Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26567.t1 | XP_003608067.1 | 96.9 | 160 | 2 | 1 | 1 | 157 | 1 | 160 | 3.10E-77 | 297.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26567.t1 | A8YXY3 | 35.6 | 135 | 84 | 3 | 19 | 152 | 28 | 160 | 1.8e-17 | 90.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26567.t1 | G7JNL6 | 96.9 | 160 | 2 | 1 | 1 | 157 | 1 | 160 | 2.2e-77 | 297.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene26567 | 0.814759 | 1.31E-51 | -1.69E-46 |
| MS.gene049208 | MS.gene26567 | 0.807395 | 5.16E-50 | -1.69E-46 |
| MS.gene049341 | MS.gene26567 | 0.803345 | 3.64E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene26567 | 0.821167 | 4.66E-53 | -1.69E-46 |
| MS.gene050384 | MS.gene26567 | 0.816903 | 4.35E-52 | -1.69E-46 |
| MS.gene050386 | MS.gene26567 | 0.822299 | 2.55E-53 | -1.69E-46 |
| MS.gene050437 | MS.gene26567 | 0.801613 | 8.29E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene26567 | 0.839665 | 1.38E-57 | -1.69E-46 |
| MS.gene050762 | MS.gene26567 | 0.803178 | 3.95E-49 | -1.69E-46 |
| MS.gene050763 | MS.gene26567 | 0.802139 | 6.46E-49 | -1.69E-46 |
| MS.gene050780 | MS.gene26567 | 0.827044 | 1.94E-54 | -1.69E-46 |
| MS.gene050807 | MS.gene26567 | 0.8222 | 2.69E-53 | -1.69E-46 |
| MS.gene050838 | MS.gene26567 | 0.837482 | 5.06E-57 | -1.69E-46 |
| MS.gene051063 | MS.gene26567 | 0.810269 | 1.25E-50 | -1.69E-46 |
| MS.gene051102 | MS.gene26567 | 0.837963 | 3.81E-57 | -1.69E-46 |
| MS.gene051245 | MS.gene26567 | 0.802298 | 6.00E-49 | -1.69E-46 |
| MS.gene051328 | MS.gene26567 | 0.805338 | 1.40E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene26567 | 0.833957 | 3.96E-56 | -1.69E-46 |
| MS.gene051577 | MS.gene26567 | 0.805812 | 1.11E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene26567 | 0.80118 | 1.02E-48 | -1.69E-46 |
| MS.gene051756 | MS.gene26567 | 0.809789 | 1.59E-50 | -1.69E-46 |
| MS.gene051757 | MS.gene26567 | 0.837137 | 6.21E-57 | -1.69E-46 |
| MS.gene051789 | MS.gene26567 | 0.822613 | 2.16E-53 | -1.69E-46 |
| MS.gene051975 | MS.gene26567 | 0.80256 | 5.29E-49 | -1.69E-46 |
| MS.gene052202 | MS.gene26567 | 0.805882 | 1.08E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene26567 | 0.816658 | 4.94E-52 | -1.69E-46 |
| MS.gene052323 | MS.gene26567 | 0.802305 | 5.98E-49 | -1.69E-46 |
| MS.gene052335 | MS.gene26567 | 0.828291 | 9.76E-55 | -1.69E-46 |
| MS.gene052397 | MS.gene26567 | 0.80195 | 7.07E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene26567 | 0.803025 | 4.24E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene26567 | 0.826119 | 3.23E-54 | -1.69E-46 |
| MS.gene052665 | MS.gene26567 | 0.818552 | 1.85E-52 | -1.69E-46 |
| MS.gene052856 | MS.gene26567 | 0.804224 | 2.39E-49 | -1.69E-46 |
| MS.gene052896 | MS.gene26567 | 0.808915 | 2.45E-50 | -1.69E-46 |
| MS.gene053563 | MS.gene26567 | 0.8086 | 2.86E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene26567 | 0.819671 | 1.03E-52 | -1.69E-46 |
| MS.gene05462 | MS.gene26567 | 0.812514 | 4.08E-51 | -1.69E-46 |
| MS.gene055311 | MS.gene26567 | 0.835195 | 1.93E-56 | -1.69E-46 |
