Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27028.t1 | XP_003589380.1 | 100 | 206 | 0 | 0 | 1 | 206 | 1 | 206 | 9.50E-111 | 409.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27028.t1 | Q9FKC0 | 85.9 | 206 | 29 | 0 | 1 | 206 | 1 | 206 | 1.2e-98 | 360.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27028.t1 | B7FMG6 | 100.0 | 206 | 0 | 0 | 1 | 206 | 1 | 206 | 6.9e-111 | 409.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene27028 | 0.847065 | 1.46E-59 | -1.69E-46 |
| MS.gene051925 | MS.gene27028 | 0.804068 | 2.58E-49 | -1.69E-46 |
| MS.gene058711 | MS.gene27028 | -0.840024 | 1.12E-57 | -1.69E-46 |
| MS.gene059340 | MS.gene27028 | 0.802352 | 5.84E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27028.t1 | MTR_1g023590 | 100.000 | 206 | 0 | 0 | 1 | 206 | 1 | 206 | 1.42e-150 | 416 |
| MS.gene27028.t1 | MTR_7g057770 | 94.660 | 206 | 11 | 0 | 1 | 206 | 1 | 206 | 1.89e-143 | 398 |
| MS.gene27028.t1 | MTR_5g083790 | 91.262 | 206 | 18 | 0 | 1 | 206 | 1 | 206 | 4.04e-138 | 384 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27028.t1 | AT5G48760 | 85.922 | 206 | 29 | 0 | 1 | 206 | 1 | 206 | 1.83e-131 | 368 |
| MS.gene27028.t1 | AT5G48760 | 85.922 | 206 | 29 | 0 | 1 | 206 | 1 | 206 | 1.83e-131 | 368 |
| MS.gene27028.t1 | AT3G07110 | 84.951 | 206 | 31 | 0 | 1 | 206 | 1 | 206 | 6.32e-130 | 364 |
| MS.gene27028.t1 | AT4G13170 | 84.951 | 206 | 31 | 0 | 1 | 206 | 1 | 206 | 8.69e-130 | 363 |
| MS.gene27028.t1 | AT3G07110 | 84.541 | 207 | 31 | 1 | 1 | 206 | 1 | 207 | 2.64e-128 | 360 |
| MS.gene27028.t1 | AT3G24830 | 83.495 | 206 | 34 | 0 | 1 | 206 | 1 | 206 | 5.08e-128 | 359 |
Find 61 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGGTCCTATTCACTTTA+GGG | 0.192347 | 1.3:-1628198 | MS.gene27028:CDS |
| CTCATGGTCCTATTCACTTT+AGG | 0.198145 | 1.3:-1628199 | MS.gene27028:CDS |
| GGGCTCCCTCTAAGATCTTT+TGG | 0.279612 | 1.3:-1628178 | MS.gene27028:CDS |
| GACGGCCGAGCATGTGGTGG+CGG | 0.371739 | 1.3:+1628366 | None:intergenic |
| GGGAGCAAGGACTTCAAGTT+GGG | 0.380650 | 1.3:+1625002 | None:intergenic |
| TATAGGAGCTGGAGGATAAG+AGG | 0.397991 | 1.3:-1625116 | MS.gene27028:intron |
| TGTGAAGAAATTTGTGCTTC+AGG | 0.399041 | 1.3:-1628287 | MS.gene27028:CDS |
| TGAAGTATATGAGATTTCTA+AGG | 0.407625 | 1.3:-1628244 | MS.gene27028:CDS |
| GGCTGCACTCGCGCGATTGA+AGG | 0.416813 | 1.3:-1625477 | MS.gene27028:CDS |
| GAGGAAGGAACGCGCAGGTT+TGG | 0.417217 | 1.3:-1625097 | MS.gene27028:CDS |
| TAGGGTGTTGAGACTTCAAA+AGG | 0.434162 | 1.3:-1625294 | MS.gene27028:CDS |
| ATCCTCTTGATCTTGTCATA+TGG | 0.437541 | 1.3:+1625434 | None:intergenic |
| CGGGAGCAAGGACTTCAAGT+TGG | 0.439216 | 1.3:+1625001 | None:intergenic |
| AATAGTACTCAGTACTTAAC+GGG | 0.449959 | 1.3:+1624982 | None:intergenic |
| AAATAGTACTCAGTACTTAA+CGG | 0.452401 | 1.3:+1624981 | None:intergenic |
| GAGGGAGCCCTAAAGTGAAT+AGG | 0.470476 | 1.3:+1628191 | None:intergenic |
| GGTTCTTACTTGAGAGCATC+GGG | 0.471713 | 1.3:+1625404 | None:intergenic |
| AGAAGCTGCTCAATAAATTG+AGG | 0.480348 | 1.3:-1625062 | MS.gene27028:CDS |
| ATATGAGATTTCTAAGGAAG+AGG | 0.501956 | 1.3:-1628238 | MS.gene27028:CDS |
