Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21847.t1 | PNX93638.1 | 82 | 306 | 54 | 1 | 1 | 306 | 1 | 305 | 2.90E-140 | 508.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21847.t1 | A6LS61 | 33.9 | 271 | 137 | 8 | 9 | 276 | 3 | 234 | 3.3e-31 | 137.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21847.t1 | A0A2K3MS27 | 82.0 | 306 | 54 | 1 | 1 | 306 | 1 | 305 | 2.1e-140 | 508.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049611 | MS.gene21847 | 0.810783 | 9.71E-51 | -1.69E-46 |
| MS.gene050170 | MS.gene21847 | -0.808887 | 2.48E-50 | -1.69E-46 |
| MS.gene050381 | MS.gene21847 | 0.839967 | 1.15E-57 | -1.69E-46 |
| MS.gene050504 | MS.gene21847 | -0.801109 | 1.05E-48 | -1.69E-46 |
| MS.gene050868 | MS.gene21847 | -0.812462 | 4.19E-51 | -1.69E-46 |
| MS.gene050871 | MS.gene21847 | -0.813299 | 2.75E-51 | -1.69E-46 |
| MS.gene050883 | MS.gene21847 | 0.812486 | 4.14E-51 | -1.69E-46 |
| MS.gene051044 | MS.gene21847 | 0.802074 | 6.67E-49 | -1.69E-46 |
| MS.gene05104 | MS.gene21847 | 0.812834 | 3.47E-51 | -1.69E-46 |
| MS.gene051364 | MS.gene21847 | 0.80175 | 7.77E-49 | -1.69E-46 |
| MS.gene051946 | MS.gene21847 | 0.800245 | 1.58E-48 | -1.69E-46 |
| MS.gene05240 | MS.gene21847 | 0.80554 | 1.27E-49 | -1.69E-46 |
| MS.gene052606 | MS.gene21847 | 0.806938 | 6.45E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene21847 | -0.81553 | 8.82E-52 | -1.69E-46 |
| MS.gene053420 | MS.gene21847 | 0.817528 | 3.15E-52 | -1.69E-46 |
| MS.gene054146 | MS.gene21847 | 0.801377 | 9.27E-49 | -1.69E-46 |
| MS.gene054706 | MS.gene21847 | 0.811137 | 8.14E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene21847 | -0.813109 | 3.02E-51 | -1.69E-46 |
| MS.gene055124 | MS.gene21847 | 0.830234 | 3.29E-55 | -1.69E-46 |
| MS.gene055139 | MS.gene21847 | 0.805375 | 1.38E-49 | -1.69E-46 |
| MS.gene055154 | MS.gene21847 | 0.803003 | 4.29E-49 | -1.69E-46 |
| MS.gene055577 | MS.gene21847 | -0.808705 | 2.72E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene21847 | -0.80228 | 6.05E-49 | -1.69E-46 |
| MS.gene056310 | MS.gene21847 | 0.815911 | 7.25E-52 | -1.69E-46 |
| MS.gene056311 | MS.gene21847 | 0.80046 | 1.43E-48 | -1.69E-46 |
| MS.gene056313 | MS.gene21847 | 0.809869 | 1.53E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene21847 | -0.805526 | 1.28E-49 | -1.69E-46 |
| MS.gene056748 | MS.gene21847 | 0.817193 | 3.74E-52 | -1.69E-46 |
| MS.gene057544 | MS.gene21847 | 0.810805 | 9.60E-51 | -1.69E-46 |
| MS.gene058099 | MS.gene21847 | 0.82466 | 7.16E-54 | -1.69E-46 |
| MS.gene058109 | MS.gene21847 | 0.804549 | 2.05E-49 | -1.69E-46 |
| MS.gene058157 | MS.gene21847 | -0.817251 | 3.63E-52 | -1.69E-46 |
| MS.gene058171 | MS.gene21847 | 0.82637 | 2.82E-54 | -1.69E-46 |
| MS.gene058173 | MS.gene21847 | 0.812378 | 4.37E-51 | -1.69E-46 |
| MS.gene058175 | MS.gene21847 | 0.820736 | 5.86E-53 | -1.69E-46 |
| MS.gene05837 | MS.gene21847 | -0.809074 | 2.26E-50 | -1.69E-46 |
| MS.gene059037 | MS.gene21847 | 0.819261 | 1.27E-52 | -1.69E-46 |
| MS.gene059045 | MS.gene21847 | 0.852482 | 4.49E-61 | -1.69E-46 |
| MS.gene060593 | MS.gene21847 | 0.824678 | 7.09E-54 | -1.69E-46 |
| MS.gene060595 | MS.gene21847 | 0.811659 | 6.27E-51 | -1.69E-46 |
