Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21336.t1 | RHN81205.1 | 70.3 | 718 | 40 | 1 | 1 | 545 | 14 | 731 | 1.10E-270 | 942.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21336.t1 | Q9SWG3 | 34.1 | 299 | 184 | 5 | 146 | 439 | 392 | 682 | 1.1e-40 | 169.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21336.t1 | A0A396JYX6 | 70.3 | 718 | 40 | 1 | 1 | 545 | 14 | 731 | 7.8e-271 | 942.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene21336.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene21336 | 0.843721 | 1.18E-58 | -1.69E-46 |
| MS.gene049159 | MS.gene21336 | 0.809668 | 1.69E-50 | -1.69E-46 |
| MS.gene049254 | MS.gene21336 | 0.848576 | 5.61E-60 | -1.69E-46 |
| MS.gene049343 | MS.gene21336 | 0.811917 | 5.51E-51 | -1.69E-46 |
| MS.gene049350 | MS.gene21336 | 0.803377 | 3.59E-49 | -1.69E-46 |
| MS.gene049368 | MS.gene21336 | 0.82826 | 9.93E-55 | -1.69E-46 |
| MS.gene049499 | MS.gene21336 | 0.80578 | 1.13E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene21336 | 0.806722 | 7.17E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene21336 | 0.812041 | 5.18E-51 | -1.69E-46 |
| MS.gene050559 | MS.gene21336 | 0.82238 | 2.44E-53 | -1.69E-46 |
| MS.gene050561 | MS.gene21336 | 0.822015 | 2.97E-53 | -1.69E-46 |
| MS.gene050562 | MS.gene21336 | 0.81684 | 4.49E-52 | -1.69E-46 |
| MS.gene050799 | MS.gene21336 | 0.801516 | 8.68E-49 | -1.69E-46 |
| MS.gene051332 | MS.gene21336 | 0.838573 | 2.65E-57 | -1.69E-46 |
| MS.gene051744 | MS.gene21336 | 0.804397 | 2.20E-49 | -1.69E-46 |
| MS.gene052108 | MS.gene21336 | 0.809826 | 1.56E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene21336 | 0.803889 | 2.81E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene21336 | 0.834216 | 3.41E-56 | -1.69E-46 |
| MS.gene052518 | MS.gene21336 | 0.803527 | 3.34E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene21336 | 0.819896 | 9.13E-53 | -1.69E-46 |
| MS.gene052534 | MS.gene21336 | 0.810063 | 1.39E-50 | -1.69E-46 |
| MS.gene052773 | MS.gene21336 | 0.832698 | 8.15E-56 | -1.69E-46 |
| MS.gene052863 | MS.gene21336 | 0.81188 | 5.61E-51 | -1.69E-46 |
| MS.gene053079 | MS.gene21336 | 0.814734 | 1.33E-51 | -1.69E-46 |
| MS.gene05308 | MS.gene21336 | 0.801359 | 9.34E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene21336 | 0.818075 | 2.37E-52 | -1.69E-46 |
| MS.gene05350 | MS.gene21336 | 0.807246 | 5.55E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene21336 | 0.818797 | 1.63E-52 | -1.69E-46 |
| MS.gene05423 | MS.gene21336 | 0.818368 | 2.03E-52 | -1.69E-46 |
| MS.gene054479 | MS.gene21336 | 0.826379 | 2.80E-54 | -1.69E-46 |
| MS.gene05458 | MS.gene21336 | 0.840373 | 9.04E-58 | -1.69E-46 |
| MS.gene054651 | MS.gene21336 | 0.841981 | 3.42E-58 | -1.69E-46 |
| MS.gene054775 | MS.gene21336 | 0.823821 | 1.13E-53 | -1.69E-46 |
| MS.gene054991 | MS.gene21336 | 0.806128 | 9.56E-50 | -1.69E-46 |
| MS.gene055228 | MS.gene21336 | 0.813592 | 2.37E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene21336 | 0.806228 | 9.11E-50 | -1.69E-46 |
| MS.gene055586 | MS.gene21336 | 0.80586 | 1.09E-49 | -1.69E-46 |
| MS.gene055589 | MS.gene21336 | 0.801019 | 1.10E-48 | -1.69E-46 |
| MS.gene055818 | MS.gene21336 | 0.820625 | 6.22E-53 | -1.69E-46 |
| MS.gene055864 | MS.gene21336 | 0.808841 | 2.54E-50 | -1.69E-46 |
| MS.gene056045 | MS.gene21336 | 0.801974 | 6.99E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene21336 | 0.814484 | 1.50E-51 | -1.69E-46 |
| MS.gene056776 | MS.gene21336 | 0.82089 | 5.40E-53 | -1.69E-46 |
| MS.gene056779 | MS.gene21336 | 0.813654 | 2.29E-51 | -1.69E-46 |
| MS.gene05686 | MS.gene21336 | 0.813085 | 3.06E-51 | -1.69E-46 |
| MS.gene05690 | MS.gene21336 | 0.826481 | 2.65E-54 | -1.69E-46 |
| MS.gene057026 | MS.gene21336 | 0.829828 | 4.14E-55 | -1.69E-46 |
| MS.gene057034 | MS.gene21336 | 0.810877 | 9.26E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene21336 | 0.827227 | 1.76E-54 | -1.69E-46 |
| MS.gene057208 | MS.gene21336 | 0.849723 | 2.69E-60 | -1.69E-46 |
| MS.gene057598 | MS.gene21336 | 0.824506 | 7.78E-54 | -1.69E-46 |
| MS.gene057611 | MS.gene21336 | 0.814447 | 1.53E-51 | -1.69E-46 |
| MS.gene057855 | MS.gene21336 | 0.810148 | 1.33E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene21336 | 0.821704 | 3.50E-53 | -1.69E-46 |