| CGCGCGATTGAAGGTCTATG+AGG | 0.509761 | 1.3:-1625468 | MS.gene27028:CDS |
| CTTAGCGCATATGCCTGATC+CGG | 0.515048 | 1.3:+1628406 | None:intergenic |
| GAAGCTGCTCAATAAATTGA+GGG | 0.519049 | 1.3:-1625061 | MS.gene27028:CDS |
| GACGCCCGCCACCACATGCT+CGG | 0.519214 | 1.3:-1628371 | MS.gene27028:CDS |
| ACGGCCGAGCATGTGGTGGC+GGG | 0.522437 | 1.3:+1628367 | None:intergenic |
| AGTGCGCCAAAAGATCTTAG+AGG | 0.534021 | 1.3:+1628172 | None:intergenic |
| TGGTTCTTACTTGAGAGCAT+CGG | 0.539745 | 1.3:+1625403 | None:intergenic |
| GAGAAGCTCCTTTGCGACAA+TGG | 0.544115 | 1.3:+1628337 | None:intergenic |
| TTCTTGTTTATAGGAGCTGG+AGG | 0.546787 | 1.3:-1625124 | MS.gene27028:intron |
| GGACACAAATACTGCTTGCT+CGG | 0.550212 | 1.3:-1625272 | MS.gene27028:CDS |
| ATGAATACTAAACCTTCTCA+TGG | 0.560213 | 1.3:-1628215 | MS.gene27028:CDS |
| GTCGCAAAGGAGCTTCTCAA+TGG | 0.561981 | 1.3:-1628332 | MS.gene27028:CDS |
| AGTTGTCATCAGAGGTTGGA+TGG | 0.565112 | 1.3:-1625247 | MS.gene27028:CDS |
| AGGCAAGACGGCCGAGCATG+TGG | 0.572354 | 1.3:+1628360 | None:intergenic |
| TTGATCTTGTCATATGGAGG+AGG | 0.574582 | 1.3:+1625440 | None:intergenic |
| CTCCATATGACAAGATCAAG+AGG | 0.577162 | 1.3:-1625436 | MS.gene27028:CDS |
| TCTTGCCTCCATTGTCGCAA+AGG | 0.579194 | 1.3:-1628345 | MS.gene27028:CDS |
| TCAGAGGTTGGATGGAACTA+CGG | 0.586349 | 1.3:-1625239 | MS.gene27028:CDS |
| GGAGCTGGAGGATAAGAGGA+AGG | 0.587458 | 1.3:-1625112 | MS.gene27028:CDS |
| GAACTACGGTGGCATCATCA+AGG | 0.590785 | 1.3:-1625225 | MS.gene27028:intron |
| GGACAGTTGTCATCAGAGGT+TGG | 0.592395 | 1.3:-1625251 | MS.gene27028:CDS |
| CTCTTGATCTTGTCATATGG+AGG | 0.593959 | 1.3:+1625437 | None:intergenic |
| GCTCGGACAGTTGTCATCAG+AGG | 0.597789 | 1.3:-1625255 | MS.gene27028:CDS |
| GGAGCTTCTCAATGGTCAGA+AGG | 0.600116 | 1.3:-1628324 | MS.gene27028:CDS |
| GTGCGCCAAAAGATCTTAGA+GGG | 0.602717 | 1.3:+1628173 | None:intergenic |
| CAAGACGGCCGAGCATGTGG+TGG | 0.603581 | 1.3:+1628363 | None:intergenic |
| TTGCGACAATGGAGGCAAGA+CGG | 0.613146 | 1.3:+1628348 | None:intergenic |
| AGGGTGTTGAGACTTCAAAA+GGG | 0.620018 | 1.3:-1625293 | MS.gene27028:CDS |
| GCGCGATTGAAGGTCTATGA+GGG | 0.624683 | 1.3:-1625467 | MS.gene27028:CDS |
| ATATGACAAGATCAAGAGGA+TGG | 0.634497 | 1.3:-1625432 | MS.gene27028:CDS |
| GGAGCAAGGACTTCAAGTTG+GGG | 0.640419 | 1.3:+1625003 | None:intergenic |
| TCTCCACGCTTAGTCTTGTG+TGG | 0.642845 | 1.3:+1625500 | None:intergenic |
| ATACCACACAAGACTAAGCG+TGG | 0.643021 | 1.3:-1625503 | MS.gene27028:CDS |
| AAGCTCCTTTGCGACAATGG+AGG | 0.645821 | 1.3:+1628340 | None:intergenic |
| AGCAAGGACTTCAAGTTGGG+GGG | 0.650449 | 1.3:+1625005 | None:intergenic |
| GATAAGAGGAAGGAACGCGC+AGG | 0.659068 | 1.3:-1625102 | MS.gene27028:CDS |
| GCTTCTCAATGGTCAGAAGG+TGG | 0.662927 | 1.3:-1628321 | MS.gene27028:CDS |
| ACACAAGACTAAGCGTGGAG+AGG | 0.667676 | 1.3:-1625498 | MS.gene27028:CDS |
| AAGTGAATAGGACCATGAGA+AGG | 0.669515 | 1.3:+1628203 | None:intergenic |
| GAGCAAGGACTTCAAGTTGG+GGG | 0.688692 | 1.3:+1625004 | None:intergenic |
| GAAGAAATTTGTGCTTCAGG+TGG | 0.691821 | 1.3:-1628284 | MS.gene27028:CDS |