| MS.gene060778 | MS.gene21847 | -0.807482 | 4.95E-50 | -1.69E-46 |
| MS.gene06077 | MS.gene21847 | -0.821563 | 3.78E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76157 | MS.gene21847 | PPI |
| MS.gene21847 | MS.gene85230 | PPI |
| MS.gene21847 | MS.gene057003 | PPI |
| MS.gene051956 | MS.gene21847 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21847.t1 | MTR_5g006290 | 79.545 | 308 | 60 | 2 | 1 | 306 | 1 | 307 | 0.0 | 508 |
| MS.gene21847.t1 | MTR_5g006300 | 91.339 | 254 | 10 | 2 | 2 | 249 | 3 | 250 | 1.72e-169 | 471 |
| MS.gene21847.t1 | MTR_1g104500 | 71.197 | 309 | 83 | 4 | 1 | 306 | 1 | 306 | 1.09e-161 | 452 |
| MS.gene21847.t1 | MTR_5g006290 | 81.275 | 251 | 45 | 1 | 1 | 249 | 1 | 251 | 5.79e-154 | 432 |
| MS.gene21847.t1 | MTR_2g099720 | 35.758 | 330 | 176 | 7 | 1 | 297 | 46 | 372 | 3.79e-61 | 199 |
| MS.gene21847.t1 | MTR_1g104513 | 48.750 | 80 | 39 | 1 | 204 | 283 | 1 | 78 | 4.19e-18 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21847.t1 | AT4G14930 | 58.667 | 300 | 113 | 5 | 4 | 297 | 11 | 305 | 7.35e-125 | 360 |
| MS.gene21847.t1 | AT4G14930 | 57.348 | 279 | 108 | 5 | 4 | 276 | 11 | 284 | 4.09e-112 | 327 |
| MS.gene21847.t1 | AT1G72880 | 36.076 | 316 | 171 | 5 | 9 | 294 | 63 | 377 | 7.57e-61 | 198 |
| MS.gene21847.t1 | AT1G72880 | 36.076 | 316 | 171 | 5 | 9 | 294 | 63 | 377 | 7.57e-61 | 198 |
Find 74 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCTTCCTTTGCGGTTTC+TGG | 0.080018 | 5.2:-1134794 | MS.gene21847:intron |
| GGTAGTCAGTGGCATAAATA+AGG | 0.269395 | 5.2:-1134625 | MS.gene21847:CDS |
| GTCATATCCGATGACATTAT+TGG | 0.278609 | 5.2:+1133594 | None:intergenic |
| GCTTCCGACGAGAGGGGTTT+GGG | 0.282212 | 5.2:+1132957 | None:intergenic |
| TCAACTTGTTTGACAGCAAC+AGG | 0.315263 | 5.2:+1134830 | None:intergenic |
| TGCTCCTGGTTTGAGGGCTT+TGG | 0.320529 | 5.2:-1135237 | MS.gene21847:CDS |
| ATTTGTATGTCCAGGGTTAA+AGG | 0.329046 | 5.2:-1133935 | MS.gene21847:intron |
| ATTCTTTATATCAACCAGTA+TGG | 0.333966 | 5.2:+1133853 | None:intergenic |
| AGCTTCCGACGAGAGGGGTT+TGG | 0.341404 | 5.2:+1132956 | None:intergenic |
| ACCTGGTTTACTTACCTATC+AGG | 0.357327 | 5.2:+1135167 | None:intergenic |
| ATTTCCTACAACACCTGATT+TGG | 0.358586 | 5.2:-1134646 | MS.gene21847:CDS |
| TTGTAGCCATTCCTCAAAAT+AGG | 0.371094 | 5.2:+1132986 | None:intergenic |
| CTCGCAAATAAAAGATGTTC+AGG | 0.372141 | 5.2:+1133522 | None:intergenic |
| GGTAAAAGTATCTTTAAGAT+TGG | 0.377853 | 5.2:-1133648 | MS.gene21847:CDS |
| GAGGGCTTTGGTTGAATCCC+TGG | 0.378978 | 5.2:-1135225 | MS.gene21847:CDS |
| ACCAGTATGGTGCTTATGAT+TGG | 0.395152 | 5.2:+1133866 | None:intergenic |
| GTCAAACAAGTTGACATTCA+TGG | 0.403910 | 5.2:-1134821 | MS.gene21847:CDS |
| AATATACCAGTCATATGAAA+TGG | 0.404590 | 5.2:+1134175 | None:intergenic |
| GTATCGATGCTCCTGGTTTG+AGG | 0.406358 | 5.2:-1135244 | MS.gene21847:CDS |
| TCTTAGTCTGTGCTCCTGAT+AGG | 0.419734 | 5.2:-1135181 | MS.gene21847:intron |
| TCCAATCATAAGCACCATAC+TGG | 0.425888 | 5.2:-1133867 | MS.gene21847:CDS |
| TGGAACCGTTGCTTCCTTTG+CGG | 0.426141 | 5.2:-1134801 | MS.gene21847:CDS |
| TATCGATGCTCCTGGTTTGA+GGG | 0.430219 | 5.2:-1135243 | MS.gene21847:CDS |
| ACTCACATAGCCCGCCTTCA+AGG | 0.436515 | 5.2:+1133136 | None:intergenic |