| MS.gene055313 | MS.gene26567 | 0.839331 | 1.69E-57 | -1.69E-46 |
| MS.gene055314 | MS.gene26567 | 0.82148 | 3.95E-53 | -1.69E-46 |
| MS.gene055512 | MS.gene26567 | 0.811621 | 6.39E-51 | -1.69E-46 |
| MS.gene056181 | MS.gene26567 | 0.819943 | 8.90E-53 | -1.69E-46 |
| MS.gene056432 | MS.gene26567 | 0.82355 | 1.30E-53 | -1.69E-46 |
| MS.gene056760 | MS.gene26567 | 0.853201 | 2.79E-61 | -1.69E-46 |
| MS.gene056787 | MS.gene26567 | 0.800124 | 1.67E-48 | -1.69E-46 |
| MS.gene057057 | MS.gene26567 | 0.819464 | 1.15E-52 | -1.69E-46 |
| MS.gene057140 | MS.gene26567 | 0.80219 | 6.31E-49 | -1.69E-46 |
| MS.gene057234 | MS.gene26567 | 0.821098 | 4.84E-53 | -1.69E-46 |
| MS.gene057360 | MS.gene26567 | 0.801603 | 8.33E-49 | -1.69E-46 |
| MS.gene058055 | MS.gene26567 | 0.807085 | 6.00E-50 | -1.69E-46 |
| MS.gene05809 | MS.gene26567 | 0.800411 | 1.46E-48 | -1.69E-46 |
| MS.gene058182 | MS.gene26567 | 0.823094 | 1.67E-53 | -1.69E-46 |
| MS.gene058638 | MS.gene26567 | 0.819673 | 1.03E-52 | -1.69E-46 |
| MS.gene058639 | MS.gene26567 | 0.82914 | 6.08E-55 | -1.69E-46 |
| MS.gene058758 | MS.gene26567 | 0.830279 | 3.21E-55 | -1.69E-46 |
| MS.gene058852 | MS.gene26567 | 0.808413 | 3.14E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene26567 | 0.859517 | 3.92E-63 | -1.69E-46 |
| MS.gene058982 | MS.gene26567 | 0.815043 | 1.13E-51 | -1.69E-46 |
| MS.gene059171 | MS.gene26567 | 0.860176 | 2.48E-63 | -1.69E-46 |
| MS.gene059713 | MS.gene26567 | 0.838654 | 2.53E-57 | -1.69E-46 |
| MS.gene059725 | MS.gene26567 | 0.802764 | 4.81E-49 | -1.69E-46 |
| MS.gene05978 | MS.gene26567 | 0.801613 | 8.29E-49 | -1.69E-46 |
| MS.gene059965 | MS.gene26567 | 0.818056 | 2.39E-52 | -1.69E-46 |
| MS.gene06001 | MS.gene26567 | 0.818083 | 2.36E-52 | -1.69E-46 |
| MS.gene060637 | MS.gene26567 | 0.827963 | 1.17E-54 | -1.69E-46 |
| MS.gene061006 | MS.gene26567 | 0.820155 | 7.96E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26567.t1 | MTR_4g087310 | 97.500 | 160 | 1 | 1 | 1 | 157 | 1 | 160 | 2.72e-112 | 315 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26567.t1 | AT1G05720 | 72.611 | 157 | 42 | 1 | 1 | 156 | 6 | 162 | 1.18e-87 | 253 |
Find 35 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACATACTCTGGAGCATTAT+TGG | 0.207252 | 4.1:+22837956 | MS.gene26567:CDS |
| ACTCTTGCAGAATTGATAAT+TGG | 0.219661 | 4.1:+22838736 | MS.gene26567:intron |
| GAACTTTAACTGATGGAAAC+TGG | 0.345126 | 4.1:-22838043 | None:intergenic |
| TCAATAAAGCCAACAACTTC+AGG | 0.346370 | 4.1:-22838008 | None:intergenic |
| ACCTGATTGTTTCCTTATGT+TGG | 0.348246 | 4.1:-22838115 | None:intergenic |
| TCCACCAAAGTTAATTATGC+TGG | 0.415115 | 4.1:+22838082 | MS.gene26567:CDS |
| TACCTTGGTAGTGGCATCAT+TGG | 0.416461 | 4.1:-22836709 | None:intergenic |
| TCTGTTTCACGGTGCTTCAT+CGG | 0.436576 | 4.1:+22836446 | MS.gene26567:CDS |
| TGCGAGAATCTCGGTTTCAC+CGG | 0.449146 | 4.1:+22836489 | MS.gene26567:CDS |
| TTATCCAGCATAATTAACTT+TGG | 0.453562 | 4.1:-22838086 | None:intergenic |
| TCCAGCATAATTAACTTTGG+TGG | 0.454464 | 4.1:-22838083 | None:intergenic |
| GGTGGTTGTGGTGGTGGTGT+TGG | 0.461002 | 4.1:+22836422 | MS.gene26567:CDS |
