Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98888.t1 | XP_003616742.1 | 100 | 206 | 0 | 0 | 1 | 206 | 1 | 206 | 2.80E-110 | 407.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98888.t1 | Q9FKC0 | 85.0 | 206 | 31 | 0 | 1 | 206 | 1 | 206 | 2.9e-100 | 365.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98888.t1 | G7K7C0 | 100.0 | 206 | 0 | 0 | 1 | 206 | 1 | 206 | 2.0e-110 | 407.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98888.t1 | MTR_5g083790 | 100.000 | 206 | 0 | 0 | 1 | 206 | 1 | 206 | 4.23e-152 | 420 |
| MS.gene98888.t1 | MTR_1g023590 | 91.262 | 206 | 18 | 0 | 1 | 206 | 1 | 206 | 4.04e-138 | 384 |
| MS.gene98888.t1 | MTR_7g057770 | 90.291 | 206 | 20 | 0 | 1 | 206 | 1 | 206 | 1.74e-137 | 383 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98888.t1 | AT4G13170 | 85.922 | 206 | 29 | 0 | 1 | 206 | 1 | 206 | 4.54e-135 | 377 |
| MS.gene98888.t1 | AT5G48760 | 84.951 | 206 | 31 | 0 | 1 | 206 | 1 | 206 | 8.02e-135 | 376 |
| MS.gene98888.t1 | AT5G48760 | 84.951 | 206 | 31 | 0 | 1 | 206 | 1 | 206 | 8.02e-135 | 376 |
| MS.gene98888.t1 | AT3G07110 | 84.951 | 206 | 31 | 0 | 1 | 206 | 1 | 206 | 7.04e-134 | 374 |
| MS.gene98888.t1 | AT3G24830 | 83.981 | 206 | 33 | 0 | 1 | 206 | 1 | 206 | 2.23e-132 | 370 |
| MS.gene98888.t1 | AT3G07110 | 84.541 | 207 | 31 | 1 | 1 | 206 | 1 | 207 | 2.84e-132 | 370 |
Find 48 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGCAGATCAATAAATTA+AGG | 0.231717 | 5.2:-71697477 | MS.gene98888:CDS |
| TGAAGTACATGAGGTTTCTT+AGG | 0.283670 | 5.2:-71700123 | MS.gene98888:CDS |
| AATAGGACCATGACTGGGTT+TGG | 0.418442 | 5.2:+71700087 | None:intergenic |
| ATCCTCTTAATCTTGTCATA+TGG | 0.423761 | 5.2:+71697974 | None:intergenic |
| GAGAAAGGAAAGATCACAAT+TGG | 0.426472 | 5.2:-71697512 | MS.gene98888:CDS |
| CTCCATATGACAAGATTAAG+AGG | 0.429099 | 5.2:-71697976 | MS.gene98888:CDS |
| TAGGGTATTGAGGCTTCAAA+AGG | 0.430477 | 5.2:-71697722 | MS.gene98888:CDS |
| AGCTGCTCTTGCTAGGTTGA+AGG | 0.444479 | 5.2:-71698017 | MS.gene98888:CDS |
| GAGGGAGCTCTAAAATGAAT+AGG | 0.445189 | 5.2:+71700070 | None:intergenic |
| TGAACTTACTTGAGAGCATC+AGG | 0.458956 | 5.2:+71697944 | None:intergenic |
| GAAGCAGATCAATAAATTAA+GGG | 0.462554 | 5.2:-71697476 | MS.gene98888:CDS |
| TCCCCACGCTTTGTCTTGTG+TGG | 0.465149 | 5.2:+71698040 | None:intergenic |
| GAACTACTATGATATCATAA+AGG | 0.465509 | 5.2:-71697653 | MS.gene98888:intron |
| TAAATGAATTTAGGGTATTG+AGG | 0.470143 | 5.2:-71697732 | MS.gene98888:intron |
| AAAATTGTGGACGAGAAGCT+TGG | 0.483493 | 5.2:-71697442 | MS.gene98888:CDS |
| AAATTGTGGACGAGAAGCTT+GGG | 0.489613 | 5.2:-71697441 | MS.gene98888:CDS |
