Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65076.t1 | XP_013448778.1 | 99.5 | 206 | 1 | 0 | 1 | 206 | 1 | 206 | 4.70E-110 | 407.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65076.t1 | Q9FKC0 | 85.9 | 206 | 29 | 0 | 1 | 206 | 1 | 206 | 2.5e-99 | 362.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65076.t1 | B7FGF9 | 99.5 | 206 | 1 | 0 | 1 | 206 | 1 | 206 | 3.4e-110 | 407.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene65076 | 0.802154 | 6.42E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene65076 | 0.800364 | 1.49E-48 | -1.69E-46 |
| MS.gene050277 | MS.gene65076 | 0.861011 | 1.38E-63 | -1.69E-46 |
| MS.gene050290 | MS.gene65076 | 0.85573 | 5.18E-62 | -1.69E-46 |
| MS.gene050320 | MS.gene65076 | 0.822946 | 1.80E-53 | -1.69E-46 |
| MS.gene050752 | MS.gene65076 | 0.820398 | 7.01E-53 | -1.69E-46 |
| MS.gene050838 | MS.gene65076 | 0.849729 | 2.68E-60 | -1.69E-46 |
| MS.gene050916 | MS.gene65076 | 0.880882 | 3.81E-70 | -1.69E-46 |
| MS.gene050955 | MS.gene65076 | 0.805875 | 1.08E-49 | -1.69E-46 |
| MS.gene051063 | MS.gene65076 | 0.834342 | 3.17E-56 | -1.69E-46 |
| MS.gene051330 | MS.gene65076 | 0.849035 | 4.19E-60 | -1.69E-46 |
| MS.gene05134 | MS.gene65076 | 0.810954 | 8.91E-51 | -1.69E-46 |
| MS.gene051746 | MS.gene65076 | 0.882448 | 1.03E-70 | -1.69E-46 |
| MS.gene051748 | MS.gene65076 | 0.859459 | 4.08E-63 | -1.69E-46 |
| MS.gene051756 | MS.gene65076 | 0.807317 | 5.36E-50 | -1.69E-46 |
| MS.gene051850 | MS.gene65076 | 0.853335 | 2.56E-61 | -1.69E-46 |
| MS.gene051903 | MS.gene65076 | 0.891383 | 4.18E-74 | -1.69E-46 |
| MS.gene052947 | MS.gene65076 | 0.872525 | 2.97E-67 | -1.69E-46 |
| MS.gene053109 | MS.gene65076 | 0.837611 | 4.69E-57 | -1.69E-46 |
| MS.gene053952 | MS.gene65076 | 0.847798 | 9.21E-60 | -1.69E-46 |
| MS.gene054403 | MS.gene65076 | 0.820787 | 5.70E-53 | -1.69E-46 |
| MS.gene054937 | MS.gene65076 | 0.889201 | 3.00E-73 | -1.69E-46 |
| MS.gene055162 | MS.gene65076 | 0.825855 | 3.73E-54 | -1.69E-46 |
| MS.gene055424 | MS.gene65076 | 0.802482 | 5.49E-49 | -1.69E-46 |
| MS.gene055555 | MS.gene65076 | 0.812464 | 4.18E-51 | -1.69E-46 |
| MS.gene056075 | MS.gene65076 | 0.885142 | 1.05E-71 | -1.69E-46 |
| MS.gene056601 | MS.gene65076 | 0.813659 | 2.29E-51 | -1.69E-46 |
| MS.gene056631 | MS.gene65076 | 0.873505 | 1.40E-67 | -1.69E-46 |
| MS.gene056917 | MS.gene65076 | 0.825243 | 5.21E-54 | -1.69E-46 |