| GGATAATGCGGGCCAACATA+AGG | 0.461211 | 4.1:+22838103 | MS.gene26567:CDS |
| ATCAGAGCACAAAGCGAGTC+CGG | 0.462984 | 4.1:-22836508 | None:intergenic |
| CGTTGCGGTGGTTGTGGTGG+TGG | 0.482660 | 4.1:+22836416 | MS.gene26567:CDS |
| GTGGTGTTGGCTCTGTTTCA+CGG | 0.484427 | 4.1:+22836435 | MS.gene26567:CDS |
| ACCTTTGTCTTTGACATACT+CGG | 0.488519 | 4.1:-22836544 | None:intergenic |
| GAAAGTCGTTGCGGTGGTTG+TGG | 0.489350 | 4.1:+22836410 | MS.gene26567:CDS |
| ACATATTGAACTTTAACTGA+TGG | 0.491289 | 4.1:-22838050 | None:intergenic |
| GTTAATTATGCTGGATAATG+CGG | 0.493031 | 4.1:+22838091 | MS.gene26567:CDS |
| TAATTGTAGATTACATACTC+TGG | 0.513437 | 4.1:+22837945 | MS.gene26567:intron |
| CAGAGAGAAGGTGAAACCTT+CGG | 0.521725 | 4.1:+22838785 | MS.gene26567:CDS |
| TCAAGAGAATGCGAGAATCT+CGG | 0.542359 | 4.1:+22836480 | MS.gene26567:CDS |
| GCCAACATAAGGAAACAATC+AGG | 0.546718 | 4.1:+22838114 | MS.gene26567:CDS |
| AATGGATCATACCTTGGTAG+TGG | 0.566233 | 4.1:-22836718 | None:intergenic |
| TTAATTATGCTGGATAATGC+GGG | 0.581451 | 4.1:+22838092 | MS.gene26567:CDS |
| TCCGAGTATGTCAAAGACAA+AGG | 0.585919 | 4.1:+22836543 | MS.gene26567:CDS |
| ACTTCTCAAACAGCTGCCGA+AGG | 0.598065 | 4.1:-22838801 | None:intergenic |
| AGTCGTTGCGGTGGTTGTGG+TGG | 0.613012 | 4.1:+22836413 | MS.gene26567:CDS |
| AGATTGTTTGAAATGTTGCA+CGG | 0.615839 | 4.1:+22836680 | MS.gene26567:CDS |
| CATTATTGGAAGTTTGCATG+AGG | 0.621897 | 4.1:+22837970 | MS.gene26567:CDS |
| ACTGCAGTATCTCAGAGAGA+AGG | 0.645807 | 4.1:+22838773 | MS.gene26567:CDS |
| CTCCAATGATGCCACTACCA+AGG | 0.663891 | 4.1:+22836707 | MS.gene26567:CDS |
| AATGAAGAAAGTCGTTGCGG+TGG | 0.675037 | 4.1:+22836404 | None:intergenic |
| AGAAATGAAGAAAGTCGTTG+CGG | 0.691962 | 4.1:+22836401 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATACTAAGCTAAAAATT+TGG | + | chr4.1:22836641-22836660 | MS.gene26567:intron | 15.0% |
| !! | CAATTAGAGTAAAAAATTAA+TGG | - | chr4.1:22836906-22836925 | None:intergenic | 15.0% |
| !! | ATTTCTATAATTATCACCAT+TGG | - | chr4.1:22837028-22837047 | None:intergenic | 20.0% |
| !! | CCATAAAAAAAAACTCTAAA+TGG | - | chr4.1:22838492-22838511 | None:intergenic | 20.0% |
| !! | TAATTACAATAATGTTGCAT+GGG | + | chr4.1:22837434-22837453 | MS.gene26567:intron | 20.0% |
| !! | TCCAAAAACTAAAATTGATT+AGG | - | chr4.1:22836605-22836624 | None:intergenic | 20.0% |
| !! | TTAATTACAATAATGTTGCA+TGG | + | chr4.1:22837433-22837452 | MS.gene26567:intron | 20.0% |
| !!! | ATCAATTTTAGTTTTTGGAT+TGG | + | chr4.1:22836606-22836625 | MS.gene26567:intron | 20.0% |
| !!! | CCATTTAGAGTTTTTTTTTA+TGG | + | chr4.1:22838489-22838508 | MS.gene26567:intron | 20.0% |
| !!! | TCCTAATCAATTTTAGTTTT+TGG | + | chr4.1:22836601-22836620 | MS.gene26567:intron | 20.0% |
| ! | AAAATATAAGCACCTTCAAT+GGG | + | chr4.1:22836824-22836843 | MS.gene26567:intron | 25.0% |
| ! | AAATCTTGTAAAACAGCTAT+TGG | + | chr4.1:22838445-22838464 | MS.gene26567:intron | 25.0% |
| ! | AATTACAATAATGTTGCATG+GGG | + | chr4.1:22837435-22837454 | MS.gene26567:intron | 25.0% |
| ! | ACATATTGAACTTTAACTGA+TGG | - | chr4.1:22838053-22838072 | None:intergenic | 25.0% |
