Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24199.t1 | XP_003589380.1 | 99.5 | 206 | 1 | 0 | 1 | 206 | 1 | 206 | 2.80E-110 | 407.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24199.t1 | Q9FKC0 | 85.4 | 206 | 30 | 0 | 1 | 206 | 1 | 206 | 3.6e-98 | 359.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24199.t1 | B7FMG6 | 99.5 | 206 | 1 | 0 | 1 | 206 | 1 | 206 | 2.0e-110 | 407.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24199.t1 | MTR_1g023590 | 99.515 | 206 | 1 | 0 | 1 | 206 | 1 | 206 | 7.35e-150 | 414 |
| MS.gene24199.t1 | MTR_7g057770 | 94.175 | 206 | 12 | 0 | 1 | 206 | 1 | 206 | 9.99e-143 | 396 |
| MS.gene24199.t1 | MTR_5g083790 | 91.262 | 206 | 18 | 0 | 1 | 206 | 1 | 206 | 1.51e-137 | 383 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24199.t1 | AT5G48760 | 85.437 | 206 | 30 | 0 | 1 | 206 | 1 | 206 | 8.50e-131 | 366 |
| MS.gene24199.t1 | AT5G48760 | 85.437 | 206 | 30 | 0 | 1 | 206 | 1 | 206 | 8.50e-131 | 366 |
| MS.gene24199.t1 | AT4G13170 | 84.951 | 206 | 31 | 0 | 1 | 206 | 1 | 206 | 2.66e-129 | 362 |
| MS.gene24199.t1 | AT3G07110 | 84.466 | 206 | 32 | 0 | 1 | 206 | 1 | 206 | 3.17e-129 | 362 |
| MS.gene24199.t1 | AT3G07110 | 84.058 | 207 | 32 | 1 | 1 | 206 | 1 | 207 | 1.43e-127 | 358 |
| MS.gene24199.t1 | AT3G24830 | 83.495 | 206 | 34 | 0 | 1 | 206 | 1 | 206 | 1.61e-127 | 358 |
Find 61 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGGTCCTATTCACTTTA+GGG | 0.192347 | 1.2:-1484420 | MS.gene24199:CDS |
| CTCATGGTCCTATTCACTTT+AGG | 0.198145 | 1.2:-1484421 | MS.gene24199:CDS |
| GGGCTCCCTCTAAGATCTTT+TGG | 0.279612 | 1.2:-1484400 | MS.gene24199:CDS |
| GACGGCCGAGCATGTGGTGG+CGG | 0.371739 | 1.2:+1484588 | None:intergenic |
| GGGAGCAAGGACTTCAAGTT+GGG | 0.380650 | 1.2:+1481217 | None:intergenic |
| TATAGGAGCTGGAGGATAAG+AGG | 0.397991 | 1.2:-1481331 | MS.gene24199:intron |
| TGTGAAGAAATTTGTGCTTC+AGG | 0.399041 | 1.2:-1484509 | MS.gene24199:CDS |
| TGAAGTATATGAGATTTCTA+AGG | 0.407625 | 1.2:-1484466 | MS.gene24199:CDS |
| GGCTGCACTCGCGCGATTGA+AGG | 0.416813 | 1.2:-1481692 | MS.gene24199:CDS |
| GAGGAAGGAACGCGTAGGTT+TGG | 0.419799 | 1.2:-1481312 | MS.gene24199:CDS |
| TAGGGTGTTGAGACTTCAAA+AGG | 0.434162 | 1.2:-1481509 | MS.gene24199:CDS |
| ATCCTCTTGATCTTGTCATA+TGG | 0.437541 | 1.2:+1481649 | None:intergenic |
| CGGGAGCAAGGACTTCAAGT+TGG | 0.439216 | 1.2:+1481216 | None:intergenic |
| AATAGTACTCAGTACTTAAC+GGG | 0.449959 | 1.2:+1481197 | None:intergenic |
| AAATAGTACTCAGTACTTAA+CGG | 0.452401 | 1.2:+1481196 | None:intergenic |
| GAGGGAGCCCTAAAGTGAAT+AGG | 0.470476 | 1.2:+1484413 | None:intergenic |
| GGTTCTTACTTGAGAGCATC+GGG | 0.471713 | 1.2:+1481619 | None:intergenic |
| AGAAGCTGCTCAATAAATTG+AGG | 0.480348 | 1.2:-1481277 | MS.gene24199:CDS |
| ATATGAGATTTCTAAGGAAG+AGG | 0.501956 | 1.2:-1484460 | MS.gene24199:CDS |
| CTTAGCGCAGATGCCTGATC+CGG | 0.503229 | 1.2:+1484628 | None:intergenic |
| CGCGCGATTGAAGGTCTATG+AGG | 0.509761 | 1.2:-1481683 | MS.gene24199:CDS |
| GAAGCTGCTCAATAAATTGA+GGG | 0.519049 | 1.2:-1481276 | MS.gene24199:CDS |
| GACGCCCGCCACCACATGCT+CGG | 0.519214 | 1.2:-1484593 | MS.gene24199:CDS |
