Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29720.t1 | XP_003616742.1 | 100 | 206 | 0 | 0 | 1 | 206 | 1 | 206 | 2.80E-110 | 407.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29720.t1 | Q9FKC0 | 85.0 | 206 | 31 | 0 | 1 | 206 | 1 | 206 | 2.9e-100 | 365.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29720.t1 | G7K7C0 | 100.0 | 206 | 0 | 0 | 1 | 206 | 1 | 206 | 2.0e-110 | 407.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29720.t1 | MTR_5g083790 | 100.000 | 206 | 0 | 0 | 1 | 206 | 1 | 206 | 4.23e-152 | 420 |
| MS.gene29720.t1 | MTR_1g023590 | 91.262 | 206 | 18 | 0 | 1 | 206 | 1 | 206 | 4.04e-138 | 384 |
| MS.gene29720.t1 | MTR_7g057770 | 90.291 | 206 | 20 | 0 | 1 | 206 | 1 | 206 | 1.74e-137 | 383 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29720.t1 | AT4G13170 | 85.922 | 206 | 29 | 0 | 1 | 206 | 1 | 206 | 4.54e-135 | 377 |
| MS.gene29720.t1 | AT5G48760 | 84.951 | 206 | 31 | 0 | 1 | 206 | 1 | 206 | 8.02e-135 | 376 |
| MS.gene29720.t1 | AT5G48760 | 84.951 | 206 | 31 | 0 | 1 | 206 | 1 | 206 | 8.02e-135 | 376 |
| MS.gene29720.t1 | AT3G07110 | 84.951 | 206 | 31 | 0 | 1 | 206 | 1 | 206 | 7.04e-134 | 374 |
| MS.gene29720.t1 | AT3G24830 | 83.981 | 206 | 33 | 0 | 1 | 206 | 1 | 206 | 2.23e-132 | 370 |
| MS.gene29720.t1 | AT3G07110 | 84.541 | 207 | 31 | 1 | 1 | 206 | 1 | 207 | 2.84e-132 | 370 |
Find 47 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGCAGATCAATAAATTA+AGG | 0.231717 | 5.3:-67904978 | MS.gene29720:CDS |
| TGAAGTACATGAGGTTTCTT+AGG | 0.283670 | 5.3:-67907200 | MS.gene29720:CDS |
| GAAGGAGCTCTAAAATGAAT+AGG | 0.395745 | 5.3:+67907147 | None:intergenic |
| ATCCTCTTAATCTTGTCATA+TGG | 0.423761 | 5.3:+67905475 | None:intergenic |
| GAGAAAGGAAAGATCACAAT+TGG | 0.426472 | 5.3:-67905013 | MS.gene29720:CDS |
| CTCCATATGACAAGATTAAG+AGG | 0.429099 | 5.3:-67905477 | MS.gene29720:CDS |
| TAGGGTATTGAGGCTTCAAA+AGG | 0.430477 | 5.3:-67905221 | MS.gene29720:CDS |
| GTTCTCCAGAAAATCTTTGA+AGG | 0.432053 | 5.3:+67907129 | None:intergenic |
| AATAGGACCATGACTCGGTT+TGG | 0.455482 | 5.3:+67907164 | None:intergenic |
| TGAACTTACTTGAGAGCATC+AGG | 0.458956 | 5.3:+67905445 | None:intergenic |
| GAAGCAGATCAATAAATTAA+GGG | 0.462554 | 5.3:-67904977 | MS.gene29720:CDS |
| GAACTACTATGATATCATAA+AGG | 0.465509 | 5.3:-67905152 | MS.gene29720:intron |
| TAAATGAATTTAGGGTATTG+AGG | 0.470143 | 5.3:-67905231 | MS.gene29720:intron |
| AGCTGCTCTTGCTAGGTTGA+AGG | 0.470276 | 5.3:-67905518 | MS.gene29720:CDS |
| AAAATTGTGGACGAGAAGCT+TGG | 0.483493 | 5.3:-67904943 | MS.gene29720:CDS |
| AAATTGTGGACGAGAAGCTT+GGG | 0.489613 | 5.3:-67904942 | MS.gene29720:CDS |
| TCTCCACGCTTTGTCTTGTG+TGG | 0.491410 | 5.3:+67905541 | None:intergenic |
| ACATGAGGTTTCTTAGGAAG+AGG | 0.494032 | 5.3:-67907194 | MS.gene29720:CDS |