| GAGGTTGGATGGAACTACGG+TGG | 0.706495 | 1.3:-1625236 | MS.gene27028:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTTATAAATTTATT+AGG | - | chr1.3:1626799-1626818 | MS.gene27028:intron | 0.0% |
| !!! | ATTTTTGTTTAATTTGATAT+TGG | - | chr1.3:1625326-1625345 | MS.gene27028:intron | 10.0% |
| !!! | GTTTTTTTATATGATTTATA+AGG | - | chr1.3:1626866-1626885 | MS.gene27028:intron | 10.0% |
| !!! | TTTCTTAATTAAATTTTGTT+GGG | - | chr1.3:1626706-1626725 | MS.gene27028:intron | 10.0% |
| !!! | TTTTCTTAATTAAATTTTGT+TGG | - | chr1.3:1626705-1626724 | MS.gene27028:intron | 10.0% |
| !!! | TTTTTGTTTAATTTGATATT+GGG | - | chr1.3:1625327-1625346 | MS.gene27028:intron | 10.0% |
| !!! | TTTTTTGATTATTTGATAAT+GGG | - | chr1.3:1626743-1626762 | MS.gene27028:intron | 10.0% |
| !!! | TTTTTTTGATTATTTGATAA+TGG | - | chr1.3:1626742-1626761 | MS.gene27028:intron | 10.0% |
| !! | ATATGATTTATAAGGTTATT+TGG | - | chr1.3:1626874-1626893 | MS.gene27028:intron | 15.0% |
| !! | CTGTAAATTATACAATAAAA+TGG | + | chr1.3:1628023-1628042 | None:intergenic | 15.0% |
| !! | TTTGATTATTAGATTGAATT+GGG | - | chr1.3:1625647-1625666 | MS.gene27028:intron | 15.0% |
| !!! | ATGATTTGTGATTATAAATA+TGG | - | chr1.3:1625772-1625791 | MS.gene27028:intron | 15.0% |
| !!! | TATGTTATTTCTATAACAAA+AGG | + | chr1.3:1626048-1626067 | None:intergenic | 15.0% |
| !!! | TGTATTTGTATTTGTTTTTT+AGG | - | chr1.3:1625482-1625501 | MS.gene27028:CDS | 15.0% |
| !! | AGTTAATAAGTCAATTGAAA+TGG | + | chr1.3:1625800-1625819 | None:intergenic | 20.0% |
| !! | ATAGAAAAAATGTAGATCTT+AGG | - | chr1.3:1627596-1627615 | MS.gene27028:intron | 20.0% |
| !! | ATTTGATAGAATTATGAAGT+TGG | - | chr1.3:1626216-1626235 | MS.gene27028:intron | 20.0% |
| !! | CAATTCTATCAAATAAACAA+AGG | + | chr1.3:1626561-1626580 | None:intergenic | 20.0% |
| !! | GTTTGATTATTAGATTGAAT+TGG | - | chr1.3:1625646-1625665 | MS.gene27028:intron | 20.0% |
| !! | TTTACAAGAACTTATGAAAA+TGG | - | chr1.3:1625856-1625875 | MS.gene27028:intron | 20.0% |
| !! | TTTGAAAGAACTTATGAAAA+CGG | - | chr1.3:1627151-1627170 | MS.gene27028:intron | 20.0% |
| !! | TTTGCTTATATGATTGAATT+GGG | - | chr1.3:1626967-1626986 | MS.gene27028:intron | 20.0% |
| !!! | AAAGTGTTGTTATTTTTTAG+AGG | - | chr1.3:1626596-1626615 | MS.gene27028:intron | 20.0% |
| !!! | AAGTGTTGTTATTTTTTAGA+GGG | - | chr1.3:1626597-1626616 | MS.gene27028:intron | 20.0% |
| !!! | ATGTGTTTTATAAGGTTATT+TGG | - | chr1.3:1625567-1625586 | MS.gene27028:intron | 20.0% |
| !!! | ATTATTAGCATTTTGTCTAT+GGG | - | chr1.3:1625423-1625442 | MS.gene27028:CDS | 20.0% |
| !!! | CTTTTTGTTGTTGAATTAAA+AGG | - | chr1.3:1628049-1628068 | MS.gene27028:intron | 20.0% |
| !!! | GATGTTTAATGTGTTTTATA+AGG | - | chr1.3:1625559-1625578 | MS.gene27028:intron | 20.0% |
| !!! | GTATTTGTTTTTTAGGAATT+TGG | - | chr1.3:1625489-1625508 | MS.gene27028:CDS | 20.0% |
| !!! | GTGATTTTTTTTGTTTTGTT+TGG | - | chr1.3:1628200-1628219 | MS.gene27028:CDS | 20.0% |
| !!! | GTGGTTTTGAATTTTTTAAT+TGG | - | chr1.3:1628255-1628274 | MS.gene27028:CDS | 20.0% |
| !!! | GTTTTGAAGTGATTAATTAA+GGG | - | chr1.3:1626162-1626181 | MS.gene27028:intron | 20.0% |
| !!! | TATTATTAGCATTTTGTCTA+TGG | - | chr1.3:1625422-1625441 | MS.gene27028:CDS | 20.0% |