| MS.gene057094 | MS.gene65076 | 0.874829 | 4.97E-68 | -1.69E-46 |
| MS.gene057206 | MS.gene65076 | 0.810845 | 9.41E-51 | -1.69E-46 |
| MS.gene057234 | MS.gene65076 | 0.830719 | 2.51E-55 | -1.69E-46 |
| MS.gene057705 | MS.gene65076 | 0.833861 | 4.18E-56 | -1.69E-46 |
| MS.gene058238 | MS.gene65076 | 0.81054 | 1.10E-50 | -1.69E-46 |
| MS.gene058245 | MS.gene65076 | 0.804923 | 1.71E-49 | -1.69E-46 |
| MS.gene058364 | MS.gene65076 | 0.814693 | 1.35E-51 | -1.69E-46 |
| MS.gene058906 | MS.gene65076 | 0.827752 | 1.32E-54 | -1.69E-46 |
| MS.gene059726 | MS.gene65076 | 0.833259 | 5.91E-56 | -1.69E-46 |
| MS.gene059898 | MS.gene65076 | 0.838296 | 3.13E-57 | -1.69E-46 |
| MS.gene06001 | MS.gene65076 | 0.903683 | 2.69E-79 | -1.69E-46 |
| MS.gene06011 | MS.gene65076 | 0.832568 | 8.78E-56 | -1.69E-46 |
| MS.gene060429 | MS.gene65076 | 0.803211 | 3.89E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene65076 | 0.820789 | 5.70E-53 | -1.69E-46 |
| MS.gene060856 | MS.gene65076 | 0.803175 | 3.95E-49 | -1.69E-46 |
| MS.gene061145 | MS.gene65076 | 0.851777 | 7.11E-61 | -1.69E-46 |
| MS.gene06118 | MS.gene65076 | 0.825345 | 4.93E-54 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65076.t1 | MTR_7g057770 | 99.515 | 206 | 1 | 0 | 1 | 206 | 1 | 206 | 5.69e-152 | 419 |
| MS.gene65076.t1 | MTR_1g023590 | 94.660 | 206 | 11 | 0 | 1 | 206 | 1 | 206 | 1.22e-143 | 399 |
| MS.gene65076.t1 | MTR_5g083790 | 90.291 | 206 | 20 | 0 | 1 | 206 | 1 | 206 | 8.25e-138 | 384 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65076.t1 | AT5G48760 | 85.922 | 206 | 29 | 0 | 1 | 206 | 1 | 206 | 1.34e-133 | 373 |
| MS.gene65076.t1 | AT5G48760 | 85.922 | 206 | 29 | 0 | 1 | 206 | 1 | 206 | 1.34e-133 | 373 |
| MS.gene65076.t1 | AT4G13170 | 83.981 | 206 | 33 | 0 | 1 | 206 | 1 | 206 | 2.84e-131 | 367 |
| MS.gene65076.t1 | AT3G07110 | 83.981 | 206 | 33 | 0 | 1 | 206 | 1 | 206 | 3.10e-131 | 367 |
| MS.gene65076.t1 | AT3G24830 | 82.524 | 206 | 36 | 0 | 1 | 206 | 1 | 206 | 7.54e-130 | 363 |
| MS.gene65076.t1 | AT3G07110 | 83.575 | 207 | 33 | 1 | 1 | 206 | 1 | 207 | 2.31e-129 | 362 |
Find 58 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCATGGTCCTATTCATTTC+AGG | 0.115584 | 7.1:+43675916 | MS.gene65076:CDS |
| GTGCTTCTGGTGGTCTTGTT+AGG | 0.322378 | 7.1:+43675841 | MS.gene65076:CDS |
| GGGCTCCCAGTAAAATCTTT+TGG | 0.331110 | 7.1:+43675937 | MS.gene65076:CDS |
