Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63973.t1 | XP_003589380.1 | 100 | 206 | 0 | 0 | 1 | 206 | 1 | 206 | 9.50E-111 | 409.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63973.t1 | Q9FKC0 | 85.9 | 206 | 29 | 0 | 1 | 206 | 1 | 206 | 1.2e-98 | 360.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63973.t1 | B7FMG6 | 100.0 | 206 | 0 | 0 | 1 | 206 | 1 | 206 | 6.9e-111 | 409.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050134 | MS.gene63973 | 0.825492 | 4.55E-54 | -1.69E-46 |
| MS.gene052664 | MS.gene63973 | 0.809864 | 1.53E-50 | -1.69E-46 |
| MS.gene053224 | MS.gene63973 | 0.812513 | 4.08E-51 | -1.69E-46 |
| MS.gene054624 | MS.gene63973 | 0.80095 | 1.13E-48 | -1.69E-46 |
| MS.gene057272 | MS.gene63973 | 0.821755 | 3.41E-53 | -1.69E-46 |
| MS.gene058994 | MS.gene63973 | 0.812217 | 4.74E-51 | -1.69E-46 |
| MS.gene059340 | MS.gene63973 | 0.824691 | 7.04E-54 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63973.t1 | MTR_1g023590 | 100.000 | 206 | 0 | 0 | 1 | 206 | 1 | 206 | 1.42e-150 | 416 |
| MS.gene63973.t1 | MTR_7g057770 | 94.660 | 206 | 11 | 0 | 1 | 206 | 1 | 206 | 1.89e-143 | 398 |
| MS.gene63973.t1 | MTR_5g083790 | 91.262 | 206 | 18 | 0 | 1 | 206 | 1 | 206 | 4.04e-138 | 384 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63973.t1 | AT5G48760 | 85.922 | 206 | 29 | 0 | 1 | 206 | 1 | 206 | 1.83e-131 | 368 |
| MS.gene63973.t1 | AT5G48760 | 85.922 | 206 | 29 | 0 | 1 | 206 | 1 | 206 | 1.83e-131 | 368 |
| MS.gene63973.t1 | AT3G07110 | 84.951 | 206 | 31 | 0 | 1 | 206 | 1 | 206 | 6.32e-130 | 364 |
| MS.gene63973.t1 | AT4G13170 | 84.951 | 206 | 31 | 0 | 1 | 206 | 1 | 206 | 8.69e-130 | 363 |
| MS.gene63973.t1 | AT3G07110 | 84.541 | 207 | 31 | 1 | 1 | 206 | 1 | 207 | 2.64e-128 | 360 |
| MS.gene63973.t1 | AT3G24830 | 83.495 | 206 | 34 | 0 | 1 | 206 | 1 | 206 | 5.08e-128 | 359 |
Find 61 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGGTCCTATTCACTTTA+GGG | 0.192347 | 1.4:-1247751 | MS.gene63973:CDS |
| CTCATGGTCCTATTCACTTT+AGG | 0.198145 | 1.4:-1247752 | MS.gene63973:CDS |
| GGGCTCCCTCTAAGATCTTT+TGG | 0.279612 | 1.4:-1247731 | MS.gene63973:CDS |
| GACGGCCGAGCATGTGGTGG+CGG | 0.371739 | 1.4:+1247919 | None:intergenic |
| TGTGAAGAAATTTGTGCTTC+TGG | 0.376131 | 1.4:-1247840 | MS.gene63973:CDS |
| GGGAGCAAGGACTTCAAGTT+GGG | 0.380650 | 1.4:+1244556 | None:intergenic |
| TATAGGAGCTGGAGGATAAG+AGG | 0.397991 | 1.4:-1244670 | MS.gene63973:intron |
| TGAAGTATATGAGATTTCTA+AGG | 0.407625 | 1.4:-1247797 | MS.gene63973:CDS |
| GGCTGCACTCGCGCGATTGA+AGG | 0.416813 | 1.4:-1245031 | MS.gene63973:CDS |
| GAGGAAGGAACGCGCAGGTT+TGG | 0.417217 | 1.4:-1244651 | MS.gene63973:CDS |
| TAGGGTGTTGAGACTTCAAA+AGG | 0.434162 | 1.4:-1244848 | MS.gene63973:CDS |
| ATCCTCTTGATCTTGTCATA+TGG | 0.437541 | 1.4:+1244988 | None:intergenic |
| CGGGAGCAAGGACTTCAAGT+TGG | 0.439216 | 1.4:+1244555 | None:intergenic |
| AATAGTACTCAGTACTTAAC+GGG | 0.449959 | 1.4:+1244536 | None:intergenic |
| AAATAGTACTCAGTACTTAA+CGG | 0.452401 | 1.4:+1244535 | None:intergenic |
| GAGGGAGCCCTAAAGTGAAT+AGG | 0.470476 | 1.4:+1247744 | None:intergenic |
| GGTTCTTACTTGAGAGCATC+GGG | 0.471713 | 1.4:+1244958 | None:intergenic |