| ACGGCCGAGCATGTGGTGGC+GGG | 0.522437 | 1.2:+1484589 | None:intergenic |
| AGTGCGCCAAAAGATCTTAG+AGG | 0.534021 | 1.2:+1484394 | None:intergenic |
| TGGTTCTTACTTGAGAGCAT+CGG | 0.539745 | 1.2:+1481618 | None:intergenic |
| TTCTTGTTTATAGGAGCTGG+AGG | 0.546787 | 1.2:-1481339 | MS.gene24199:intron |
| GTCGCAAAGGAGCTGCTCAA+TGG | 0.550130 | 1.2:-1484554 | MS.gene24199:CDS |
| GGACACAAATACTGCTTGCT+CGG | 0.550212 | 1.2:-1481487 | MS.gene24199:CDS |
| GAGCAGCTCCTTTGCGACAA+TGG | 0.550375 | 1.2:+1484559 | None:intergenic |
| ATGAATACTAAACCTTCTCA+TGG | 0.560213 | 1.2:-1484437 | MS.gene24199:CDS |
| AGTTGTCATCAGAGGTTGGA+TGG | 0.565112 | 1.2:-1481462 | MS.gene24199:CDS |
| AGGCAAGACGGCCGAGCATG+TGG | 0.572354 | 1.2:+1484582 | None:intergenic |
| TTGATCTTGTCATATGGAGG+AGG | 0.574582 | 1.2:+1481655 | None:intergenic |
| CTCCATATGACAAGATCAAG+AGG | 0.577162 | 1.2:-1481651 | MS.gene24199:CDS |
| TCTTGCCTCCATTGTCGCAA+AGG | 0.579194 | 1.2:-1484567 | MS.gene24199:CDS |
| TCAGAGGTTGGATGGAACTA+CGG | 0.586349 | 1.2:-1481454 | MS.gene24199:CDS |
| GGAGCTGGAGGATAAGAGGA+AGG | 0.587458 | 1.2:-1481327 | MS.gene24199:CDS |
| GAACTACGGTGGCATCATCA+AGG | 0.590785 | 1.2:-1481440 | MS.gene24199:intron |
| GGACAGTTGTCATCAGAGGT+TGG | 0.592395 | 1.2:-1481466 | MS.gene24199:CDS |
| CTCTTGATCTTGTCATATGG+AGG | 0.593959 | 1.2:+1481652 | None:intergenic |
| GGAGCTGCTCAATGGTCAGA+AGG | 0.597676 | 1.2:-1484546 | MS.gene24199:CDS |
| GCTCGGACAGTTGTCATCAG+AGG | 0.597789 | 1.2:-1481470 | MS.gene24199:CDS |
| GTGCGCCAAAAGATCTTAGA+GGG | 0.602717 | 1.2:+1484395 | None:intergenic |
| CAAGACGGCCGAGCATGTGG+TGG | 0.603581 | 1.2:+1484585 | None:intergenic |
| TTGCGACAATGGAGGCAAGA+CGG | 0.613146 | 1.2:+1484570 | None:intergenic |
| AGGGTGTTGAGACTTCAAAA+GGG | 0.620018 | 1.2:-1481508 | MS.gene24199:CDS |
| GCGCGATTGAAGGTCTATGA+GGG | 0.624683 | 1.2:-1481682 | MS.gene24199:CDS |
| CAGCTCCTTTGCGACAATGG+AGG | 0.625227 | 1.2:+1484562 | None:intergenic |
| ATATGACAAGATCAAGAGGA+TGG | 0.634497 | 1.2:-1481647 | MS.gene24199:CDS |
| GGAGCAAGGACTTCAAGTTG+GGG | 0.640419 | 1.2:+1481218 | None:intergenic |
| TCTCCACGCTTAGTCTTGTG+TGG | 0.642845 | 1.2:+1481715 | None:intergenic |
| ATACCACACAAGACTAAGCG+TGG | 0.643021 | 1.2:-1481718 | MS.gene24199:CDS |
| AGCAAGGACTTCAAGTTGGG+GGG | 0.650449 | 1.2:+1481220 | None:intergenic |
| GCTGCTCAATGGTCAGAAGG+TGG | 0.667003 | 1.2:-1484543 | MS.gene24199:CDS |
| ACACAAGACTAAGCGTGGAG+AGG | 0.667676 | 1.2:-1481713 | MS.gene24199:CDS |
| AAGTGAATAGGACCATGAGA+AGG | 0.669515 | 1.2:+1484425 | None:intergenic |
| GATAAGAGGAAGGAACGCGT+AGG | 0.683185 | 1.2:-1481317 | MS.gene24199:CDS |
| GAGCAAGGACTTCAAGTTGG+GGG | 0.688692 | 1.2:+1481219 | None:intergenic |
| GAAGAAATTTGTGCTTCAGG+TGG | 0.691821 | 1.2:-1484506 | MS.gene24199:CDS |
| GAGGTTGGATGGAACTACGG+TGG | 0.706495 | 1.2:-1481451 | MS.gene24199:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTTATAAATTTATT+AGG | - | chr1.2:1483020-1483039 | MS.gene24199:intron | 0.0% |
| !!! | ATTTTTGTTTAATTTGATAT+TGG | - | chr1.2:1481541-1481560 | MS.gene24199:intron | 10.0% |