| GGAATTGGAAAATAAGAGAA+AGG | 0.504497 | 5.3:-67905028 | MS.gene29720:CDS |
| AATTGTCAGCTGAGGTTGGA+TGG | 0.505889 | 5.3:-67905174 | MS.gene29720:CDS |
| AGGAGCAAGTACTTGTAGTT+CGG | 0.510535 | 5.3:+67904918 | None:intergenic |
| GGACACAAATTCTGTCTGCT+TGG | 0.514702 | 5.3:-67905199 | MS.gene29720:CDS |
| GCATGTCCGGTGGACTCGTT+AGG | 0.527034 | 5.3:-67907230 | MS.gene29720:CDS |
| GTGGAGAAGCTGCTCTTGCT+AGG | 0.536980 | 5.3:-67905525 | MS.gene29720:CDS |
| GATCAATAAATTAAGGGTGA+AGG | 0.537511 | 5.3:-67904971 | MS.gene29720:CDS |
| TGTGAAGAGATTTGCATGTC+CGG | 0.549696 | 5.3:-67907243 | MS.gene29720:CDS |
| GACTCTCTTTGCACATGCGC+CGG | 0.550515 | 5.3:+67907356 | None:intergenic |
| AAGCCTATTCAGTACTTGAC+AGG | 0.553701 | 5.3:+67904898 | None:intergenic |
| TTAATCTTGTCATATGGAGG+TGG | 0.558115 | 5.3:+67905481 | None:intergenic |
| GGACAATTGTCAGCTGAGGT+TGG | 0.562938 | 5.3:-67905178 | MS.gene29720:CDS |
| GCTTGGACAATTGTCAGCTG+AGG | 0.569812 | 5.3:-67905182 | MS.gene29720:CDS |
| CTCTTAATCTTGTCATATGG+AGG | 0.571934 | 5.3:+67905478 | None:intergenic |
| GCTAGGTTGAAGGTCTATGA+AGG | 0.574592 | 5.3:-67905508 | MS.gene29720:CDS |
| AGGGTATTGAGGCTTCAAAA+GGG | 0.594183 | 5.3:-67905220 | MS.gene29720:CDS |
| GGCAGAAAATGAAGTACATG+AGG | 0.595104 | 5.3:-67907209 | MS.gene29720:CDS |
| ATATGACAAGATTAAGAGGA+TGG | 0.595460 | 5.3:-67905473 | MS.gene29720:CDS |
| ATGAATACCAAACCGAGTCA+TGG | 0.611358 | 5.3:-67907171 | MS.gene29720:CDS |
| GACGCTCGCCACCACATGCT+AGG | 0.613396 | 5.3:-67907327 | MS.gene29720:CDS |
| TTTCTGCCTAACGAGTCCAC+CGG | 0.626200 | 5.3:+67907224 | None:intergenic |
| GGTGAAGGCTGAGAAAATTG+TGG | 0.628360 | 5.3:-67904956 | MS.gene29720:CDS |
| CTCGCCACCACATGCTAGGT+CGG | 0.628652 | 5.3:-67907323 | MS.gene29720:CDS |
| ATTCCACACAAGACAAAGCG+TGG | 0.632644 | 5.3:-67905544 | MS.gene29720:CDS |
| GAAGAGATTTGCATGTCCGG+TGG | 0.677614 | 5.3:-67907240 | MS.gene29720:CDS |
| ACGCTAACCGACCTAGCATG+TGG | 0.681605 | 5.3:+67907316 | None:intergenic |
| AAATGAATAGGACCATGACT+CGG | 0.684902 | 5.3:+67907159 | None:intergenic |
| GTAGCAAAAGAGTTACTCAA+CGG | 0.709986 | 5.3:-67907288 | MS.gene29720:CDS |
| CTAACCGACCTAGCATGTGG+TGG | 0.710751 | 5.3:+67907319 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTACATAAAATATGTGT+AGG | - | chr5.3:67906942-67906961 | MS.gene29720:intron | 15.0% |
| !! | AATTACATAAAATATGTGTA+GGG | - | chr5.3:67906943-67906962 | MS.gene29720:intron | 15.0% |
| !!! | ATTTTTTCAATTGAGATTAT+GGG | - | chr5.3:67905462-67905481 | MS.gene29720:CDS | 15.0% |
| !!! | TTTGAATTTTTGTGTTTATA+GGG | + | chr5.3:67906907-67906926 | None:intergenic | 15.0% |
| !! | ATAAATATGAAATGACATCA+AGG | - | chr5.3:67905417-67905436 | MS.gene29720:intron | 20.0% |
| !! | TAGAATGATACAACATAATA+AGG | - | chr5.3:67906470-67906489 | MS.gene29720:intron | 20.0% |