| MS.gene058008 | MS.gene21336 | 0.800282 | 1.55E-48 | -1.69E-46 |
| MS.gene058355 | MS.gene21336 | 0.809343 | 1.98E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene21336 | 0.850769 | 1.37E-60 | -1.69E-46 |
| MS.gene058781 | MS.gene21336 | 0.803186 | 3.93E-49 | -1.69E-46 |
| MS.gene058783 | MS.gene21336 | 0.8037 | 3.08E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene21336 | 0.839164 | 1.87E-57 | -1.69E-46 |
| MS.gene05897 | MS.gene21336 | 0.808135 | 3.59E-50 | -1.69E-46 |
| MS.gene059283 | MS.gene21336 | 0.806586 | 7.66E-50 | -1.69E-46 |
| MS.gene059570 | MS.gene21336 | 0.824539 | 7.64E-54 | -1.69E-46 |
| MS.gene059625 | MS.gene21336 | 0.822166 | 2.74E-53 | -1.69E-46 |
| MS.gene05985 | MS.gene21336 | -0.801036 | 1.09E-48 | -1.69E-46 |
| MS.gene060435 | MS.gene21336 | 0.82746 | 1.55E-54 | -1.69E-46 |
| MS.gene060527 | MS.gene21336 | 0.813065 | 3.09E-51 | -1.69E-46 |
| MS.gene06052 | MS.gene21336 | 0.81577 | 7.80E-52 | -1.69E-46 |
| MS.gene060777 | MS.gene21336 | 0.824852 | 6.45E-54 | -1.69E-46 |
| MS.gene060933 | MS.gene21336 | 0.810658 | 1.03E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene21336 | 0.852035 | 6.01E-61 | -1.69E-46 |
| MS.gene060937 | MS.gene21336 | 0.851874 | 6.68E-61 | -1.69E-46 |
| MS.gene061188 | MS.gene21336 | 0.801513 | 8.69E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21336.t1 | MTR_2g090105 | 44.318 | 176 | 77 | 4 | 383 | 542 | 16 | 186 | 3.24e-31 | 120 |
| MS.gene21336.t1 | MTR_7g446060 | 48.193 | 83 | 43 | 0 | 61 | 143 | 2 | 84 | 1.48e-18 | 82.8 |
| MS.gene21336.t1 | MTR_7g031620 | 57.971 | 69 | 29 | 0 | 2 | 70 | 14 | 82 | 4.47e-17 | 76.6 |
| MS.gene21336.t1 | MTR_8g465780 | 29.412 | 136 | 94 | 2 | 177 | 310 | 1 | 136 | 5.30e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21336.t1 | AT4G15090 | 34.114 | 299 | 184 | 5 | 146 | 439 | 392 | 682 | 6.48e-46 | 173 |
| MS.gene21336.t1 | AT4G15090 | 34.114 | 299 | 184 | 5 | 146 | 439 | 392 | 682 | 6.48e-46 | 173 |
| MS.gene21336.t1 | AT4G15090 | 34.114 | 299 | 184 | 5 | 146 | 439 | 392 | 682 | 6.48e-46 | 173 |
| MS.gene21336.t1 | AT4G15090 | 34.114 | 299 | 184 | 5 | 146 | 439 | 392 | 682 | 6.48e-46 | 173 |
| MS.gene21336.t1 | AT4G15090 | 34.114 | 299 | 184 | 5 | 146 | 439 | 392 | 682 | 6.48e-46 | 173 |
| MS.gene21336.t1 | AT1G52520 | 37.931 | 232 | 136 | 5 | 145 | 371 | 411 | 639 | 4.51e-43 | 164 |
| MS.gene21336.t1 | AT3G22170 | 37.281 | 228 | 136 | 2 | 146 | 373 | 401 | 621 | 3.58e-42 | 162 |
| MS.gene21336.t1 | AT3G22170 | 37.281 | 228 | 136 | 2 | 146 | 373 | 401 | 621 | 3.58e-42 | 162 |
| MS.gene21336.t1 | AT4G38180 | 35.294 | 221 | 135 | 3 | 151 | 370 | 421 | 634 | 2.44e-38 | 150 |
| MS.gene21336.t1 | AT4G19990 | 35.622 | 233 | 143 | 3 | 144 | 375 | 338 | 564 | 1.42e-36 | 145 |
| MS.gene21336.t1 | AT4G19990 | 35.622 | 233 | 143 | 3 | 144 | 375 | 338 | 564 | 1.42e-36 | 145 |
| MS.gene21336.t1 | AT4G19990 | 35.622 | 233 | 143 | 3 | 144 | 375 | 281 | 507 | 1.99e-36 | 144 |
| MS.gene21336.t1 | AT4G19990 | 35.622 | 233 | 143 | 3 | 144 | 375 | 338 | 564 | 2.17e-36 | 144 |
| MS.gene21336.t1 | AT4G19990 | 35.622 | 233 | 143 | 3 | 144 | 375 | 338 | 564 | 2.17e-36 | 144 |
| MS.gene21336.t1 | AT4G19990 | 35.622 | 233 | 143 | 3 | 144 | 375 | 338 | 564 | 2.26e-36 | 144 |
| MS.gene21336.t1 | AT4G19990 | 35.622 | 233 | 143 | 3 | 144 | 375 | 352 | 578 | 2.94e-36 | 144 |
| MS.gene21336.t1 | AT1G76320 | 32.328 | 232 | 148 | 3 | 146 | 377 | 329 | 551 | 1.67e-33 | 135 |
| MS.gene21336.t1 | AT1G76320 | 32.328 | 232 | 148 | 3 | 146 | 377 | 329 | 551 | 1.67e-33 | 135 |
| MS.gene21336.t1 | AT1G76320 | 32.328 | 232 | 148 | 3 | 146 | 377 | 329 | 551 | 1.67e-33 | 135 |
| MS.gene21336.t1 | AT2G32250 | 34.685 | 222 | 138 | 2 | 146 | 367 | 336 | 550 | 3.50e-33 | 135 |
| MS.gene21336.t1 | AT2G32250 | 34.685 | 222 | 138 | 2 | 146 | 367 | 336 | 550 | 3.50e-33 | 135 |
| MS.gene21336.t1 | AT2G32250 | 34.685 | 222 | 138 | 2 | 146 | 367 | 336 | 550 | 3.50e-33 | 135 |
| MS.gene21336.t1 | AT2G32250 | 34.685 | 222 | 138 | 2 | 146 | 367 | 336 | 550 | 3.66e-33 | 135 |
| MS.gene21336.t1 | AT2G32250 | 34.685 | 222 | 138 | 2 | 146 | 367 | 336 | 550 | 3.66e-33 | 135 |