| !!! | GTTTTTTTATATGATTTATA+AGG | - | chr1.2:1483087-1483106 | MS.gene24199:intron | 10.0% |
| !!! | TTTTTGTTTAATTTGATATT+GGG | - | chr1.2:1481542-1481561 | MS.gene24199:intron | 10.0% |
| !!! | TTTTTTGATTATTTGATAAT+GGG | - | chr1.2:1482958-1482977 | MS.gene24199:intron | 10.0% |
| !!! | TTTTTTTGATTATTTGATAA+TGG | - | chr1.2:1482957-1482976 | MS.gene24199:intron | 10.0% |
| !! | ATATGATTTATAAGGTTATT+TGG | - | chr1.2:1483095-1483114 | MS.gene24199:intron | 15.0% |
| !! | CTGTAAATTATACAATAAAA+TGG | + | chr1.2:1484245-1484264 | None:intergenic | 15.0% |
| !! | TTTGATTATTAGATTGAATT+GGG | - | chr1.2:1481864-1481883 | MS.gene24199:intron | 15.0% |
| !!! | ATGATTTGTGATTATAAATA+TGG | - | chr1.2:1481994-1482013 | MS.gene24199:intron | 15.0% |
| !!! | TATGTTATTTCTATAACAAA+AGG | + | chr1.2:1482270-1482289 | None:intergenic | 15.0% |
| !!! | TGTATTTGTATTTGTTTTTT+AGG | - | chr1.2:1481699-1481718 | MS.gene24199:CDS | 15.0% |
| !!! | TTCCTTAATTAAATTTTGTT+GGG | - | chr1.2:1482928-1482947 | MS.gene24199:intron | 15.0% |
| !!! | TTTCCTTAATTAAATTTTGT+TGG | - | chr1.2:1482927-1482946 | MS.gene24199:intron | 15.0% |
| !! | AACCCAACAAAATTTAATTA+AGG | + | chr1.2:1482933-1482952 | None:intergenic | 20.0% |
| !! | AGTTAATAAGTCAATTGAAA+TGG | + | chr1.2:1482022-1482041 | None:intergenic | 20.0% |
| !! | ATTTGATAGAATTATGAAGT+TGG | - | chr1.2:1482438-1482457 | MS.gene24199:intron | 20.0% |
| !! | CAATTCTATCAAATAAACAA+AGG | + | chr1.2:1482783-1482802 | None:intergenic | 20.0% |
| !! | GTTTGATTATTAGATTGAAT+TGG | - | chr1.2:1481863-1481882 | MS.gene24199:intron | 20.0% |
| !! | TTTACAAGAACTTATGAAAA+TGG | - | chr1.2:1482078-1482097 | MS.gene24199:intron | 20.0% |
| !! | TTTGCTTATATGATTGAATT+GGG | - | chr1.2:1483188-1483207 | MS.gene24199:intron | 20.0% |
| !!! | AAAGTGTTGTTATTTTTTAG+AGG | - | chr1.2:1482818-1482837 | MS.gene24199:intron | 20.0% |
| !!! | AAGTGTTGTTATTTTTTAGA+GGG | - | chr1.2:1482819-1482838 | MS.gene24199:intron | 20.0% |
| !!! | ATGTGTTTTATAAGGTTATT+TGG | - | chr1.2:1481784-1481803 | MS.gene24199:intron | 20.0% |
| !!! | ATTATTAGCATTTTGTCTAT+GGG | - | chr1.2:1481640-1481659 | MS.gene24199:CDS | 20.0% |
| !!! | CTTTTTGTTGTTGAATTAAA+AGG | - | chr1.2:1484271-1484290 | MS.gene24199:intron | 20.0% |
| !!! | GTATTTGTTTTTTAGGAATT+TGG | - | chr1.2:1481706-1481725 | MS.gene24199:CDS | 20.0% |
| !!! | GTGATTTTTTTTGTTTTGTT+TGG | - | chr1.2:1484422-1484441 | MS.gene24199:CDS | 20.0% |
| !!! | GTGGTTTTGAATTTTTTAAT+TGG | - | chr1.2:1484477-1484496 | MS.gene24199:CDS | 20.0% |
| !!! | GTTTTGAAGTGATTAATTAA+GGG | - | chr1.2:1482384-1482403 | MS.gene24199:intron | 20.0% |
| !!! | TATTATTAGCATTTTGTCTA+TGG | - | chr1.2:1481639-1481658 | MS.gene24199:CDS | 20.0% |
| !!! | TTAATTGGTTTCTTGTTTAT+AGG | - | chr1.2:1484492-1484511 | MS.gene24199:CDS | 20.0% |
| !!! | TTCAAGTGGTTATTTAATTT+TGG | - | chr1.2:1483968-1483987 | MS.gene24199:intron | 20.0% |
| !!! | TTTGTATTTGTTTAGTTTGA+CGG | - | chr1.2:1481676-1481695 | MS.gene24199:CDS | 20.0% |
| !!! | TTTGTTGATTGGATTATAAT+GGG | - | chr1.2:1481511-1481530 | MS.gene24199:intron | 20.0% |