| !!! | TTAATTGGTTTCTTGTTTAT+AGG | - | chr1.3:1628270-1628289 | MS.gene27028:CDS | 20.0% |
| !!! | TTCAAGTGGTTATTTAATTT+TGG | - | chr1.3:1627746-1627765 | MS.gene27028:intron | 20.0% |
| !!! | TTTGTATTTGTTTAGTTTGA+CGG | - | chr1.3:1625459-1625478 | MS.gene27028:CDS | 20.0% |
| !!! | TTTGTTGATTGGATTATAAT+GGG | - | chr1.3:1625296-1625315 | MS.gene27028:intron | 20.0% |
| !!! | TTTTATTGTGTTTTGTTGAT+TGG | - | chr1.3:1625285-1625304 | MS.gene27028:CDS | 20.0% |
| !!! | TTTTGTTGATTGGATTATAA+TGG | - | chr1.3:1625295-1625314 | MS.gene27028:intron | 20.0% |
| ! | AGATCTATTTATTCAGCATA+TGG | + | chr1.3:1625536-1625555 | None:intergenic | 25.0% |
| ! | ATCTGATAGAATCATAAAGT+TGG | - | chr1.3:1627439-1627458 | MS.gene27028:intron | 25.0% |
| ! | CAAAAAAGAACATTATACGT+GGG | + | chr1.3:1626138-1626157 | None:intergenic | 25.0% |
| ! | GTTTGCTTATATGATTGAAT+TGG | - | chr1.3:1626966-1626985 | MS.gene27028:intron | 25.0% |
| ! | TGAAGTATATGAGATTTCTA+AGG | - | chr1.3:1625159-1625178 | MS.gene27028:intron | 25.0% |
| ! | TGAATGAGTGAATGAAATTA+GGG | - | chr1.3:1628091-1628110 | MS.gene27028:intron | 25.0% |
| ! | TTAGCTTATTGATGTTTGAA+TGG | - | chr1.3:1626358-1626377 | MS.gene27028:intron | 25.0% |
| ! | TTGATTAGGTAGAATGTATT+GGG | - | chr1.3:1626484-1626503 | MS.gene27028:intron | 25.0% |
| ! | TTTGATTAGGTAGAATGTAT+TGG | - | chr1.3:1626483-1626502 | MS.gene27028:intron | 25.0% |
| !! | ACATAGAATGTCTTTTTCTA+TGG | - | chr1.3:1625737-1625756 | MS.gene27028:intron | 25.0% |
| !! | ATTTAGAATGATTAGACTCA+TGG | - | chr1.3:1627536-1627555 | MS.gene27028:intron | 25.0% |
| !! | GAATTTGATCAACAATTTTG+TGG | - | chr1.3:1628236-1628255 | MS.gene27028:CDS | 25.0% |
| !! | GTTTGGACTAGATATAATTT+AGG | - | chr1.3:1626919-1626938 | MS.gene27028:intron | 25.0% |
| !! | TAAAAGTGTAGATAATAGGA+GGG | - | chr1.3:1627635-1627654 | MS.gene27028:intron | 25.0% |
| !! | TATGTAGAATGCTTTCTTTT+GGG | - | chr1.3:1626642-1626661 | MS.gene27028:intron | 25.0% |
| !! | TTATGTAGAATGCTTTCTTT+TGG | - | chr1.3:1626641-1626660 | MS.gene27028:intron | 25.0% |
| !! | TTCGTAAAAGTGTAGATAAT+AGG | - | chr1.3:1627631-1627650 | MS.gene27028:intron | 25.0% |
| !!! | AGAAGTGTTCTTTGTTTATT+TGG | - | chr1.3:1626293-1626312 | MS.gene27028:intron | 25.0% |
| !!! | CTTATTTTCATAAACTCTCT+AGG | - | chr1.3:1627202-1627221 | MS.gene27028:intron | 25.0% |
| !!! | GAAAAGTGTTATTAGAAATG+TGG | - | chr1.3:1626441-1626460 | MS.gene27028:intron | 25.0% |
| !!! | GGTTTTGAAGTGATTAATTA+AGG | - | chr1.3:1626161-1626180 | MS.gene27028:intron | 25.0% |
| !!! | GTATAATGTTCTTTTTTGGA+GGG | - | chr1.3:1626140-1626159 | MS.gene27028:intron | 25.0% |
| !!! | TACGTTATTTCTACAACAAA+AGG | + | chr1.3:1625988-1626007 | None:intergenic | 25.0% |
| !!! | TTGGCTTTGTGATATAATTT+AGG | - | chr1.3:1625599-1625618 | MS.gene27028:intron | 25.0% |
| !!! | TTGTTTTTTAGGAATTTGGT+AGG | - | chr1.3:1625493-1625512 | MS.gene27028:CDS | 25.0% |
| AAACACCAAATTACCTTATG+GGG | + | chr1.3:1626334-1626353 | None:intergenic | 30.0% | |
| ACAAACACCAAATTACCTTA+TGG | + | chr1.3:1626336-1626355 | None:intergenic | 30.0% | |
| ATGAATACTAAACCTTCTCA+TGG | - | chr1.3:1625188-1625207 | MS.gene27028:intron | 30.0% | |