| AGAAGCTGCTCAATAAATTG+AGG | 0.480348 | 1.4:-1244616 | MS.gene63973:CDS |
| ATATGAGATTTCTAAGGAAG+AGG | 0.501956 | 1.4:-1247791 | MS.gene63973:CDS |
| CGCGCGATTGAAGGTCTATG+AGG | 0.509761 | 1.4:-1245022 | MS.gene63973:CDS |
| CTTAGCGCATATGCCTGATC+CGG | 0.515048 | 1.4:+1247959 | None:intergenic |
| GAAGCTGCTCAATAAATTGA+GGG | 0.519049 | 1.4:-1244615 | MS.gene63973:CDS |
| GACGCCCGCCACCACATGCT+CGG | 0.519214 | 1.4:-1247924 | MS.gene63973:CDS |
| ACGGCCGAGCATGTGGTGGC+GGG | 0.522437 | 1.4:+1247920 | None:intergenic |
| AGTGCGCCAAAAGATCTTAG+AGG | 0.534021 | 1.4:+1247725 | None:intergenic |
| TGGTTCTTACTTGAGAGCAT+CGG | 0.539745 | 1.4:+1244957 | None:intergenic |
| GAGAAGCTCCTTTGCGACAA+TGG | 0.544115 | 1.4:+1247890 | None:intergenic |
| TTCTTGTTTATAGGAGCTGG+AGG | 0.546787 | 1.4:-1244678 | MS.gene63973:intron |
| GGACACAAATACTGCTTGCT+CGG | 0.550212 | 1.4:-1244826 | MS.gene63973:CDS |
| ATGAATACTAAACCTTCTCA+TGG | 0.560213 | 1.4:-1247768 | MS.gene63973:CDS |
| GTCGCAAAGGAGCTTCTCAA+TGG | 0.561981 | 1.4:-1247885 | MS.gene63973:CDS |
| AGTTGTCATCAGAGGTTGGA+TGG | 0.565112 | 1.4:-1244801 | MS.gene63973:CDS |
| AGGCAAGACGGCCGAGCATG+TGG | 0.572354 | 1.4:+1247913 | None:intergenic |
| TTGATCTTGTCATATGGAGG+AGG | 0.574582 | 1.4:+1244994 | None:intergenic |
| CTCCATATGACAAGATCAAG+AGG | 0.577162 | 1.4:-1244990 | MS.gene63973:CDS |
| TCTTGCCTCCATTGTCGCAA+AGG | 0.579194 | 1.4:-1247898 | MS.gene63973:CDS |
| TCAGAGGTTGGATGGAACTA+CGG | 0.586349 | 1.4:-1244793 | MS.gene63973:CDS |
| GGAGCTGGAGGATAAGAGGA+AGG | 0.587458 | 1.4:-1244666 | MS.gene63973:CDS |
| GAACTACGGTGGCATCATCA+AGG | 0.590785 | 1.4:-1244779 | MS.gene63973:intron |
| GGACAGTTGTCATCAGAGGT+TGG | 0.592395 | 1.4:-1244805 | MS.gene63973:CDS |
| CTCTTGATCTTGTCATATGG+AGG | 0.593959 | 1.4:+1244991 | None:intergenic |
| GCTCGGACAGTTGTCATCAG+AGG | 0.597789 | 1.4:-1244809 | MS.gene63973:CDS |
| GGAGCTTCTCAATGGTCAGA+AGG | 0.600116 | 1.4:-1247877 | MS.gene63973:CDS |
| GTGCGCCAAAAGATCTTAGA+GGG | 0.602717 | 1.4:+1247726 | None:intergenic |
| CAAGACGGCCGAGCATGTGG+TGG | 0.603581 | 1.4:+1247916 | None:intergenic |
| TTGCGACAATGGAGGCAAGA+CGG | 0.613146 | 1.4:+1247901 | None:intergenic |
| AGGGTGTTGAGACTTCAAAA+GGG | 0.620018 | 1.4:-1244847 | MS.gene63973:CDS |
| GAAGAAATTTGTGCTTCTGG+TGG | 0.624159 | 1.4:-1247837 | MS.gene63973:CDS |
| GCGCGATTGAAGGTCTATGA+GGG | 0.624683 | 1.4:-1245021 | MS.gene63973:CDS |
| ATATGACAAGATCAAGAGGA+TGG | 0.634497 | 1.4:-1244986 | MS.gene63973:CDS |
| GGAGCAAGGACTTCAAGTTG+GGG | 0.640419 | 1.4:+1244557 | None:intergenic |
| TCTCCACGCTTAGTCTTGTG+TGG | 0.642845 | 1.4:+1245054 | None:intergenic |
| ATACCACACAAGACTAAGCG+TGG | 0.643021 | 1.4:-1245057 | MS.gene63973:CDS |
| AAGCTCCTTTGCGACAATGG+AGG | 0.645821 | 1.4:+1247893 | None:intergenic |
| AGCAAGGACTTCAAGTTGGG+GGG | 0.650449 | 1.4:+1244559 | None:intergenic |
| GATAAGAGGAAGGAACGCGC+AGG | 0.659068 | 1.4:-1244656 | MS.gene63973:CDS |
| GCTTCTCAATGGTCAGAAGG+TGG | 0.662927 | 1.4:-1247874 | MS.gene63973:CDS |
| ACACAAGACTAAGCGTGGAG+AGG | 0.667676 | 1.4:-1245052 | MS.gene63973:CDS |
| AAGTGAATAGGACCATGAGA+AGG | 0.669515 | 1.4:+1247756 | None:intergenic |