| !!! | TTTTATTGTGTTTTGTTGAT+TGG | - | chr1.2:1481500-1481519 | MS.gene24199:CDS | 20.0% |
| !!! | TTTTGTTGATTGGATTATAA+TGG | - | chr1.2:1481510-1481529 | MS.gene24199:intron | 20.0% |
| ! | AGATCTATTTATTCAGCATA+TGG | + | chr1.2:1481753-1481772 | None:intergenic | 25.0% |
| ! | ATCTGATAGAATCATAAAGT+TGG | - | chr1.2:1483660-1483679 | MS.gene24199:intron | 25.0% |
| ! | CAAAAAAGAACATTATACGT+GGG | + | chr1.2:1482360-1482379 | None:intergenic | 25.0% |
| ! | GTATAAAAAAACAGAGTAAG+TGG | + | chr1.2:1481615-1481634 | None:intergenic | 25.0% |
| ! | GTTTGCTTATATGATTGAAT+TGG | - | chr1.2:1483187-1483206 | MS.gene24199:intron | 25.0% |
| ! | TGAAGTATATGAGATTTCTA+AGG | - | chr1.2:1481374-1481393 | MS.gene24199:intron | 25.0% |
| ! | TGAATGAGTGAATGAAATTA+GGG | - | chr1.2:1484313-1484332 | MS.gene24199:intron | 25.0% |
| ! | TTAGCTTATTGATGTTTGAA+TGG | - | chr1.2:1482580-1482599 | MS.gene24199:intron | 25.0% |
| ! | TTGATTAGGTAGAATGTATT+GGG | - | chr1.2:1482706-1482725 | MS.gene24199:intron | 25.0% |
| ! | TTTGATTAGGTAGAATGTAT+TGG | - | chr1.2:1482705-1482724 | MS.gene24199:intron | 25.0% |
| !! | ACATAGAATGTCTTTTTCTA+TGG | - | chr1.2:1481959-1481978 | MS.gene24199:intron | 25.0% |
| !! | ATAGAAAAAGTGTAGATCTT+AGG | - | chr1.2:1483817-1483836 | MS.gene24199:intron | 25.0% |
| !! | ATTTAGAATGATTAGACTCA+TGG | - | chr1.2:1483757-1483776 | MS.gene24199:intron | 25.0% |
| !! | GAATTTGATCAACAATTTTG+TGG | - | chr1.2:1484458-1484477 | MS.gene24199:CDS | 25.0% |
| !! | GATGTGTAATGTGTTTTATA+AGG | - | chr1.2:1481776-1481795 | MS.gene24199:intron | 25.0% |
| !! | GTTTGGACTAGATATAATTT+AGG | - | chr1.2:1483140-1483159 | MS.gene24199:intron | 25.0% |
| !! | TAAAAGTGTAGATAATAGGA+GGG | - | chr1.2:1483856-1483875 | MS.gene24199:intron | 25.0% |
| !! | TATGTAGAATGCTTTCTTTT+GGG | - | chr1.2:1482864-1482883 | MS.gene24199:intron | 25.0% |
| !! | TTATGTAGAATGCTTTCTTT+TGG | - | chr1.2:1482863-1482882 | MS.gene24199:intron | 25.0% |
| !! | TTCGTAAAAGTGTAGATAAT+AGG | - | chr1.2:1483852-1483871 | MS.gene24199:intron | 25.0% |
| !!! | AGAAGTGTTCTTTGTTTATT+TGG | - | chr1.2:1482515-1482534 | MS.gene24199:intron | 25.0% |
| !!! | CTTATTTTCATAAACTCTCT+AGG | - | chr1.2:1483423-1483442 | MS.gene24199:intron | 25.0% |
| !!! | GAAAAGTGTTATTAGAAATG+TGG | - | chr1.2:1482663-1482682 | MS.gene24199:intron | 25.0% |
| !!! | GGTTTTGAAGTGATTAATTA+AGG | - | chr1.2:1482383-1482402 | MS.gene24199:intron | 25.0% |
| !!! | GTATAATGTTCTTTTTTGGA+GGG | - | chr1.2:1482362-1482381 | MS.gene24199:intron | 25.0% |
| !!! | TACGTTATTTCTACAACAAA+AGG | + | chr1.2:1482210-1482229 | None:intergenic | 25.0% |
| !!! | TTGGCTTTGTGATATAATTT+AGG | - | chr1.2:1481816-1481835 | MS.gene24199:intron | 25.0% |
| !!! | TTGTTTTTTAGGAATTTGGT+AGG | - | chr1.2:1481710-1481729 | MS.gene24199:CDS | 25.0% |
| AAACACCAAATTACCTTATG+GGG | + | chr1.2:1482556-1482575 | None:intergenic | 30.0% | |
| ACAAACACCAAATTACCTTA+TGG | + | chr1.2:1482558-1482577 | None:intergenic | 30.0% | |
| ATGAATACTAAACCTTCTCA+TGG | - | chr1.2:1481403-1481422 | MS.gene24199:intron | 30.0% | |