| CAAACACCAAATTACCTTAT+GGG | + | chr1.3:1626335-1626354 | None:intergenic | 30.0% | |
| CCAAAAAAGAACATTATACG+TGG | + | chr1.3:1626139-1626158 | None:intergenic | 30.0% | |
| CTGAATGAGTGAATGAAATT+AGG | - | chr1.3:1628090-1628109 | MS.gene27028:intron | 30.0% | |
| GTATAAAAAAACAGAGCAAG+TGG | + | chr1.3:1625398-1625417 | None:intergenic | 30.0% | |
| GTTGAACGTCTTTGTATATT+TGG | - | chr1.3:1627784-1627803 | MS.gene27028:intron | 30.0% | |
| TAGATCTTAGGATCATAACA+AGG | - | chr1.3:1627608-1627627 | MS.gene27028:intron | 30.0% | |
| TAGTTTATCTAAACATGCCT+AGG | - | chr1.3:1627335-1627354 | MS.gene27028:intron | 30.0% | |
| TTATGAAAATGGCTTATGAC+AGG | - | chr1.3:1625867-1625886 | MS.gene27028:intron | 30.0% | |
| TTGAAGTGATTAATGAATCC+AGG | - | chr1.3:1627384-1627403 | MS.gene27028:intron | 30.0% | |
| TTGAATGTTGTGTTATGTTC+AGG | - | chr1.3:1626260-1626279 | MS.gene27028:intron | 30.0% | |
| TTGAATGTTGTGTTGTGTTA+TGG | - | chr1.3:1627486-1627505 | MS.gene27028:intron | 30.0% | |
| TTTGTCTATGGGATTTCATT+GGG | - | chr1.3:1625434-1625453 | MS.gene27028:CDS | 30.0% | |
| ! | ACAAAACCACAAAACACTTT+TGG | + | chr1.3:1626676-1626695 | None:intergenic | 30.0% |
| ! | AGAATGTCTTTTTCTATGGA+GGG | - | chr1.3:1625741-1625760 | MS.gene27028:intron | 30.0% |
| ! | ATATGAGATTTCTAAGGAAG+AGG | - | chr1.3:1625165-1625184 | MS.gene27028:intron | 30.0% |
| ! | GTAAAAGTGTAGATAATAGG+AGG | - | chr1.3:1627634-1627653 | MS.gene27028:intron | 30.0% |
| ! | TAGAATGTCTTTTTCTATGG+AGG | - | chr1.3:1625740-1625759 | MS.gene27028:intron | 30.0% |
| ! | TTTTGTCTATGGGATTTCAT+TGG | - | chr1.3:1625433-1625452 | MS.gene27028:CDS | 30.0% |
| !! | AACTTTAAAACAATGCATCC+TGG | + | chr1.3:1627405-1627424 | None:intergenic | 30.0% |
| !! | ATTAGGAAGTGTTGATATTG+TGG | - | chr1.3:1626816-1626835 | MS.gene27028:intron | 30.0% |
| !! | GGTTATTTGGTGTTTGTAAT+TGG | - | chr1.3:1625580-1625599 | MS.gene27028:intron | 30.0% |
| !!! | CCACGTATAATGTTCTTTTT+TGG | - | chr1.3:1626136-1626155 | MS.gene27028:intron | 30.0% |
| !!! | CGTATAATGTTCTTTTTTGG+AGG | - | chr1.3:1626139-1626158 | MS.gene27028:intron | 30.0% |
| !!! | GGTTTTTGAGAAGTGTTATT+TGG | - | chr1.3:1627511-1627530 | MS.gene27028:intron | 30.0% |
| !!! | TTTTTTTAGCGCTATTCAAG+TGG | - | chr1.3:1627732-1627751 | MS.gene27028:intron | 30.0% |
| AAAAAGAGGACATTCTACCT+AGG | + | chr1.3:1627355-1627374 | None:intergenic | 35.0% | |
| AACACCAAATTACCTTATGG+GGG | + | chr1.3:1626333-1626352 | None:intergenic | 35.0% | |
| AAGACATTCTACACAATCAC+AGG | + | chr1.3:1627050-1627069 | None:intergenic | 35.0% | |
| AATGTTGTGTTATGTTCAGG+AGG | - | chr1.3:1626263-1626282 | MS.gene27028:intron | 35.0% | |
| AATGTTGTGTTGTGTTATGG+AGG | - | chr1.3:1627489-1627508 | MS.gene27028:intron | 35.0% | |
| AGAAGCTGCTCAATAAATTG+AGG | - | chr1.3:1628341-1628360 | MS.gene27028:CDS | 35.0% | |
| AGACATTCTACACAATCACA+GGG | + | chr1.3:1627049-1627068 | None:intergenic | 35.0% | |
| AGACTCATGGTTGTCAAAAT+CGG | - | chr1.3:1627549-1627568 | MS.gene27028:intron | 35.0% | |
| ATACCCAAACGATCTTTAGT+GGG | + | chr1.3:1627578-1627597 | None:intergenic | 35.0% | |