| GAGCAAGGACTTCAAGTTGG+GGG | 0.688692 | 1.4:+1244558 | None:intergenic |
| GAGGTTGGATGGAACTACGG+TGG | 0.706495 | 1.4:-1244790 | MS.gene63973:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTTATAAATTTATT+AGG | - | chr1.4:1246352-1246371 | MS.gene63973:intron | 0.0% |
| !!! | ATTTTTGTTTAATTTGATAT+TGG | - | chr1.4:1244880-1244899 | MS.gene63973:intron | 10.0% |
| !!! | GTTTTTTTATATGATTTATA+AGG | - | chr1.4:1246419-1246438 | MS.gene63973:intron | 10.0% |
| !!! | TTTCTTAATTAAATTTTGTT+GGG | - | chr1.4:1246260-1246279 | MS.gene63973:intron | 10.0% |
| !!! | TTTTCTTAATTAAATTTTGT+TGG | - | chr1.4:1246259-1246278 | MS.gene63973:intron | 10.0% |
| !!! | TTTTTGTTTAATTTGATATT+GGG | - | chr1.4:1244881-1244900 | MS.gene63973:intron | 10.0% |
| !!! | TTTTTTGATTATTTGATAAT+GGG | - | chr1.4:1246295-1246314 | MS.gene63973:intron | 10.0% |
| !!! | TTTTTTTGATTATTTGATAA+TGG | - | chr1.4:1246294-1246313 | MS.gene63973:intron | 10.0% |
| !! | ATATGATTTATAAGGTTATT+TGG | - | chr1.4:1246427-1246446 | MS.gene63973:intron | 15.0% |
| !! | CTGTAAATTATACAATAAAA+TGG | + | chr1.4:1247576-1247595 | None:intergenic | 15.0% |
| !! | TTTGATTATTAGATTGAATT+GGG | - | chr1.4:1245201-1245220 | MS.gene63973:intron | 15.0% |
| !!! | ATGATTTGTGATTATAAATA+TGG | - | chr1.4:1245326-1245345 | MS.gene63973:intron | 15.0% |
| !!! | TATGTTATTTCTATAACAAA+AGG | + | chr1.4:1245602-1245621 | None:intergenic | 15.0% |
| !!! | TGTATTTGTATTTGTTTTTT+AGG | - | chr1.4:1245036-1245055 | MS.gene63973:CDS | 15.0% |
| !! | AGTTAATAAGTCAATTGAAA+TGG | + | chr1.4:1245354-1245373 | None:intergenic | 20.0% |
| !! | ATAGAAAAAATGTAGATCTT+AGG | - | chr1.4:1247149-1247168 | MS.gene63973:intron | 20.0% |
| !! | ATTTGATAGAATTATGAAGT+TGG | - | chr1.4:1245770-1245789 | MS.gene63973:intron | 20.0% |
| !! | CAATTCTATCAAATAAACAA+AGG | + | chr1.4:1246115-1246134 | None:intergenic | 20.0% |
| !! | GTTTGATTATTAGATTGAAT+TGG | - | chr1.4:1245200-1245219 | MS.gene63973:intron | 20.0% |
| !! | TTTACAAGAACTTATGAAAA+TGG | - | chr1.4:1245410-1245429 | MS.gene63973:intron | 20.0% |
| !! | TTTGAAAGAACTTATGAAAA+CGG | - | chr1.4:1246704-1246723 | MS.gene63973:intron | 20.0% |
| !! | TTTGCTTATATGATTGAATT+GGG | - | chr1.4:1246520-1246539 | MS.gene63973:intron | 20.0% |
| !!! | AAAGTGTTGTTATTTTTTAG+AGG | - | chr1.4:1246150-1246169 | MS.gene63973:intron | 20.0% |
| !!! | AAGTGTTGTTATTTTTTAGA+GGG | - | chr1.4:1246151-1246170 | MS.gene63973:intron | 20.0% |
| !!! | ATGTGTTTTATAAGGTTATT+TGG | - | chr1.4:1245121-1245140 | MS.gene63973:intron | 20.0% |
| !!! | ATTATTAGCATTTTGTCTAT+GGG | - | chr1.4:1244977-1244996 | MS.gene63973:CDS | 20.0% |
| !!! | CTTTTTGTTGTTGAATTAAA+AGG | - | chr1.4:1247602-1247621 | MS.gene63973:intron | 20.0% |
| !!! | GATGTTTAATGTGTTTTATA+AGG | - | chr1.4:1245113-1245132 | MS.gene63973:intron | 20.0% |
| !!! | GTATTTGTTTTTTAGGAATT+TGG | - | chr1.4:1245043-1245062 | MS.gene63973:CDS | 20.0% |
| !!! | GTGATTTTTTTTGTTTTGTT+TGG | - | chr1.4:1247753-1247772 | MS.gene63973:CDS | 20.0% |
| !!! | GTGGTTTTGAATTTTTTAAT+TGG | - | chr1.4:1247808-1247827 | MS.gene63973:CDS | 20.0% |
| !!! | GTTTTGAAGTGATTAATTAA+GGG | - | chr1.4:1245716-1245735 | MS.gene63973:intron | 20.0% |