| CAAACACCAAATTACCTTAT+GGG | + | chr1.2:1482557-1482576 | None:intergenic | 30.0% | |
| CCAAAAAAGAACATTATACG+TGG | + | chr1.2:1482361-1482380 | None:intergenic | 30.0% | |
| CTGAATGAGTGAATGAAATT+AGG | - | chr1.2:1484312-1484331 | MS.gene24199:intron | 30.0% | |
| GCTTGATTATGCATGTTATT+TGG | - | chr1.2:1483316-1483335 | MS.gene24199:intron | 30.0% | |
| GTTGAACGTCTTTGTATATT+TGG | - | chr1.2:1484006-1484025 | MS.gene24199:intron | 30.0% | |
| TAGATCTTAGGATCATAACA+AGG | - | chr1.2:1483829-1483848 | MS.gene24199:intron | 30.0% | |
| TAGTTTATCTAAACATGCCT+AGG | - | chr1.2:1483556-1483575 | MS.gene24199:intron | 30.0% | |
| TTATGAAAACAGCTTATGAC+AGG | - | chr1.2:1483383-1483402 | MS.gene24199:intron | 30.0% | |
| TTATGAAAATGGCTTATGAC+AGG | - | chr1.2:1482089-1482108 | MS.gene24199:intron | 30.0% | |
| TTGAAGTGATTAATGAATCC+AGG | - | chr1.2:1483605-1483624 | MS.gene24199:intron | 30.0% | |
| TTGAATGTTGTGTTATGTTC+CGG | - | chr1.2:1482482-1482501 | MS.gene24199:intron | 30.0% | |
| TTGAATGTTGTGTTGTGTTA+TGG | - | chr1.2:1483707-1483726 | MS.gene24199:intron | 30.0% | |
| TTTGTCTATGGGATTTCATT+GGG | - | chr1.2:1481651-1481670 | MS.gene24199:CDS | 30.0% | |
| ! | ACAAAACCACAAAACACTTT+TGG | + | chr1.2:1482898-1482917 | None:intergenic | 30.0% |
| ! | AGAATGTCTTTTTCTATGGA+GGG | - | chr1.2:1481963-1481982 | MS.gene24199:intron | 30.0% |
| ! | ATATGAGATTTCTAAGGAAG+AGG | - | chr1.2:1481380-1481399 | MS.gene24199:intron | 30.0% |
| ! | ATATGTAGAATGCTGTCTTT+TGG | - | chr1.2:1483896-1483915 | MS.gene24199:intron | 30.0% |
| ! | GTAAAAGTGTAGATAATAGG+AGG | - | chr1.2:1483855-1483874 | MS.gene24199:intron | 30.0% |
| ! | TAGAATGTCTTTTTCTATGG+AGG | - | chr1.2:1481962-1481981 | MS.gene24199:intron | 30.0% |
| ! | TTTTGTCTATGGGATTTCAT+TGG | - | chr1.2:1481650-1481669 | MS.gene24199:CDS | 30.0% |
| !! | AACTTTAAAACAATGCATCC+TGG | + | chr1.2:1483626-1483645 | None:intergenic | 30.0% |
| !! | ATTAGGAAGTGTTGATATTG+TGG | - | chr1.2:1483037-1483056 | MS.gene24199:intron | 30.0% |
| !! | GGTTATTTGGTGTTTGTAAT+TGG | - | chr1.2:1481797-1481816 | MS.gene24199:intron | 30.0% |
| !!! | CCACGTATAATGTTCTTTTT+TGG | - | chr1.2:1482358-1482377 | MS.gene24199:intron | 30.0% |
| !!! | CGTATAATGTTCTTTTTTGG+AGG | - | chr1.2:1482361-1482380 | MS.gene24199:intron | 30.0% |
| !!! | GGTTTTTGAGAAGTGTTATT+TGG | - | chr1.2:1483732-1483751 | MS.gene24199:intron | 30.0% |
| !!! | TTTTTTTAGCGCTATTCAAG+TGG | - | chr1.2:1483954-1483973 | MS.gene24199:intron | 30.0% |
| AAAAAGAGGACATTCTACCT+AGG | + | chr1.2:1483576-1483595 | None:intergenic | 35.0% | |
| AACACCAAATTACCTTATGG+GGG | + | chr1.2:1482555-1482574 | None:intergenic | 35.0% | |
| AATGTTGTGTTGTGTTATGG+AGG | - | chr1.2:1483710-1483729 | MS.gene24199:intron | 35.0% | |
| AGAAGCTGCTCAATAAATTG+AGG | - | chr1.2:1484563-1484582 | MS.gene24199:CDS | 35.0% | |
| AGACTCATGGTTGTCAAAAT+CGG | - | chr1.2:1483770-1483789 | MS.gene24199:intron | 35.0% | |
| ATACCCAAACGATCTTTAGT+GGG | + | chr1.2:1483799-1483818 | None:intergenic | 35.0% | |
| ATATGACAAGATCAAGAGGA+TGG | - | chr1.2:1484193-1484212 | MS.gene24199:intron | 35.0% | |