| !! | TATTTGTCAAAATTTGTGTT+TGG | - | chr5.3:67906447-67906466 | MS.gene29720:intron | 20.0% |
| !! | TGAATGTGTAAATGAATTTA+GGG | - | chr5.3:67907036-67907055 | MS.gene29720:intron | 20.0% |
| !! | TTAAATAAGCTAATTCAAAC+AGG | + | chr5.3:67905755-67905774 | None:intergenic | 20.0% |
| !!! | AGTTTAGTATTTTTATGGTT+AGG | - | chr5.3:67906870-67906889 | MS.gene29720:intron | 20.0% |
| !!! | ATCTCAGTTTAGTATTTTTA+TGG | - | chr5.3:67906865-67906884 | MS.gene29720:intron | 20.0% |
| !!! | ATTGTGAAACTATGTTTTTA+GGG | - | chr5.3:67905700-67905719 | MS.gene29720:intron | 20.0% |
| !!! | CTTTGAATTTTTGTGTTTAT+AGG | + | chr5.3:67906908-67906927 | None:intergenic | 20.0% |
| !!! | GATTTTTTCAATTGAGATTA+TGG | - | chr5.3:67905461-67905480 | MS.gene29720:CDS | 20.0% |
| !!! | TATTGTGAAACTATGTTTTT+AGG | - | chr5.3:67905699-67905718 | MS.gene29720:intron | 20.0% |
| !!! | TTTGAACTAACTTTTATACT+TGG | - | chr5.3:67906527-67906546 | MS.gene29720:intron | 20.0% |
| !!! | TTTTTTCAATTGAGATTATG+GGG | - | chr5.3:67905463-67905482 | MS.gene29720:CDS | 20.0% |
| !!! | TTTTTTGCTATTAATATCAC+TGG | - | chr5.3:67906408-67906427 | MS.gene29720:intron | 20.0% |
| ! | AACACAAACATTCTTAACAT+CGG | + | chr5.3:67906616-67906635 | None:intergenic | 25.0% |
| ! | AAGCTACTATTTAGTAGAAT+AGG | - | chr5.3:67906319-67906338 | MS.gene29720:intron | 25.0% |
| ! | ACATAATAAGGTAAAACATG+TGG | - | chr5.3:67906482-67906501 | MS.gene29720:intron | 25.0% |
| ! | ACTCTATAACATAACTGAAT+TGG | - | chr5.3:67906158-67906177 | MS.gene29720:intron | 25.0% |
| ! | AGAAGCAGATCAATAAATTA+AGG | - | chr5.3:67907297-67907316 | MS.gene29720:CDS | 25.0% |
| ! | CAAAAATTCAAAGTTAATCC+AGG | - | chr5.3:67906915-67906934 | MS.gene29720:intron | 25.0% |
| ! | CTGAATGTGTAAATGAATTT+AGG | - | chr5.3:67907035-67907054 | MS.gene29720:intron | 25.0% |
| ! | GAACTACTATGATATCATAA+AGG | - | chr5.3:67907123-67907142 | MS.gene29720:CDS | 25.0% |
| ! | GAAGCAGATCAATAAATTAA+GGG | - | chr5.3:67907298-67907317 | MS.gene29720:CDS | 25.0% |
| ! | GAAGCTTCTATTTAGTATAA+TGG | - | chr5.3:67906097-67906116 | MS.gene29720:intron | 25.0% |
| ! | GTGTTTATATGATAGTTGTT+TGG | - | chr5.3:67905289-67905308 | MS.gene29720:intron | 25.0% |
| ! | TACTAACATAAGCATTTGTA+AGG | - | chr5.3:67905782-67905801 | MS.gene29720:intron | 25.0% |
| !! | ATTTTATGTAATTTCATGCC+TGG | + | chr5.3:67906936-67906955 | None:intergenic | 25.0% |
| !! | TTTTATGCAATTGACAACAT+TGG | - | chr5.3:67906193-67906212 | MS.gene29720:intron | 25.0% |
| !!! | GTAAATCTTTTGTTGATGAT+AGG | - | chr5.3:67907226-67907245 | MS.gene29720:CDS | 25.0% |
| !!! | TAAATGAATTTAGGGTATTG+AGG | - | chr5.3:67907044-67907063 | MS.gene29720:intron | 25.0% |
| !!! | TTTTAAGTGTTGTCAAATAG+AGG | - | chr5.3:67905866-67905885 | MS.gene29720:intron | 25.0% |