| !!! | TATTATTAGCATTTTGTCTA+TGG | - | chr1.4:1244976-1244995 | MS.gene63973:CDS | 20.0% |
| !!! | TTAATTGGTTTCTTGTTTAT+AGG | - | chr1.4:1247823-1247842 | MS.gene63973:CDS | 20.0% |
| !!! | TTCAAGTGGTTATTTAATTT+TGG | - | chr1.4:1247299-1247318 | MS.gene63973:intron | 20.0% |
| !!! | TTTGTATTTGTTTAGTTTGA+CGG | - | chr1.4:1245013-1245032 | MS.gene63973:CDS | 20.0% |
| !!! | TTTGTTGATTGGATTATAAT+GGG | - | chr1.4:1244850-1244869 | MS.gene63973:intron | 20.0% |
| !!! | TTTTATTGTGTTTTGTTGAT+TGG | - | chr1.4:1244839-1244858 | MS.gene63973:CDS | 20.0% |
| !!! | TTTTGTTGATTGGATTATAA+TGG | - | chr1.4:1244849-1244868 | MS.gene63973:intron | 20.0% |
| ! | AGATCTATTTATTCAGCATA+TGG | + | chr1.4:1245090-1245109 | None:intergenic | 25.0% |
| ! | ATCTGATAGAATCATAAAGT+TGG | - | chr1.4:1246992-1247011 | MS.gene63973:intron | 25.0% |
| ! | CAAAAAAGAACATTATACGT+GGG | + | chr1.4:1245692-1245711 | None:intergenic | 25.0% |
| ! | GTTTGCTTATATGATTGAAT+TGG | - | chr1.4:1246519-1246538 | MS.gene63973:intron | 25.0% |
| ! | TGAAGTATATGAGATTTCTA+AGG | - | chr1.4:1244713-1244732 | MS.gene63973:intron | 25.0% |
| ! | TGAATGAGTGAATGAAATTA+GGG | - | chr1.4:1247644-1247663 | MS.gene63973:intron | 25.0% |
| ! | TTAGCTTATTGATGTTTGAA+TGG | - | chr1.4:1245912-1245931 | MS.gene63973:intron | 25.0% |
| ! | TTGATTAGGTAGAATGTATT+GGG | - | chr1.4:1246038-1246057 | MS.gene63973:intron | 25.0% |
| ! | TTTGATTAGGTAGAATGTAT+TGG | - | chr1.4:1246037-1246056 | MS.gene63973:intron | 25.0% |
| !! | ACATAGAATGTCTTTTTCTA+TGG | - | chr1.4:1245291-1245310 | MS.gene63973:intron | 25.0% |
| !! | ATATAGAATGCTATCTTTTG+AGG | - | chr1.4:1247230-1247249 | MS.gene63973:intron | 25.0% |
| !! | ATTTAGAATGATTAGACTCA+TGG | - | chr1.4:1247089-1247108 | MS.gene63973:intron | 25.0% |
| !! | GAATTTGATCAACAATTTTG+TGG | - | chr1.4:1247789-1247808 | MS.gene63973:CDS | 25.0% |
| !! | GTTTGGACTAGATATAATTT+AGG | - | chr1.4:1246472-1246491 | MS.gene63973:intron | 25.0% |
| !! | TAAAAGTGTAGATAATAGGA+GGG | - | chr1.4:1247188-1247207 | MS.gene63973:intron | 25.0% |
| !! | TATAGAATGCTATCTTTTGA+GGG | - | chr1.4:1247231-1247250 | MS.gene63973:intron | 25.0% |
| !! | TATGTAGAATGCTTTCTTTT+GGG | - | chr1.4:1246196-1246215 | MS.gene63973:intron | 25.0% |
| !! | TTATGTAGAATGCTTTCTTT+TGG | - | chr1.4:1246195-1246214 | MS.gene63973:intron | 25.0% |
| !! | TTCGTAAAAGTGTAGATAAT+AGG | - | chr1.4:1247184-1247203 | MS.gene63973:intron | 25.0% |
| !!! | AGAAGTGTTCTTTGTTTATT+TGG | - | chr1.4:1245847-1245866 | MS.gene63973:intron | 25.0% |
| !!! | CTTATTTTCATAAACTCTCT+AGG | - | chr1.4:1246755-1246774 | MS.gene63973:intron | 25.0% |
| !!! | GAAAAGTGTTATTAGAAATG+TGG | - | chr1.4:1245995-1246014 | MS.gene63973:intron | 25.0% |
| !!! | GGTTTTGAAGTGATTAATTA+AGG | - | chr1.4:1245715-1245734 | MS.gene63973:intron | 25.0% |
| !!! | GTATAATGTTCTTTTTTGGA+GGG | - | chr1.4:1245694-1245713 | MS.gene63973:intron | 25.0% |
| !!! | TACGTTATTTCTACAACAAA+AGG | + | chr1.4:1245542-1245561 | None:intergenic | 25.0% |
| !!! | TTGGCTTTGTGATATAATTT+AGG | - | chr1.4:1245153-1245172 | MS.gene63973:intron | 25.0% |