| ACTACCAAATCAGGTGTTGT+AGG | 0.436784 | 5.2:+1134642 | None:intergenic |
| TTATGGTTAGCAACATCGTT+TGG | 0.448421 | 5.2:+1133791 | None:intergenic |
| ATTACCGTTACTCCTCTTGC+TGG | 0.458423 | 5.2:-1133038 | MS.gene21847:CDS |
| CAATCTCCATTTCATATGAC+TGG | 0.460076 | 5.2:-1134181 | MS.gene21847:intron |
| GTTTACTCAGGCACTGTAGC+TGG | 0.466587 | 5.2:-1134236 | MS.gene21847:CDS |
| ATGCCACTGACTACCAAATC+AGG | 0.469346 | 5.2:+1134633 | None:intergenic |
| AAAGTATCTTTAAGATTGGA+TGG | 0.485897 | 5.2:-1133644 | MS.gene21847:CDS |
| GGGTTACAAGCTAACAAGGC+AGG | 0.490829 | 5.2:-1133670 | MS.gene21847:CDS |
| GTAGTCAGTGGCATAAATAA+GGG | 0.494464 | 5.2:-1134624 | MS.gene21847:CDS |
| TTCGTTCTTTGCAGGTACTC+CGG | 0.499552 | 5.2:-1134703 | MS.gene21847:intron |
| AGGTGTATCAGTATCAGTAT+TGG | 0.502952 | 5.2:+1133572 | None:intergenic |
| CCGGCTGATTGCACTTCTCT+CGG | 0.516037 | 5.2:-1134684 | MS.gene21847:CDS |
| CCGTTAGCCATTGTGTGACA+TGG | 0.521413 | 5.2:-1134859 | MS.gene21847:CDS |
| AAACGATGTTGCTAACCATA+AGG | 0.528344 | 5.2:-1133789 | MS.gene21847:intron |
| TACAGATTACACATCCTTGA+AGG | 0.528974 | 5.2:-1133150 | MS.gene21847:CDS |
| TCATATGAAATGGAGATTGA+AGG | 0.532405 | 5.2:+1134185 | None:intergenic |
| CATATGAAATGGAGATTGAA+GGG | 0.535556 | 5.2:+1134186 | None:intergenic |
| ATTCTGATAACAAACGATGA+TGG | 0.543399 | 5.2:-1135266 | MS.gene21847:CDS |
| TTCCCTTTCAGTGTTTACTC+AGG | 0.543522 | 5.2:-1134248 | MS.gene21847:intron |
| CTTCCGACGAGAGGGGTTTG+GGG | 0.545820 | 5.2:+1132958 | None:intergenic |
| CACTGTAGCTGGAGCTCGAG+AGG | 0.556294 | 5.2:-1134225 | MS.gene21847:CDS |
| TGTTGTAGGAAATAGTGCTC+TGG | 0.558048 | 5.2:+1134656 | None:intergenic |
| GCACGAGAGAGACCAGCAAG+AGG | 0.562815 | 5.2:+1133026 | None:intergenic |
| CCGAGAGAAGTGCAATCAGC+CGG | 0.562865 | 5.2:+1134684 | None:intergenic |
| TCAACCAAAGCCCTCAAACC+AGG | 0.573469 | 5.2:+1135233 | None:intergenic |
| CTATAAAGCTTCCGACGAGA+GGG | 0.577851 | 5.2:+1132950 | None:intergenic |
| GAGACCAGCAAGAGGAGTAA+CGG | 0.585644 | 5.2:+1133034 | None:intergenic |
| TAAAGAATCAAAGCTACCCT+GGG | 0.585985 | 5.2:-1133838 | MS.gene21847:CDS |
| GATTACACATCCTTGAAGGC+GGG | 0.587704 | 5.2:-1133146 | MS.gene21847:CDS |
| GATGATGGTATCGATGCTCC+TGG | 0.590611 | 5.2:-1135251 | MS.gene21847:CDS |
| AGAAGGACCAATAATGTCAT+CGG | 0.592757 | 5.2:-1133601 | MS.gene21847:CDS |
| ACTATAAAGCTTCCGACGAG+AGG | 0.593114 | 5.2:+1132949 | None:intergenic |
| ATAAAGAATCAAAGCTACCC+TGG | 0.599661 | 5.2:-1133839 | MS.gene21847:CDS |
| CCATGTCACACAATGGCTAA+CGG | 0.601876 | 5.2:+1134859 | None:intergenic |
| ATAAATAAGGGTAGCAACTG+CGG | 0.609893 | 5.2:-1134612 | MS.gene21847:CDS |
| AAAAGGGTTACAAGCTAACA+AGG | 0.613958 | 5.2:-1133674 | MS.gene21847:intron |
| CAAGTCACCTCTCAGACAGA+AGG | 0.626825 | 5.2:-1133618 | MS.gene21847:CDS |
| GGTTACAAGCTAACAAGGCA+GGG | 0.632843 | 5.2:-1133669 | MS.gene21847:CDS |
| TCTTGCTGGTCTCTCTCGTG+CGG | 0.637394 | 5.2:-1133024 | MS.gene21847:CDS |
| TATTGGTCCTTCTGTCTGAG+AGG | 0.645859 | 5.2:+1133611 | None:intergenic |
| AGAAACCGCAAAGGAAGCAA+CGG | 0.646643 | 5.2:+1134796 | None:intergenic |
| TATAAAGCTTCCGACGAGAG+GGG | 0.648568 | 5.2:+1132951 | None:intergenic |
| ACACCTGATTTGGTAGTCAG+TGG | 0.649746 | 5.2:-1134636 | MS.gene21847:CDS |