| ! | ACTTACCAAACATATTGTTA+AGG | + | chr4.1:22836956-22836975 | MS.gene26567:intron | 25.0% |
| ! | ATTACCAACAATAATAGCAT+TGG | + | chr4.1:22837506-22837525 | MS.gene26567:intron | 25.0% |
| ! | TAAAAATTTGGTTGCAGAAT+TGG | + | chr4.1:22836653-22836672 | MS.gene26567:intron | 25.0% |
| ! | TAAAATATAAGCACCTTCAA+TGG | + | chr4.1:22836823-22836842 | MS.gene26567:intron | 25.0% |
| ! | TAATTGTAGATTACATACTC+TGG | + | chr4.1:22837945-22837964 | MS.gene26567:intron | 25.0% |
| ! | TACATCATCACTTAAACTTA+AGG | - | chr4.1:22836805-22836824 | None:intergenic | 25.0% |
| ! | TGCTTCAAAACTTTGATATT+GGG | - | chr4.1:22837798-22837817 | None:intergenic | 25.0% |
| ! | TTATCCAGCATAATTAACTT+TGG | - | chr4.1:22838089-22838108 | None:intergenic | 25.0% |
| ! | TTGCTTCAAAACTTTGATAT+TGG | - | chr4.1:22837799-22837818 | None:intergenic | 25.0% |
| ! | TTTCAAATTATTAGCTGTGT+CGG | + | chr4.1:22837204-22837223 | MS.gene26567:intron | 25.0% |
| !! | CATGATTTTCAATCTATTTC+TGG | + | chr4.1:22837559-22837578 | MS.gene26567:intron | 25.0% |
| !! | TTCAAGTTCATACTTATTTC+TGG | - | chr4.1:22838534-22838553 | None:intergenic | 25.0% |
| !!! | AGTTTTTTTTTATGGTTGCA+TGG | + | chr4.1:22838497-22838516 | MS.gene26567:intron | 25.0% |
| !!! | TGGTTTTCAAGAATTTTCAA+AGG | + | chr4.1:22837579-22837598 | MS.gene26567:intron | 25.0% |
| !!! | TTGGTTTTAAATTGATCTCA+AGG | + | chr4.1:22838181-22838200 | MS.gene26567:intron | 25.0% |
| !!! | TTTTGGATTGGATTTTTGTT+AGG | + | chr4.1:22836618-22836637 | MS.gene26567:intron | 25.0% |
| AAATATAAGCACCTTCAATG+GGG | + | chr4.1:22836825-22836844 | MS.gene26567:intron | 30.0% | |
| AATCAATAACACTGTGCTTA+TGG | + | chr4.1:22838374-22838393 | MS.gene26567:intron | 30.0% | |
| ATAACTATCGTCCAAAAACT+GGG | - | chr4.1:22837911-22837930 | None:intergenic | 30.0% | |
| ATCAAACATTGAGGTAAAGT+TGG | - | chr4.1:22837768-22837787 | None:intergenic | 30.0% | |
| ATCACTTAAACTTAAGGCAA+CGG | - | chr4.1:22836799-22836818 | None:intergenic | 30.0% | |
| ATTACAATAATGTTGCATGG+GGG | + | chr4.1:22837436-22837455 | MS.gene26567:intron | 30.0% | |
| CCAATATGTAATGAAGGAAA+TGG | - | chr4.1:22837636-22837655 | None:intergenic | 30.0% | |
| CCATTTCCTTCATTACATAT+TGG | + | chr4.1:22837633-22837652 | MS.gene26567:intron | 30.0% | |
| CTATCTCCAATATGTAATGA+AGG | - | chr4.1:22837642-22837661 | None:intergenic | 30.0% | |
| CTTCAAAGTAATGTATACAG+TGG | - | chr4.1:22836879-22836898 | None:intergenic | 30.0% | |
| CTTCATTACATATTGGAGAT+AGG | + | chr4.1:22837640-22837659 | MS.gene26567:intron | 30.0% | |
| CTTGTGGTTTATAGTTAGTT+TGG | + | chr4.1:22838162-22838181 | MS.gene26567:intron | 30.0% | |
| GAAATTAGAGTTAGCGAAAA+TGG | - | chr4.1:22836739-22836758 | None:intergenic | 30.0% | |
| GAATGCTTTACCAACTAATT+GGG | - | chr4.1:22838344-22838363 | None:intergenic | 30.0% | |
| GTTAATTATGCTGGATAATG+CGG | + | chr4.1:22838091-22838110 | MS.gene26567:CDS | 30.0% | |
| TAACTATAAACCACAAGAAC+AGG | - | chr4.1:22838159-22838178 | None:intergenic | 30.0% | |
| TAGGAAATCATGCGAAAATA+AGG | + | chr4.1:22837659-22837678 | MS.gene26567:intron | 30.0% | |
| TATAACTATCGTCCAAAAAC+TGG | - | chr4.1:22837912-22837931 | None:intergenic | 30.0% | |
