Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94182.t1 | XP_003616742.1 | 100 | 206 | 0 | 0 | 1 | 206 | 1 | 206 | 2.80E-110 | 407.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94182.t1 | Q9FKC0 | 85.0 | 206 | 31 | 0 | 1 | 206 | 1 | 206 | 2.9e-100 | 365.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94182.t1 | G7K7C0 | 100.0 | 206 | 0 | 0 | 1 | 206 | 1 | 206 | 2.0e-110 | 407.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050252 | MS.gene94182 | 0.809136 | 2.20E-50 | -1.69E-46 |
| MS.gene056399 | MS.gene94182 | 0.822656 | 2.11E-53 | -1.69E-46 |
| MS.gene057052 | MS.gene94182 | 0.807081 | 6.02E-50 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94182.t1 | MTR_5g083790 | 100.000 | 206 | 0 | 0 | 1 | 206 | 1 | 206 | 4.23e-152 | 420 |
| MS.gene94182.t1 | MTR_1g023590 | 91.262 | 206 | 18 | 0 | 1 | 206 | 1 | 206 | 4.04e-138 | 384 |
| MS.gene94182.t1 | MTR_7g057770 | 90.291 | 206 | 20 | 0 | 1 | 206 | 1 | 206 | 1.74e-137 | 383 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94182.t1 | AT4G13170 | 85.922 | 206 | 29 | 0 | 1 | 206 | 1 | 206 | 4.54e-135 | 377 |
| MS.gene94182.t1 | AT5G48760 | 84.951 | 206 | 31 | 0 | 1 | 206 | 1 | 206 | 8.02e-135 | 376 |
| MS.gene94182.t1 | AT5G48760 | 84.951 | 206 | 31 | 0 | 1 | 206 | 1 | 206 | 8.02e-135 | 376 |
| MS.gene94182.t1 | AT3G07110 | 84.951 | 206 | 31 | 0 | 1 | 206 | 1 | 206 | 7.04e-134 | 374 |
| MS.gene94182.t1 | AT3G24830 | 83.981 | 206 | 33 | 0 | 1 | 206 | 1 | 206 | 2.23e-132 | 370 |
| MS.gene94182.t1 | AT3G07110 | 84.541 | 207 | 31 | 1 | 1 | 206 | 1 | 207 | 2.84e-132 | 370 |
Find 48 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGCAGATCAATAAATTA+AGG | 0.231717 | 5.4:-66325906 | MS.gene94182:CDS |
| TGAAGTACATGAGGTTTCTT+AGG | 0.283670 | 5.4:-66328088 | MS.gene94182:CDS |
| GAAGGAGCTCTAAAATGAAT+AGG | 0.395745 | 5.4:+66328035 | None:intergenic |
| AATAGGACCATGACTGGGTT+TGG | 0.418442 | 5.4:+66328052 | None:intergenic |
| ATCCTCTTAATCTTGTCATA+TGG | 0.423761 | 5.4:+66326402 | None:intergenic |
| GAGAAAGGAAAGATCACAAT+TGG | 0.426472 | 5.4:-66325941 | MS.gene94182:CDS |
| CTCCATATGACAAGATTAAG+AGG | 0.429099 | 5.4:-66326404 | MS.gene94182:CDS |
| TAGGGTATTGAGGCTTCAAA+AGG | 0.430477 | 5.4:-66326148 | MS.gene94182:CDS |
| GTTCTCCAGAAAATCTTTGA+AGG | 0.432053 | 5.4:+66328017 | None:intergenic |
| GAAGCAGATCAATAAATTAA+GGG | 0.462554 | 5.4:-66325905 | MS.gene94182:CDS |