| TGTCCCCAAACCCCTCTCGT+CGG | 0.652779 | 5.2:-1132961 | MS.gene21847:CDS |
| CAACTTGTTTGACAGCAACA+GGG | 0.653972 | 5.2:+1134831 | None:intergenic |
| AGATTACACATCCTTGAAGG+CGG | 0.661603 | 5.2:-1133147 | MS.gene21847:CDS |
| GCAGCAAGAGCAAAGTCGTG+TGG | 0.670936 | 5.2:+1133902 | None:intergenic |
| GGTGAAGCCATGTCACACAA+TGG | 0.678364 | 5.2:+1134852 | None:intergenic |
| CAACTAACCAGAAACCGCAA+AGG | 0.682214 | 5.2:+1134787 | None:intergenic |
| GTATCTTTAAGATTGGATGG+AGG | 0.682656 | 5.2:-1133641 | MS.gene21847:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGATTTTAAGTAAAAAAAA+AGG | + | chr5.2:1134767-1134786 | None:intergenic | 10.0% |
| !!! | ATCTTTTATAACTAATTTAT+TGG | - | chr5.2:1134525-1134544 | MS.gene21847:intron | 10.0% |
| !! | ACAATTATAAGCTAAAAAAT+TGG | + | chr5.2:1134158-1134177 | None:intergenic | 15.0% |
| !! | ATTATTACATCATTATTCAT+TGG | + | chr5.2:1135019-1135038 | None:intergenic | 15.0% |
| !! | TAAGTAAAAAAAAAGGAAAA+AGG | + | chr5.2:1134760-1134779 | None:intergenic | 15.0% |
| !! | TTATTACATCATTATTCATT+GGG | + | chr5.2:1135018-1135037 | None:intergenic | 15.0% |
| !!! | CTTTTTGTTAAAAGTTATTT+CGG | - | chr5.2:1133920-1133939 | MS.gene21847:CDS | 15.0% |
| !!! | GTATTTTAAACTAACATAAA+GGG | + | chr5.2:1133272-1133291 | None:intergenic | 15.0% |
| !!! | TGTATTTTAAACTAACATAA+AGG | + | chr5.2:1133273-1133292 | None:intergenic | 15.0% |
| !! | AATATTCAGTAAATCATAAG+AGG | + | chr5.2:1133899-1133918 | None:intergenic | 20.0% |
| !! | ACTTATTACAATATACCTTA+TGG | + | chr5.2:1134469-1134488 | None:intergenic | 20.0% |
| !! | ATATTCAGTAAATCATAAGA+GGG | + | chr5.2:1133898-1133917 | None:intergenic | 20.0% |
| !! | ATTCTTTAATCTCAATCAAA+CGG | + | chr5.2:1133139-1133158 | None:intergenic | 20.0% |
| !! | CTATGTAGAACTAAAAAAAA+GGG | + | chr5.2:1134841-1134860 | None:intergenic | 20.0% |
| !! | CTTATAATTGTAACTGATAA+CGG | - | chr5.2:1134167-1134186 | MS.gene21847:intron | 20.0% |
| !! | TATTACATCATTATTCATTG+GGG | + | chr5.2:1135017-1135036 | None:intergenic | 20.0% |
| !! | TTTATTATATGACATGTAGA+CGG | - | chr5.2:1133302-1133321 | MS.gene21847:intron | 20.0% |
| !!! | AATAATCTCTTAACTTTTGT+AGG | - | chr5.2:1135033-1135052 | MS.gene21847:intron | 20.0% |
| !!! | TACTATTTTTGACCATTTAA+AGG | - | chr5.2:1134280-1134299 | MS.gene21847:intron | 20.0% |
| !!! | TCAATAGAAAAATTTTCAAC+AGG | + | chr5.2:1133799-1133818 | None:intergenic | 20.0% |
| ! | AATATACCAGTCATATGAAA+TGG | + | chr5.2:1134068-1134087 | None:intergenic | 25.0% |
| ! | ACATACAAATAGCCTTTAAA+TGG | + | chr5.2:1134295-1134314 | None:intergenic | 25.0% |
| ! | ACTGATACACCTAAAAATTA+TGG | - | chr5.2:1134679-1134698 | MS.gene21847:CDS | 25.0% |
| ! | ATATTCAAAAAACATTTCCC+AGG | + | chr5.2:1134422-1134441 | None:intergenic | 25.0% |
| ! | ATTCTTTATATCAACCAGTA+TGG | + | chr5.2:1134390-1134409 | None:intergenic | 25.0% |
| ! | CATTTCAAATTTCAAGGAAA+TGG | + | chr5.2:1133874-1133893 | None:intergenic | 25.0% |
| ! | GACTAAGACATTAAAAAGAT+TGG | + | chr5.2:1133047-1133066 | None:intergenic | 25.0% |
| ! | GCTATGTAGAACTAAAAAAA+AGG | + | chr5.2:1134842-1134861 | None:intergenic | 25.0% |
| ! | TAAGAAGCTATTGTTATAGA+AGG | + | chr5.2:1134259-1134278 | None:intergenic | 25.0% |