| AAGCATTTGTAAGGCTATTT+GGG | - | chr5.3:67905791-67905810 | MS.gene29720:intron | 30.0% | |
| ATATGACAAGATTAAGAGGA+TGG | - | chr5.3:67906802-67906821 | MS.gene29720:intron | 30.0% | |
| ATCCTCTTAATCTTGTCATA+TGG | + | chr5.3:67906803-67906822 | None:intergenic | 30.0% | |
| GATCAATAAATTAAGGGTGA+AGG | - | chr5.3:67907304-67907323 | MS.gene29720:CDS | 30.0% | |
| GGAATTGGAAAATAAGAGAA+AGG | - | chr5.3:67907247-67907266 | MS.gene29720:CDS | 30.0% | |
| GTTCAAATTAAGCTATGCTA+CGG | + | chr5.3:67906378-67906397 | None:intergenic | 30.0% | |
| TAAGCATTTGTAAGGCTATT+TGG | - | chr5.3:67905790-67905809 | MS.gene29720:intron | 30.0% | |
| TAGAATAGGTTGTCATAAAG+AGG | - | chr5.3:67906333-67906352 | MS.gene29720:intron | 30.0% | |
| TATTGTTTGTGATGCACTAT+TGG | - | chr5.3:67905927-67905946 | MS.gene29720:intron | 30.0% | |
| TCCATAAGCTAGTAAAAACA+AGG | - | chr5.3:67905545-67905564 | MS.gene29720:CDS | 30.0% | |
| TTGTTTGGTTGCTGAAAATA+TGG | - | chr5.3:67905304-67905323 | MS.gene29720:intron | 30.0% | |
| !! | TAGTATAATGGATTGTCAGA+TGG | - | chr5.3:67906109-67906128 | MS.gene29720:intron | 30.0% |
| !!! | ACCTTGTTTTTACTAGCTTA+TGG | + | chr5.3:67905549-67905568 | None:intergenic | 30.0% |
| !!! | CTTTTGTTGATGATAGGAAT+TGG | - | chr5.3:67907232-67907251 | MS.gene29720:CDS | 30.0% |
| AAATGAATAGGACCATGACT+CGG | + | chr5.3:67905119-67905138 | None:intergenic | 35.0% | |
| ACTAAATAGTAGCTTCCACA+TGG | + | chr5.3:67906314-67906333 | None:intergenic | 35.0% | |
| AGAAAGTGACGGTTACAAAA+CGG | - | chr5.3:67905580-67905599 | MS.gene29720:intron | 35.0% | |
| ATAAGCTCATGAGAAAGTGA+CGG | - | chr5.3:67905569-67905588 | MS.gene29720:intron | 35.0% | |
| ATCACCTAAGATAAACCATG+TGG | - | chr5.3:67906296-67906315 | MS.gene29720:intron | 35.0% | |
| CGTAGAGGAATTTGAACTAA+TGG | - | chr5.3:67905903-67905922 | MS.gene29720:intron | 35.0% | |
| CTAAGTGAAGTTGTAGTGTT+TGG | - | chr5.3:67905369-67905388 | MS.gene29720:intron | 35.0% | |
| CTCCATATGACAAGATTAAG+AGG | - | chr5.3:67906798-67906817 | MS.gene29720:intron | 35.0% | |
| CTCTTAATCTTGTCATATGG+AGG | + | chr5.3:67906800-67906819 | None:intergenic | 35.0% | |
| GAGAAAGGAAAGATCACAAT+TGG | - | chr5.3:67907262-67907281 | MS.gene29720:CDS | 35.0% | |
| GTAGCAAAAGAGTTACTCAA+CGG | - | chr5.3:67904987-67905006 | MS.gene29720:CDS | 35.0% | |
| GTGTAGGGACTAAACTTAAA+AGG | - | chr5.3:67906958-67906977 | MS.gene29720:intron | 35.0% | |
| GTTCTCCAGAAAATCTTTGA+AGG | + | chr5.3:67905149-67905168 | None:intergenic | 35.0% | |
| TGAAGTACATGAGGTTTCTT+AGG | - | chr5.3:67905075-67905094 | MS.gene29720:intron | 35.0% | |
| TGTTATAGAGTACAGAACTC+TGG | + | chr5.3:67906149-67906168 | None:intergenic | 35.0% | |
| TTAATCTTGTCATATGGAGG+TGG | + | chr5.3:67906797-67906816 | None:intergenic | 35.0% | |