| MS.gene21336.t1 | AT2G32250 | 34.685 | 222 | 138 | 2 | 146 | 367 | 295 | 509 | 3.89e-33 | 135 |
| MS.gene21336.t1 | AT1G76320 | 32.328 | 232 | 148 | 3 | 146 | 377 | 329 | 551 | 4.12e-33 | 134 |
| MS.gene21336.t1 | AT2G32250 | 34.685 | 222 | 138 | 2 | 146 | 367 | 336 | 550 | 4.13e-33 | 134 |
| MS.gene21336.t1 | AT2G32250 | 34.685 | 222 | 138 | 2 | 146 | 367 | 295 | 509 | 4.61e-33 | 134 |
| MS.gene21336.t1 | AT4G38170 | 30.568 | 229 | 153 | 2 | 146 | 374 | 181 | 403 | 5.05e-33 | 133 |
| MS.gene21336.t1 | AT1G80010 | 33.906 | 233 | 148 | 5 | 145 | 374 | 436 | 665 | 1.47e-30 | 127 |
| MS.gene21336.t1 | AT2G27110 | 32.787 | 244 | 147 | 7 | 154 | 390 | 371 | 604 | 1.20e-29 | 124 |
| MS.gene21336.t1 | AT2G27110 | 32.787 | 244 | 147 | 7 | 154 | 390 | 371 | 604 | 1.20e-29 | 124 |
| MS.gene21336.t1 | AT2G27110 | 32.787 | 244 | 147 | 7 | 154 | 390 | 226 | 459 | 1.78e-29 | 123 |
| MS.gene21336.t1 | AT3G06250 | 31.120 | 241 | 152 | 7 | 129 | 367 | 473 | 701 | 3.57e-27 | 116 |
| MS.gene21336.t1 | AT3G06250 | 31.120 | 241 | 152 | 7 | 129 | 367 | 473 | 701 | 3.57e-27 | 116 |
| MS.gene21336.t1 | AT3G06250 | 31.120 | 241 | 152 | 7 | 129 | 367 | 473 | 701 | 3.57e-27 | 116 |
| MS.gene21336.t1 | AT5G18960 | 32.589 | 224 | 138 | 6 | 146 | 367 | 513 | 725 | 1.45e-26 | 115 |
| MS.gene21336.t1 | AT5G18960 | 32.589 | 224 | 138 | 6 | 146 | 367 | 513 | 725 | 1.45e-26 | 115 |
| MS.gene21336.t1 | AT1G10240 | 26.906 | 223 | 150 | 3 | 146 | 367 | 394 | 604 | 1.70e-16 | 83.2 |
| MS.gene21336.t1 | AT1G10240 | 26.906 | 223 | 150 | 3 | 146 | 367 | 394 | 604 | 1.70e-16 | 83.2 |
| MS.gene21336.t1 | AT5G28530 | 27.111 | 225 | 144 | 7 | 147 | 367 | 343 | 551 | 2.78e-14 | 76.3 |
| MS.gene21336.t1 | AT5G28530 | 27.570 | 214 | 139 | 6 | 154 | 367 | 417 | 614 | 4.96e-14 | 75.5 |
| MS.gene21336.t1 | AT5G28530 | 27.570 | 214 | 139 | 6 | 154 | 367 | 417 | 614 | 4.96e-14 | 75.5 |
| MS.gene21336.t1 | AT5G28530 | 26.432 | 227 | 147 | 7 | 147 | 367 | 343 | 555 | 2.53e-13 | 73.2 |
| MS.gene21336.t1 | AT5G28530 | 26.852 | 216 | 142 | 6 | 154 | 367 | 417 | 618 | 4.41e-13 | 72.4 |
Find 92 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCAATGGTAAATGCTTTC+TGG | 0.145575 | 1.4:-71229055 | None:intergenic |
| TACTTGAAATTCTTTAAATT+TGG | 0.164119 | 1.4:-71229075 | None:intergenic |
| AATTAAAGACGTGGTGTTTA+AGG | 0.198475 | 1.4:+71229196 | MS.gene21336:CDS |
| TGTTGCTTATTTGAGTTTAA+AGG | 0.212760 | 1.4:+71229257 | MS.gene21336:CDS |
| TGTATGTGAAAGACACATTT+TGG | 0.241766 | 1.4:+71228829 | MS.gene21336:CDS |
| ATTGCTTGTGTGAGTCATTT+TGG | 0.243877 | 1.4:+71229017 | MS.gene21336:CDS |
| ATGATAATGAATGGTTAAAA+TGG | 0.261144 | 1.4:+71228775 | MS.gene21336:CDS |
| TACGCTAATCGTGTAGGTTT+TGG | 0.267234 | 1.4:+71227757 | MS.gene21336:CDS |
| AGAATTGCAACGTGTTAATA+TGG | 0.267882 | 1.4:+71229412 | MS.gene21336:CDS |
| GTTCAGAACAGGAAATATTC+TGG | 0.287164 | 1.4:-71230036 | None:intergenic |
| AGTAGAAGCAACTTCATAAA+AGG | 0.295990 | 1.4:-71229444 | None:intergenic |
| TAATACTAGCTTTGAAAGAT+TGG | 0.313945 | 1.4:+71229121 | MS.gene21336:CDS |
| TTTATGATTTGAGGACAATA+TGG | 0.324306 | 1.4:-71230013 | None:intergenic |
| TCTGAGCAAAAGTGATTTCA+TGG | 0.327773 | 1.4:+71228716 | MS.gene21336:CDS |
| TTCAATAACAATTCTTGAAA+TGG | 0.335352 | 1.4:-71227956 | None:intergenic |
| TGGTAAATGCTTTCTGGAAA+TGG | 0.337237 | 1.4:-71229049 | None:intergenic |
| AATGCTTGTGTAGCTTTAGA+TGG | 0.358270 | 1.4:+71227925 | MS.gene21336:CDS |
| AATCCTGGAGGAAGGCTCTT+TGG | 0.358296 | 1.4:-71229537 | None:intergenic |
| CTTTGTGTGCTTAAGCTCAT+TGG | 0.361479 | 1.4:+71229299 | MS.gene21336:CDS |
| TTTAGATTGGATGAGAGTTC+GGG | 0.368260 | 1.4:+71228015 | MS.gene21336:CDS |
| TCATCAGTTTCTTGAAGAAT+AGG | 0.369535 | 1.4:-71229873 | None:intergenic |
| ATGGGCATCCTCTTTCAAAA+AGG | 0.374223 | 1.4:+71229627 | MS.gene21336:CDS |
| TAAGGTATCTTTCAATGAAA+AGG | 0.385167 | 1.4:+71229214 | MS.gene21336:CDS |
| ATTTGATGAGCGGCACCGTT+GGG | 0.394490 | 1.4:+71228800 | MS.gene21336:CDS |
| GGGTGTGGGAATCTTACTTC+TGG | 0.395908 | 1.4:+71228126 | MS.gene21336:CDS |
| AGGATGGTTGATCATTCTTA+TGG | 0.398505 | 1.4:-71230161 | None:intergenic |
| CAACAGTAACTCTCAGTAAT+GGG | 0.407618 | 1.4:+71229609 | MS.gene21336:CDS |
| ATTTACAGAAAGTGATGAAC+AGG | 0.427795 | 1.4:+71229486 | MS.gene21336:CDS |