| GAACTACTATGATATCATAA+AGG | 0.465509 | 5.4:-66326079 | MS.gene94182:intron |
| GATTTGCATGTCCGGTGGAC+TGG | 0.467358 | 5.4:-66328123 | MS.gene94182:CDS |
| TAAATGAATTTAGGGTATTG+AGG | 0.470143 | 5.4:-66326158 | MS.gene94182:intron |
| AGCTGCTCTTGCTAGGTTGA+AGG | 0.470276 | 5.4:-66326445 | MS.gene94182:CDS |
| CGAACTTACTTGAGAGCATC+AGG | 0.475120 | 5.4:+66326372 | None:intergenic |
| AAAATTGTGGACGAGAAGCT+TGG | 0.483493 | 5.4:-66325871 | MS.gene94182:CDS |
| AAATTGTGGACGAGAAGCTT+GGG | 0.489613 | 5.4:-66325870 | MS.gene94182:CDS |
| TCTCCACGCTTTGTCTTGTG+TGG | 0.491410 | 5.4:+66326468 | None:intergenic |
| ACATGAGGTTTCTTAGGAAG+AGG | 0.494032 | 5.4:-66328082 | MS.gene94182:CDS |
| GCATGTCCGGTGGACTGGTT+AGG | 0.502693 | 5.4:-66328118 | MS.gene94182:CDS |
| GGAATTGGAAAATAAGAGAA+AGG | 0.504497 | 5.4:-66325956 | MS.gene94182:CDS |
| AATTGTCAGCTGAGGTTGGA+TGG | 0.505889 | 5.4:-66326101 | MS.gene94182:CDS |
| AGGAGCAAGTACTTGTAGTT+CGG | 0.510535 | 5.4:+66325846 | None:intergenic |
| GGACACAAATTCTGTCTGCT+TGG | 0.514702 | 5.4:-66326126 | MS.gene94182:CDS |
| AAAATGAATAGGACCATGAC+TGG | 0.522732 | 5.4:+66328046 | None:intergenic |
| GTGGAGAAGCTGCTCTTGCT+AGG | 0.536980 | 5.4:-66326452 | MS.gene94182:CDS |
| TGTGAAGAGATTTGCATGTC+CGG | 0.549696 | 5.4:-66328131 | MS.gene94182:CDS |
| GACTCTCTTTGCACATGCGC+CGG | 0.550515 | 5.4:+66328244 | None:intergenic |
| AAGCCTATTCAGTACTTGAC+AGG | 0.553701 | 5.4:+66325826 | None:intergenic |
| TTAATCTTGTCATATGGAGG+TGG | 0.558115 | 5.4:+66326408 | None:intergenic |
| GGACAATTGTCAGCTGAGGT+TGG | 0.562938 | 5.4:-66326105 | MS.gene94182:CDS |
| GCTTGGACAATTGTCAGCTG+AGG | 0.569812 | 5.4:-66326109 | MS.gene94182:CDS |
| CTCTTAATCTTGTCATATGG+AGG | 0.571934 | 5.4:+66326405 | None:intergenic |
| GCTAGGTTGAAGGTCTATGA+AGG | 0.574592 | 5.4:-66326435 | MS.gene94182:CDS |
| AGGGTATTGAGGCTTCAAAA+GGG | 0.594183 | 5.4:-66326147 | MS.gene94182:CDS |
| GGCAGAAAATGAAGTACATG+AGG | 0.595104 | 5.4:-66328097 | MS.gene94182:CDS |
| ATATGACAAGATTAAGAGGA+TGG | 0.595460 | 5.4:-66326400 | MS.gene94182:CDS |
| TTTCTGCCTAACCAGTCCAC+CGG | 0.600425 | 5.4:+66328112 | None:intergenic |
| ATGAATACCAAACCCAGTCA+TGG | 0.611358 | 5.4:-66328059 | MS.gene94182:CDS |
| GACGCTCGCCACCACATGCT+AGG | 0.613396 | 5.4:-66328215 | MS.gene94182:CDS |
| GGTGAAAGCTGAGAAAATTG+TGG | 0.628360 | 5.4:-66325884 | MS.gene94182:CDS |
| CTCGCCACCACATGCTAGGT+CGG | 0.628652 | 5.4:-66328211 | MS.gene94182:CDS |