| ATCCTCTTGATCTTGTCATA+TGG | + | chr1.2:1484194-1484213 | None:intergenic | 35.0% | |
| ATGTTGTGTTGTGTTATGGA+GGG | - | chr1.2:1483711-1483730 | MS.gene24199:intron | 35.0% | |
| ATTAGGTAGAATGTATTGGG+AGG | - | chr1.2:1482709-1482728 | MS.gene24199:intron | 35.0% | |
| GAAGCTGCTCAATAAATTGA+GGG | - | chr1.2:1484564-1484583 | MS.gene24199:CDS | 35.0% | |
| TATACCCAAACGATCTTTAG+TGG | + | chr1.2:1483800-1483819 | None:intergenic | 35.0% | |
| TCATGGTCCTATTCACTTTA+GGG | - | chr1.2:1481420-1481439 | MS.gene24199:intron | 35.0% | |
| TGTGAAGAAATTTGTGCTTC+AGG | - | chr1.2:1481331-1481350 | MS.gene24199:intron | 35.0% | |
| TTAGGTAGAATGTATTGGGA+GGG | - | chr1.2:1482710-1482729 | MS.gene24199:intron | 35.0% | |
| TTCAAAAACCCTCCAAAAAG+AGG | + | chr1.2:1483590-1483609 | None:intergenic | 35.0% | |
| ! | AGTGATTAATTAAGGGTGCA+TGG | - | chr1.2:1482391-1482410 | MS.gene24199:intron | 35.0% |
| ! | ATGTAGCTGTTGAGTGTTTT+TGG | - | chr1.2:1481902-1481921 | MS.gene24199:intron | 35.0% |
| ! | CTGTTTTCATTAGCTACTCT+TGG | + | chr1.2:1482150-1482169 | None:intergenic | 35.0% |
| ! | TAGAATGTCCTCTTTTTGGA+GGG | - | chr1.2:1483579-1483598 | MS.gene24199:intron | 35.0% |
| ! | TAGGTAGAATGTCCTCTTTT+TGG | - | chr1.2:1483575-1483594 | MS.gene24199:intron | 35.0% |
| !! | TAGAATGCTTTCTTTTGGGA+GGG | - | chr1.2:1482868-1482887 | MS.gene24199:intron | 35.0% |
| !! | TTGACGAGTGTTGTTTGATT+AGG | - | chr1.2:1482692-1482711 | MS.gene24199:intron | 35.0% |
| !! | TTTGGTGTTTGTAATTGGCT+TGG | - | chr1.2:1481802-1481821 | MS.gene24199:intron | 35.0% |
| AACACTTCTCAAAAACCCTC+CGG | + | chr1.2:1482504-1482523 | None:intergenic | 40.0% | |
| AAGTGAATAGGACCATGAGA+AGG | + | chr1.2:1481418-1481437 | None:intergenic | 40.0% | |
| AATGTTGTGTTATGTTCCGG+AGG | - | chr1.2:1482485-1482504 | MS.gene24199:intron | 40.0% | |
| ATGATACCCACAGATGCTAT+AGG | - | chr1.2:1482307-1482326 | MS.gene24199:intron | 40.0% | |
| ATGTTGTGTTATGTTCCGGA+GGG | - | chr1.2:1482486-1482505 | MS.gene24199:intron | 40.0% | |
| CACAAGATCTAGACAACACA+AGG | + | chr1.2:1483066-1483085 | None:intergenic | 40.0% | |
| CTCATGGTCCTATTCACTTT+AGG | - | chr1.2:1481419-1481438 | MS.gene24199:intron | 40.0% | |
| CTCCATATGACAAGATCAAG+AGG | - | chr1.2:1484189-1484208 | MS.gene24199:intron | 40.0% | |
| CTCTTGATCTTGTCATATGG+AGG | + | chr1.2:1484191-1484210 | None:intergenic | 40.0% | |
| GAAGAAATTTGTGCTTCAGG+TGG | - | chr1.2:1481334-1481353 | MS.gene24199:intron | 40.0% | |
| GACTCATGGTTGTCAAAATC+GGG | - | chr1.2:1483771-1483790 | MS.gene24199:intron | 40.0% | |
| GATCCCACTAAAGATCGTTT+GGG | - | chr1.2:1483793-1483812 | MS.gene24199:intron | 40.0% | |
| GATTCCCCCATAAGGTAATT+TGG | - | chr1.2:1482548-1482567 | MS.gene24199:intron | 40.0% | |
| TTGATCTTGTCATATGGAGG+AGG | + | chr1.2:1484188-1484207 | None:intergenic | 40.0% | |
| ! | GGTTTCTTGTTTATAGGAGC+TGG | - | chr1.2:1484498-1484517 | MS.gene24199:CDS | 40.0% |
| ! | GTAGAATGCTGTCTTTTGGA+GGG | - | chr1.2:1483900-1483919 | MS.gene24199:intron | 40.0% |
| ! | GTAGAATGCTTTCTTTTGGG+AGG | - | chr1.2:1482867-1482886 | MS.gene24199:intron | 40.0% |