| !!! | TTGTTTTTTAGGAATTTGGT+AGG | - | chr1.4:1245047-1245066 | MS.gene63973:CDS | 25.0% |
| AAACACCAAATTACCTTATG+GGG | + | chr1.4:1245888-1245907 | None:intergenic | 30.0% | |
| ACAAACACCAAATTACCTTA+TGG | + | chr1.4:1245890-1245909 | None:intergenic | 30.0% | |
| ATGAATACTAAACCTTCTCA+TGG | - | chr1.4:1244742-1244761 | MS.gene63973:intron | 30.0% | |
| CAAACACCAAATTACCTTAT+GGG | + | chr1.4:1245889-1245908 | None:intergenic | 30.0% | |
| CCAAAAAAGAACATTATACG+TGG | + | chr1.4:1245693-1245712 | None:intergenic | 30.0% | |
| CTGAATGAGTGAATGAAATT+AGG | - | chr1.4:1247643-1247662 | MS.gene63973:intron | 30.0% | |
| GTATAAAAAAACAGAGCAAG+TGG | + | chr1.4:1244952-1244971 | None:intergenic | 30.0% | |
| GTTGAACGTCTTTGTATATT+TGG | - | chr1.4:1247337-1247356 | MS.gene63973:intron | 30.0% | |
| TAGATCTTAGGATCATAACA+AGG | - | chr1.4:1247161-1247180 | MS.gene63973:intron | 30.0% | |
| TAGTTTATCTAAACATGCCT+AGG | - | chr1.4:1246888-1246907 | MS.gene63973:intron | 30.0% | |
| TTATGAAAATGGCTTATGAC+AGG | - | chr1.4:1245421-1245440 | MS.gene63973:intron | 30.0% | |
| TTGAAGTGATTAATGAATCC+AGG | - | chr1.4:1246937-1246956 | MS.gene63973:intron | 30.0% | |
| TTGAATGTTGTGTTATGTTC+AGG | - | chr1.4:1245814-1245833 | MS.gene63973:intron | 30.0% | |
| TTGAATGTTGTGTTGTGTTA+TGG | - | chr1.4:1247039-1247058 | MS.gene63973:intron | 30.0% | |
| TTTGTCTATGGGATTTCATT+GGG | - | chr1.4:1244988-1245007 | MS.gene63973:CDS | 30.0% | |
| ! | ACAAAACCACAAAACACTTT+TGG | + | chr1.4:1246230-1246249 | None:intergenic | 30.0% |
| ! | AGAATGTCTTTTTCTATGGA+GGG | - | chr1.4:1245295-1245314 | MS.gene63973:intron | 30.0% |
| ! | ATATGAGATTTCTAAGGAAG+AGG | - | chr1.4:1244719-1244738 | MS.gene63973:intron | 30.0% |
| ! | GTAAAAGTGTAGATAATAGG+AGG | - | chr1.4:1247187-1247206 | MS.gene63973:intron | 30.0% |
| ! | TAGAATGTCTTTTTCTATGG+AGG | - | chr1.4:1245294-1245313 | MS.gene63973:intron | 30.0% |
| ! | TTTTGTCTATGGGATTTCAT+TGG | - | chr1.4:1244987-1245006 | MS.gene63973:CDS | 30.0% |
| !! | AACTTTAAAACAATGCATCC+TGG | + | chr1.4:1246958-1246977 | None:intergenic | 30.0% |
| !! | ATTAGGAAGTGTTGATATTG+TGG | - | chr1.4:1246369-1246388 | MS.gene63973:intron | 30.0% |
| !! | GGTTATTTGGTGTTTGTAAT+TGG | - | chr1.4:1245134-1245153 | MS.gene63973:intron | 30.0% |
| !!! | CCACGTATAATGTTCTTTTT+TGG | - | chr1.4:1245690-1245709 | MS.gene63973:intron | 30.0% |
| !!! | CGTATAATGTTCTTTTTTGG+AGG | - | chr1.4:1245693-1245712 | MS.gene63973:intron | 30.0% |
| !!! | GGTTTTTGAGAAGTGTTATT+TGG | - | chr1.4:1247064-1247083 | MS.gene63973:intron | 30.0% |
| !!! | TTTTTTTAGCGCTATTCAAG+TGG | - | chr1.4:1247285-1247304 | MS.gene63973:intron | 30.0% |
| AAAAAGAGGACATTCTACCT+AGG | + | chr1.4:1246908-1246927 | None:intergenic | 35.0% | |
| AACACCAAATTACCTTATGG+GGG | + | chr1.4:1245887-1245906 | None:intergenic | 35.0% | |
| AAGACATTCTACACAATCAC+AGG | + | chr1.4:1246603-1246622 | None:intergenic | 35.0% | |
| AATGTTGTGTTATGTTCAGG+AGG | - | chr1.4:1245817-1245836 | MS.gene63973:intron | 35.0% | |
| AATGTTGTGTTGTGTTATGG+AGG | - | chr1.4:1247042-1247061 | MS.gene63973:intron | 35.0% | |
| AGAAGCTGCTCAATAAATTG+AGG | - | chr1.4:1247894-1247913 | MS.gene63973:CDS | 35.0% | |