| ATTCCACACAAGACAAAGCG+TGG | 0.632644 | 5.4:-66326471 | MS.gene94182:CDS |
| AAATGAATAGGACCATGACT+GGG | 0.669561 | 5.4:+66328047 | None:intergenic |
| GAAGAGATTTGCATGTCCGG+TGG | 0.677614 | 5.4:-66328128 | MS.gene94182:CDS |
| ACGCTAACCGACCTAGCATG+TGG | 0.688886 | 5.4:+66328204 | None:intergenic |
| GTAGCAAAAGAGTTACTCAA+CGG | 0.692593 | 5.4:-66328176 | MS.gene94182:CDS |
| CTAACCGACCTAGCATGTGG+TGG | 0.710751 | 5.4:+66328207 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTACATAAAATATGTGT+AGG | - | chr5.4:66327831-66327850 | MS.gene94182:intron | 15.0% |
| !! | AATTACATAAAATATGTGTA+GGG | - | chr5.4:66327832-66327851 | MS.gene94182:intron | 15.0% |
| !!! | AGTTTAGTATTTTTATGATT+AGG | - | chr5.4:66327759-66327778 | MS.gene94182:intron | 15.0% |
| !!! | ATCATGAAATTATGTTTTTA+GGG | - | chr5.4:66326595-66326614 | MS.gene94182:intron | 15.0% |
| !!! | TATCATGAAATTATGTTTTT+AGG | - | chr5.4:66326594-66326613 | MS.gene94182:intron | 15.0% |
| !!! | TTTGAATTTTTGTGTTTATA+GGG | + | chr5.4:66327796-66327815 | None:intergenic | 15.0% |
| !! | ACAAAAATTCAAAGTTAATC+CGG | - | chr5.4:66327803-66327822 | MS.gene94182:intron | 20.0% |
| !! | CATAAAAGTGATATACTTAA+TGG | - | chr5.4:66326347-66326366 | MS.gene94182:intron | 20.0% |
| !! | TACTAACATAAGCATTTATA+AGG | - | chr5.4:66326677-66326696 | MS.gene94182:intron | 20.0% |
| !! | TAGAATGATACTACATAATA+AGG | - | chr5.4:66327362-66327381 | MS.gene94182:intron | 20.0% |
| !! | TATTTGTCAAAATTTGTGTT+TGG | - | chr5.4:66327339-66327358 | MS.gene94182:intron | 20.0% |
| !! | TGAATGTGTAAATGAATTTA+GGG | - | chr5.4:66327925-66327944 | MS.gene94182:intron | 20.0% |
| !!! | ATTTTATGTAATTTCATGTC+CGG | + | chr5.4:66327825-66327844 | None:intergenic | 20.0% |
| !!! | CTTTGAATTTTTGTGTTTAT+AGG | + | chr5.4:66327797-66327816 | None:intergenic | 20.0% |
| !!! | GTGTTTATATGATAGTTTTT+TGG | - | chr5.4:66326217-66326236 | MS.gene94182:intron | 20.0% |
| ! | AACACAAACATTCTTAACAT+CGG | + | chr5.4:66327508-66327527 | None:intergenic | 25.0% |
| ! | AAGCATTTATAAGGCTATTT+GGG | - | chr5.4:66326686-66326705 | MS.gene94182:intron | 25.0% |
| ! | AAGCTACTATTTAGTAGAAT+AGG | - | chr5.4:66327209-66327228 | MS.gene94182:intron | 25.0% |
| ! | ACATAATAAGGTAAAACATG+TGG | - | chr5.4:66327374-66327393 | MS.gene94182:intron | 25.0% |
| ! | AGAAGCAGATCAATAAATTA+AGG | - | chr5.4:66328185-66328204 | MS.gene94182:CDS | 25.0% |