| ACATGAGGTTTCTTAGGAAG+AGG | 0.494032 | 5.2:-71700117 | MS.gene98888:CDS |
| GGAATTGGAAAATAAGAGAA+AGG | 0.504497 | 5.2:-71697527 | MS.gene98888:CDS |
| AATTGTCAGCTGAGGTTGGA+TGG | 0.505889 | 5.2:-71697675 | MS.gene98888:CDS |
| AGGAGCAAGTACTTGTAGTT+CGG | 0.510535 | 5.2:+71697417 | None:intergenic |
| GGACACAAATTCTGTCTGCT+TGG | 0.514702 | 5.2:-71697700 | MS.gene98888:CDS |
| GTGGGGAAGCTGCTCTTGCT+AGG | 0.520053 | 5.2:-71698024 | MS.gene98888:CDS |
| AAAATGAATAGGACCATGAC+TGG | 0.522732 | 5.2:+71700081 | None:intergenic |
| GCATGTCCGGTGGACTCGTT+AGG | 0.527034 | 5.2:-71700153 | MS.gene98888:CDS |
| TGTGAAGAGATTTGCATGTC+CGG | 0.549696 | 5.2:-71700166 | MS.gene98888:CDS |
| GACTCTCTTTGCACATGCGC+CGG | 0.550515 | 5.2:+71700279 | None:intergenic |
| AAGCCTATTCAGTACTTGAC+AGG | 0.553701 | 5.2:+71697397 | None:intergenic |
| TTAATCTTGTCATATGGAGG+TGG | 0.558115 | 5.2:+71697980 | None:intergenic |
| GGACAATTGTCAGCTGAGGT+TGG | 0.562938 | 5.2:-71697679 | MS.gene98888:CDS |
| GCTTGGACAATTGTCAGCTG+AGG | 0.569812 | 5.2:-71697683 | MS.gene98888:CDS |
| CTCTTAATCTTGTCATATGG+AGG | 0.571934 | 5.2:+71697977 | None:intergenic |
| GCTAGGTTGAAGGTCTATGA+AGG | 0.574592 | 5.2:-71698007 | MS.gene98888:CDS |
| AGGGTATTGAGGCTTCAAAA+GGG | 0.594183 | 5.2:-71697721 | MS.gene98888:CDS |
| GGCAGAAAATGAAGTACATG+AGG | 0.595104 | 5.2:-71700132 | MS.gene98888:CDS |
| ATATGACAAGATTAAGAGGA+TGG | 0.595460 | 5.2:-71697972 | MS.gene98888:CDS |
| ATTCCACACAAGACAAAGCG+TGG | 0.602272 | 5.2:-71698043 | MS.gene98888:CDS |
| ATGAATACCAAACCCAGTCA+TGG | 0.611358 | 5.2:-71700094 | MS.gene98888:CDS |
| GACGCTCGCCACCACATGCT+AGG | 0.613396 | 5.2:-71700250 | MS.gene98888:CDS |
| TTTCTGCCTAACGAGTCCAC+CGG | 0.626200 | 5.2:+71700147 | None:intergenic |
| GGTGAAAGCTGAGAAAATTG+TGG | 0.628360 | 5.2:-71697455 | MS.gene98888:CDS |
| CTCGCCACCACATGCTAGGT+CGG | 0.628652 | 5.2:-71700246 | MS.gene98888:CDS |
| TTCCACACAAGACAAAGCGT+GGG | 0.635807 | 5.2:-71698042 | MS.gene98888:CDS |
| AAATGAATAGGACCATGACT+GGG | 0.669561 | 5.2:+71700082 | None:intergenic |
| GAAGAGATTTGCATGTCCGG+TGG | 0.677614 | 5.2:-71700163 | MS.gene98888:CDS |
| ACGCTAACCGACCTAGCATG+TGG | 0.681605 | 5.2:+71700239 | None:intergenic |
| TCCACACAAGACAAAGCGTG+GGG | 0.707575 | 5.2:-71698041 | MS.gene98888:CDS |
| GTAGCAAAAGAGTTACTCAA+CGG | 0.709986 | 5.2:-71700211 | MS.gene98888:CDS |
| CTAACCGACCTAGCATGTGG+TGG | 0.710751 | 5.2:+71700242 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTACATAAAATATGTAT+AGG | - | chr5.2:71699865-71699884 | MS.gene98888:intron | 10.0% |