| AGACATTCTACACAATCACA+GGG | + | chr1.4:1246602-1246621 | None:intergenic | 35.0% | |
| AGACTCATGGTTGTCAAAAT+CGG | - | chr1.4:1247102-1247121 | MS.gene63973:intron | 35.0% | |
| ATACCCAAACGATCTTTAGT+GGG | + | chr1.4:1247131-1247150 | None:intergenic | 35.0% | |
| ATATGACAAGATCAAGAGGA+TGG | - | chr1.4:1247524-1247543 | MS.gene63973:intron | 35.0% | |
| ATCCTCTTGATCTTGTCATA+TGG | + | chr1.4:1247525-1247544 | None:intergenic | 35.0% | |
| ATGTTGTGTTATGTTCAGGA+GGG | - | chr1.4:1245818-1245837 | MS.gene63973:intron | 35.0% | |
| ATGTTGTGTTGTGTTATGGA+GGG | - | chr1.4:1247043-1247062 | MS.gene63973:intron | 35.0% | |
| ATTAGGTAGAATGTATTGGG+AGG | - | chr1.4:1246041-1246060 | MS.gene63973:intron | 35.0% | |
| GAAGCTGCTCAATAAATTGA+GGG | - | chr1.4:1247895-1247914 | MS.gene63973:CDS | 35.0% | |
| GCTTGATTATGCATGTTGTT+TGG | - | chr1.4:1246648-1246667 | MS.gene63973:intron | 35.0% | |
| TATACCCAAACGATCTTTAG+TGG | + | chr1.4:1247132-1247151 | None:intergenic | 35.0% | |
| TCATGGTCCTATTCACTTTA+GGG | - | chr1.4:1244759-1244778 | MS.gene63973:intron | 35.0% | |
| TGTGAAGAAATTTGTGCTTC+TGG | - | chr1.4:1244670-1244689 | MS.gene63973:intron | 35.0% | |
| TTAGGTAGAATGTATTGGGA+GGG | - | chr1.4:1246042-1246061 | MS.gene63973:intron | 35.0% | |
| TTATGAAAACGGCTTATGAC+AGG | - | chr1.4:1246715-1246734 | MS.gene63973:intron | 35.0% | |
| TTCAAAAACCCTCCAAAAAG+AGG | + | chr1.4:1246922-1246941 | None:intergenic | 35.0% | |
| ! | AGTGATTAATTAAGGGTGCA+TGG | - | chr1.4:1245723-1245742 | MS.gene63973:intron | 35.0% |
| ! | ATGTAGCTGTTGAGTGTTTT+TGG | - | chr1.4:1245239-1245258 | MS.gene63973:intron | 35.0% |
| ! | CTGTTTTCATTAGCTACTCT+TGG | + | chr1.4:1245482-1245501 | None:intergenic | 35.0% |
| ! | TAGAATGTCCTCTTTTTGGA+GGG | - | chr1.4:1246911-1246930 | MS.gene63973:intron | 35.0% |
| ! | TAGGTAGAATGTCCTCTTTT+TGG | - | chr1.4:1246907-1246926 | MS.gene63973:intron | 35.0% |
| !! | TAGAATGCTTTCTTTTGGGA+GGG | - | chr1.4:1246200-1246219 | MS.gene63973:intron | 35.0% |
| !! | TTGACGAGTGTTGTTTGATT+AGG | - | chr1.4:1246024-1246043 | MS.gene63973:intron | 35.0% |
| !! | TTGCTGTTGAGTGTTTTTCA+AGG | - | chr1.4:1246562-1246581 | MS.gene63973:intron | 35.0% |
| !! | TTTGGTGTTTGTAATTGGCT+TGG | - | chr1.4:1245139-1245158 | MS.gene63973:intron | 35.0% |
| AAGTGAATAGGACCATGAGA+AGG | + | chr1.4:1244757-1244776 | None:intergenic | 40.0% | |
| ATGATACCCACAGATGCTAT+AGG | - | chr1.4:1245639-1245658 | MS.gene63973:intron | 40.0% | |
| CACAAGATCTAGACAACACA+AGG | + | chr1.4:1246398-1246417 | None:intergenic | 40.0% | |
| CTCATGGTCCTATTCACTTT+AGG | - | chr1.4:1244758-1244777 | MS.gene63973:intron | 40.0% | |
| CTCCATATGACAAGATCAAG+AGG | - | chr1.4:1247520-1247539 | MS.gene63973:intron | 40.0% | |
| CTCTTGATCTTGTCATATGG+AGG | + | chr1.4:1247522-1247541 | None:intergenic | 40.0% | |
| GAAGAAATTTGTGCTTCTGG+TGG | - | chr1.4:1244673-1244692 | MS.gene63973:intron | 40.0% | |
| GACTCATGGTTGTCAAAATC+GGG | - | chr1.4:1247103-1247122 | MS.gene63973:intron | 40.0% | |
| GATCCCACTAAAGATCGTTT+GGG | - | chr1.4:1247125-1247144 | MS.gene63973:intron | 40.0% | |
| GATTCCCCCATAAGGTAATT+TGG | - | chr1.4:1245880-1245899 | MS.gene63973:intron | 40.0% | |