| ! | CTAATTGAATTTGTAGTGTT+TGG | - | chr5.4:66326297-66326316 | MS.gene94182:intron | 25.0% |
| ! | CTGAATGTGTAAATGAATTT+AGG | - | chr5.4:66327924-66327943 | MS.gene94182:intron | 25.0% |
| ! | GAACTACTATGATATCATAA+AGG | - | chr5.4:66328012-66328031 | MS.gene94182:CDS | 25.0% |
| ! | GAAGCAGATCAATAAATTAA+GGG | - | chr5.4:66328186-66328205 | MS.gene94182:CDS | 25.0% |
| ! | GAAGCTTCTATTTAGTATAA+TGG | - | chr5.4:66326987-66327006 | MS.gene94182:intron | 25.0% |
| ! | TAAGCATTTATAAGGCTATT+TGG | - | chr5.4:66326685-66326704 | MS.gene94182:intron | 25.0% |
| ! | TTAAATAAGCCAATTCAAAC+AGG | + | chr5.4:66326650-66326669 | None:intergenic | 25.0% |
| !!! | GTAAATCTTTTGTTGATGAT+AGG | - | chr5.4:66328114-66328133 | MS.gene94182:CDS | 25.0% |
| !!! | TAAATGAATTTAGGGTATTG+AGG | - | chr5.4:66327933-66327952 | MS.gene94182:intron | 25.0% |
| !!! | TTTTAAGTGTTGTCAAATAG+AGG | - | chr5.4:66326761-66326780 | MS.gene94182:intron | 25.0% |
| !!! | TTTTTTGCTATTGATATCAC+TGG | - | chr5.4:66327298-66327317 | MS.gene94182:intron | 25.0% |
| AAAATAGGACCTGTTTGAAT+TGG | - | chr5.4:66326638-66326657 | MS.gene94182:intron | 30.0% | |
| ACTCTATAACATAGCTGAAT+TGG | - | chr5.4:66327048-66327067 | MS.gene94182:intron | 30.0% | |
| AGCTGGTAAAAATAAGCTAT+AGG | - | chr5.4:66326446-66326465 | MS.gene94182:CDS | 30.0% | |
| ATATGACAAGATTAAGAGGA+TGG | - | chr5.4:66327691-66327710 | MS.gene94182:intron | 30.0% | |
| ATCCTCTTAATCTTGTCATA+TGG | + | chr5.4:66327692-66327711 | None:intergenic | 30.0% | |
| GGAATTGGAAAATAAGAGAA+AGG | - | chr5.4:66328135-66328154 | MS.gene94182:CDS | 30.0% | |
| GTTCAAATTAAGCTATGCTA+CGG | + | chr5.4:66327268-66327287 | None:intergenic | 30.0% | |
| TAGAATAGGTTGTCATAAAG+AGG | - | chr5.4:66327223-66327242 | MS.gene94182:intron | 30.0% | |
| TATAAGCTAATTCCATAAGC+TGG | - | chr5.4:66326429-66326448 | MS.gene94182:CDS | 30.0% | |
| ! | TTTTATGCGATTGACAACAT+TGG | - | chr5.4:66327083-66327102 | MS.gene94182:intron | 30.0% |
| !! | TAGTATAATGGATTGTCAGA+TGG | - | chr5.4:66326999-66327018 | MS.gene94182:intron | 30.0% |
| !!! | AGCTTATTTTTACCAGCTTA+TGG | + | chr5.4:66326444-66326463 | None:intergenic | 30.0% |
| !!! | CTTTTGTTGATGATAGGAAT+TGG | - | chr5.4:66328120-66328139 | MS.gene94182:CDS | 30.0% |
| !!! | TTTTTTGGTTGCTGTAAATG+TGG | - | chr5.4:66326232-66326251 | MS.gene94182:intron | 30.0% |
| AAAATGAATAGGACCATGAC+TGG | + | chr5.4:66326048-66326067 | None:intergenic | 35.0% | |