| ! | TATTCAAAAAACATTTCCCA+GGG | + | chr5.2:1134421-1134440 | None:intergenic | 25.0% |
| !! | ATTTTGCATTTCATAGCAAA+TGG | - | chr5.2:1133748-1133767 | MS.gene21847:intron | 25.0% |
| !! | TCTTAACTTTTGTAGGTAAA+AGG | - | chr5.2:1135040-1135059 | MS.gene21847:intron | 25.0% |
| !!! | AAAGTATCTTTAAGATTGGA+TGG | - | chr5.2:1134596-1134615 | MS.gene21847:intron | 25.0% |
| !!! | GGTAAAAGTATCTTTAAGAT+TGG | - | chr5.2:1134592-1134611 | MS.gene21847:intron | 25.0% |
| AATGAATGTCTCGAGAATTA+TGG | - | chr5.2:1134190-1134209 | MS.gene21847:CDS | 30.0% | |
| ATTCTGATAACAAACGATGA+TGG | - | chr5.2:1132974-1132993 | MS.gene21847:CDS | 30.0% | |
| CACTGCTTAAAGTCTAAAAA+AGG | + | chr5.2:1133696-1133715 | None:intergenic | 30.0% | |
| CATATGAAATGGAGATTGAA+GGG | + | chr5.2:1134057-1134076 | None:intergenic | 30.0% | |
| CTAAACAATCCTAAACTACT+TGG | - | chr5.2:1134957-1134976 | MS.gene21847:intron | 30.0% | |
| GAATATGTTGTAATAGACTG+AGG | - | chr5.2:1134876-1134895 | MS.gene21847:intron | 30.0% | |
| GATGTGAATTCTTTCATGTT+TGG | - | chr5.2:1133200-1133219 | MS.gene21847:intron | 30.0% | |
| TCATATGAAATGGAGATTGA+AGG | + | chr5.2:1134058-1134077 | None:intergenic | 30.0% | |
| TCATCATCTGTTCATAACTT+AGG | + | chr5.2:1133846-1133865 | None:intergenic | 30.0% | |
| TCTATATGATCTTGATCCAA+CGG | - | chr5.2:1133172-1133191 | MS.gene21847:CDS | 30.0% | |
| TGAGCTTATGAAAATGGAAA+TGG | + | chr5.2:1133494-1133513 | None:intergenic | 30.0% | |
| TGCTTAAAGTCTAAAAAAGG+CGG | + | chr5.2:1133693-1133712 | None:intergenic | 30.0% | |
| TGTAGAACTAAAAAAAAGGG+TGG | + | chr5.2:1134838-1134857 | None:intergenic | 30.0% | |
| ! | ATATTTTCAACATGCTTCTG+TGG | - | chr5.2:1134083-1134102 | MS.gene21847:intron | 30.0% |
| !!! | CTTGCAACAATTTTTGAAAC+AGG | + | chr5.2:1133239-1133258 | None:intergenic | 30.0% |
| AAAAGGGTTACAAGCTAACA+AGG | - | chr5.2:1134566-1134585 | MS.gene21847:intron | 35.0% | |
| AAACGATGTTGCTAACCATA+AGG | - | chr5.2:1134451-1134470 | MS.gene21847:intron | 35.0% | |
| AAAGGCTATTTGTATGTCCA+GGG | - | chr5.2:1134298-1134317 | MS.gene21847:intron | 35.0% | |
| AATGTCCATCCAAGTAGTTT+AGG | + | chr5.2:1134969-1134988 | None:intergenic | 35.0% | |
| ACAATCCTAAACTACTTGGA+TGG | - | chr5.2:1134961-1134980 | MS.gene21847:intron | 35.0% | |
| AGAAGGACCAATAATGTCAT+CGG | - | chr5.2:1134639-1134658 | MS.gene21847:CDS | 35.0% | |
| AGGTGTATCAGTATCAGTAT+TGG | + | chr5.2:1134671-1134690 | None:intergenic | 35.0% | |
| ATAAAGAATCAAAGCTACCC+TGG | - | chr5.2:1134401-1134420 | MS.gene21847:intron | 35.0% | |
| ATAAATAAGGGTAGCAACTG+CGG | - | chr5.2:1133628-1133647 | MS.gene21847:CDS | 35.0% | |
| ATTACTCTTTCCTTTAACCC+TGG | + | chr5.2:1134318-1134337 | None:intergenic | 35.0% | |
| ATTTCCTACAACACCTGATT+TGG | - | chr5.2:1133594-1133613 | MS.gene21847:CDS | 35.0% | |
| ATTTGTATGTCCAGGGTTAA+AGG | - | chr5.2:1134305-1134324 | MS.gene21847:intron | 35.0% | |
| CAATCTCCATTTCATATGAC+TGG | - | chr5.2:1134059-1134078 | MS.gene21847:intron | 35.0% | |
| CTATATGAATTCGATCACCA+CGG | + | chr5.2:1133100-1133119 | None:intergenic | 35.0% | |
| CTCGCAAATAAAAGATGTTC+AGG | + | chr5.2:1134721-1134740 | None:intergenic | 35.0% | |
| CTTAAAGTCTAAAAAAGGCG+GGG | + | chr5.2:1133691-1133710 | None:intergenic | 35.0% | |