| ATATGACAAGATCAAGAGGA+TGG | - | chr1.3:1627971-1627990 | MS.gene27028:intron | 35.0% | |
| ATCCTCTTGATCTTGTCATA+TGG | + | chr1.3:1627972-1627991 | None:intergenic | 35.0% | |
| ATGTTGTGTTATGTTCAGGA+GGG | - | chr1.3:1626264-1626283 | MS.gene27028:intron | 35.0% | |
| ATGTTGTGTTGTGTTATGGA+GGG | - | chr1.3:1627490-1627509 | MS.gene27028:intron | 35.0% | |
| ATTAGGTAGAATGTATTGGG+AGG | - | chr1.3:1626487-1626506 | MS.gene27028:intron | 35.0% | |
| GAAGCTGCTCAATAAATTGA+GGG | - | chr1.3:1628342-1628361 | MS.gene27028:CDS | 35.0% | |
| GCTTGATTATGCATGTTGTT+TGG | - | chr1.3:1627095-1627114 | MS.gene27028:intron | 35.0% | |
| TATACCCAAACGATCTTTAG+TGG | + | chr1.3:1627579-1627598 | None:intergenic | 35.0% | |
| TCATGGTCCTATTCACTTTA+GGG | - | chr1.3:1625205-1625224 | MS.gene27028:intron | 35.0% | |
| TGTGAAGAAATTTGTGCTTC+AGG | - | chr1.3:1625116-1625135 | MS.gene27028:intron | 35.0% | |
| TTAGGTAGAATGTATTGGGA+GGG | - | chr1.3:1626488-1626507 | MS.gene27028:intron | 35.0% | |
| TTATGAAAACGGCTTATGAC+AGG | - | chr1.3:1627162-1627181 | MS.gene27028:intron | 35.0% | |
| TTCAAAAACCCTCCAAAAAG+AGG | + | chr1.3:1627369-1627388 | None:intergenic | 35.0% | |
| ! | AGTGATTAATTAAGGGTGCA+TGG | - | chr1.3:1626169-1626188 | MS.gene27028:intron | 35.0% |
| ! | ATGTAGAATGCTGTCTTTTG+AGG | - | chr1.3:1627677-1627696 | MS.gene27028:intron | 35.0% |
| ! | ATGTAGCTGTTGAGTGTTTT+TGG | - | chr1.3:1625685-1625704 | MS.gene27028:intron | 35.0% |
| ! | CTGTTTTCATTAGCTACTCT+TGG | + | chr1.3:1625928-1625947 | None:intergenic | 35.0% |
| ! | TAGAATGTCCTCTTTTTGGA+GGG | - | chr1.3:1627358-1627377 | MS.gene27028:intron | 35.0% |
| ! | TAGGTAGAATGTCCTCTTTT+TGG | - | chr1.3:1627354-1627373 | MS.gene27028:intron | 35.0% |
| ! | TGTAGAATGCTGTCTTTTGA+GGG | - | chr1.3:1627678-1627697 | MS.gene27028:intron | 35.0% |
| !! | TAGAATGCTTTCTTTTGGGA+GGG | - | chr1.3:1626646-1626665 | MS.gene27028:intron | 35.0% |
| !! | TTGACGAGTGTTGTTTGATT+AGG | - | chr1.3:1626470-1626489 | MS.gene27028:intron | 35.0% |
| !! | TTGCTGTTGAGTGTTTTTCA+AGG | - | chr1.3:1627009-1627028 | MS.gene27028:intron | 35.0% |
| !! | TTTGGTGTTTGTAATTGGCT+TGG | - | chr1.3:1625585-1625604 | MS.gene27028:intron | 35.0% |
| AAGTGAATAGGACCATGAGA+AGG | + | chr1.3:1625203-1625222 | None:intergenic | 40.0% | |
| ATGATACCCACAGATGCTAT+AGG | - | chr1.3:1626085-1626104 | MS.gene27028:intron | 40.0% | |
| CACAAGATCTAGACAACACA+AGG | + | chr1.3:1626845-1626864 | None:intergenic | 40.0% | |
| CTCATGGTCCTATTCACTTT+AGG | - | chr1.3:1625204-1625223 | MS.gene27028:intron | 40.0% | |
| CTCCATATGACAAGATCAAG+AGG | - | chr1.3:1627967-1627986 | MS.gene27028:intron | 40.0% | |
| CTCTTGATCTTGTCATATGG+AGG | + | chr1.3:1627969-1627988 | None:intergenic | 40.0% | |
| GAAGAAATTTGTGCTTCAGG+TGG | - | chr1.3:1625119-1625138 | MS.gene27028:intron | 40.0% | |
| GACTCATGGTTGTCAAAATC+GGG | - | chr1.3:1627550-1627569 | MS.gene27028:intron | 40.0% | |
| GATCCCACTAAAGATCGTTT+GGG | - | chr1.3:1627572-1627591 | MS.gene27028:intron | 40.0% | |
| GATTCCCCCATAAGGTAATT+TGG | - | chr1.3:1626326-1626345 | MS.gene27028:intron | 40.0% | |