| !! | AATTACATAAAATATGTATA+GGG | - | chr5.2:71699866-71699885 | MS.gene98888:intron | 10.0% |
| !!! | ATTATGAAATTATGTTTTTA+GGG | - | chr5.2:71698186-71698205 | MS.gene98888:intron | 10.0% |
| !!! | AGTATAAAATTGTGTTTTTT+AGG | - | chr5.2:71698996-71699015 | MS.gene98888:intron | 15.0% |
| !!! | ATCTAAGTTTAGTATTTTTA+TGG | - | chr5.2:71699788-71699807 | MS.gene98888:intron | 15.0% |
| !!! | GATTATGAAATTATGTTTTT+AGG | - | chr5.2:71698185-71698204 | MS.gene98888:intron | 15.0% |
| !!! | GTATAAAATTGTGTTTTTTA+GGG | - | chr5.2:71698997-71699016 | MS.gene98888:intron | 15.0% |
| !!! | TTAAAATCAATTTTCTCAAT+CGG | + | chr5.2:71698811-71698830 | None:intergenic | 15.0% |
| !!! | TTATGAAATTATGTTTTTAG+GGG | - | chr5.2:71698187-71698206 | MS.gene98888:intron | 15.0% |
| !!! | TTTGAATTTTTGTGTTTATA+GGG | + | chr5.2:71699830-71699849 | None:intergenic | 15.0% |
| !!! | TTTTTTTCAATTCAGATTAT+GGG | - | chr5.2:71697950-71697969 | MS.gene98888:intron | 15.0% |
| !!! | TTTTTTTTCAATTCAGATTA+TGG | - | chr5.2:71697949-71697968 | MS.gene98888:intron | 15.0% |
| !! | AACTAATATAAGCATTTATG+AGG | - | chr5.2:71698375-71698394 | MS.gene98888:intron | 20.0% |
| !! | ACAAAAATTCAAAGTTAATC+CGG | - | chr5.2:71699837-71699856 | MS.gene98888:intron | 20.0% |
| !! | AGCTTATAAGTTCAAAATTA+TGG | - | chr5.2:71698105-71698124 | MS.gene98888:intron | 20.0% |
| !! | CAACACATTATACTAAAAAA+TGG | + | chr5.2:71698716-71698735 | None:intergenic | 20.0% |
| !! | TGAATGTGTAAATGAATTTA+GGG | - | chr5.2:71699957-71699976 | MS.gene98888:intron | 20.0% |
| !!! | AGTTTAGTATTTTTATGGTT+AGG | - | chr5.2:71699793-71699812 | MS.gene98888:intron | 20.0% |
| !!! | ATAACTTATTTCTATAGCAA+CGG | + | chr5.2:71698534-71698553 | None:intergenic | 20.0% |
| !!! | CTTTGAATTTTTGTGTTTAT+AGG | + | chr5.2:71699831-71699850 | None:intergenic | 20.0% |
| !!! | GATTGAGAAAATTGATTTTA+AGG | - | chr5.2:71698810-71698829 | MS.gene98888:intron | 20.0% |
| !!! | TAAAATCAATTTTCTCAATC+GGG | + | chr5.2:71698810-71698829 | None:intergenic | 20.0% |
| ! | AACTAACATAAGCATTTATG+AGG | - | chr5.2:71698268-71698287 | MS.gene98888:intron | 25.0% |
| ! | AGAAGCAGATCAATAAATTA+AGG | - | chr5.2:71700220-71700239 | MS.gene98888:CDS | 25.0% |
| ! | CAAAAATTCAAAGTTAATCC+GGG | - | chr5.2:71699838-71699857 | MS.gene98888:intron | 25.0% |
| ! | CTGAATGTGTAAATGAATTT+AGG | - | chr5.2:71699956-71699975 | MS.gene98888:intron | 25.0% |
| ! | GAACTACTATGATATCATAA+AGG | - | chr5.2:71700044-71700063 | MS.gene98888:CDS | 25.0% |
| ! | GAAGCAGATCAATAAATTAA+GGG | - | chr5.2:71700221-71700240 | MS.gene98888:CDS | 25.0% |
| ! | GAAGCTTCTATTTAGTATAA+TGG | - | chr5.2:71699335-71699354 | MS.gene98888:intron | 25.0% |