| TGAAGTATATGAGATTTCTT+AGG | 0.358557 | 7.1:+43675871 | MS.gene65076:CDS |
| TCATGGTCCTATTCATTTCA+GGG | 0.370228 | 7.1:+43675917 | MS.gene65076:CDS |
| ACCAAAATAACGCACCTTGA+TGG | 0.377840 | 7.1:-43677022 | None:intergenic |
| TGTGAAGAGATTTGTGCTTC+TGG | 0.391599 | 7.1:+43675828 | MS.gene65076:CDS |
| TAGGGTGTTGAGGCTTCAAA+AGG | 0.434306 | 7.1:+43676939 | MS.gene65076:intron |
| AAATACTACTCAGTACTTAA+CGG | 0.437826 | 7.1:-43677250 | None:intergenic |
| CTGGGAGCCCTGAAATGAAT+AGG | 0.442962 | 7.1:-43675924 | None:intergenic |
| GTGGAGAGGCTGCACTTGCC+AGG | 0.446939 | 7.1:+43676765 | MS.gene65076:CDS |
| CTCCATATGACAAAATTAAG+AGG | 0.448931 | 7.1:+43676813 | MS.gene65076:CDS |
| AATACTACTCAGTACTTAAC+GGG | 0.453354 | 7.1:-43677249 | None:intergenic |
| CGGGAGCAAGAATTTCAAGT+TGG | 0.456903 | 7.1:-43677230 | None:intergenic |
| GGGAGCAAGAATTTCAAGTT+GGG | 0.464166 | 7.1:-43677229 | None:intergenic |
| ATATGAGATTTCTTAGGAAG+AGG | 0.471394 | 7.1:+43675877 | MS.gene65076:CDS |
| AGAAGCAGATCAATAAATTG+AGG | 0.485847 | 7.1:+43677169 | MS.gene65076:CDS |
| AATACTTACTTAAGAGCATC+GGG | 0.507877 | 7.1:-43676845 | None:intergenic |
| AATTGTCCGCAGAGGTTGGA+TGG | 0.512881 | 7.1:+43676986 | MS.gene65076:CDS |
| GGACACAAATACTGCACCCT+TGG | 0.514031 | 7.1:+43676961 | MS.gene65076:CDS |
| TCTCCACGCTTTGTCTTGTG+TGG | 0.520427 | 7.1:-43676749 | None:intergenic |
| GTTGCAAAGGAGCTTCTCAA+TGG | 0.520484 | 7.1:+43675783 | MS.gene65076:CDS |
| TGGAGACAAAGAGGAAGGAA+AGG | 0.523797 | 7.1:+43677124 | MS.gene65076:CDS |
| GAAGCAGATCAATAAATTGA+GGG | 0.524740 | 7.1:+43677170 | MS.gene65076:CDS |
| GGCTGCACTTGCCAGGATGA+AGG | 0.525665 | 7.1:+43676772 | MS.gene65076:CDS |
| CAATACTTACTTAAGAGCAT+CGG | 0.537113 | 7.1:-43676846 | None:intergenic |
| GGACAATTGTCCGCAGAGGT+TGG | 0.541294 | 7.1:+43676982 | MS.gene65076:CDS |
| GATGCAAGGCACCACATGCT+AGG | 0.548689 | 7.1:+43675744 | MS.gene65076:CDS |
| ACCTTCATACACCTTCATCC+TGG | 0.554960 | 7.1:-43676783 | None:intergenic |
| GCCAGGATGAAGGTGTATGA+AGG | 0.560258 | 7.1:+43676782 | MS.gene65076:CDS |
| TGGTTGAAATTAGGGTGTTG+AGG | 0.577187 | 7.1:+43676929 | MS.gene65076:intron |
| GAACTACGCCGGCACCATCA+AGG | 0.577844 | 7.1:+43677008 | MS.gene65076:CDS |
| AACAGGAGCTGGAGACAAAG+AGG | 0.580730 | 7.1:+43677115 | MS.gene65076:intron |
| ACTTGCCTCCATCGTTGCAA+AGG | 0.580774 | 7.1:+43675770 | MS.gene65076:CDS |
| GAGAAGCTCCTTTGCAACGA+TGG | 0.584142 | 7.1:-43675778 | None:intergenic |