| GAGGGTCATTTCAAATTTCA+AGG | + | chr5.2:1133880-1133899 | None:intergenic | 35.0% | |
| GCTTAAAGTCTAAAAAAGGC+GGG | + | chr5.2:1133692-1133711 | None:intergenic | 35.0% | |
| GTAGTCAGTGGCATAAATAA+GGG | - | chr5.2:1133616-1133635 | MS.gene21847:CDS | 35.0% | |
| GTCATATCCGATGACATTAT+TGG | + | chr5.2:1134649-1134668 | None:intergenic | 35.0% | |
| TAAAGAATCAAAGCTACCCT+GGG | - | chr5.2:1134402-1134421 | MS.gene21847:intron | 35.0% | |
| TAAAGGCTATTTGTATGTCC+AGG | - | chr5.2:1134297-1134316 | MS.gene21847:intron | 35.0% | |
| TACAGATTACACATCCTTGA+AGG | - | chr5.2:1135090-1135109 | MS.gene21847:intron | 35.0% | |
| TCATTATTCATTGGGGAAAG+AGG | + | chr5.2:1135010-1135029 | None:intergenic | 35.0% | |
| TGAGCTTGAGCTTATGAAAA+TGG | + | chr5.2:1133500-1133519 | None:intergenic | 35.0% | |
| TTAGACTCACAGAACAACTA+TGG | + | chr5.2:1133972-1133991 | None:intergenic | 35.0% | |
| TTATGGTTAGCAACATCGTT+TGG | + | chr5.2:1134452-1134471 | None:intergenic | 35.0% | |
| TTGTAGCCATTCCTCAAAAT+AGG | + | chr5.2:1135257-1135276 | None:intergenic | 35.0% | |
| ! | AGATTGTCAGACCTATTTTG+AGG | - | chr5.2:1135243-1135262 | MS.gene21847:CDS | 35.0% |
| ! | GATGACGTGCCATAATTTTT+AGG | + | chr5.2:1134691-1134710 | None:intergenic | 35.0% |
| ! | GTCAAACAAGTTGACATTCA+TGG | - | chr5.2:1133419-1133438 | MS.gene21847:intron | 35.0% |
| !! | AAAAAGATTGGTGTTGACCA+GGG | + | chr5.2:1133035-1133054 | None:intergenic | 35.0% |
| !! | ACATCTTTTATTTGCGAGAG+AGG | - | chr5.2:1134723-1134742 | MS.gene21847:intron | 35.0% |
| !! | GACTATTTTTCGTTCTTTGC+AGG | - | chr5.2:1133529-1133548 | MS.gene21847:CDS | 35.0% |
| !! | GTATCTTTAAGATTGGATGG+AGG | - | chr5.2:1134599-1134618 | MS.gene21847:intron | 35.0% |
| !! | TAAAAAGATTGGTGTTGACC+AGG | + | chr5.2:1133036-1133055 | None:intergenic | 35.0% |
| ACCAGTATGGTGCTTATGAT+TGG | + | chr5.2:1134377-1134396 | None:intergenic | 40.0% | |
| ACCTGGTTTACTTACCTATC+AGG | + | chr5.2:1133076-1133095 | None:intergenic | 40.0% | |
| AGATTACACATCCTTGAAGG+CGG | - | chr5.2:1135093-1135112 | MS.gene21847:intron | 40.0% | |
| GAATTCACATCAATGACCGT+TGG | + | chr5.2:1133191-1133210 | None:intergenic | 40.0% | |
| GGTAGTCAGTGGCATAAATA+AGG | - | chr5.2:1133615-1133634 | MS.gene21847:CDS | 40.0% | |
| TCCAATCATAAGCACCATAC+TGG | - | chr5.2:1134373-1134392 | MS.gene21847:intron | 40.0% | |
| TCCTGATAGGTAAGTAAACC+AGG | - | chr5.2:1133072-1133091 | MS.gene21847:intron | 40.0% | |
| TGCCTGAGTAAACACTGAAA+GGG | + | chr5.2:1133997-1134016 | None:intergenic | 40.0% | |
| TGTTGTAGGAAATAGTGCTC+TGG | + | chr5.2:1133587-1133606 | None:intergenic | 40.0% | |
| TTATTCATTGGGGAAAGAGG+AGG | + | chr5.2:1135007-1135026 | None:intergenic | 40.0% | |
| TTCCCTTTCAGTGTTTACTC+AGG | - | chr5.2:1133992-1134011 | MS.gene21847:intron | 40.0% | |
| ! | ACTACCAAATCAGGTGTTGT+AGG | + | chr5.2:1133601-1133620 | None:intergenic | 40.0% |
| ! | CAACTTGTTTGACAGCAACA+GGG | + | chr5.2:1133412-1133431 | None:intergenic | 40.0% |
| ! | TCAACTTGTTTGACAGCAAC+AGG | + | chr5.2:1133413-1133432 | None:intergenic | 40.0% |
| !! | CTTTTATTTGCGAGAGAGGT+AGG | - | chr5.2:1134727-1134746 | MS.gene21847:intron | 40.0% |
| !! | GAAGTTGATGCTAAGTTCTC+TGG | - | chr5.2:1134930-1134949 | MS.gene21847:intron | 40.0% |