| AAATGAATAGGACCATGACT+GGG | + | chr5.4:66326047-66326066 | None:intergenic | 35.0% | |
| ACTAAATAGTAGCTTCCACA+TGG | + | chr5.4:66327204-66327223 | None:intergenic | 35.0% | |
| ATCACCTAAGATAAACCATG+TGG | - | chr5.4:66327186-66327205 | MS.gene94182:intron | 35.0% | |
| CGTAGAGGAATTTGAACTAA+TGG | - | chr5.4:66326798-66326817 | MS.gene94182:intron | 35.0% | |
| CTCCATATGACAAGATTAAG+AGG | - | chr5.4:66327687-66327706 | MS.gene94182:intron | 35.0% | |
| CTCTTAATCTTGTCATATGG+AGG | + | chr5.4:66327689-66327708 | None:intergenic | 35.0% | |
| GAGAAAGGAAAGATCACAAT+TGG | - | chr5.4:66328150-66328169 | MS.gene94182:CDS | 35.0% | |
| GTAGCAAAAGAGTTACTCAA+CGG | - | chr5.4:66325915-66325934 | MS.gene94182:CDS | 35.0% | |
| GTGTAGGGACTAAACTTAAA+AGG | - | chr5.4:66327847-66327866 | MS.gene94182:intron | 35.0% | |
| GTTCTCCAGAAAATCTTTGA+AGG | + | chr5.4:66326077-66326096 | None:intergenic | 35.0% | |
| TACATTGCATTTGACAACAC+TGG | - | chr5.4:66327435-66327454 | MS.gene94182:intron | 35.0% | |
| TATTGTTTGCGATGCACTAT+TGG | - | chr5.4:66326822-66326841 | MS.gene94182:intron | 35.0% | |
| TGAAGTACATGAGGTTTCTT+AGG | - | chr5.4:66326003-66326022 | MS.gene94182:intron | 35.0% | |
| TGTTATAGAGTACAGAACTC+TGG | + | chr5.4:66327039-66327058 | None:intergenic | 35.0% | |
| TTAATCTTGTCATATGGAGG+TGG | + | chr5.4:66327686-66327705 | None:intergenic | 35.0% | |
| TTGACTAAAAAAGACCCGTT+TGG | + | chr5.4:66326493-66326512 | None:intergenic | 35.0% | |
| TTGTAGAATGATACCACATC+AGG | - | chr5.4:66326953-66326972 | MS.gene94182:intron | 35.0% | |
| !! | GAAGGAGCTCTAAAATGAAT+AGG | + | chr5.4:66326059-66326078 | None:intergenic | 35.0% |
| !! | TATAATGGATTGTCAGATGG+AGG | - | chr5.4:66327002-66327021 | MS.gene94182:intron | 35.0% |
| !!! | ATGTTTTTAGGGTTGTCATC+TGG | - | chr5.4:66326606-66326625 | MS.gene94182:intron | 35.0% |
| AAAATTGTGGACGAGAAGCT+TGG | - | chr5.4:66328220-66328239 | MS.gene94182:CDS | 40.0% | |
| AAATTGTGGACGAGAAGCTT+GGG | - | chr5.4:66328221-66328240 | MS.gene94182:CDS | 40.0% | |
| ACATGAGGTTTCTTAGGAAG+AGG | - | chr5.4:66326009-66326028 | MS.gene94182:intron | 40.0% | |
| AGAAAGTGACGGTTACCAAA+CGG | - | chr5.4:66326475-66326494 | MS.gene94182:CDS | 40.0% | |
| AGGAGCAAGTACTTGTAGTT+CGG | + | chr5.4:66328248-66328267 | None:intergenic | 40.0% | |
| ATAGGCTCATGAGAAAGTGA+CGG | - | chr5.4:66326464-66326483 | MS.gene94182:CDS | 40.0% | |
| ATCTGGTCGGAGTTCAAAAT+AGG | - | chr5.4:66326623-66326642 | MS.gene94182:intron | 40.0% | |