| ATATGACAAAATTAAGAGGA+TGG | 0.585968 | 7.1:+43676817 | MS.gene65076:CDS |
| GAAGAGATTTGTGCTTCTGG+TGG | 0.586152 | 7.1:+43675831 | MS.gene65076:CDS |
| ATAACGCACCTTGATGGTGC+CGG | 0.587747 | 7.1:-43677016 | None:intergenic |
| GGAGACAAAGAGGAAGGAAA+GGG | 0.597942 | 7.1:+43677125 | MS.gene65076:CDS |
| GGAGCTTCTCAATGGACAGA+AGG | 0.600116 | 7.1:+43675791 | MS.gene65076:CDS |
| ATGAACACAAAGCCTTCTCA+TGG | 0.602489 | 7.1:+43675900 | MS.gene65076:CDS |
| AGGTATCTGCGCAAAGAGGG+TGG | 0.610561 | 7.1:+43675716 | MS.gene65076:CDS |
| TTCAGGTATCTGCGCAAAGA+GGG | 0.610853 | 7.1:+43675713 | MS.gene65076:CDS |
| CCTCTGCGGACAATTGTCCA+AGG | 0.611851 | 7.1:-43676978 | None:intergenic |
| AGGGTGTTGAGGCTTCAAAA+GGG | 0.617854 | 7.1:+43676940 | MS.gene65076:intron |
| AGAGGGTGGTGATCGATGCA+AGG | 0.618099 | 7.1:+43675730 | MS.gene65076:CDS |
| GGAGCTGGAGACAAAGAGGA+AGG | 0.618380 | 7.1:+43677119 | MS.gene65076:intron |
| GTTCAGGTATCTGCGCAAAG+AGG | 0.631106 | 7.1:+43675712 | MS.gene65076:CDS |
| ATTCCACACAAGACAAAGCG+TGG | 0.632644 | 7.1:+43676746 | MS.gene65076:CDS |
| CTCTGCGGACAATTGTCCAA+GGG | 0.634253 | 7.1:-43676977 | None:intergenic |
| AAGCTCCTTTGCAACGATGG+AGG | 0.638563 | 7.1:-43675775 | None:intergenic |
| GGAGCAAGAATTTCAAGTTG+GGG | 0.639957 | 7.1:-43677228 | None:intergenic |
| AAATGAATAGGACCATGAGA+AGG | 0.659451 | 7.1:-43675912 | None:intergenic |
| ACACAAGACAAAGCGTGGAG+AGG | 0.661685 | 7.1:+43676751 | MS.gene65076:CDS |
| CCTTGGACAATTGTCCGCAG+AGG | 0.672294 | 7.1:+43676978 | MS.gene65076:CDS |
| GAGGTTGGATGGAACTACGC+CGG | 0.675697 | 7.1:+43676997 | MS.gene65076:CDS |
| AGGCAAGTCTACCTAGCATG+TGG | 0.685004 | 7.1:-43675755 | None:intergenic |
| GTAGTTCCATCCAACCTCTG+CGG | 0.754715 | 7.1:-43676992 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAGAATTTTTATTGAAT+TGG | + | chr7.1:43676887-43676906 | MS.gene65076:intron | 10.0% |
| !! | TTAATTCATAAATCACATTT+AGG | + | chr7.1:43676095-43676114 | MS.gene65076:intron | 15.0% |
| !!! | TATTGATTAATGTTTGTAAT+TGG | + | chr7.1:43676204-43676223 | MS.gene65076:intron | 15.0% |
| !! | TTGTATTTGATAAATAACAG+CGG | + | chr7.1:43677065-43677084 | MS.gene65076:intron | 20.0% |
| !! | TTGTTTAGTGTTATAGTATT+TGG | + | chr7.1:43676332-43676351 | MS.gene65076:intron | 20.0% |
| !!! | ATTGCATTTTTGATAATACT+AGG | + | chr7.1:43676064-43676083 | MS.gene65076:intron | 20.0% |
| !!! | GTTAAGTGATTTTTTTAATG+TGG | + | chr7.1:43676226-43676245 | MS.gene65076:intron | 20.0% |