| TTGTAGAATGATACCACATC+AGG | - | chr5.3:67906063-67906082 | MS.gene29720:intron | 35.0% | |
| !! | GAAGGAGCTCTAAAATGAAT+AGG | + | chr5.3:67905131-67905150 | None:intergenic | 35.0% |
| !! | TATAATGGATTGTCAGATGG+AGG | - | chr5.3:67906112-67906131 | MS.gene29720:intron | 35.0% |
| !!! | ATGTTTTTAGGGTTGTCATC+TGG | - | chr5.3:67905711-67905730 | MS.gene29720:intron | 35.0% |
| AAAATTGTGGACGAGAAGCT+TGG | - | chr5.3:67907332-67907351 | MS.gene29720:CDS | 40.0% | |
| AAATTGTGGACGAGAAGCTT+GGG | - | chr5.3:67907333-67907352 | MS.gene29720:CDS | 40.0% | |
| ACATGAGGTTTCTTAGGAAG+AGG | - | chr5.3:67905081-67905100 | MS.gene29720:intron | 40.0% | |
| AGGAGCAAGTACTTGTAGTT+CGG | + | chr5.3:67907360-67907379 | None:intergenic | 40.0% | |
| ATCTGGTCGGAGTTCAAAAT+AGG | - | chr5.3:67905728-67905747 | MS.gene29720:intron | 40.0% | |
| ATGAATACCAAACCGAGTCA+TGG | - | chr5.3:67905104-67905123 | MS.gene29720:intron | 40.0% | |
| CAAATGCAGCTACACTACTA+TGG | + | chr5.3:67905964-67905983 | None:intergenic | 40.0% | |
| GAAAGTGACGGTTACAAAAC+GGG | - | chr5.3:67905581-67905600 | MS.gene29720:intron | 40.0% | |
| GAGAATGTTTGTGACAACAC+TGG | - | chr5.3:67906220-67906239 | MS.gene29720:intron | 40.0% | |
| GATACAGCACTATATCGTAG+AGG | - | chr5.3:67905888-67905907 | MS.gene29720:intron | 40.0% | |
| GCTTCCACATGGTTTATCTT+AGG | + | chr5.3:67906303-67906322 | None:intergenic | 40.0% | |
| GGCAGAAAATGAAGTACATG+AGG | - | chr5.3:67905066-67905085 | MS.gene29720:intron | 40.0% | |
| GGTTGCTGAAAATATGGCTA+TGG | - | chr5.3:67905310-67905329 | MS.gene29720:intron | 40.0% | |
| TACTTGGCATTTGACAACAC+TGG | - | chr5.3:67906543-67906562 | MS.gene29720:intron | 40.0% | |
| TCTACATGCTTTACCTGATG+TGG | + | chr5.3:67906079-67906098 | None:intergenic | 40.0% | |
| TGTGAAGAGATTTGCATGTC+CGG | - | chr5.3:67905032-67905051 | MS.gene29720:intron | 40.0% | |
| ! | ATTTTTGCATTTGACGACGC+TGG | - | chr5.3:67906646-67906665 | MS.gene29720:intron | 40.0% |
| ! | GAGCTCCTTCAAAGATTTTC+TGG | - | chr5.3:67905141-67905160 | MS.gene29720:intron | 40.0% |
| !! | AGGGTATTGAGGCTTCAAAA+GGG | - | chr5.3:67907055-67907074 | MS.gene29720:intron | 40.0% |
| !! | ATTTTCTGGAGAACTCTTCG+TGG | - | chr5.3:67905155-67905174 | MS.gene29720:CDS | 40.0% |
| !! | TAGGGTATTGAGGCTTCAAA+AGG | - | chr5.3:67907054-67907073 | MS.gene29720:intron | 40.0% |
| !! | TGAACTTACTTGAGAGCATC+AGG | + | chr5.3:67906833-67906852 | None:intergenic | 40.0% |
| !! | TTTTCTGGAGAACTCTTCGT+GGG | - | chr5.3:67905156-67905175 | MS.gene29720:CDS | 40.0% |
| !!! | TTTTAGGGTTGTCATCTGGT+CGG | - | chr5.3:67905715-67905734 | MS.gene29720:intron | 40.0% |
| AATTGTCAGCTGAGGTTGGA+TGG | - | chr5.3:67907101-67907120 | MS.gene29720:intron | 45.0% | |
| ATTCCACACAAGACAAAGCG+TGG | - | chr5.3:67906731-67906750 | MS.gene29720:intron | 45.0% | |