| ATATTCTGGTTTATGATTTG+AGG | 0.444118 | 1.4:-71230022 | None:intergenic |
| GTTCGGGGCCTCCTGTAGAT+AGG | 0.452259 | 1.4:+71228031 | MS.gene21336:CDS |
| GACAACATTGAAGCGGTTTG+TGG | 0.452916 | 1.4:+71228920 | MS.gene21336:CDS |
| TATTTGATGAGCGGCACCGT+TGG | 0.456287 | 1.4:+71228799 | MS.gene21336:CDS |
| AGTTCTAAATTCCTATCTAC+AGG | 0.458130 | 1.4:-71228042 | None:intergenic |
| TACCTGTAAAAGTTCAGAAC+AGG | 0.463097 | 1.4:-71230047 | None:intergenic |
| GGTCTATGTCTTTATGAGGA+TGG | 0.479819 | 1.4:-71230177 | None:intergenic |
| TTAACCATTCATTATCATGT+AGG | 0.496964 | 1.4:-71228770 | None:intergenic |
| CAATCTAAAATACCGTCCTC+TGG | 0.503024 | 1.4:-71228001 | None:intergenic |
| CAACTCAAAACCACGTGACT+AGG | 0.503075 | 1.4:+71229576 | MS.gene21336:CDS |
| CCAACAGTAACTCTCAGTAA+TGG | 0.503577 | 1.4:+71229608 | MS.gene21336:CDS |
| AGTATGTTCTTGTGTAATCC+TGG | 0.507755 | 1.4:-71229552 | None:intergenic |
| GGTGTTGAGATGAATGGGTG+TGG | 0.508197 | 1.4:+71228111 | MS.gene21336:CDS |
| TACTAGCTTTGAAAGATTGG+AGG | 0.508243 | 1.4:+71229124 | MS.gene21336:CDS |
| AATTTAGAACTTAATGATCA+AGG | 0.509710 | 1.4:+71228054 | MS.gene21336:CDS |
| GGTTGGTCTATGTCTTTATG+AGG | 0.512909 | 1.4:-71230181 | None:intergenic |
| GAGGTAAGATATTGCTTCGA+AGG | 0.514633 | 1.4:-71227877 | None:intergenic |
| CTGTGGGTGTTGAGATGAAT+GGG | 0.521887 | 1.4:+71228106 | MS.gene21336:CDS |
| AAGTGATTTCATGGAGAGGT+GGG | 0.523064 | 1.4:+71228725 | MS.gene21336:CDS |
| ATTGAATGATAAAATCGAAA+AGG | 0.526317 | 1.4:+71228959 | MS.gene21336:CDS |
| GATCAAGGTGGGATTAATGT+TGG | 0.526517 | 1.4:+71228069 | MS.gene21336:CDS |
| AAATTCTTTAAATTTGGCAA+TGG | 0.528148 | 1.4:-71229069 | None:intergenic |
| ATTGAACATAATCATGAACT+TGG | 0.529122 | 1.4:+71227973 | MS.gene21336:CDS |
| ATAACCTACATGATAATGAA+TGG | 0.540605 | 1.4:+71228766 | MS.gene21336:CDS |
| ATTTAAAGAATTTCAAGTAG+AGG | 0.542601 | 1.4:+71229079 | MS.gene21336:CDS |
| CTTCCAAAGAGCCTTCCTCC+AGG | 0.543257 | 1.4:+71229534 | MS.gene21336:CDS |
| AAAGTGATTTCATGGAGAGG+TGG | 0.559223 | 1.4:+71228724 | MS.gene21336:CDS |
| GAAAGTGATGAACAGGATCA+AGG | 0.562243 | 1.4:+71229493 | MS.gene21336:CDS |
| TAGAACTTAATGATCAAGGT+GGG | 0.565203 | 1.4:+71228058 | MS.gene21336:CDS |
| TCTGTGGGTGTTGAGATGAA+TGG | 0.568290 | 1.4:+71228105 | MS.gene21336:CDS |
| TACCTCGAAAACACAGTGTA+GGG | 0.568827 | 1.4:+71227894 | MS.gene21336:CDS |
| TTACCTCGAAAACACAGTGT+AGG | 0.570982 | 1.4:+71227893 | MS.gene21336:CDS |
| ATGAATTACGCTAATCGTGT+AGG | 0.573095 | 1.4:+71227751 | MS.gene21336:CDS |
| GTGTTGAGATGAATGGGTGT+GGG | 0.575538 | 1.4:+71228112 | MS.gene21336:CDS |
| TAAAATGGTTATTTGATGAG+CGG | 0.580254 | 1.4:+71228790 | MS.gene21336:CDS |
| ACTCAAAGACAACATTGAAG+CGG | 0.582318 | 1.4:+71228913 | MS.gene21336:CDS |
| AAACGATCAAAGTCAAGAAG+AGG | 0.583429 | 1.4:+71229727 | MS.gene21336:CDS |
| CCATTACTGAGAGTTACTGT+TGG | 0.587222 | 1.4:-71229608 | None:intergenic |
| AGATATACATTGATGAAACA+TGG | 0.592243 | 1.4:+71229383 | MS.gene21336:CDS |
| ACATCTTAGTGATGTAAACC+AGG | 0.599828 | 1.4:+71229902 | MS.gene21336:CDS |
| TAGCATGTAATTGTGCAAGA+AGG | 0.600918 | 1.4:+71227833 | MS.gene21336:CDS |
| GGTAGAAATCTTCAATCTGT+GGG | 0.601916 | 1.4:+71228090 | MS.gene21336:CDS |
| TAAAATCGAAAAGGAAAGCA+TGG | 0.602750 | 1.4:+71228968 | MS.gene21336:CDS |
| AATGTGTCTTTCACATACAC+AGG | 0.609838 | 1.4:-71228825 | None:intergenic |
| CGAAAACACAGTGTAGGGCT+AGG | 0.611004 | 1.4:+71227899 | MS.gene21336:CDS |
| AGGCTCTTTGGAAGATAACA+CGG | 0.622621 | 1.4:-71229525 | None:intergenic |
| TCTAAATTCCTATCTACAGG+AGG | 0.640190 | 1.4:-71228039 | None:intergenic |
| TGGTAGAAATCTTCAATCTG+TGG | 0.643326 | 1.4:+71228089 | MS.gene21336:CDS |
| TCTTGTGTAATCCTGGAGGA+AGG | 0.646992 | 1.4:-71229545 | None:intergenic |
| AACTTGGTCAAACCAGAGGA+CGG | 0.650612 | 1.4:+71227989 | MS.gene21336:CDS |
| AGTGATTTCATGGAGAGGTG+GGG | 0.655787 | 1.4:+71228726 | MS.gene21336:CDS |
| CAAAACTCCAAAGAACAGCA+AGG | 0.655801 | 1.4:+71229697 | MS.gene21336:CDS |
| TTAGATTGGATGAGAGTTCG+GGG | 0.677484 | 1.4:+71228016 | MS.gene21336:CDS |
| TCACATACACAGGAACCCAA+CGG | 0.679348 | 1.4:-71228815 | None:intergenic |
| TTAGAACTTAATGATCAAGG+TGG | 0.679824 | 1.4:+71228057 | MS.gene21336:CDS |
| AAAAGAGAAAATTAAAGACG+TGG | 0.683650 | 1.4:+71229187 | MS.gene21336:CDS |
| GCAAAAGTGATTTCATGGAG+AGG | 0.684724 | 1.4:+71228721 | MS.gene21336:CDS |