| !!! | TTAATTTTTCTCTTGTTAAC+AGG | + | chr7.1:43677098-43677117 | MS.gene65076:intron | 20.0% |
| !!! | TTTTTGTTAAATCGCATTTT+TGG | + | chr7.1:43676011-43676030 | MS.gene65076:intron | 20.0% |
| ! | ATATGACAAAATTAAGAGGA+TGG | + | chr7.1:43676817-43676836 | MS.gene65076:CDS | 25.0% |
| ! | TGAAGTATATGAGATTTCTT+AGG | + | chr7.1:43675871-43675890 | MS.gene65076:CDS | 25.0% |
| ! | TTAAAGATGAGTTGTTTAAG+AGG | + | chr7.1:43676255-43676274 | MS.gene65076:intron | 25.0% |
| ! | TTGATTATTGTGTTCTTTGT+TGG | + | chr7.1:43676410-43676429 | MS.gene65076:intron | 25.0% |
| !! | ATCACATTTAGGATATTACT+AGG | + | chr7.1:43676106-43676125 | MS.gene65076:intron | 25.0% |
| !! | ATCCTCTTAATTTTGTCATA+TGG | - | chr7.1:43676818-43676837 | None:intergenic | 25.0% |
| !!! | TATTACTAGGTTGTTGTTTT+TGG | + | chr7.1:43676035-43676054 | MS.gene65076:intron | 25.0% |
| !!! | TGAGTGATTTGTAATTGTTT+TGG | + | chr7.1:43676686-43676705 | MS.gene65076:intron | 25.0% |
| !!! | TGATTTGTAATTGTTTTGGT+GGG | + | chr7.1:43676690-43676709 | MS.gene65076:intron | 25.0% |
| !!! | TTGAAAGTTGTGTTCTTTTT+TGG | + | chr7.1:43676527-43676546 | MS.gene65076:intron | 25.0% |
| !!! | TTGTGAATTGTGATGTTTTT+TGG | + | chr7.1:43676475-43676494 | MS.gene65076:intron | 25.0% |
| AGAAGCAGATCAATAAATTG+AGG | + | chr7.1:43677169-43677188 | MS.gene65076:CDS | 30.0% | |
| ATATGAGATTTCTTAGGAAG+AGG | + | chr7.1:43675877-43675896 | MS.gene65076:CDS | 30.0% | |
| ATTATTGTGTTCTTTGTTGG+AGG | + | chr7.1:43676413-43676432 | MS.gene65076:intron | 30.0% | |
| CTCCATATGACAAAATTAAG+AGG | + | chr7.1:43676813-43676832 | MS.gene65076:CDS | 30.0% | |
| GAAGCAGATCAATAAATTGA+GGG | + | chr7.1:43677170-43677189 | MS.gene65076:CDS | 30.0% | |
| GAATTTGAATACTGAATGAG+TGG | + | chr7.1:43676909-43676928 | MS.gene65076:intron | 30.0% | |
| TGAATGAGTGGTTGAAATTA+GGG | + | chr7.1:43676921-43676940 | MS.gene65076:intron | 30.0% | |
| TTATTGTGTTCTTTGTTGGA+GGG | + | chr7.1:43676414-43676433 | MS.gene65076:intron | 30.0% | |
| TTGTATGATGTGTTCTTGTT+TGG | + | chr7.1:43676583-43676602 | MS.gene65076:intron | 30.0% | |
| ! | CAATACTTACTTAAGAGCAT+CGG | - | chr7.1:43676849-43676868 | None:intergenic | 30.0% |
| ! | CTCTTAATTTTGTCATATGG+AGG | - | chr7.1:43676815-43676834 | None:intergenic | 30.0% |
| ! | GTGTTATAGTATTTGGTGAA+TGG | + | chr7.1:43676339-43676358 | MS.gene65076:intron | 30.0% |