| ! | GTAGAATGTCCTCTTTTTGG+AGG | - | chr1.2:1483578-1483597 | MS.gene24199:intron | 40.0% |
| ! | TGGTTCTTACTTGAGAGCAT+CGG | + | chr1.2:1484225-1484244 | None:intergenic | 40.0% |
| ! | TGTAGAATGCTGTCTTTTGG+AGG | - | chr1.2:1483899-1483918 | MS.gene24199:intron | 40.0% |
| ! | TGTTGTTAAGTGTTGCGTGA+TGG | - | chr1.2:1484056-1484075 | MS.gene24199:intron | 40.0% |
| ! | TTCTTGTTTATAGGAGCTGG+AGG | - | chr1.2:1484501-1484520 | MS.gene24199:CDS | 40.0% |
| !! | AGGGTGTTGAGACTTCAAAA+GGG | - | chr1.2:1484332-1484351 | MS.gene24199:intron | 40.0% |
| !! | GTAATTGGCTTGGTGATGTT+TGG | - | chr1.2:1483123-1483142 | MS.gene24199:intron | 40.0% |
| !! | TAGGGTGTTGAGACTTCAAA+AGG | - | chr1.2:1484331-1484350 | MS.gene24199:intron | 40.0% |
| !! | TCATTACTGATTCCCCCATA+AGG | - | chr1.2:1482540-1482559 | MS.gene24199:intron | 40.0% |
| !! | TTGCTGTTGAGTGTTTTGCA+AGG | - | chr1.2:1483230-1483249 | MS.gene24199:intron | 40.0% |
| !!! | AGCTGTTGAGTGTTTTTGGA+GGG | - | chr1.2:1481906-1481925 | MS.gene24199:intron | 40.0% |
| !!! | GGTTTGCCAAAAGTGTTTTG+TGG | - | chr1.2:1482889-1482908 | MS.gene24199:intron | 40.0% |
| !!! | TAGCTGTTGAGTGTTTTTGG+AGG | - | chr1.2:1481905-1481924 | MS.gene24199:intron | 40.0% |
| AGTGCGCCAAAAGATCTTAG+AGG | + | chr1.2:1481449-1481468 | None:intergenic | 45.0% | |
| AGTTGTCATCAGAGGTTGGA+TGG | - | chr1.2:1484378-1484397 | MS.gene24199:intron | 45.0% | |
| ATACCACACAAGACTAAGCG+TGG | - | chr1.2:1484122-1484141 | MS.gene24199:intron | 45.0% | |
| GGACACAAATACTGCTTGCT+CGG | - | chr1.2:1484353-1484372 | MS.gene24199:intron | 45.0% | |
| GGATCCCACTAAAGATCGTT+TGG | - | chr1.2:1483792-1483811 | MS.gene24199:intron | 45.0% | |
| GTGCGCCAAAAGATCTTAGA+GGG | + | chr1.2:1481448-1481467 | None:intergenic | 45.0% | |
| TATAGGAGCTGGAGGATAAG+AGG | - | chr1.2:1484509-1484528 | MS.gene24199:CDS | 45.0% | |
| TCAGAGGTTGGATGGAACTA+CGG | - | chr1.2:1484386-1484405 | MS.gene24199:CDS | 45.0% | |
| TTGCGACCTATAGCATCTGT+GGG | + | chr1.2:1482316-1482335 | None:intergenic | 45.0% | |
| TTTGCGACCTATAGCATCTG+TGG | + | chr1.2:1482317-1482336 | None:intergenic | 45.0% | |
| !! | GGTTCTTACTTGAGAGCATC+GGG | + | chr1.2:1484224-1484243 | None:intergenic | 45.0% |
| ACACAAGACTAAGCGTGGAG+AGG | - | chr1.2:1484127-1484146 | MS.gene24199:intron | 50.0% | |
| GAACTACGGTGGCATCATCA+AGG | - | chr1.2:1484400-1484419 | MS.gene24199:CDS | 50.0% | |
| GAGGGAGCCCTAAAGTGAAT+AGG | + | chr1.2:1481430-1481449 | None:intergenic | 50.0% | |
| GATAAGAGGAAGGAACGCGT+AGG | - | chr1.2:1484523-1484542 | MS.gene24199:CDS | 50.0% | |
| GCGCGATTGAAGGTCTATGA+GGG | - | chr1.2:1484158-1484177 | MS.gene24199:intron | 50.0% | |
| GGACAGTTGTCATCAGAGGT+TGG | - | chr1.2:1484374-1484393 | MS.gene24199:intron | 50.0% | |
| TCTTGCCTCCATTGTCGCAA+AGG | - | chr1.2:1481273-1481292 | MS.gene24199:CDS | 50.0% | |
| TTGCGACAATGGAGGCAAGA+CGG | + | chr1.2:1481273-1481292 | None:intergenic | 50.0% | |
| ! | ATCTTTTGGCGCACTGTTCG+TGG | - | chr1.2:1481454-1481473 | MS.gene24199:CDS | 50.0% |
| ! | GGGAGCAAGGACTTCAAGTT+GGG | + | chr1.2:1484626-1484645 | None:intergenic | 50.0% |