| TTGATCTTGTCATATGGAGG+AGG | + | chr1.4:1247519-1247538 | None:intergenic | 40.0% | |
| ! | GGTTTCTTGTTTATAGGAGC+TGG | - | chr1.4:1247829-1247848 | MS.gene63973:CDS | 40.0% |
| ! | GTAGAATGCTTTCTTTTGGG+AGG | - | chr1.4:1246199-1246218 | MS.gene63973:intron | 40.0% |
| ! | GTAGAATGTCCTCTTTTTGG+AGG | - | chr1.4:1246910-1246929 | MS.gene63973:intron | 40.0% |
| ! | TGGTTCTTACTTGAGAGCAT+CGG | + | chr1.4:1247556-1247575 | None:intergenic | 40.0% |
| ! | TGTTGTTAAGTGTTGCGTGA+TGG | - | chr1.4:1247387-1247406 | MS.gene63973:intron | 40.0% |
| ! | TTCTTGTTTATAGGAGCTGG+AGG | - | chr1.4:1247832-1247851 | MS.gene63973:CDS | 40.0% |
| !! | AGGGTGTTGAGACTTCAAAA+GGG | - | chr1.4:1247663-1247682 | MS.gene63973:intron | 40.0% |
| !! | GTAATTGGCTTGGTGATGTT+TGG | - | chr1.4:1246455-1246474 | MS.gene63973:intron | 40.0% |
| !! | TAGGGTGTTGAGACTTCAAA+AGG | - | chr1.4:1247662-1247681 | MS.gene63973:intron | 40.0% |
| !! | TCATTACTGATTCCCCCATA+AGG | - | chr1.4:1245872-1245891 | MS.gene63973:intron | 40.0% |
| !!! | AGCTGTTGAGTGTTTTTGGA+GGG | - | chr1.4:1245243-1245262 | MS.gene63973:intron | 40.0% |
| !!! | GGTTTGCCAAAAGTGTTTTG+TGG | - | chr1.4:1246221-1246240 | MS.gene63973:intron | 40.0% |
| !!! | TAGCTGTTGAGTGTTTTTGG+AGG | - | chr1.4:1245242-1245261 | MS.gene63973:intron | 40.0% |
| AGTGCGCCAAAAGATCTTAG+AGG | + | chr1.4:1244788-1244807 | None:intergenic | 45.0% | |
| AGTTGTCATCAGAGGTTGGA+TGG | - | chr1.4:1247709-1247728 | MS.gene63973:intron | 45.0% | |
| ATACCACACAAGACTAAGCG+TGG | - | chr1.4:1247453-1247472 | MS.gene63973:intron | 45.0% | |
| GGACACAAATACTGCTTGCT+CGG | - | chr1.4:1247684-1247703 | MS.gene63973:intron | 45.0% | |
| GGATCCCACTAAAGATCGTT+TGG | - | chr1.4:1247124-1247143 | MS.gene63973:intron | 45.0% | |
| GTGCGCCAAAAGATCTTAGA+GGG | + | chr1.4:1244787-1244806 | None:intergenic | 45.0% | |
| TATAGGAGCTGGAGGATAAG+AGG | - | chr1.4:1247840-1247859 | MS.gene63973:CDS | 45.0% | |
| TCAGAGGTTGGATGGAACTA+CGG | - | chr1.4:1247717-1247736 | MS.gene63973:CDS | 45.0% | |
| TTGCGACCTATAGCATCTGT+GGG | + | chr1.4:1245648-1245667 | None:intergenic | 45.0% | |
| TTTGCGACCTATAGCATCTG+TGG | + | chr1.4:1245649-1245668 | None:intergenic | 45.0% | |
| !! | GGTTCTTACTTGAGAGCATC+GGG | + | chr1.4:1247555-1247574 | None:intergenic | 45.0% |
| AAGCTCCTTTGCGACAATGG+AGG | + | chr1.4:1244620-1244639 | None:intergenic | 50.0% | |
| ACACAAGACTAAGCGTGGAG+AGG | - | chr1.4:1247458-1247477 | MS.gene63973:intron | 50.0% | |
| CTTAGCGCATATGCCTGATC+CGG | + | chr1.4:1244554-1244573 | None:intergenic | 50.0% | |
| GAACTACGGTGGCATCATCA+AGG | - | chr1.4:1247731-1247750 | MS.gene63973:CDS | 50.0% | |
| GAGAAGCTCCTTTGCGACAA+TGG | + | chr1.4:1244623-1244642 | None:intergenic | 50.0% | |
| GAGGGAGCCCTAAAGTGAAT+AGG | + | chr1.4:1244769-1244788 | None:intergenic | 50.0% | |
| GCGCGATTGAAGGTCTATGA+GGG | - | chr1.4:1247489-1247508 | MS.gene63973:intron | 50.0% | |
| GCTTCTCAATGGTCAGAAGG+TGG | - | chr1.4:1244636-1244655 | MS.gene63973:CDS | 50.0% | |
| GGACAGTTGTCATCAGAGGT+TGG | - | chr1.4:1247705-1247724 | MS.gene63973:intron | 50.0% | |
| GGAGCTTCTCAATGGTCAGA+AGG | - | chr1.4:1244633-1244652 | MS.gene63973:CDS | 50.0% | |