| CTGGAATGTCGACTGCACAA+CGG | 0.692769 | 1.4:+71228853 | MS.gene21336:CDS |
| CATGAACTTGGTCAAACCAG+AGG | 0.694396 | 1.4:+71227985 | MS.gene21336:CDS |
| ATGTTCTTGTGTAATCCTGG+AGG | 0.702736 | 1.4:-71229549 | None:intergenic |
| GGTGGAGGAAGTATGTAAAG+CGG | 0.705310 | 1.4:+71229360 | MS.gene21336:CDS |
| GATCAACAATCCTAGTCACG+TGG | 0.707154 | 1.4:-71229586 | None:intergenic |
| TTTACATACTTCCTCCACCG+TGG | 0.708646 | 1.4:-71229356 | None:intergenic |
| AATCGAAAAGGAAAGCATGG+CGG | 0.726163 | 1.4:+71228971 | MS.gene21336:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATATACAAAATTTATTTT+GGG | + | chr1.4:71228293-71228312 | MS.gene21336:intron | 10.0% |
| !! | TACTTGAAATTCTTTAAATT+TGG | - | chr1.4:71229078-71229097 | None:intergenic | 15.0% |
| !!! | ATAAATAAATGTCTGATTTT+GGG | + | chr1.4:71229822-71229841 | MS.gene21336:intron | 15.0% |
| !!! | ATACTTATTTGTTAAATAAG+TGG | - | chr1.4:71228376-71228395 | None:intergenic | 15.0% |
| !!! | GGAATATACAAAATTTATTT+TGG | + | chr1.4:71228292-71228311 | MS.gene21336:intron | 15.0% |
| !! | AAATCGAGAAAATAAATTTG+TGG | - | chr1.4:71229765-71229784 | None:intergenic | 20.0% |
| !! | AAATTCTTTAAATTTGGCAA+TGG | - | chr1.4:71229072-71229091 | None:intergenic | 20.0% |
| !! | ATTGAATGATAAAATCGAAA+AGG | + | chr1.4:71228959-71228978 | MS.gene21336:CDS | 20.0% |
| !! | TTATTTGAACATTTACATTG+TGG | + | chr1.4:71229958-71229977 | MS.gene21336:intron | 20.0% |
| !! | TTCAATAACAATTCTTGAAA+TGG | - | chr1.4:71227959-71227978 | None:intergenic | 20.0% |
| !!! | AACTTTTACAGGTATTTATT+TGG | + | chr1.4:71230056-71230075 | MS.gene21336:intron | 20.0% |
| !!! | AATTTAGAACTTAATGATCA+AGG | + | chr1.4:71228054-71228073 | MS.gene21336:CDS | 20.0% |
| !!! | ATGATAATGAATGGTTAAAA+TGG | + | chr1.4:71228775-71228794 | MS.gene21336:CDS | 20.0% |
| !!! | ATTTAAAGAATTTCAAGTAG+AGG | + | chr1.4:71229079-71229098 | MS.gene21336:CDS | 20.0% |
| !!! | ATTTATTTGGTTATTTCTTG+TGG | + | chr1.4:71230069-71230088 | MS.gene21336:intron | 20.0% |
| !!! | CATAAATAAATGTCTGATTT+TGG | + | chr1.4:71229821-71229840 | MS.gene21336:intron | 20.0% |
| ! | AAAAGAGAAAATTAAAGACG+TGG | + | chr1.4:71229187-71229206 | MS.gene21336:CDS | 25.0% |
| ! | AGATATACATTGATGAAACA+TGG | + | chr1.4:71229383-71229402 | MS.gene21336:CDS | 25.0% |
| ! | ATTGAACATAATCATGAACT+TGG | + | chr1.4:71227973-71227992 | MS.gene21336:CDS | 25.0% |
| ! | TAAAATGGTTATTTGATGAG+CGG | + | chr1.4:71228790-71228809 | MS.gene21336:CDS | 25.0% |
| ! | TGATAAAATATCTGTTTCGT+AGG | + | chr1.4:71229988-71230007 | MS.gene21336:intron | 25.0% |
| ! | TTAACCATTCATTATCATGT+AGG | - | chr1.4:71228773-71228792 | None:intergenic | 25.0% |
| ! | TTTATGATTTGAGGACAATA+TGG | - | chr1.4:71230016-71230035 | None:intergenic | 25.0% |
| ! | TTTCATTGCTTTATCATCTT+CGG | - | chr1.4:71228556-71228575 | None:intergenic | 25.0% |
| !! | ATAACCTACATGATAATGAA+TGG | + | chr1.4:71228766-71228785 | MS.gene21336:CDS | 25.0% |
| !! | TAAGGTATCTTTCAATGAAA+AGG | + | chr1.4:71229214-71229233 | MS.gene21336:CDS | 25.0% |
| !! | TGTTGCTTATTTGAGTTTAA+AGG | + | chr1.4:71229257-71229276 | MS.gene21336:CDS | 25.0% |
| !!! | AAATAAAAATAAAGAGCACC+AGG | - | chr1.4:71229944-71229963 | None:intergenic | 25.0% |
| !!! | AGTATAGACTCATTTTTTGA+TGG | + | chr1.4:71228882-71228901 | MS.gene21336:CDS | 25.0% |
| !!! | ATATTCTGGTTTATGATTTG+AGG | - | chr1.4:71230025-71230044 | None:intergenic | 25.0% |
| !!! | GTATAGACTCATTTTTTGAT+GGG | + | chr1.4:71228883-71228902 | MS.gene21336:CDS | 25.0% |
| !!! | TAATACTAGCTTTGAAAGAT+TGG | + | chr1.4:71229121-71229140 | MS.gene21336:CDS | 25.0% |
| AATTAAAGACGTGGTGTTTA+AGG | + | chr1.4:71229196-71229215 | MS.gene21336:CDS | 30.0% | |
| AGAATTGCAACGTGTTAATA+TGG | + | chr1.4:71229412-71229431 | MS.gene21336:CDS | 30.0% | |
| AGCAATGAAAAATGCAATTG+AGG | + | chr1.4:71228566-71228585 | MS.gene21336:intron | 30.0% | |
| AGTAGAAGCAACTTCATAAA+AGG | - | chr1.4:71229447-71229466 | None:intergenic | 30.0% | |
| AGTTCAAAAAATGCAGATGA+TGG | + | chr1.4:71227793-71227812 | MS.gene21336:CDS | 30.0% | |
| ATAAAATAGTCTGACCATGA+TGG | - | chr1.4:71228431-71228450 | None:intergenic | 30.0% | |
| ATTTACAGAAAGTGATGAAC+AGG | + | chr1.4:71229486-71229505 | MS.gene21336:CDS | 30.0% | |