| ! | TTAATTTTGTCATATGGAGG+TGG | - | chr7.1:43676812-43676831 | None:intergenic | 30.0% |
| !! | AATACTTACTTAAGAGCATC+GGG | - | chr7.1:43676848-43676867 | None:intergenic | 30.0% |
| !! | TCGCATTTTTGGATATTACT+AGG | + | chr7.1:43676022-43676041 | MS.gene65076:intron | 30.0% |
| !!! | AAAGTTGTGTTCTTTTTTGG+AGG | + | chr7.1:43676530-43676549 | MS.gene65076:intron | 30.0% |
| !!! | GAATTGTGATGTTTTTTGGA+GGG | + | chr7.1:43676479-43676498 | MS.gene65076:intron | 30.0% |
| !!! | GTGATTTGTAATTGTTTTGG+TGG | + | chr7.1:43676689-43676708 | MS.gene65076:intron | 30.0% |
| !!! | TGAAGTGTTGTCTTGTTTTT+TGG | + | chr7.1:43676367-43676386 | MS.gene65076:intron | 30.0% |
| !!! | TGAATTGTGATGTTTTTTGG+AGG | + | chr7.1:43676478-43676497 | MS.gene65076:intron | 30.0% |
| AAATGAATAGGACCATGAGA+AGG | - | chr7.1:43675915-43675934 | None:intergenic | 35.0% | |
| CTGAATGAGTGGTTGAAATT+AGG | + | chr7.1:43676920-43676939 | MS.gene65076:intron | 35.0% | |
| TCATGGTCCTATTCATTTCA+GGG | + | chr7.1:43675917-43675936 | MS.gene65076:CDS | 35.0% | |
| ! | AGTACGCCAAAAGATTTTAC+TGG | - | chr7.1:43675946-43675965 | None:intergenic | 35.0% |
| ! | ATGATGTGTTCTTGTTTGGA+GGG | + | chr7.1:43676587-43676606 | MS.gene65076:intron | 35.0% |
| ! | GTACGCCAAAAGATTTTACT+GGG | - | chr7.1:43675945-43675964 | None:intergenic | 35.0% |
| ! | TATGATGTGTTCTTGTTTGG+AGG | + | chr7.1:43676586-43676605 | MS.gene65076:intron | 35.0% |
| ! | TGAGTGATCTGTTGTTGTTA+TGG | + | chr7.1:43676632-43676651 | MS.gene65076:intron | 35.0% |
| ! | TGATCTGTTGTTGTTATGGA+GGG | + | chr7.1:43676636-43676655 | MS.gene65076:intron | 35.0% |
| ACCAAAATAACGCACCTTGA+TGG | - | chr7.1:43677025-43677044 | None:intergenic | 40.0% | |
| ATGAACACAAAGCCTTCTCA+TGG | + | chr7.1:43675900-43675919 | MS.gene65076:CDS | 40.0% | |
| CTCATGGTCCTATTCATTTC+AGG | + | chr7.1:43675916-43675935 | MS.gene65076:CDS | 40.0% | |
| TGTGAAGAGATTTGTGCTTC+TGG | + | chr7.1:43675828-43675847 | MS.gene65076:CDS | 40.0% | |
| TTTCTCTTGTTAACAGGAGC+TGG | + | chr7.1:43677104-43677123 | MS.gene65076:intron | 40.0% | |
| ! | ACCATCAAGGTGCGTTATTT+TGG | + | chr7.1:43677021-43677040 | MS.gene65076:intron | 40.0% |
| ! | GTGATCTGTTGTTGTTATGG+AGG | + | chr7.1:43676635-43676654 | MS.gene65076:intron | 40.0% |
| !! | GGAGCAAGAATTTCAAGTTG+GGG | - | chr7.1:43677231-43677250 | None:intergenic | 40.0% |
| !! | GGGAGCAAGAATTTCAAGTT+GGG | - | chr7.1:43677232-43677251 | None:intergenic | 40.0% |