| !! | GTCAGACCTATTTTGAGGAA+TGG | - | chr5.2:1135248-1135267 | MS.gene21847:CDS | 40.0% |
| AAAGGGTGGAGTTCATCTGA+AGG | + | chr5.2:1134824-1134843 | None:intergenic | 45.0% | |
| AGAAACCGCAAAGGAAGCAA+CGG | + | chr5.2:1133447-1133466 | None:intergenic | 45.0% | |
| ATTACCGTTACTCCTCTTGC+TGG | - | chr5.2:1135202-1135221 | MS.gene21847:CDS | 45.0% | |
| CAACTAACCAGAAACCGCAA+AGG | + | chr5.2:1133456-1133475 | None:intergenic | 45.0% | |
| CCATGTCACACAATGGCTAA+CGG | + | chr5.2:1133384-1133403 | None:intergenic | 45.0% | |
| CTATAAAGCTTCCGACGAGA+GGG | + | chr5.2:1135293-1135312 | None:intergenic | 45.0% | |
| GATTACACATCCTTGAAGGC+GGG | - | chr5.2:1135094-1135113 | MS.gene21847:intron | 45.0% | |
| GGTTACAAGCTAACAAGGCA+GGG | - | chr5.2:1134571-1134590 | MS.gene21847:intron | 45.0% | |
| GTCGTCTGTGCATGGAAAAA+GGG | - | chr5.2:1134550-1134569 | MS.gene21847:intron | 45.0% | |
| GTGCCTGAGTAAACACTGAA+AGG | + | chr5.2:1133998-1134017 | None:intergenic | 45.0% | |
| TATAAAGCTTCCGACGAGAG+GGG | + | chr5.2:1135292-1135311 | None:intergenic | 45.0% | |
| TATTGGTCCTTCTGTCTGAG+AGG | + | chr5.2:1134632-1134651 | None:intergenic | 45.0% | |
| TCTTAGTCTGTGCTCCTGAT+AGG | - | chr5.2:1133059-1133078 | MS.gene21847:intron | 45.0% | |
| TGTCGTCTGTGCATGGAAAA+AGG | - | chr5.2:1134549-1134568 | MS.gene21847:intron | 45.0% | |
| TTCGTTCTTTGCAGGTACTC+CGG | - | chr5.2:1133537-1133556 | MS.gene21847:CDS | 45.0% | |
| ! | ATGCCACTGACTACCAAATC+AGG | + | chr5.2:1133610-1133629 | None:intergenic | 45.0% |
| ! | TATCGATGCTCCTGGTTTGA+GGG | - | chr5.2:1132997-1133016 | MS.gene21847:CDS | 45.0% |
| ! | TATTGGTTGTCGTCTGTGCA+TGG | - | chr5.2:1134542-1134561 | MS.gene21847:intron | 45.0% |
| !! | ACACCTGATTTGGTAGTCAG+TGG | - | chr5.2:1133604-1133623 | MS.gene21847:CDS | 45.0% |
| !! | CTTTGCGGTTTCTGGTTAGT+TGG | - | chr5.2:1133454-1133473 | MS.gene21847:intron | 45.0% |
| AATTCGATCACCACGGAACC+TGG | + | chr5.2:1133093-1133112 | None:intergenic | 50.0% | |
| CAAGTCACCTCTCAGACAGA+AGG | - | chr5.2:1134622-1134641 | MS.gene21847:CDS | 50.0% | |
| CCGTTAGCCATTGTGTGACA+TGG | - | chr5.2:1133381-1133400 | MS.gene21847:intron | 50.0% | |
| CTAAAAAAGGCGGGGACATG+AGG | + | chr5.2:1133683-1133702 | None:intergenic | 50.0% | |
| GAGACCAGCAAGAGGAGTAA+CGG | + | chr5.2:1135209-1135228 | None:intergenic | 50.0% | |
| GGGTTACAAGCTAACAAGGC+AGG | - | chr5.2:1134570-1134589 | MS.gene21847:intron | 50.0% | |
| GGTAAGTAAACCAGGTTCCG+TGG | - | chr5.2:1133080-1133099 | MS.gene21847:intron | 50.0% | |
| GGTGAAGCCATGTCACACAA+TGG | + | chr5.2:1133391-1133410 | None:intergenic | 50.0% | |
| GTTGCTTCCTTTGCGGTTTC+TGG | - | chr5.2:1133446-1133465 | MS.gene21847:intron | 50.0% | |
| TCAACCAAAGCCCTCAAACC+AGG | + | chr5.2:1133010-1133029 | None:intergenic | 50.0% | |
| TGGAACCGTTGCTTCCTTTG+CGG | - | chr5.2:1133439-1133458 | MS.gene21847:intron | 50.0% | |
| ! | GTATCGATGCTCCTGGTTTG+AGG | - | chr5.2:1132996-1133015 | MS.gene21847:CDS | 50.0% |
| ! | GTTTACTCAGGCACTGTAGC+TGG | - | chr5.2:1134004-1134023 | MS.gene21847:intron | 50.0% |
| !! | GATGATGGTATCGATGCTCC+TGG | - | chr5.2:1132989-1133008 | MS.gene21847:CDS | 50.0% |
| AAAAAGGCGGGGACATGAGG+AGG | + | chr5.2:1133680-1133699 | None:intergenic | 55.0% | |