| GTCGCAAAGGAGCTTCTCAA+TGG | - | chr1.4:1244625-1244644 | MS.gene63973:CDS | 50.0% | |
| TCTTGCCTCCATTGTCGCAA+AGG | - | chr1.4:1244612-1244631 | MS.gene63973:CDS | 50.0% | |
| TTGCGACAATGGAGGCAAGA+CGG | + | chr1.4:1244612-1244631 | None:intergenic | 50.0% | |
| ! | ATCTTTTGGCGCACTGTTCG+TGG | - | chr1.4:1244793-1244812 | MS.gene63973:CDS | 50.0% |
| ! | GGGAGCAAGGACTTCAAGTT+GGG | + | chr1.4:1247957-1247976 | None:intergenic | 50.0% |
| ! | TCTTTTGGCGCACTGTTCGT+GGG | - | chr1.4:1244794-1244813 | MS.gene63973:CDS | 50.0% |
| !! | AGCAAGGACTTCAAGTTGGG+GGG | + | chr1.4:1247954-1247973 | None:intergenic | 50.0% |
| !! | GAGCAAGGACTTCAAGTTGG+GGG | + | chr1.4:1247955-1247974 | None:intergenic | 50.0% |
| !! | GGAGCAAGGACTTCAAGTTG+GGG | + | chr1.4:1247956-1247975 | None:intergenic | 50.0% |
| !! | TCTCCACGCTTAGTCTTGTG+TGG | + | chr1.4:1247459-1247478 | None:intergenic | 50.0% |
| !!! | GGGCTCCCTCTAAGATCTTT+TGG | - | chr1.4:1244779-1244798 | MS.gene63973:intron | 50.0% |
| CGCGCGATTGAAGGTCTATG+AGG | - | chr1.4:1247488-1247507 | MS.gene63973:intron | 55.0% | |
| CGGGAGCAAGGACTTCAAGT+TGG | + | chr1.4:1247958-1247977 | None:intergenic | 55.0% | |
| GAGGTTGGATGGAACTACGG+TGG | - | chr1.4:1247720-1247739 | MS.gene63973:CDS | 55.0% | |
| GATAAGAGGAAGGAACGCGC+AGG | - | chr1.4:1247854-1247873 | MS.gene63973:CDS | 55.0% | |
| GCTCGGACAGTTGTCATCAG+AGG | - | chr1.4:1247701-1247720 | MS.gene63973:intron | 55.0% | |
| GGAGCTGGAGGATAAGAGGA+AGG | - | chr1.4:1247844-1247863 | MS.gene63973:CDS | 55.0% | |
| GAGGAAGGAACGCGCAGGTT+TGG | - | chr1.4:1247859-1247878 | MS.gene63973:CDS | 60.0% | |
| AGGCAAGACGGCCGAGCATG+TGG | + | chr1.4:1244600-1244619 | None:intergenic | 65.0% | |
| CAAGACGGCCGAGCATGTGG+TGG | + | chr1.4:1244597-1244616 | None:intergenic | 65.0% | |
| GGCTGCACTCGCGCGATTGA+AGG | - | chr1.4:1247479-1247498 | MS.gene63973:intron | 65.0% | |
| ACGGCCGAGCATGTGGTGGC+GGG | + | chr1.4:1244593-1244612 | None:intergenic | 70.0% | |
| GACGCCCGCCACCACATGCT+CGG | - | chr1.4:1244586-1244605 | MS.gene63973:CDS | 70.0% | |
| GACGGCCGAGCATGTGGTGG+CGG | + | chr1.4:1244594-1244613 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 1244544 | 1247988 | 1244544 | ID=MS.gene63973 |
| chr1.4 | mRNA | 1244544 | 1247988 | 1244544 | ID=MS.gene63973.t1;Parent=MS.gene63973 |
| chr1.4 | exon | 1247717 | 1247988 | 1247717 | ID=MS.gene63973.t1.exon1;Parent=MS.gene63973.t1 |
| chr1.4 | CDS | 1247717 | 1247988 | 1247717 | ID=cds.MS.gene63973.t1;Parent=MS.gene63973.t1 |
| chr1.4 | exon | 1244967 | 1245083 | 1244967 | ID=MS.gene63973.t1.exon2;Parent=MS.gene63973.t1 |
| chr1.4 | CDS | 1244967 | 1245083 | 1244967 | ID=cds.MS.gene63973.t1;Parent=MS.gene63973.t1 |
| chr1.4 | exon | 1244780 | 1244867 | 1244780 | ID=MS.gene63973.t1.exon3;Parent=MS.gene63973.t1 |
| chr1.4 | CDS | 1244780 | 1244867 | 1244780 | ID=cds.MS.gene63973.t1;Parent=MS.gene63973.t1 |
| chr1.4 | exon | 1244544 | 1244687 | 1244544 | ID=MS.gene63973.t1.exon4;Parent=MS.gene63973.t1 |
| chr1.4 | CDS | 1244544 | 1244687 | 1244544 | ID=cds.MS.gene63973.t1;Parent=MS.gene63973.t1 |
| Gene Sequence |
| Protein sequence |