| ! | GTGTTTATATGATAGTTGTT+TGG | - | chr5.2:71697788-71697807 | MS.gene98888:intron | 25.0% |
| ! | TATAATGTGTTGTCAAATAG+AGG | - | chr5.2:71698724-71698743 | MS.gene98888:intron | 25.0% |
| ! | TTGACTAAAAAAGACATGTT+TGG | + | chr5.2:71698082-71698101 | None:intergenic | 25.0% |
| !! | AAAAAACACACATTTTCAAC+AGG | + | chr5.2:71699285-71699304 | None:intergenic | 25.0% |
| !! | ATTTTATGTAATTTCATGCC+CGG | + | chr5.2:71699859-71699878 | None:intergenic | 25.0% |
| !!! | ACTGTTTTCAAATGCTATTT+TGG | + | chr5.2:71698474-71698493 | None:intergenic | 25.0% |
| !!! | ATTTTTTGATAAGCTAATCC+AGG | + | chr5.2:71698013-71698032 | None:intergenic | 25.0% |
| !!! | GTAAATCTTTTGTTGATGAT+AGG | - | chr5.2:71700149-71700168 | MS.gene98888:CDS | 25.0% |
| !!! | TAAAATGTGTGTTTTTGACA+TGG | - | chr5.2:71698887-71698906 | MS.gene98888:intron | 25.0% |
| !!! | TAAATGAATTTAGGGTATTG+AGG | - | chr5.2:71699965-71699984 | MS.gene98888:intron | 25.0% |
| AACCGCTTATAATAACTTAC+TGG | + | chr5.2:71698597-71698616 | None:intergenic | 30.0% | |
| AAGCATTTATGAGGCTATTT+GGG | - | chr5.2:71698277-71698296 | MS.gene98888:intron | 30.0% | |
| ACCACATAAGATAATACATG+TGG | - | chr5.2:71699313-71699332 | MS.gene98888:intron | 30.0% | |
| ATATGACAAGATTAAGAGGA+TGG | - | chr5.2:71699725-71699744 | MS.gene98888:intron | 30.0% | |
| ATCCTCTTAATCTTGTCATA+TGG | + | chr5.2:71699726-71699745 | None:intergenic | 30.0% | |
| CGATACACTATTTAGTACAA+TGG | - | chr5.2:71699155-71699174 | MS.gene98888:intron | 30.0% | |
| CTAGTTGAATTTGTAGTGTT+TGG | - | chr5.2:71697868-71697887 | MS.gene98888:intron | 30.0% | |
| GGAATTGGAAAATAAGAGAA+AGG | - | chr5.2:71700170-71700189 | MS.gene98888:CDS | 30.0% | |
| GTATAGGGACTAAACTTAAA+AGG | - | chr5.2:71699881-71699900 | MS.gene98888:intron | 30.0% | |
| TAAACAGTATCGTCAAATAG+CGG | - | chr5.2:71699085-71699104 | MS.gene98888:intron | 30.0% | |
| TAAGCATTTATGAGGCTATT+TGG | - | chr5.2:71698276-71698295 | MS.gene98888:intron | 30.0% | |
| TCAAATAAGCCAATTCAAAC+AGG | + | chr5.2:71698242-71698261 | None:intergenic | 30.0% | |
| TCAACTAAACTACTATGTCA+CGG | + | chr5.2:71699202-71699221 | None:intergenic | 30.0% | |
| TCCACATGTATTATCTTATG+TGG | + | chr5.2:71699317-71699336 | None:intergenic | 30.0% | |
| TGCCAGTAAGTTATTATAAG+CGG | - | chr5.2:71698592-71698611 | MS.gene98888:intron | 30.0% | |
| TGTGGAATCATTCTACAAAA+TGG | + | chr5.2:71699642-71699661 | None:intergenic | 30.0% | |
| TTGTTTGGTTGCTGTAAATA+TGG | - | chr5.2:71697803-71697822 | MS.gene98888:intron | 30.0% | |
| ! | AAGCTGCTATTTAGTAGAAT+GGG | - | chr5.2:71699516-71699535 | MS.gene98888:intron | 30.0% |