| ATGAATACCAAACCCAGTCA+TGG | - | chr5.4:66326032-66326051 | MS.gene94182:intron | 40.0% | |
| CAAATGCAGCTACACTACTA+TGG | + | chr5.4:66326859-66326878 | None:intergenic | 40.0% | |
| CTGATGCTCTCAAGTAAGTT+CGG | - | chr5.4:66327720-66327739 | MS.gene94182:intron | 40.0% | |
| GAGAATGTTTGTGACAACAC+TGG | - | chr5.4:66327110-66327129 | MS.gene94182:intron | 40.0% | |
| GATACAGCACTATATCGTAG+AGG | - | chr5.4:66326783-66326802 | MS.gene94182:intron | 40.0% | |
| GCTTCCACATGGTTTATCTT+AGG | + | chr5.4:66327193-66327212 | None:intergenic | 40.0% | |
| GGCAGAAAATGAAGTACATG+AGG | - | chr5.4:66325994-66326013 | MS.gene94182:intron | 40.0% | |
| GGTGAAAGCTGAGAAAATTG+TGG | - | chr5.4:66328207-66328226 | MS.gene94182:CDS | 40.0% | |
| TCTACATGCTTTACCTGATG+TGG | + | chr5.4:66326969-66326988 | None:intergenic | 40.0% | |
| TGTGAAGAGATTTGCATGTC+CGG | - | chr5.4:66325960-66325979 | MS.gene94182:intron | 40.0% | |
| ! | ATTTTTGCATTTGACGACGC+TGG | - | chr5.4:66327538-66327557 | MS.gene94182:intron | 40.0% |
| ! | GAGCTCCTTCAAAGATTTTC+TGG | - | chr5.4:66326069-66326088 | MS.gene94182:intron | 40.0% |
| !! | AGGGTATTGAGGCTTCAAAA+GGG | - | chr5.4:66327944-66327963 | MS.gene94182:intron | 40.0% |
| !! | ATTTTCTGGAGAACTCTTCG+TGG | - | chr5.4:66326083-66326102 | MS.gene94182:CDS | 40.0% |
| !! | TAGGGTATTGAGGCTTCAAA+AGG | - | chr5.4:66327943-66327962 | MS.gene94182:intron | 40.0% |
| !! | TTTTCTGGAGAACTCTTCGT+GGG | - | chr5.4:66326084-66326103 | MS.gene94182:CDS | 40.0% |
| !!! | TTTTAGGGTTGTCATCTGGT+CGG | - | chr5.4:66326610-66326629 | MS.gene94182:intron | 40.0% |
| AATAGGACCATGACTGGGTT+TGG | + | chr5.4:66326042-66326061 | None:intergenic | 45.0% | |
| AATTGTCAGCTGAGGTTGGA+TGG | - | chr5.4:66327990-66328009 | MS.gene94182:intron | 45.0% | |
| ATTCCACACAAGACAAAGCG+TGG | - | chr5.4:66327620-66327639 | MS.gene94182:intron | 45.0% | |
| GAAAGTGACGGTTACCAAAC+GGG | - | chr5.4:66326476-66326495 | MS.gene94182:CDS | 45.0% | |
| GGACACAAATTCTGTCTGCT+TGG | - | chr5.4:66327965-66327984 | MS.gene94182:intron | 45.0% | |
| GGTTGCTGTAAATGTGGTTG+TGG | - | chr5.4:66326238-66326257 | MS.gene94182:intron | 45.0% | |
| TAAGCTATGCTACGGAGCTA+TGG | + | chr5.4:66327260-66327279 | None:intergenic | 45.0% | |
| ! | GCTAGGTTGAAGGTCTATGA+AGG | - | chr5.4:66327656-66327675 | MS.gene94182:intron | 45.0% |
| !! | CGAACTTACTTGAGAGCATC+AGG | + | chr5.4:66327722-66327741 | None:intergenic | 45.0% |