| CAATGGATATGGATGATAAA+AGG | + | chr1.4:71228271-71228290 | MS.gene21336:intron | 30.0% | |
| CGTGGCAAAATATAAAAAGA+CGG | - | chr1.4:71229341-71229360 | None:intergenic | 30.0% | |
| TAAAATCGAAAAGGAAAGCA+TGG | + | chr1.4:71228968-71228987 | MS.gene21336:CDS | 30.0% | |
| TAGAACTTAATGATCAAGGT+GGG | + | chr1.4:71228058-71228077 | MS.gene21336:CDS | 30.0% | |
| TCATCAGTTTCTTGAAGAAT+AGG | - | chr1.4:71229876-71229895 | None:intergenic | 30.0% | |
| TTAGAACTTAATGATCAAGG+TGG | + | chr1.4:71228057-71228076 | MS.gene21336:CDS | 30.0% | |
| ! | AAATAAGTATGACTTGCCAT+TGG | + | chr1.4:71228386-71228405 | MS.gene21336:intron | 30.0% |
| ! | ATGGTCAGACTATTTTATTG+GGG | + | chr1.4:71228433-71228452 | MS.gene21336:intron | 30.0% |
| ! | ATTTTACTGTGCAATGGATA+TGG | + | chr1.4:71228260-71228279 | MS.gene21336:intron | 30.0% |
| ! | CATGGTCAGACTATTTTATT+GGG | + | chr1.4:71228432-71228451 | MS.gene21336:intron | 30.0% |
| ! | CGTCTTTTTATATTTTGCCA+CGG | + | chr1.4:71229339-71229358 | MS.gene21336:CDS | 30.0% |
| ! | GTATGTGAAAGACACATTTT+GGG | + | chr1.4:71228830-71228849 | MS.gene21336:CDS | 30.0% |
| ! | TAGTCAATTTTACTGTGCAA+TGG | + | chr1.4:71228254-71228273 | MS.gene21336:intron | 30.0% |
| ! | TCATGGTCAGACTATTTTAT+TGG | + | chr1.4:71228431-71228450 | MS.gene21336:intron | 30.0% |
| ! | TGTATGTGAAAGACACATTT+TGG | + | chr1.4:71228829-71228848 | MS.gene21336:CDS | 30.0% |
| ! | TTTTAGATTGGATGAGAGTT+CGG | + | chr1.4:71228014-71228033 | MS.gene21336:CDS | 30.0% |
| ! | TTTTGGTGAAGTCATAACTT+TGG | + | chr1.4:71228347-71228366 | MS.gene21336:intron | 30.0% |
| !! | AGTTCTAAATTCCTATCTAC+AGG | - | chr1.4:71228045-71228064 | None:intergenic | 30.0% |
| !!! | ATTTTGGGTTTTTTATGGCA+GGG | + | chr1.4:71229837-71229856 | MS.gene21336:intron | 30.0% |
| !!! | GTCTGATTTTGGGTTTTTTA+TGG | + | chr1.4:71229832-71229851 | MS.gene21336:intron | 30.0% |
| !!! | TTATTTTCCTTGCTGTTCTT+TGG | - | chr1.4:71229707-71229726 | None:intergenic | 30.0% |
| AAACGATCAAAGTCAAGAAG+AGG | + | chr1.4:71229727-71229746 | MS.gene21336:CDS | 35.0% | |
| AAGAAGGTTCCAGAAATGTT+GGG | + | chr1.4:71228636-71228655 | MS.gene21336:intron | 35.0% | |
| AATGTGTCTTTCACATACAC+AGG | - | chr1.4:71228828-71228847 | None:intergenic | 35.0% | |
| ACATCTTAGTGATGTAAACC+AGG | + | chr1.4:71229902-71229921 | MS.gene21336:CDS | 35.0% | |
| ACTCAAAGACAACATTGAAG+CGG | + | chr1.4:71228913-71228932 | MS.gene21336:CDS | 35.0% | |
| AGATGGTTAGAATGTATGCA+TGG | + | chr1.4:71228507-71228526 | MS.gene21336:intron | 35.0% | |
| AGGATGGTTGATCATTCTTA+TGG | - | chr1.4:71230164-71230183 | None:intergenic | 35.0% | |
| AGTATGTTCTTGTGTAATCC+TGG | - | chr1.4:71229555-71229574 | None:intergenic | 35.0% | |
| ATGAATTACGCTAATCGTGT+AGG | + | chr1.4:71227751-71227770 | MS.gene21336:CDS | 35.0% | |
| ATTCTGTGCAGAAAGTAAGA+CGG | + | chr1.4:71228166-71228185 | MS.gene21336:intron | 35.0% | |
| CAACAGTAACTCTCAGTAAT+GGG | + | chr1.4:71229609-71229628 | MS.gene21336:CDS | 35.0% | |
| CTTGTGGCATATAATGAAGA+AGG | + | chr1.4:71228620-71228639 | MS.gene21336:intron | 35.0% | |
| GAGTATTTACCCAACATTTC+TGG | - | chr1.4:71228648-71228667 | None:intergenic | 35.0% | |
| GGTAGAAATCTTCAATCTGT+GGG | + | chr1.4:71228090-71228109 | MS.gene21336:CDS | 35.0% | |
| GGTGATGAAAATATAGAACC+TGG | + | chr1.4:71229923-71229942 | MS.gene21336:intron | 35.0% | |
| GTTCAGAACAGGAAATATTC+TGG | - | chr1.4:71230039-71230058 | None:intergenic | 35.0% | |
| TACCTGTAAAAGTTCAGAAC+AGG | - | chr1.4:71230050-71230069 | None:intergenic | 35.0% | |
| TAGCATGTAATTGTGCAAGA+AGG | + | chr1.4:71227833-71227852 | MS.gene21336:CDS | 35.0% | |
| TCTAAATTCCTATCTACAGG+AGG | - | chr1.4:71228042-71228061 | None:intergenic | 35.0% | |
| TCTGAGCAAAAGTGATTTCA+TGG | + | chr1.4:71228716-71228735 | MS.gene21336:CDS | 35.0% | |
| TCTTCGGTAATTATGCCATT+TGG | - | chr1.4:71228540-71228559 | None:intergenic | 35.0% | |
| TGGATGCTAAAACTCTTACT+TGG | + | chr1.4:71228475-71228494 | MS.gene21336:intron | 35.0% | |
| TGGTAGAAATCTTCAATCTG+TGG | + | chr1.4:71228089-71228108 | MS.gene21336:CDS | 35.0% | |
| TTACTTGGTTGTTCACAAGA+TGG | + | chr1.4:71228490-71228509 | MS.gene21336:intron | 35.0% | |
| TTTAGATTGGATGAGAGTTC+GGG | + | chr1.4:71228015-71228034 | MS.gene21336:CDS | 35.0% | |