| TTGATCTTGTCATATGGAGG+AGG | + | chr1.3:1627966-1627985 | None:intergenic | 40.0% | |
| ! | GGTTTCTTGTTTATAGGAGC+TGG | - | chr1.3:1628276-1628295 | MS.gene27028:CDS | 40.0% |
| ! | GTAGAATGCTTTCTTTTGGG+AGG | - | chr1.3:1626645-1626664 | MS.gene27028:intron | 40.0% |
| ! | GTAGAATGTCCTCTTTTTGG+AGG | - | chr1.3:1627357-1627376 | MS.gene27028:intron | 40.0% |
| ! | TGGTTCTTACTTGAGAGCAT+CGG | + | chr1.3:1628003-1628022 | None:intergenic | 40.0% |
| ! | TGTTGTTAAGTGTTGCGTGA+TGG | - | chr1.3:1627834-1627853 | MS.gene27028:intron | 40.0% |
| ! | TTCTTGTTTATAGGAGCTGG+AGG | - | chr1.3:1628279-1628298 | MS.gene27028:CDS | 40.0% |
| !! | AGGGTGTTGAGACTTCAAAA+GGG | - | chr1.3:1628110-1628129 | MS.gene27028:intron | 40.0% |
| !! | GTAATTGGCTTGGTGATGTT+TGG | - | chr1.3:1626902-1626921 | MS.gene27028:intron | 40.0% |
| !! | TAGGGTGTTGAGACTTCAAA+AGG | - | chr1.3:1628109-1628128 | MS.gene27028:intron | 40.0% |
| !! | TCATTACTGATTCCCCCATA+AGG | - | chr1.3:1626318-1626337 | MS.gene27028:intron | 40.0% |
| !!! | AGCTGTTGAGTGTTTTTGGA+GGG | - | chr1.3:1625689-1625708 | MS.gene27028:intron | 40.0% |
| !!! | GGTTTGCCAAAAGTGTTTTG+TGG | - | chr1.3:1626667-1626686 | MS.gene27028:intron | 40.0% |
| !!! | TAGCTGTTGAGTGTTTTTGG+AGG | - | chr1.3:1625688-1625707 | MS.gene27028:intron | 40.0% |
| AGTGCGCCAAAAGATCTTAG+AGG | + | chr1.3:1625234-1625253 | None:intergenic | 45.0% | |
| AGTTGTCATCAGAGGTTGGA+TGG | - | chr1.3:1628156-1628175 | MS.gene27028:intron | 45.0% | |
| ATACCACACAAGACTAAGCG+TGG | - | chr1.3:1627900-1627919 | MS.gene27028:intron | 45.0% | |
| GGACACAAATACTGCTTGCT+CGG | - | chr1.3:1628131-1628150 | MS.gene27028:intron | 45.0% | |
| GGATCCCACTAAAGATCGTT+TGG | - | chr1.3:1627571-1627590 | MS.gene27028:intron | 45.0% | |
| GTGCGCCAAAAGATCTTAGA+GGG | + | chr1.3:1625233-1625252 | None:intergenic | 45.0% | |
| TATAGGAGCTGGAGGATAAG+AGG | - | chr1.3:1628287-1628306 | MS.gene27028:CDS | 45.0% | |
| TCAGAGGTTGGATGGAACTA+CGG | - | chr1.3:1628164-1628183 | MS.gene27028:CDS | 45.0% | |
| TTGCGACCTATAGCATCTGT+GGG | + | chr1.3:1626094-1626113 | None:intergenic | 45.0% | |
| TTTGCGACCTATAGCATCTG+TGG | + | chr1.3:1626095-1626114 | None:intergenic | 45.0% | |
| !! | GGTTCTTACTTGAGAGCATC+GGG | + | chr1.3:1628002-1628021 | None:intergenic | 45.0% |
| AAGCTCCTTTGCGACAATGG+AGG | + | chr1.3:1625066-1625085 | None:intergenic | 50.0% | |
| ACACAAGACTAAGCGTGGAG+AGG | - | chr1.3:1627905-1627924 | MS.gene27028:intron | 50.0% | |
| CTTAGCGCATATGCCTGATC+CGG | + | chr1.3:1625000-1625019 | None:intergenic | 50.0% | |
| GAACTACGGTGGCATCATCA+AGG | - | chr1.3:1628178-1628197 | MS.gene27028:CDS | 50.0% | |
| GAGAAGCTCCTTTGCGACAA+TGG | + | chr1.3:1625069-1625088 | None:intergenic | 50.0% | |
| GAGGGAGCCCTAAAGTGAAT+AGG | + | chr1.3:1625215-1625234 | None:intergenic | 50.0% | |
| GCGCGATTGAAGGTCTATGA+GGG | - | chr1.3:1627936-1627955 | MS.gene27028:intron | 50.0% | |
| GCTTCTCAATGGTCAGAAGG+TGG | - | chr1.3:1625082-1625101 | MS.gene27028:CDS | 50.0% | |
| GGACAGTTGTCATCAGAGGT+TGG | - | chr1.3:1628152-1628171 | MS.gene27028:intron | 50.0% | |
| GGAGCTTCTCAATGGTCAGA+AGG | - | chr1.3:1625079-1625098 | MS.gene27028:CDS | 50.0% | |