| TGAATGCTTTACCAACTAAT+TGG | - | chr4.1:22838345-22838364 | None:intergenic | 30.0% | |
| TTAATTATGCTGGATAATGC+GGG | + | chr4.1:22838092-22838111 | MS.gene26567:CDS | 30.0% | |
| TTCAGTGTAATTACAAGTGT+CGG | - | chr4.1:22837173-22837192 | None:intergenic | 30.0% | |
| TTCGTCCTTAACAATATGTT+TGG | - | chr4.1:22836964-22836983 | None:intergenic | 30.0% | |
| TTGTTAAGGACGAATTACTT+CGG | + | chr4.1:22836970-22836989 | MS.gene26567:intron | 30.0% | |
| ! | AACTCTAATTTCGATTCGAT+AGG | + | chr4.1:22836747-22836766 | MS.gene26567:intron | 30.0% |
| ! | ACTCTTGCAGAATTGATAAT+TGG | + | chr4.1:22838736-22838755 | MS.gene26567:intron | 30.0% |
| ! | AGATTGTTTGAAATGTTGCA+CGG | + | chr4.1:22836680-22836699 | MS.gene26567:CDS | 30.0% |
| ! | ATTTTCAAAGGAAGTGATGA+AGG | + | chr4.1:22837591-22837610 | MS.gene26567:intron | 30.0% |
| !!! | TTTTGAAGCAACGAAATATC+AGG | + | chr4.1:22837808-22837827 | MS.gene26567:intron | 30.0% |
| ACAGCCAATGCTATTATTGT+TGG | - | chr4.1:22837513-22837532 | None:intergenic | 35.0% | |
| ACCTGATTGTTTCCTTATGT+TGG | - | chr4.1:22838118-22838137 | None:intergenic | 35.0% | |
| ACCTTTGTCTTTGACATACT+CGG | - | chr4.1:22836547-22836566 | None:intergenic | 35.0% | |
| ATGGTAACAACATGATTGTG+TGG | - | chr4.1:22837617-22837636 | None:intergenic | 35.0% | |
| ATTCGTTAGTGACATGCATT+TGG | + | chr4.1:22837046-22837065 | MS.gene26567:intron | 35.0% | |
| CATTATTGGAAGTTTGCATG+AGG | + | chr4.1:22837970-22837989 | MS.gene26567:CDS | 35.0% | |
| GAACTTTAACTGATGGAAAC+TGG | - | chr4.1:22838046-22838065 | None:intergenic | 35.0% | |
| TAAACTTAAGGCAACGGTAA+TGG | - | chr4.1:22836793-22836812 | None:intergenic | 35.0% | |
| TAACACAATTCTGCTAATGC+TGG | + | chr4.1:22838279-22838298 | MS.gene26567:intron | 35.0% | |
| TAACTATCGTCCAAAAACTG+GGG | - | chr4.1:22837910-22837929 | None:intergenic | 35.0% | |
| TCAATAAAGCCAACAACTTC+AGG | - | chr4.1:22838011-22838030 | None:intergenic | 35.0% | |
| TCCACCAAAGTTAATTATGC+TGG | + | chr4.1:22838082-22838101 | MS.gene26567:CDS | 35.0% | |
| TCCACTTAAGCCATCTATAA+CGG | - | chr4.1:22836854-22836873 | None:intergenic | 35.0% | |
| TCCAGCATAATTAACTTTGG+TGG | - | chr4.1:22838086-22838105 | None:intergenic | 35.0% | |
| TTGCATTTGTCCCAATTAGT+TGG | + | chr4.1:22838331-22838350 | MS.gene26567:intron | 35.0% | |
| ! | ACATTGAGGTAAAGTTGGTT+AGG | - | chr4.1:22837763-22837782 | None:intergenic | 35.0% |
| ! | ATTGAGGTAAAGTTGGTTAG+GGG | - | chr4.1:22837761-22837780 | None:intergenic | 35.0% |
| ! | CATTGAGGTAAAGTTGGTTA+GGG | - | chr4.1:22837762-22837781 | None:intergenic | 35.0% |
| ! | CATTTGGAACTTATGAGTTC+TGG | + | chr4.1:22837062-22837081 | MS.gene26567:intron | 35.0% |
| ! | GTTTTCTATCCTGAAGTTGT+TGG | + | chr4.1:22837999-22838018 | MS.gene26567:CDS | 35.0% |
| !! | ATAAGGTTGGTTTAGTGGTT+GGG | + | chr4.1:22837462-22837481 | MS.gene26567:intron | 35.0% |
| !! | GGAATATAAGGTTGGTTTAG+TGG | + | chr4.1:22837457-22837476 | MS.gene26567:intron | 35.0% |
| !! | TACATACTCTGGAGCATTAT+TGG | + | chr4.1:22837956-22837975 | MS.gene26567:CDS | 35.0% |
| !! | TATAAGGTTGGTTTAGTGGT+TGG | + | chr4.1:22837461-22837480 | MS.gene26567:intron | 35.0% |