| ! | AGGGCTGCATATGAATATTT+TGG | + | chr1.4:71228330-71228349 | MS.gene21336:intron | 35.0% |
| ! | ATTGCTTGTGTGAGTCATTT+TGG | + | chr1.4:71229017-71229036 | MS.gene21336:CDS | 35.0% |
| ! | CTTTTTATATTTTGCCACGG+TGG | + | chr1.4:71229342-71229361 | MS.gene21336:CDS | 35.0% |
| ! | GGTTCTATATTTTCATCACC+TGG | - | chr1.4:71229923-71229942 | None:intergenic | 35.0% |
| ! | GTCTATCAAAACACTTTTGC+AGG | + | chr1.4:71228677-71228696 | MS.gene21336:intron | 35.0% |
| ! | TGGTAAATGCTTTCTGGAAA+TGG | - | chr1.4:71229052-71229071 | None:intergenic | 35.0% |
| !! | AATGCTTGTGTAGCTTTAGA+TGG | + | chr1.4:71227925-71227944 | MS.gene21336:CDS | 35.0% |
| !! | GATGTCTTCCTTTTTGAAAG+AGG | - | chr1.4:71229638-71229657 | None:intergenic | 35.0% |
| !! | GGTTATTTCTTGTGGTAACA+TGG | + | chr1.4:71230077-71230096 | MS.gene21336:intron | 35.0% |
| !! | TACTAGCTTTGAAAGATTGG+AGG | + | chr1.4:71229124-71229143 | MS.gene21336:CDS | 35.0% |
| !! | TTCCTGTTCTGAACTTTTAC+AGG | + | chr1.4:71230045-71230064 | MS.gene21336:CDS | 35.0% |
| !!! | GATTTTGGGTTTTTTATGGC+AGG | + | chr1.4:71229836-71229855 | MS.gene21336:intron | 35.0% |
| AAAGTAAGACGGCTAAGACT+TGG | + | chr1.4:71228177-71228196 | MS.gene21336:intron | 40.0% | |
| AAAGTGATTTCATGGAGAGG+TGG | + | chr1.4:71228724-71228743 | MS.gene21336:CDS | 40.0% | |
| AAGTAAGACGGCTAAGACTT+GGG | + | chr1.4:71228178-71228197 | MS.gene21336:intron | 40.0% | |
| AAGTGATTTCATGGAGAGGT+GGG | + | chr1.4:71228725-71228744 | MS.gene21336:CDS | 40.0% | |
| ATGATGGTTCACTCCAACAA+AGG | - | chr1.4:71228415-71228434 | None:intergenic | 40.0% | |
| ATGGGCATCCTCTTTCAAAA+AGG | + | chr1.4:71229627-71229646 | MS.gene21336:CDS | 40.0% | |
| ATGTTCTTGTGTAATCCTGG+AGG | - | chr1.4:71229552-71229571 | None:intergenic | 40.0% | |
| CAAAACTCCAAAGAACAGCA+AGG | + | chr1.4:71229697-71229716 | MS.gene21336:CDS | 40.0% | |
| CCAACAGTAACTCTCAGTAA+TGG | + | chr1.4:71229608-71229627 | MS.gene21336:CDS | 40.0% | |
| CCATTACTGAGAGTTACTGT+TGG | - | chr1.4:71229611-71229630 | None:intergenic | 40.0% | |
| CTTTGTGTGCTTAAGCTCAT+TGG | + | chr1.4:71229299-71229318 | MS.gene21336:CDS | 40.0% | |
| GAAAGTGATGAACAGGATCA+AGG | + | chr1.4:71229493-71229512 | MS.gene21336:CDS | 40.0% | |
| GAAGAAGGTTCCAGAAATGT+TGG | + | chr1.4:71228635-71228654 | MS.gene21336:intron | 40.0% | |
| GAGGTAAGATATTGCTTCGA+AGG | - | chr1.4:71227880-71227899 | None:intergenic | 40.0% | |
| GATCAAGGTGGGATTAATGT+TGG | + | chr1.4:71228069-71228088 | MS.gene21336:CDS | 40.0% | |
| GCAAAAGTGATTTCATGGAG+AGG | + | chr1.4:71228721-71228740 | MS.gene21336:CDS | 40.0% | |
| TACCTCGAAAACACAGTGTA+GGG | + | chr1.4:71227894-71227913 | MS.gene21336:CDS | 40.0% | |
| TGATGGTTCACTCCAACAAA+GGG | - | chr1.4:71228414-71228433 | None:intergenic | 40.0% | |
| TGCCTGCAAAAAGAACACAT+GGG | - | chr1.4:71230136-71230155 | None:intergenic | 40.0% | |
| TGGCAATGGTAAATGCTTTC+TGG | - | chr1.4:71229058-71229077 | None:intergenic | 40.0% | |
| TTACCTCGAAAACACAGTGT+AGG | + | chr1.4:71227893-71227912 | MS.gene21336:CDS | 40.0% | |
| TTAGATTGGATGAGAGTTCG+GGG | + | chr1.4:71228016-71228035 | MS.gene21336:CDS | 40.0% | |
| TTTGTTGGAGTGAACCATCA+TGG | + | chr1.4:71228414-71228433 | MS.gene21336:intron | 40.0% | |
| ! | AATCGAAAAGGAAAGCATGG+CGG | + | chr1.4:71228971-71228990 | MS.gene21336:CDS | 40.0% |
| ! | AGGCTCTTTGGAAGATAACA+CGG | - | chr1.4:71229528-71229547 | None:intergenic | 40.0% |
| ! | CAAAACACTTTTGCAGGATG+TGG | + | chr1.4:71228683-71228702 | MS.gene21336:intron | 40.0% |
| ! | CAATCTAAAATACCGTCCTC+TGG | - | chr1.4:71228004-71228023 | None:intergenic | 40.0% |
| ! | TACGCTAATCGTGTAGGTTT+TGG | + | chr1.4:71227757-71227776 | MS.gene21336:CDS | 40.0% |
| ! | TTTATATTTTGCCACGGTGG+AGG | + | chr1.4:71229345-71229364 | MS.gene21336:CDS | 40.0% |
| !! | CAGAGGACGGTATTTTAGAT+TGG | + | chr1.4:71228002-71228021 | MS.gene21336:CDS | 40.0% |
| AACTTGGTCAAACCAGAGGA+CGG | + | chr1.4:71227989-71228008 | MS.gene21336:CDS | 45.0% | |
| AGTGATTTCATGGAGAGGTG+GGG | + | chr1.4:71228726-71228745 | MS.gene21336:CDS | 45.0% | |
| ATGCATGGACATGCTCCAAA+TGG | + | chr1.4:71228522-71228541 | MS.gene21336:intron | 45.0% | |
| CAACTCAAAACCACGTGACT+AGG | + | chr1.4:71229576-71229595 | MS.gene21336:CDS | 45.0% | |
| CATGAACTTGGTCAAACCAG+AGG | + | chr1.4:71227985-71228004 | MS.gene21336:CDS | 45.0% | |