| GTCGCAAAGGAGCTTCTCAA+TGG | - | chr1.3:1625071-1625090 | MS.gene27028:CDS | 50.0% | |
| TCTTGCCTCCATTGTCGCAA+AGG | - | chr1.3:1625058-1625077 | MS.gene27028:CDS | 50.0% | |
| TTGCGACAATGGAGGCAAGA+CGG | + | chr1.3:1625058-1625077 | None:intergenic | 50.0% | |
| ! | ATCTTTTGGCGCACTGTTCG+TGG | - | chr1.3:1625239-1625258 | MS.gene27028:CDS | 50.0% |
| ! | GGGAGCAAGGACTTCAAGTT+GGG | + | chr1.3:1628404-1628423 | None:intergenic | 50.0% |
| ! | TCTTTTGGCGCACTGTTCGT+GGG | - | chr1.3:1625240-1625259 | MS.gene27028:CDS | 50.0% |
| !! | AGCAAGGACTTCAAGTTGGG+GGG | + | chr1.3:1628401-1628420 | None:intergenic | 50.0% |
| !! | GAGCAAGGACTTCAAGTTGG+GGG | + | chr1.3:1628402-1628421 | None:intergenic | 50.0% |
| !! | GGAGCAAGGACTTCAAGTTG+GGG | + | chr1.3:1628403-1628422 | None:intergenic | 50.0% |
| !! | TCTCCACGCTTAGTCTTGTG+TGG | + | chr1.3:1627906-1627925 | None:intergenic | 50.0% |
| !!! | GGGCTCCCTCTAAGATCTTT+TGG | - | chr1.3:1625225-1625244 | MS.gene27028:intron | 50.0% |
| CGCGCGATTGAAGGTCTATG+AGG | - | chr1.3:1627935-1627954 | MS.gene27028:intron | 55.0% | |
| CGGGAGCAAGGACTTCAAGT+TGG | + | chr1.3:1628405-1628424 | None:intergenic | 55.0% | |
| GAGGTTGGATGGAACTACGG+TGG | - | chr1.3:1628167-1628186 | MS.gene27028:CDS | 55.0% | |
| GATAAGAGGAAGGAACGCGC+AGG | - | chr1.3:1628301-1628320 | MS.gene27028:CDS | 55.0% | |
| GCTCGGACAGTTGTCATCAG+AGG | - | chr1.3:1628148-1628167 | MS.gene27028:intron | 55.0% | |
| GGAGCTGGAGGATAAGAGGA+AGG | - | chr1.3:1628291-1628310 | MS.gene27028:CDS | 55.0% | |
| GAGGAAGGAACGCGCAGGTT+TGG | - | chr1.3:1628306-1628325 | MS.gene27028:CDS | 60.0% | |
| AGGCAAGACGGCCGAGCATG+TGG | + | chr1.3:1625046-1625065 | None:intergenic | 65.0% | |
| CAAGACGGCCGAGCATGTGG+TGG | + | chr1.3:1625043-1625062 | None:intergenic | 65.0% | |
| GGCTGCACTCGCGCGATTGA+AGG | - | chr1.3:1627926-1627945 | MS.gene27028:intron | 65.0% | |
| ACGGCCGAGCATGTGGTGGC+GGG | + | chr1.3:1625039-1625058 | None:intergenic | 70.0% | |
| GACGCCCGCCACCACATGCT+CGG | - | chr1.3:1625032-1625051 | MS.gene27028:CDS | 70.0% | |
| GACGGCCGAGCATGTGGTGG+CGG | + | chr1.3:1625040-1625059 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 1624990 | 1628435 | 1624990 | ID=MS.gene27028 |
| chr1.3 | mRNA | 1624990 | 1628435 | 1624990 | ID=MS.gene27028.t1;Parent=MS.gene27028 |
| chr1.3 | exon | 1628164 | 1628435 | 1628164 | ID=MS.gene27028.t1.exon1;Parent=MS.gene27028.t1 |
| chr1.3 | CDS | 1628164 | 1628435 | 1628164 | ID=cds.MS.gene27028.t1;Parent=MS.gene27028.t1 |
| chr1.3 | exon | 1625413 | 1625529 | 1625413 | ID=MS.gene27028.t1.exon2;Parent=MS.gene27028.t1 |
| chr1.3 | CDS | 1625413 | 1625529 | 1625413 | ID=cds.MS.gene27028.t1;Parent=MS.gene27028.t1 |
| chr1.3 | exon | 1625226 | 1625313 | 1625226 | ID=MS.gene27028.t1.exon3;Parent=MS.gene27028.t1 |
| chr1.3 | CDS | 1625226 | 1625313 | 1625226 | ID=cds.MS.gene27028.t1;Parent=MS.gene27028.t1 |
| chr1.3 | exon | 1624990 | 1625133 | 1624990 | ID=MS.gene27028.t1.exon4;Parent=MS.gene27028.t1 |
| chr1.3 | CDS | 1624990 | 1625133 | 1624990 | ID=cds.MS.gene27028.t1;Parent=MS.gene27028.t1 |
| Gene Sequence |
| Protein sequence |