| GGACACAAATTCTGTCTGCT+TGG | - | chr5.3:67907076-67907095 | MS.gene29720:intron | 45.0% | |
| GGTGAAGGCTGAGAAAATTG+TGG | - | chr5.3:67907319-67907338 | MS.gene29720:CDS | 45.0% | |
| TAAGCTATGCTACGGAGCTA+TGG | + | chr5.3:67906370-67906389 | None:intergenic | 45.0% | |
| ! | GCTAGGTTGAAGGTCTATGA+AGG | - | chr5.3:67906767-67906786 | MS.gene29720:intron | 45.0% |
| !! | AATAGGACCATGACTCGGTT+TGG | + | chr5.3:67905114-67905133 | None:intergenic | 45.0% |
| !!! | AATTGTTTTTTTTTTTTTTT+TGG | - | chr5.3:67906697-67906716 | MS.gene29720:intron | 5.0% |
| GAAGAGATTTGCATGTCCGG+TGG | - | chr5.3:67905035-67905054 | MS.gene29720:intron | 50.0% | |
| GCTTGGACAATTGTCAGCTG+AGG | - | chr5.3:67907093-67907112 | MS.gene29720:intron | 50.0% | |
| GGACAATTGTCAGCTGAGGT+TGG | - | chr5.3:67907097-67907116 | MS.gene29720:intron | 50.0% | |
| TCTCCACGCTTTGTCTTGTG+TGG | + | chr5.3:67906737-67906756 | None:intergenic | 50.0% | |
| TTTCTGCCTAACGAGTCCAC+CGG | + | chr5.3:67905054-67905073 | None:intergenic | 50.0% | |
| ! | AGCTGCTCTTGCTAGGTTGA+AGG | - | chr5.3:67906757-67906776 | MS.gene29720:intron | 50.0% |
| ACGCTAACCGACCTAGCATG+TGG | + | chr5.3:67904962-67904981 | None:intergenic | 55.0% | |
| CTAACCGACCTAGCATGTGG+TGG | + | chr5.3:67904959-67904978 | None:intergenic | 55.0% | |
| GACTCTCTTTGCACATGCGC+CGG | + | chr5.3:67904922-67904941 | None:intergenic | 55.0% | |
| GTGGAGAAGCTGCTCTTGCT+AGG | - | chr5.3:67906750-67906769 | MS.gene29720:intron | 55.0% | |
| CTCGCCACCACATGCTAGGT+CGG | - | chr5.3:67904952-67904971 | MS.gene29720:CDS | 60.0% | |
| ! | GCATGTCCGGTGGACTCGTT+AGG | - | chr5.3:67905045-67905064 | MS.gene29720:intron | 60.0% |
| GACGCTCGCCACCACATGCT+AGG | - | chr5.3:67904948-67904967 | MS.gene29720:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 67904906 | 67907391 | 67904906 | ID=MS.gene29720 |
| chr5.3 | mRNA | 67904906 | 67907391 | 67904906 | ID=MS.gene29720.t1;Parent=MS.gene29720 |
| chr5.3 | exon | 67907120 | 67907391 | 67907120 | ID=MS.gene29720.t1.exon1;Parent=MS.gene29720.t1 |
| chr5.3 | CDS | 67907120 | 67907391 | 67907120 | ID=cds.MS.gene29720.t1;Parent=MS.gene29720.t1 |
| chr5.3 | exon | 67905454 | 67905570 | 67905454 | ID=MS.gene29720.t1.exon2;Parent=MS.gene29720.t1 |
| chr5.3 | CDS | 67905454 | 67905570 | 67905454 | ID=cds.MS.gene29720.t1;Parent=MS.gene29720.t1 |
| chr5.3 | exon | 67905153 | 67905240 | 67905153 | ID=MS.gene29720.t1.exon3;Parent=MS.gene29720.t1 |
| chr5.3 | CDS | 67905153 | 67905240 | 67905153 | ID=cds.MS.gene29720.t1;Parent=MS.gene29720.t1 |
| chr5.3 | exon | 67904906 | 67905049 | 67904906 | ID=MS.gene29720.t1.exon4;Parent=MS.gene29720.t1 |
| chr5.3 | CDS | 67904906 | 67905049 | 67904906 | ID=cds.MS.gene29720.t1;Parent=MS.gene29720.t1 |
| Gene Sequence |
| Protein sequence |