| AAACTCAAAAACAGGGCCTA+AGG | + | chr4.1:22837354-22837373 | MS.gene26567:intron | 40.0% | |
| AATAAACGAAACACCGCCTT+AGG | - | chr4.1:22837373-22837392 | None:intergenic | 40.0% | |
| AATGGATCATACCTTGGTAG+TGG | - | chr4.1:22836721-22836740 | None:intergenic | 40.0% | |
| ACCGTTATAGATGGCTTAAG+TGG | + | chr4.1:22836850-22836869 | MS.gene26567:intron | 40.0% | |
| AGCGAAAATGGATCATACCT+TGG | - | chr4.1:22836727-22836746 | None:intergenic | 40.0% | |
| AGGAAATGTTGCTGATGCTT+AGG | + | chr4.1:22836767-22836786 | MS.gene26567:intron | 40.0% | |
| AGGGAAGGGAAATGTAAGAA+AGG | + | chr4.1:22837294-22837313 | MS.gene26567:intron | 40.0% | |
| ATGTTGCATGGGGGAATATA+AGG | + | chr4.1:22837445-22837464 | MS.gene26567:intron | 40.0% | |
| CAGAACCCATCTTATGAGTT+CGG | - | chr4.1:22836934-22836953 | None:intergenic | 40.0% | |
| CCTCTCCAAACTCAAAAACA+GGG | + | chr4.1:22837347-22837366 | MS.gene26567:intron | 40.0% | |
| CGTATCAGTACTTCATAGGA+GGG | + | chr4.1:22837257-22837276 | MS.gene26567:intron | 40.0% | |
| CTGGGGATAGAGGTAATATA+TGG | - | chr4.1:22837893-22837912 | None:intergenic | 40.0% | |
| CTTGAATATCCACAGCAACT+CGG | + | chr4.1:22838548-22838567 | MS.gene26567:intron | 40.0% | |
| GCCAACATAAGGAAACAATC+AGG | + | chr4.1:22838114-22838133 | MS.gene26567:CDS | 40.0% | |
| GGCAAGCTAATCAAACATTG+AGG | - | chr4.1:22837777-22837796 | None:intergenic | 40.0% | |
| GGGATAGAGGTAATATATGG+TGG | - | chr4.1:22837890-22837909 | None:intergenic | 40.0% | |
| GTATCAGTACTTCATAGGAG+GGG | + | chr4.1:22837258-22837277 | MS.gene26567:intron | 40.0% | |
| TATCAGTACTTCATAGGAGG+GGG | + | chr4.1:22837259-22837278 | MS.gene26567:intron | 40.0% | |
| TCAAGAGAATGCGAGAATCT+CGG | + | chr4.1:22836480-22836499 | MS.gene26567:CDS | 40.0% | |
| TCCGAGTATGTCAAAGACAA+AGG | + | chr4.1:22836543-22836562 | MS.gene26567:CDS | 40.0% | |
| TCCTCTCCAAACTCAAAAAC+AGG | + | chr4.1:22837346-22837365 | MS.gene26567:intron | 40.0% | |
| TGCAACCGAACTCATAAGAT+GGG | + | chr4.1:22836926-22836945 | MS.gene26567:intron | 40.0% | |
| TGTCCGTATCAGTACTTCAT+AGG | + | chr4.1:22837253-22837272 | MS.gene26567:intron | 40.0% | |
| ! | AATGATTTTCCGAGTTGCTG+TGG | - | chr4.1:22838560-22838579 | None:intergenic | 40.0% |
| ! | ATTGATCTCAAGGCGTCTAT+TGG | + | chr4.1:22838191-22838210 | MS.gene26567:intron | 40.0% |
| ! | CACGTTGCAATCTTTTCCAA+TGG | + | chr4.1:22837009-22837028 | MS.gene26567:intron | 40.0% |
| ! | TTACCTCTATCCCCAGTTTT+TGG | + | chr4.1:22837897-22837916 | MS.gene26567:intron | 40.0% |
| !! | CCTCCTATGAAGTACTGATA+CGG | - | chr4.1:22837259-22837278 | None:intergenic | 40.0% |
| !! | TAAGGTTGGTTTAGTGGTTG+GGG | + | chr4.1:22837463-22837482 | MS.gene26567:intron | 40.0% |
| !!! | GTTTTTGAGTTTGGAGAGGA+GGG | - | chr4.1:22837346-22837365 | None:intergenic | 40.0% |
| !!! | TGTTTTTGAGTTTGGAGAGG+AGG | - | chr4.1:22837347-22837366 | None:intergenic | 40.0% |
| !!! | TTAGGCCCTGTTTTTGAGTT+TGG | - | chr4.1:22837355-22837374 | None:intergenic | 40.0% |
| !!! | TTTTTGAGTTTGGAGAGGAG+GGG | - | chr4.1:22837345-22837364 | None:intergenic | 40.0% |