| GACAACATTGAAGCGGTTTG+TGG | + | chr1.4:71228920-71228939 | MS.gene21336:CDS | 45.0% | |
| GATCAACAATCCTAGTCACG+TGG | - | chr1.4:71229589-71229608 | None:intergenic | 45.0% | |
| GATGGTTCACTCCAACAAAG+GGG | - | chr1.4:71228413-71228432 | None:intergenic | 45.0% | |
| GTGCCTGCAAAAAGAACACA+TGG | - | chr1.4:71230137-71230156 | None:intergenic | 45.0% | |
| GTGTGCAATATTGTCGAACG+TGG | + | chr1.4:71228455-71228474 | MS.gene21336:intron | 45.0% | |
| GTGTTGAGATGAATGGGTGT+GGG | + | chr1.4:71228112-71228131 | MS.gene21336:CDS | 45.0% | |
| TCACATACACAGGAACCCAA+CGG | - | chr1.4:71228818-71228837 | None:intergenic | 45.0% | |
| TCTTGTGTAATCCTGGAGGA+AGG | - | chr1.4:71229548-71229567 | None:intergenic | 45.0% | |
| TTCCTAAAGCTCGTCATCGA+TGG | + | chr1.4:71228595-71228614 | MS.gene21336:intron | 45.0% | |
| TTTACATACTTCCTCCACCG+TGG | - | chr1.4:71229359-71229378 | None:intergenic | 45.0% | |
| ! | GGTGGAGGAAGTATGTAAAG+CGG | + | chr1.4:71229360-71229379 | MS.gene21336:CDS | 45.0% |
| ! | GTGAAAGACACATTTTGGGC+TGG | + | chr1.4:71228834-71228853 | MS.gene21336:CDS | 45.0% |
| ! | TGCCCATGTGTTCTTTTTGC+AGG | + | chr1.4:71230131-71230150 | MS.gene21336:intron | 45.0% |
| !! | CTGTGGGTGTTGAGATGAAT+GGG | + | chr1.4:71228106-71228125 | MS.gene21336:CDS | 45.0% |
| !! | TCGATGACGAGCTTTAGGAA+AGG | - | chr1.4:71228595-71228614 | None:intergenic | 45.0% |
| !! | TCTGTGGGTGTTGAGATGAA+TGG | + | chr1.4:71228105-71228124 | MS.gene21336:CDS | 45.0% |
| AATCCTGGAGGAAGGCTCTT+TGG | - | chr1.4:71229540-71229559 | None:intergenic | 50.0% | |
| ACTCCAACAAAGGGGACCAA+TGG | - | chr1.4:71228405-71228424 | None:intergenic | 50.0% | |
| ATTTGATGAGCGGCACCGTT+GGG | + | chr1.4:71228800-71228819 | MS.gene21336:CDS | 50.0% | |
| CACCATCGATGACGAGCTTT+AGG | - | chr1.4:71228600-71228619 | None:intergenic | 50.0% | |
| CGAAAACACAGTGTAGGGCT+AGG | + | chr1.4:71227899-71227918 | MS.gene21336:CDS | 50.0% | |
| GGGTGTGGGAATCTTACTTC+TGG | + | chr1.4:71228126-71228145 | MS.gene21336:CDS | 50.0% | |
| TATTTGATGAGCGGCACCGT+TGG | + | chr1.4:71228799-71228818 | MS.gene21336:CDS | 50.0% | |
| TTGCCATTGGTCCCCTTTGT+TGG | + | chr1.4:71228399-71228418 | MS.gene21336:intron | 50.0% | |
| TTGGGCAGATGCGAGATGTA+GGG | + | chr1.4:71228311-71228330 | MS.gene21336:intron | 50.0% | |
| TTTGGGCAGATGCGAGATGT+AGG | + | chr1.4:71228310-71228329 | MS.gene21336:intron | 50.0% | |
| ! | AGCCCTACACTGTGTTTTCG+AGG | - | chr1.4:71227899-71227918 | None:intergenic | 50.0% |
| ! | CTGGAATGTCGACTGCACAA+CGG | + | chr1.4:71228853-71228872 | MS.gene21336:CDS | 50.0% |
| ! | GGTGTTGAGATGAATGGGTG+TGG | + | chr1.4:71228111-71228130 | MS.gene21336:CDS | 50.0% |
| AGACGGCTAAGACTTGGGAG+AGG | + | chr1.4:71228183-71228202 | MS.gene21336:intron | 55.0% | |
| CTCGTCATCGATGGTGCTTG+TGG | + | chr1.4:71228604-71228623 | MS.gene21336:intron | 55.0% | |
| CTTCCAAAGAGCCTTCCTCC+AGG | + | chr1.4:71229534-71229553 | MS.gene21336:CDS | 55.0% | |
| GTTCGGGGCCTCCTGTAGAT+AGG | + | chr1.4:71228031-71228050 | MS.gene21336:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 71227751 | 71230188 | 71227751 | ID=MS.gene21336 |
| chr1.4 | mRNA | 71227751 | 71230188 | 71227751 | ID=MS.gene21336.t1;Parent=MS.gene21336 |
| chr1.4 | exon | 71227751 | 71228179 | 71227751 | ID=MS.gene21336.t1.exon1;Parent=MS.gene21336.t1 |
| chr1.4 | CDS | 71227751 | 71228179 | 71227751 | ID=cds.MS.gene21336.t1;Parent=MS.gene21336.t1 |
| chr1.4 | exon | 71228699 | 71229748 | 71228699 | ID=MS.gene21336.t1.exon2;Parent=MS.gene21336.t1 |
| chr1.4 | CDS | 71228699 | 71229748 | 71228699 | ID=cds.MS.gene21336.t1;Parent=MS.gene21336.t1 |
| chr1.4 | exon | 71229858 | 71229923 | 71229858 | ID=MS.gene21336.t1.exon3;Parent=MS.gene21336.t1 |
| chr1.4 | CDS | 71229858 | 71229923 | 71229858 | ID=cds.MS.gene21336.t1;Parent=MS.gene21336.t1 |
| chr1.4 | exon | 71230010 | 71230066 | 71230010 | ID=MS.gene21336.t1.exon4;Parent=MS.gene21336.t1 |
| chr1.4 | CDS | 71230010 | 71230066 | 71230010 | ID=cds.MS.gene21336.t1;Parent=MS.gene21336.t1 |
| chr1.4 | exon | 71230153 | 71230188 | 71230153 | ID=MS.gene21336.t1.exon5;Parent=MS.gene21336.t1 |
| chr1.4 | CDS | 71230153 | 71230188 | 71230153 | ID=cds.MS.gene21336.t1;Parent=MS.gene21336.t1 |
| Gene Sequence |
| Protein sequence |