| ! | AGTTCTCCAGAAAATTTTAG+AGG | + | chr5.2:71697649-71697668 | None:intergenic | 30.0% |
| ! | ATAAGCGGTTTTTCCAAATA+GGG | - | chr5.2:71698607-71698626 | MS.gene98888:intron | 30.0% |
| ! | GTTCTCCAGAAAATTTTAGA+GGG | + | chr5.2:71697648-71697667 | None:intergenic | 30.0% |
| ! | TATAAGCGGTTTTTCCAAAT+AGG | - | chr5.2:71698606-71698625 | MS.gene98888:intron | 30.0% |
| ! | TGTGAAAAATGTGTGTTTTG+CGG | - | chr5.2:71699464-71699483 | MS.gene98888:intron | 30.0% |
| !!! | CTTTTGTTGATGATAGGAAT+TGG | - | chr5.2:71700155-71700174 | MS.gene98888:CDS | 30.0% |
| !!! | TTTCAAATGCTATTTTGGAG+AGG | + | chr5.2:71698469-71698488 | None:intergenic | 30.0% |
| AAAATGAATAGGACCATGAC+TGG | + | chr5.2:71697619-71697638 | None:intergenic | 35.0% | |
| AAAGTAGGACCTGTTTGAAT+TGG | - | chr5.2:71698230-71698249 | MS.gene98888:intron | 35.0% | |
| AAATGAATAGGACCATGACT+GGG | + | chr5.2:71697618-71697637 | None:intergenic | 35.0% | |
| AACTGTGTCTAATGTGAAGT+AGG | - | chr5.2:71699038-71699057 | MS.gene98888:intron | 35.0% | |
| ACCTCAAATTCAGCTAACTA+TGG | + | chr5.2:71699545-71699564 | None:intergenic | 35.0% | |
| AGTAACAGTTCGTTCCAATT+TGG | + | chr5.2:71699401-71699420 | None:intergenic | 35.0% | |
| ATGATAAGCTATAAGCTACC+TGG | - | chr5.2:71697992-71698011 | MS.gene98888:CDS | 35.0% | |
| CTCCATATGACAAGATTAAG+AGG | - | chr5.2:71699721-71699740 | MS.gene98888:intron | 35.0% | |
| CTCTTAATCTTGTCATATGG+AGG | + | chr5.2:71699723-71699742 | None:intergenic | 35.0% | |
| CTGAGAGGAATTTGAACTAA+TGG | - | chr5.2:71699122-71699141 | MS.gene98888:intron | 35.0% | |
| CTGTTATAGCATAGCCAAAT+TGG | - | chr5.2:71699384-71699403 | MS.gene98888:intron | 35.0% | |
| GAGAAAGGAAAGATCACAAT+TGG | - | chr5.2:71700185-71700204 | MS.gene98888:CDS | 35.0% | |
| GCTATGCTATAACAGAACTA+TGG | + | chr5.2:71699379-71699398 | None:intergenic | 35.0% | |
| GTAGCAAAAGAGTTACTCAA+CGG | - | chr5.2:71697486-71697505 | MS.gene98888:CDS | 35.0% | |
| GTCTAATGTGAAGTAGGAAA+TGG | - | chr5.2:71699044-71699063 | MS.gene98888:intron | 35.0% | |
| TGAAGTACATGAGGTTTCTT+AGG | - | chr5.2:71697574-71697593 | MS.gene98888:intron | 35.0% | |
| TTAATCTTGTCATATGGAGG+TGG | + | chr5.2:71699720-71699739 | None:intergenic | 35.0% | |
| ! | ATAATGGTTTGTCACTCTAG+TGG | - | chr5.2:71699351-71699370 | MS.gene98888:intron | 35.0% |
| ! | GAAGCTGCTATTTAGTAGAA+TGG | - | chr5.2:71699515-71699534 | MS.gene98888:intron | 35.0% |
| !! | TGAAGCACTGTTGTCTATTA+TGG | - | chr5.2:71698639-71698658 | MS.gene98888:intron | 35.0% |
| !!! | ATATGGTCGCTTTTCAAAGT+AGG | - | chr5.2:71698215-71698234 | MS.gene98888:intron | 35.0% |