| AAGAGGAGGCGAGGAGGATT+AGG | + | chr5.2:1134993-1135012 | None:intergenic | 55.0% | |
| ACTCACATAGCCCGCCTTCA+AGG | + | chr5.2:1135107-1135126 | None:intergenic | 55.0% | |
| CCGGCTGATTGCACTTCTCT+CGG | - | chr5.2:1133556-1133575 | MS.gene21847:CDS | 55.0% | |
| GCAGCAAGAGCAAAGTCGTG+TGG | + | chr5.2:1134341-1134360 | None:intergenic | 55.0% | |
| ! | CCGAGAGAAGTGCAATCAGC+CGG | + | chr5.2:1133559-1133578 | None:intergenic | 55.0% |
| ! | GAGGGCTTTGGTTGAATCCC+TGG | - | chr5.2:1133015-1133034 | MS.gene21847:CDS | 55.0% |
| ! | TCTTGCTGGTCTCTCTCGTG+CGG | - | chr5.2:1135216-1135235 | MS.gene21847:CDS | 55.0% |
| ! | TGCTCCTGGTTTGAGGGCTT+TGG | - | chr5.2:1133003-1133022 | MS.gene21847:CDS | 55.0% |
| AGCTTCCGACGAGAGGGGTT+TGG | + | chr5.2:1135287-1135306 | None:intergenic | 60.0% | |
| CACTGTAGCTGGAGCTCGAG+AGG | - | chr5.2:1134015-1134034 | MS.gene21847:intron | 60.0% | |
| CATTGGGGAAAGAGGAGGCG+AGG | + | chr5.2:1135002-1135021 | None:intergenic | 60.0% | |
| CTTCCGACGAGAGGGGTTTG+GGG | + | chr5.2:1135285-1135304 | None:intergenic | 60.0% | |
| GCACGAGAGAGACCAGCAAG+AGG | + | chr5.2:1135217-1135236 | None:intergenic | 60.0% | |
| GCTTCCGACGAGAGGGGTTT+GGG | + | chr5.2:1135286-1135305 | None:intergenic | 60.0% | |
| TGTCCCCAAACCCCTCTCGT+CGG | - | chr5.2:1135279-1135298 | MS.gene21847:CDS | 60.0% | |
| TGGGGAAAGAGGAGGCGAGG+AGG | + | chr5.2:1134999-1135018 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 1132950 | 1135312 | 1132950 | ID=MS.gene21847 |
| chr5.2 | mRNA | 1132950 | 1135312 | 1132950 | ID=MS.gene21847.t1;Parent=MS.gene21847 |
| chr5.2 | exon | 1135182 | 1135312 | 1135182 | ID=MS.gene21847.t1.exon1;Parent=MS.gene21847.t1 |
| chr5.2 | CDS | 1135182 | 1135312 | 1135182 | ID=cds.MS.gene21847.t1;Parent=MS.gene21847.t1 |
| chr5.2 | exon | 1134795 | 1134892 | 1134795 | ID=MS.gene21847.t1.exon2;Parent=MS.gene21847.t1 |
| chr5.2 | CDS | 1134795 | 1134892 | 1134795 | ID=cds.MS.gene21847.t1;Parent=MS.gene21847.t1 |
| chr5.2 | exon | 1134603 | 1134711 | 1134603 | ID=MS.gene21847.t1.exon3;Parent=MS.gene21847.t1 |
| chr5.2 | CDS | 1134603 | 1134711 | 1134603 | ID=cds.MS.gene21847.t1;Parent=MS.gene21847.t1 |
| chr5.2 | exon | 1134182 | 1134259 | 1134182 | ID=MS.gene21847.t1.exon4;Parent=MS.gene21847.t1 |
| chr5.2 | CDS | 1134182 | 1134259 | 1134182 | ID=cds.MS.gene21847.t1;Parent=MS.gene21847.t1 |
| chr5.2 | exon | 1133790 | 1133943 | 1133790 | ID=MS.gene21847.t1.exon5;Parent=MS.gene21847.t1 |
| chr5.2 | CDS | 1133790 | 1133943 | 1133790 | ID=cds.MS.gene21847.t1;Parent=MS.gene21847.t1 |
| chr5.2 | exon | 1133518 | 1133691 | 1133518 | ID=MS.gene21847.t1.exon6;Parent=MS.gene21847.t1 |
| chr5.2 | CDS | 1133518 | 1133691 | 1133518 | ID=cds.MS.gene21847.t1;Parent=MS.gene21847.t1 |
| chr5.2 | exon | 1133142 | 1133207 | 1133142 | ID=MS.gene21847.t1.exon7;Parent=MS.gene21847.t1 |
| chr5.2 | CDS | 1133142 | 1133207 | 1133142 | ID=cds.MS.gene21847.t1;Parent=MS.gene21847.t1 |
| chr5.2 | exon | 1132950 | 1133060 | 1132950 | ID=MS.gene21847.t1.exon8;Parent=MS.gene21847.t1 |
| chr5.2 | CDS | 1132950 | 1133060 | 1132950 | ID=cds.MS.gene21847.t1;Parent=MS.gene21847.t1 |
| Gene Sequence |
| Protein sequence |