| AATGGGGCAACCGTTATAGA+TGG | + | chr4.1:22836841-22836860 | MS.gene26567:intron | 45.0% | |
| ACAAGAACAGGATGCAAGCA+GGG | - | chr4.1:22838147-22838166 | None:intergenic | 45.0% | |
| ACTGCAGTATCTCAGAGAGA+AGG | + | chr4.1:22838773-22838792 | MS.gene26567:CDS | 45.0% | |
| AGGCGTCTATTGGAATGCTA+TGG | + | chr4.1:22838201-22838220 | MS.gene26567:intron | 45.0% | |
| ATAGGAGGGGGGTAAAATGA+TGG | + | chr4.1:22837271-22837290 | MS.gene26567:intron | 45.0% | |
| ATCAGTACTTCATAGGAGGG+GGG | + | chr4.1:22837260-22837279 | MS.gene26567:intron | 45.0% | |
| CAGAGAGAAGGTGAAACCTT+CGG | + | chr4.1:22838785-22838804 | MS.gene26567:CDS | 45.0% | |
| CCGTATCAGTACTTCATAGG+AGG | + | chr4.1:22837256-22837275 | MS.gene26567:intron | 45.0% | |
| GGAAAAGATTGCAACGTGCA+AGG | - | chr4.1:22837007-22837026 | None:intergenic | 45.0% | |
| GTGCAACCGAACTCATAAGA+TGG | + | chr4.1:22836925-22836944 | MS.gene26567:intron | 45.0% | |
| TATAACGGTTGCCCCATTGA+AGG | - | chr4.1:22836839-22836858 | None:intergenic | 45.0% | |
| TCTGTTTCACGGTGCTTCAT+CGG | + | chr4.1:22836446-22836465 | MS.gene26567:CDS | 45.0% | |
| TGCATGGGGGAATATAAGGT+TGG | + | chr4.1:22837449-22837468 | MS.gene26567:intron | 45.0% | |
| ! | GGGTAAAATGATGGAGGGAA+GGG | + | chr4.1:22837280-22837299 | MS.gene26567:intron | 45.0% |
| !! | TACCTTGGTAGTGGCATCAT+TGG | - | chr4.1:22836712-22836731 | None:intergenic | 45.0% |
| !! | TGAAGTACTGATACGGACAC+CGG | - | chr4.1:22837252-22837271 | None:intergenic | 45.0% |
| !!! | CCCTGTTTTTGAGTTTGGAG+AGG | - | chr4.1:22837350-22837369 | None:intergenic | 45.0% |
| ACTCTGTTCGCGAGTTTGGA+GGG | + | chr4.1:22837094-22837113 | MS.gene26567:intron | 50.0% | |
| AGGAGGGGAATGAAGAGCTT+CGG | - | chr4.1:22837330-22837349 | None:intergenic | 50.0% | |
| ATCAGAGCACAAAGCGAGTC+CGG | - | chr4.1:22836511-22836530 | None:intergenic | 50.0% | |
| CAAACTCGCGAACAGAGTCT+TGG | - | chr4.1:22837092-22837111 | None:intergenic | 50.0% | |
| CAAGACTCTGTTCGCGAGTT+TGG | + | chr4.1:22837090-22837109 | MS.gene26567:intron | 50.0% | |
| CACAAGAACAGGATGCAAGC+AGG | - | chr4.1:22838148-22838167 | None:intergenic | 50.0% | |
| CGTCCAAAAACTGGGGATAG+AGG | - | chr4.1:22837903-22837922 | None:intergenic | 50.0% | |
| CTCAAAAACAGGGCCTAAGG+CGG | + | chr4.1:22837357-22837376 | MS.gene26567:intron | 50.0% | |
| CTCCAATGATGCCACTACCA+AGG | + | chr4.1:22836707-22836726 | MS.gene26567:CDS | 50.0% | |
| CTGCTTGCATCCTGTTCTTG+TGG | + | chr4.1:22838146-22838165 | MS.gene26567:intron | 50.0% | |
| GGATAATGCGGGCCAACATA+AGG | + | chr4.1:22838103-22838122 | MS.gene26567:CDS | 50.0% | |
| GTCATGACACGCCTAATCCA+AGG | - | chr4.1:22837149-22837168 | None:intergenic | 50.0% | |
| TATGAAGCACGGACACTCCT+TGG | + | chr4.1:22837129-22837148 | MS.gene26567:intron | 50.0% | |
| TGCGAGAATCTCGGTTTCAC+CGG | + | chr4.1:22836489-22836508 | MS.gene26567:CDS | 50.0% | |
| ! | GAGGGGGGTAAAATGATGGA+GGG | + | chr4.1:22837275-22837294 | MS.gene26567:intron | 50.0% |
| ! | GGGGTAAAATGATGGAGGGA+AGG | + | chr4.1:22837279-22837298 | MS.gene26567:intron | 50.0% |
| !! | GTGGTGTTGGCTCTGTTTCA+CGG | + | chr4.1:22836435-22836454 | MS.gene26567:CDS | 50.0% |
