336.t1

Gene Sequence

>MS.gene21336

ATGAATTACGCTAATCGTGTAGGTTTTGGAGTTACAAAAATAAGTTCAAAAAATGCAGATGATGGAAAGAAGTATTTTACTCTAGCATGTAATTGTGCAAGAAGGTATGTGAGTACTTCGAAAAATCCTTCGAAGCAATATCTTACCTCGAAAACACAGTGTAGGGCTAGGTTGAATGCTTGTGTAGCTTTAGATGGATCGAGTACCATTTCAAGAATTGTTATTGAACATAATCATGAACTTGGTCAAACCAGAGGACGGTATTTTAGATTGGATGAGAGTTCGGGGCCTCCTGTAGATAGGAATTTAGAACTTAATGATCAAGGTGGGATTAATGTTGGTAGAAATCTTCAATCTGTGGGTGTTGAGATGAATGGGTGTGGGAATCTTACTTCTGGAGAAAATGATTGTAGAAATTCTGTGCAGAAAGTAAGACGGCTAAGACTTGGGAGAGGAGATGTTGATGCAATTCATAGCTTTTTTCATAGAATGCAAAAGCAAAATAGTCAATTTTACTGTGCAATGGATATGGATGATAAAAGGAATATACAAAATTTATTTTGGGCAGATGCGAGATGTAGGGCTGCATATGAATATTTTGGTGAAGTCATAACTTTGGATACCACTTATTTAACAAATAAGTATGACTTGCCATTGGTCCCCTTTGTTGGAGTGAACCATCATGGTCAGACTATTTTATTGGGGTGTGCAATATTGTCGAACGTGGATGCTAAAACTCTTACTTGGTTGTTCACAAGATGGTTAGAATGTATGCATGGACATGCTCCAAATGGCATAATTACCGAAGATGATAAAGCAATGAAAAATGCAATTGAGGTTGCCTTTCCTAAAGCTCGTCATCGATGGTGCTTGTGGCATATAATGAAGAAGGTTCCAGAAATGTTGGGTAAATACTCTCGTAATGAGTCTATCAAAACACTTTTGCAGGATGTGGTATATGACTCTCTGAGCAAAAGTGATTTCATGGAGAGGTGGGGAAATATGATAGAACATTATAACCTACATGATAATGAATGGTTAAAATGGTTATTTGATGAGCGGCACCGTTGGGTTCCTGTGTATGTGAAAGACACATTTTGGGCTGGAATGTCGACTGCACAACGGAATGAAAGTATAGACTCATTTTTTGATGGGTATGTTAACTCAAAGACAACATTGAAGCGGTTTGTGGAACAGTATGACGATGCATTGAATGATAAAATCGAAAAGGAAAGCATGGCGGATTTTGATTCATTTAACTCAACAATTGCTTGTGTGAGTCATTTTGGCTTTGAAGTCCATTTCCAGAAAGCATTTACCATTGCCAAATTTAAAGAATTTCAAGTAGAGGTCTCTTCTATGATGTATTGTAATACTAGCTTTGAAAGATTGGAGGACTTGAATTCTATATTCTCTGTTACTGAAAATAAGAAAGTAAAAGAGAAAATTAAAGACGTGGTGTTTAAGGTATCTTTCAATGAAAAGGACTTCAAATTGCAGTGCACGTGTTGCTTATTTGAGTTTAAAGGAATTTTATGTAGACACATTCTTTGTGTGCTTAAGCTCATTGGCAAAACAGATTCAATGCCGTCTTTTTATATTTTGCCACGGTGGAGGAAGTATGTAAAGCGGAGATATACATTGATGAAACATGGTTTTGAAGAATTGCAACGTGTTAATATGGCATGTGATGCCTTTTATGAAGTTGCTTCTACTATGATAAATTCTGAAGATGATTTACAGAAAGTGATGAACAGGATCAAGGACTTGAAAACCGTGTTATCTTCCAAAGAGCCTTCCTCCAGGATTACACAAGAACATACTTCAACTCAAAACCACGTGACTAGGATTGTTGATCCAACAGTAACTCTCAGTAATGGGCATCCTCTTTCAAAAAGGAAGACATCTAATGTTGATCAAATTTTAAAGAAGAAGCTTGCAAGACACAAAACTCCAAAGAACAGCAAGGAAAATAAAAACGATCAAAGTCAAGAAGAGGTGATCTTGAAATCCACAAATTTATTTTCTCGATTTAAACACAAGACTTATGCGCGCACGTGTGTGTTATAGCATAAATAAATGTCTGATTTTGGGTTTTTTATGGCAGGGCTCATTGTGTACACCTATTCTTCAAGAAACTGATGATGAAGAACATCTTAGTGATGTAAACCAGGTGATGAAAATATAGAACCTGGTGCTCTTTATTTTTATTTGAACATTTACATTGTGGAAATAACTGATAAAATATCTGTTTCGTAGGTTCCATATTGTCCTCAAATCATAAACCAGAATATTTCCTGTTCTGAACTTTTACAGGTATTTATTTGGTTATTTCTTGTGGTAACATGGTCAAATTTTAATATGAAATCAGTAATATTTTTGCCCATGTGTTCTTTTTGCAGGCACAACACCATAAGAATGATCAACCATCCTCATAA

Protein sequence

>MS.gene21336.t1

MNYANRVGFGVTKISSKNADDGKKYFTLACNCARRYVSTSKNPSKQYLTSKTQCRARLNACVALDGSSTISRIVIEHNHELGQTRGRYFRLDESSGPPVDRNLELNDQGGINVGRNLQSVGVEMNGCGNLTSGENDCRNSVQKDVVYDSLSKSDFMERWGNMIEHYNLHDNEWLKWLFDERHRWVPVYVKDTFWAGMSTAQRNESIDSFFDGYVNSKTTLKRFVEQYDDALNDKIEKESMADFDSFNSTIACVSHFGFEVHFQKAFTIAKFKEFQVEVSSMMYCNTSFERLEDLNSIFSVTENKKVKEKIKDVVFKVSFNEKDFKLQCTCCLFEFKGILCRHILCVLKLIGKTDSMPSFYILPRWRKYVKRRYTLMKHGFEELQRVNMACDAFYEVASTMINSEDDLQKVMNRIKDLKTVLSSKEPSSRITQEHTSTQNHVTRIVDPTVTLSNGHPLSKRKTSNVDQILKKKLARHKTPKNSKENKNDQSQEEGSLCTPILQETDDEEHLSDVNQVPYCPQIINQNISCSELLQAQHHKNDQPSS