| !! | TGGTTGAAATTAGGGTGTTG+AGG | + | chr7.1:43676929-43676948 | MS.gene65076:intron | 40.0% |
| ACCTTCATACACCTTCATCC+TGG | - | chr7.1:43676786-43676805 | None:intergenic | 45.0% | |
| ATTCCACACAAGACAAAGCG+TGG | + | chr7.1:43676746-43676765 | MS.gene65076:CDS | 45.0% | |
| GAAGAGATTTGTGCTTCTGG+TGG | + | chr7.1:43675831-43675850 | MS.gene65076:CDS | 45.0% | |
| GGAGACAAAGAGGAAGGAAA+GGG | + | chr7.1:43677125-43677144 | MS.gene65076:CDS | 45.0% | |
| GTTGCAAAGGAGCTTCTCAA+TGG | + | chr7.1:43675783-43675802 | MS.gene65076:CDS | 45.0% | |
| TGGAGACAAAGAGGAAGGAA+AGG | + | chr7.1:43677124-43677143 | MS.gene65076:CDS | 45.0% | |
| TTCAGGTATCTGCGCAAAGA+GGG | + | chr7.1:43675713-43675732 | MS.gene65076:CDS | 45.0% | |
| ! | ATCTTTTGGCGTACTGTTCG+TGG | + | chr7.1:43675951-43675970 | MS.gene65076:CDS | 45.0% |
| ! | CGGGAGCAAGAATTTCAAGT+TGG | - | chr7.1:43677233-43677252 | None:intergenic | 45.0% |
| ! | GGGCTCCCAGTAAAATCTTT+TGG | + | chr7.1:43675937-43675956 | MS.gene65076:CDS | 45.0% |
| ! | TCTTTTGGCGTACTGTTCGT+GGG | + | chr7.1:43675952-43675971 | MS.gene65076:CDS | 45.0% |
| !! | AGGGTGTTGAGGCTTCAAAA+GGG | + | chr7.1:43676940-43676959 | MS.gene65076:intron | 45.0% |
| !! | TAGGGTGTTGAGGCTTCAAA+AGG | + | chr7.1:43676939-43676958 | MS.gene65076:intron | 45.0% |
| AACAGGAGCTGGAGACAAAG+AGG | + | chr7.1:43677115-43677134 | MS.gene65076:intron | 50.0% | |
| AAGCTCCTTTGCAACGATGG+AGG | - | chr7.1:43675778-43675797 | None:intergenic | 50.0% | |
| AATTGTCCGCAGAGGTTGGA+TGG | + | chr7.1:43676986-43677005 | MS.gene65076:CDS | 50.0% | |
| ACACAAGACAAAGCGTGGAG+AGG | + | chr7.1:43676751-43676770 | MS.gene65076:CDS | 50.0% | |
| ACTTGCCTCCATCGTTGCAA+AGG | + | chr7.1:43675770-43675789 | MS.gene65076:CDS | 50.0% | |
| AGGCAAGTCTACCTAGCATG+TGG | - | chr7.1:43675758-43675777 | None:intergenic | 50.0% | |
| CTCTGCGGACAATTGTCCAA+GGG | - | chr7.1:43676980-43676999 | None:intergenic | 50.0% | |
| CTGGGAGCCCTGAAATGAAT+AGG | - | chr7.1:43675927-43675946 | None:intergenic | 50.0% | |
| GAGAAGCTCCTTTGCAACGA+TGG | - | chr7.1:43675781-43675800 | None:intergenic | 50.0% | |
| GGACACAAATACTGCACCCT+TGG | + | chr7.1:43676961-43676980 | MS.gene65076:CDS | 50.0% | |
| GGAGCTTCTCAATGGACAGA+AGG | + | chr7.1:43675791-43675810 | MS.gene65076:CDS | 50.0% | |
| GTAGTTCCATCCAACCTCTG+CGG | - | chr7.1:43676995-43677014 | None:intergenic | 50.0% | |
| GTTCAGGTATCTGCGCAAAG+AGG | + | chr7.1:43675712-43675731 | MS.gene65076:CDS | 50.0% | |