| !!! | TCCACTTGTTTTATCTCATG+CGG | + | chr5.2:71699497-71699516 | None:intergenic | 35.0% |
| !!! | TGTTTTTAGGGGTAGTCATA+TGG | - | chr5.2:71698198-71698217 | MS.gene98888:intron | 35.0% |
| AAAATTGTGGACGAGAAGCT+TGG | - | chr5.2:71700255-71700274 | MS.gene98888:CDS | 40.0% | |
| AAATTGTGGACGAGAAGCTT+GGG | - | chr5.2:71700256-71700275 | MS.gene98888:CDS | 40.0% | |
| ACAACAGTGCTTCATTGTCA+AGG | + | chr5.2:71698633-71698652 | None:intergenic | 40.0% | |
| ACATGAGGTTTCTTAGGAAG+AGG | - | chr5.2:71697580-71697599 | MS.gene98888:intron | 40.0% | |
| ACCGCATGAGATAAAACAAG+TGG | - | chr5.2:71699493-71699512 | MS.gene98888:intron | 40.0% | |
| AGGAGCAAGTACTTGTAGTT+CGG | + | chr5.2:71700283-71700302 | None:intergenic | 40.0% | |
| ATGAATACCAAACCCAGTCA+TGG | - | chr5.2:71697603-71697622 | MS.gene98888:intron | 40.0% | |
| GCCATAGTTAGCTGAATTTG+AGG | - | chr5.2:71699541-71699560 | MS.gene98888:intron | 40.0% | |
| GGCAGAAAATGAAGTACATG+AGG | - | chr5.2:71697565-71697584 | MS.gene98888:intron | 40.0% | |
| GGTGAAAGCTGAGAAAATTG+TGG | - | chr5.2:71700242-71700261 | MS.gene98888:CDS | 40.0% | |
| GGTTGCTGTAAATATGGCTA+TGG | - | chr5.2:71697809-71697828 | MS.gene98888:intron | 40.0% | |
| TGCTATAAGCGAGATTGTGA+CGG | - | chr5.2:71698053-71698072 | MS.gene98888:intron | 40.0% | |
| TGTGAAGAGATTTGCATGTC+CGG | - | chr5.2:71697531-71697550 | MS.gene98888:intron | 40.0% | |
| TTCATTGTCAAGGCCCTATT+TGG | + | chr5.2:71698623-71698642 | None:intergenic | 40.0% | |
| !! | AGGGTATTGAGGCTTCAAAA+GGG | - | chr5.2:71699976-71699995 | MS.gene98888:intron | 40.0% |
| !! | ATTTTCTGGAGAACTCTTCG+TGG | - | chr5.2:71697654-71697673 | MS.gene98888:CDS | 40.0% |
| !! | GAGGGAGCTCTAAAATGAAT+AGG | + | chr5.2:71697630-71697649 | None:intergenic | 40.0% |
| !! | TAGGGTATTGAGGCTTCAAA+AGG | - | chr5.2:71699975-71699994 | MS.gene98888:intron | 40.0% |
| !! | TGAACTTACTTGAGAGCATC+AGG | + | chr5.2:71699756-71699775 | None:intergenic | 40.0% |
| !! | TTTTCTGGAGAACTCTTCGT+GGG | - | chr5.2:71697655-71697674 | MS.gene98888:CDS | 40.0% |
| !!! | GAGCTCCCTCTAAAATTTTC+TGG | - | chr5.2:71697640-71697659 | MS.gene98888:intron | 40.0% |
| AATAGGACCATGACTGGGTT+TGG | + | chr5.2:71697613-71697632 | None:intergenic | 45.0% | |
| AATTGTCAGCTGAGGTTGGA+TGG | - | chr5.2:71700022-71700041 | MS.gene98888:intron | 45.0% | |
| ATTCCACACAAGACAAAGCG+TGG | - | chr5.2:71699654-71699673 | MS.gene98888:intron | 45.0% | |
| GGACACAAATTCTGTCTGCT+TGG | - | chr5.2:71699997-71700016 | MS.gene98888:intron | 45.0% | |
| TTCCACACAAGACAAAGCGT+GGG | - | chr5.2:71699655-71699674 | MS.gene98888:intron | 45.0% | |