| !!! | AAATTGTTTTTTTTTTTTTT+TGG | - | chr5.4:66327586-66327605 | MS.gene94182:intron | 5.0% |
| GAAGAGATTTGCATGTCCGG+TGG | - | chr5.4:66325963-66325982 | MS.gene94182:intron | 50.0% | |
| GCTTGGACAATTGTCAGCTG+AGG | - | chr5.4:66327982-66328001 | MS.gene94182:intron | 50.0% | |
| GGACAATTGTCAGCTGAGGT+TGG | - | chr5.4:66327986-66328005 | MS.gene94182:intron | 50.0% | |
| TCTCCACGCTTTGTCTTGTG+TGG | + | chr5.4:66327626-66327645 | None:intergenic | 50.0% | |
| TTTCTGCCTAACCAGTCCAC+CGG | + | chr5.4:66325982-66326001 | None:intergenic | 50.0% | |
| ! | AGCTGCTCTTGCTAGGTTGA+AGG | - | chr5.4:66327646-66327665 | MS.gene94182:intron | 50.0% |
| ACGCTAACCGACCTAGCATG+TGG | + | chr5.4:66325890-66325909 | None:intergenic | 55.0% | |
| CTAACCGACCTAGCATGTGG+TGG | + | chr5.4:66325887-66325906 | None:intergenic | 55.0% | |
| GACTCTCTTTGCACATGCGC+CGG | + | chr5.4:66325850-66325869 | None:intergenic | 55.0% | |
| GATTTGCATGTCCGGTGGAC+TGG | - | chr5.4:66325968-66325987 | MS.gene94182:intron | 55.0% | |
| GTGGAGAAGCTGCTCTTGCT+AGG | - | chr5.4:66327639-66327658 | MS.gene94182:intron | 55.0% | |
| CTCGCCACCACATGCTAGGT+CGG | - | chr5.4:66325880-66325899 | MS.gene94182:CDS | 60.0% | |
| !! | GCATGTCCGGTGGACTGGTT+AGG | - | chr5.4:66325973-66325992 | MS.gene94182:intron | 60.0% |
| GACGCTCGCCACCACATGCT+AGG | - | chr5.4:66325876-66325895 | MS.gene94182:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 66325834 | 66328279 | 66325834 | ID=MS.gene94182 |
| chr5.4 | mRNA | 66325834 | 66328279 | 66325834 | ID=MS.gene94182.t1;Parent=MS.gene94182 |
| chr5.4 | exon | 66328008 | 66328279 | 66328008 | ID=MS.gene94182.t1.exon1;Parent=MS.gene94182.t1 |
| chr5.4 | CDS | 66328008 | 66328279 | 66328008 | ID=cds.MS.gene94182.t1;Parent=MS.gene94182.t1 |
| chr5.4 | exon | 66326381 | 66326497 | 66326381 | ID=MS.gene94182.t1.exon2;Parent=MS.gene94182.t1 |
| chr5.4 | CDS | 66326381 | 66326497 | 66326381 | ID=cds.MS.gene94182.t1;Parent=MS.gene94182.t1 |
| chr5.4 | exon | 66326080 | 66326167 | 66326080 | ID=MS.gene94182.t1.exon3;Parent=MS.gene94182.t1 |
| chr5.4 | CDS | 66326080 | 66326167 | 66326080 | ID=cds.MS.gene94182.t1;Parent=MS.gene94182.t1 |
| chr5.4 | exon | 66325834 | 66325977 | 66325834 | ID=MS.gene94182.t1.exon4;Parent=MS.gene94182.t1 |
| chr5.4 | CDS | 66325834 | 66325977 | 66325834 | ID=cds.MS.gene94182.t1;Parent=MS.gene94182.t1 |
| Gene Sequence |
| Protein sequence |