| ACCGGACACAACACAGACAC+TGG | - | chr4.1:22837234-22837253 | None:intergenic | 55.0% | |
| AGGGGAATGAAGAGCTTCGG+GGG | - | chr4.1:22837327-22837346 | None:intergenic | 55.0% | |
| GAAAGTCGTTGCGGTGGTTG+TGG | + | chr4.1:22836410-22836429 | MS.gene26567:CDS | 55.0% | |
| GACTCTGTTCGCGAGTTTGG+AGG | + | chr4.1:22837093-22837112 | MS.gene26567:intron | 55.0% | |
| GAGGGGAATGAAGAGCTTCG+GGG | - | chr4.1:22837328-22837347 | None:intergenic | 55.0% | |
| GCACGGACACTCCTTGGATT+AGG | + | chr4.1:22837135-22837154 | MS.gene26567:intron | 55.0% | |
| GCCAGTGTCTGTGTTGTGTC+CGG | + | chr4.1:22837230-22837249 | MS.gene26567:intron | 55.0% | |
| GGAGGGGAATGAAGAGCTTC+GGG | - | chr4.1:22837329-22837348 | None:intergenic | 55.0% | |
| GGAGGGGGGTAAAATGATGG+AGG | + | chr4.1:22837274-22837293 | MS.gene26567:intron | 55.0% | |
| GTTCGCGAGTTTGGAGGGAA+GGG | + | chr4.1:22837099-22837118 | MS.gene26567:intron | 55.0% | |
| TGTTCGCGAGTTTGGAGGGA+AGG | + | chr4.1:22837098-22837117 | MS.gene26567:intron | 55.0% | |
| TTGGTTTAGTGGTTGGGGCG+GGG | + | chr4.1:22837468-22837487 | MS.gene26567:intron | 55.0% | |
| ! | GTTGGTTTAGTGGTTGGGGC+GGG | + | chr4.1:22837467-22837486 | MS.gene26567:intron | 55.0% |
| !! | GGTTGGTTTAGTGGTTGGGG+CGG | + | chr4.1:22837466-22837485 | MS.gene26567:intron | 55.0% |
| AGGGAGGGGGCTATGAAGCA+CGG | + | chr4.1:22837118-22837137 | MS.gene26567:intron | 60.0% | |
| AGTCGTTGCGGTGGTTGTGG+TGG | + | chr4.1:22836413-22836432 | MS.gene26567:CDS | 60.0% | |
| CGAGTTTGGAGGGAAGGGAG+GGG | + | chr4.1:22837104-22837123 | MS.gene26567:intron | 60.0% | |
| GAGTTTGGAGGGAAGGGAGG+GGG | + | chr4.1:22837105-22837124 | MS.gene26567:intron | 60.0% | |
| GCGAGTTTGGAGGGAAGGGA+GGG | + | chr4.1:22837103-22837122 | MS.gene26567:intron | 60.0% | |
| TGGTTTAGTGGTTGGGGCGG+GGG | + | chr4.1:22837469-22837488 | MS.gene26567:intron | 60.0% | |
| !! | GGTGGTTGTGGTGGTGGTGT+TGG | + | chr4.1:22836422-22836441 | MS.gene26567:CDS | 60.0% |
| CGCGAGTTTGGAGGGAAGGG+AGG | + | chr4.1:22837102-22837121 | MS.gene26567:intron | 65.0% | |
| CGTTGCGGTGGTTGTGGTGG+TGG | + | chr4.1:22836416-22836435 | MS.gene26567:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 22836405 | 22838818 | 22836405 | ID=MS.gene26567 |
| chr4.1 | mRNA | 22836405 | 22838818 | 22836405 | ID=MS.gene26567.t1;Parent=MS.gene26567 |
| chr4.1 | exon | 22836405 | 22836564 | 22836405 | ID=MS.gene26567.t1.exon1;Parent=MS.gene26567.t1 |
| chr4.1 | CDS | 22836405 | 22836564 | 22836405 | ID=cds.MS.gene26567.t1;Parent=MS.gene26567.t1 |
| chr4.1 | exon | 22836670 | 22836728 | 22836670 | ID=MS.gene26567.t1.exon2;Parent=MS.gene26567.t1 |
| chr4.1 | CDS | 22836670 | 22836728 | 22836670 | ID=cds.MS.gene26567.t1;Parent=MS.gene26567.t1 |
| chr4.1 | exon | 22837954 | 22838135 | 22837954 | ID=MS.gene26567.t1.exon3;Parent=MS.gene26567.t1 |
| chr4.1 | CDS | 22837954 | 22838135 | 22837954 | ID=cds.MS.gene26567.t1;Parent=MS.gene26567.t1 |
| chr4.1 | exon | 22838746 | 22838818 | 22838746 | ID=MS.gene26567.t1.exon4;Parent=MS.gene26567.t1 |
| chr4.1 | CDS | 22838746 | 22838818 | 22838746 | ID=cds.MS.gene26567.t1;Parent=MS.gene26567.t1 |
| Gene Sequence |
| Protein sequence |