| ! | AACACAAGCGTTGTCAATCG+TGG | + | chr5.2:71699426-71699445 | None:intergenic | 45.0% |
| ! | GCTAGGTTGAAGGTCTATGA+AGG | - | chr5.2:71699690-71699709 | MS.gene98888:intron | 45.0% |
| GAAGAGATTTGCATGTCCGG+TGG | - | chr5.2:71697534-71697553 | MS.gene98888:intron | 50.0% | |
| GCTTGGACAATTGTCAGCTG+AGG | - | chr5.2:71700014-71700033 | MS.gene98888:intron | 50.0% | |
| GGACAATTGTCAGCTGAGGT+TGG | - | chr5.2:71700018-71700037 | MS.gene98888:intron | 50.0% | |
| TCCACACAAGACAAAGCGTG+GGG | - | chr5.2:71699656-71699675 | MS.gene98888:intron | 50.0% | |
| TTTCTGCCTAACGAGTCCAC+CGG | + | chr5.2:71697553-71697572 | None:intergenic | 50.0% | |
| ! | AGCTGCTCTTGCTAGGTTGA+AGG | - | chr5.2:71699680-71699699 | MS.gene98888:intron | 50.0% |
| ACGCTAACCGACCTAGCATG+TGG | + | chr5.2:71697461-71697480 | None:intergenic | 55.0% | |
| CTAACCGACCTAGCATGTGG+TGG | + | chr5.2:71697458-71697477 | None:intergenic | 55.0% | |
| GACTCTCTTTGCACATGCGC+CGG | + | chr5.2:71697421-71697440 | None:intergenic | 55.0% | |
| GCTGCAACGCTGTATCTGAG+AGG | - | chr5.2:71699107-71699126 | MS.gene98888:intron | 55.0% | |
| TCCCCACGCTTTGTCTTGTG+TGG | + | chr5.2:71699660-71699679 | None:intergenic | 55.0% | |
| CTCGCCACCACATGCTAGGT+CGG | - | chr5.2:71697451-71697470 | MS.gene98888:CDS | 60.0% | |
| GTGGGGAAGCTGCTCTTGCT+AGG | - | chr5.2:71699673-71699692 | MS.gene98888:intron | 60.0% | |
| ! | GCATGTCCGGTGGACTCGTT+AGG | - | chr5.2:71697544-71697563 | MS.gene98888:intron | 60.0% |
| GACGCTCGCCACCACATGCT+AGG | - | chr5.2:71697447-71697466 | MS.gene98888:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 71697405 | 71700314 | 71697405 | ID=MS.gene98888 |
| chr5.2 | mRNA | 71697405 | 71700314 | 71697405 | ID=MS.gene98888.t1;Parent=MS.gene98888 |
| chr5.2 | exon | 71700043 | 71700314 | 71700043 | ID=MS.gene98888.t1.exon1;Parent=MS.gene98888.t1 |
| chr5.2 | CDS | 71700043 | 71700314 | 71700043 | ID=cds.MS.gene98888.t1;Parent=MS.gene98888.t1 |
| chr5.2 | exon | 71697953 | 71698069 | 71697953 | ID=MS.gene98888.t1.exon2;Parent=MS.gene98888.t1 |
| chr5.2 | CDS | 71697953 | 71698069 | 71697953 | ID=cds.MS.gene98888.t1;Parent=MS.gene98888.t1 |
| chr5.2 | exon | 71697654 | 71697741 | 71697654 | ID=MS.gene98888.t1.exon3;Parent=MS.gene98888.t1 |
| chr5.2 | CDS | 71697654 | 71697741 | 71697654 | ID=cds.MS.gene98888.t1;Parent=MS.gene98888.t1 |
| chr5.2 | exon | 71697405 | 71697548 | 71697405 | ID=MS.gene98888.t1.exon4;Parent=MS.gene98888.t1 |
| chr5.2 | CDS | 71697405 | 71697548 | 71697405 | ID=cds.MS.gene98888.t1;Parent=MS.gene98888.t1 |
| Gene Sequence |
| Protein sequence |