| TCTCCACGCTTTGTCTTGTG+TGG | - | chr7.1:43676752-43676771 | None:intergenic | 50.0% | |
| ! | GCCAGGATGAAGGTGTATGA+AGG | + | chr7.1:43676782-43676801 | MS.gene65076:CDS | 50.0% |
| !! | ATAACGCACCTTGATGGTGC+CGG | - | chr7.1:43677019-43677038 | None:intergenic | 50.0% |
| !! | GTGCTTCTGGTGGTCTTGTT+AGG | + | chr7.1:43675841-43675860 | MS.gene65076:CDS | 50.0% |
| AGAGGGTGGTGATCGATGCA+AGG | + | chr7.1:43675730-43675749 | MS.gene65076:CDS | 55.0% | |
| AGGTATCTGCGCAAAGAGGG+TGG | + | chr7.1:43675716-43675735 | MS.gene65076:CDS | 55.0% | |
| CCTCTGCGGACAATTGTCCA+AGG | - | chr7.1:43676981-43677000 | None:intergenic | 55.0% | |
| CCTTGGACAATTGTCCGCAG+AGG | + | chr7.1:43676978-43676997 | MS.gene65076:CDS | 55.0% | |
| GAGGTTGGATGGAACTACGC+CGG | + | chr7.1:43676997-43677016 | MS.gene65076:CDS | 55.0% | |
| GGACAATTGTCCGCAGAGGT+TGG | + | chr7.1:43676982-43677001 | MS.gene65076:CDS | 55.0% | |
| GGAGCTGGAGACAAAGAGGA+AGG | + | chr7.1:43677119-43677138 | MS.gene65076:intron | 55.0% | |
| ! | GATGCAAGGCACCACATGCT+AGG | + | chr7.1:43675744-43675763 | MS.gene65076:CDS | 55.0% |
| GAACTACGCCGGCACCATCA+AGG | + | chr7.1:43677008-43677027 | MS.gene65076:CDS | 60.0% | |
| GGCTGCACTTGCCAGGATGA+AGG | + | chr7.1:43676772-43676791 | MS.gene65076:CDS | 60.0% | |
| GTGGAGAGGCTGCACTTGCC+AGG | + | chr7.1:43676765-43676784 | MS.gene65076:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 43675702 | 43677263 | 43675702 | ID=MS.gene65076 |
| chr7.1 | mRNA | 43675702 | 43677263 | 43675702 | ID=MS.gene65076.t1;Parent=MS.gene65076 |
| chr7.1 | exon | 43675702 | 43675973 | 43675702 | ID=MS.gene65076.t1.exon1;Parent=MS.gene65076.t1 |
| chr7.1 | CDS | 43675702 | 43675973 | 43675702 | ID=cds.MS.gene65076.t1;Parent=MS.gene65076.t1 |
| chr7.1 | exon | 43676742 | 43676858 | 43676742 | ID=MS.gene65076.t1.exon2;Parent=MS.gene65076.t1 |
| chr7.1 | CDS | 43676742 | 43676858 | 43676742 | ID=cds.MS.gene65076.t1;Parent=MS.gene65076.t1 |
| chr7.1 | exon | 43676942 | 43677029 | 43676942 | ID=MS.gene65076.t1.exon3;Parent=MS.gene65076.t1 |
| chr7.1 | CDS | 43676942 | 43677029 | 43676942 | ID=cds.MS.gene65076.t1;Parent=MS.gene65076.t1 |
| chr7.1 | exon | 43677120 | 43677263 | 43677120 | ID=MS.gene65076.t1.exon4;Parent=MS.gene65076.t1 |
| chr7.1 | CDS | 43677120 | 43677263 | 43677120 | ID=cds.MS.gene65076.t1;Parent=MS.gene65076.t1 |
| Gene Sequence |
| Protein sequence |