| ! | TCTTTTGGCGCACTGTTCGT+GGG | - | chr1.2:1481455-1481474 | MS.gene24199:CDS | 50.0% |
| !! | AGCAAGGACTTCAAGTTGGG+GGG | + | chr1.2:1484623-1484642 | None:intergenic | 50.0% |
| !! | GAGCAAGGACTTCAAGTTGG+GGG | + | chr1.2:1484624-1484643 | None:intergenic | 50.0% |
| !! | GGAGCAAGGACTTCAAGTTG+GGG | + | chr1.2:1484625-1484644 | None:intergenic | 50.0% |
| !! | TCTCCACGCTTAGTCTTGTG+TGG | + | chr1.2:1484128-1484147 | None:intergenic | 50.0% |
| !!! | GGGCTCCCTCTAAGATCTTT+TGG | - | chr1.2:1481440-1481459 | MS.gene24199:intron | 50.0% |
| CAGCTCCTTTGCGACAATGG+AGG | + | chr1.2:1481281-1481300 | None:intergenic | 55.0% | |
| CGCGCGATTGAAGGTCTATG+AGG | - | chr1.2:1484157-1484176 | MS.gene24199:intron | 55.0% | |
| CGGGAGCAAGGACTTCAAGT+TGG | + | chr1.2:1484627-1484646 | None:intergenic | 55.0% | |
| CTTAGCGCAGATGCCTGATC+CGG | + | chr1.2:1481215-1481234 | None:intergenic | 55.0% | |
| GAGCAGCTCCTTTGCGACAA+TGG | + | chr1.2:1481284-1481303 | None:intergenic | 55.0% | |
| GAGGAAGGAACGCGTAGGTT+TGG | - | chr1.2:1484528-1484547 | MS.gene24199:CDS | 55.0% | |
| GAGGTTGGATGGAACTACGG+TGG | - | chr1.2:1484389-1484408 | MS.gene24199:CDS | 55.0% | |
| GCTCGGACAGTTGTCATCAG+AGG | - | chr1.2:1484370-1484389 | MS.gene24199:intron | 55.0% | |
| GCTGCTCAATGGTCAGAAGG+TGG | - | chr1.2:1481297-1481316 | MS.gene24199:CDS | 55.0% | |
| GGAGCTGCTCAATGGTCAGA+AGG | - | chr1.2:1481294-1481313 | MS.gene24199:CDS | 55.0% | |
| GGAGCTGGAGGATAAGAGGA+AGG | - | chr1.2:1484513-1484532 | MS.gene24199:CDS | 55.0% | |
| GTCGCAAAGGAGCTGCTCAA+TGG | - | chr1.2:1481286-1481305 | MS.gene24199:CDS | 55.0% | |
| AGGCAAGACGGCCGAGCATG+TGG | + | chr1.2:1481261-1481280 | None:intergenic | 65.0% | |
| CAAGACGGCCGAGCATGTGG+TGG | + | chr1.2:1481258-1481277 | None:intergenic | 65.0% | |
| GGCTGCACTCGCGCGATTGA+AGG | - | chr1.2:1484148-1484167 | MS.gene24199:intron | 65.0% | |
| ACGGCCGAGCATGTGGTGGC+GGG | + | chr1.2:1481254-1481273 | None:intergenic | 70.0% | |
| GACGCCCGCCACCACATGCT+CGG | - | chr1.2:1481247-1481266 | MS.gene24199:CDS | 70.0% | |
| GACGGCCGAGCATGTGGTGG+CGG | + | chr1.2:1481255-1481274 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 1481205 | 1484657 | 1481205 | ID=MS.gene24199 |
| chr1.2 | mRNA | 1481205 | 1484657 | 1481205 | ID=MS.gene24199.t1;Parent=MS.gene24199 |
| chr1.2 | exon | 1484386 | 1484657 | 1484386 | ID=MS.gene24199.t1.exon1;Parent=MS.gene24199.t1 |
| chr1.2 | CDS | 1484386 | 1484657 | 1484386 | ID=cds.MS.gene24199.t1;Parent=MS.gene24199.t1 |
| chr1.2 | exon | 1481628 | 1481744 | 1481628 | ID=MS.gene24199.t1.exon2;Parent=MS.gene24199.t1 |
| chr1.2 | CDS | 1481628 | 1481744 | 1481628 | ID=cds.MS.gene24199.t1;Parent=MS.gene24199.t1 |
| chr1.2 | exon | 1481441 | 1481528 | 1481441 | ID=MS.gene24199.t1.exon3;Parent=MS.gene24199.t1 |
| chr1.2 | CDS | 1481441 | 1481528 | 1481441 | ID=cds.MS.gene24199.t1;Parent=MS.gene24199.t1 |
| chr1.2 | exon | 1481205 | 1481348 | 1481205 | ID=MS.gene24199.t1.exon4;Parent=MS.gene24199.t1 |
| chr1.2 | CDS | 1481205 | 1481348 | 1481205 | ID=cds.MS.gene24199.t1;Parent=MS.gene24199.t1 |
| Gene Sequence |
| Protein sequence |
