AlfalfaGEDB | MS.gene28491

M. sativa cultivar XinJiangDaYe / MS.gene28491

KEGG: -
GO: -
PFAM: PF05055.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28491.t1	XP_003629491.1	98.4	375	6	0	1	375	1	375	1.70E-174	622.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28491.t1	Q56XQ0	47.0	379	195	2	1	374	2	379	9.4e-89	328.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28491.t1	G7LEW4	98.4	375	6	0	1	375	1	375	1.2e-174	622.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049208	MS.gene28491	0.800363	1.49E-48	-1.69E-46
MS.gene049264	MS.gene28491	0.824037	1.00E-53	-1.69E-46
MS.gene049786	MS.gene28491	0.810325	1.22E-50	-1.69E-46
MS.gene04991	MS.gene28491	-0.802468	5.53E-49	-1.69E-46
MS.gene050114	MS.gene28491	0.80951	1.83E-50	-1.69E-46
MS.gene051490	MS.gene28491	0.823959	1.05E-53	-1.69E-46
MS.gene051676	MS.gene28491	0.802432	5.63E-49	-1.69E-46
MS.gene051831	MS.gene28491	0.823989	1.03E-53	-1.69E-46
MS.gene052242	MS.gene28491	-0.809458	1.87E-50	-1.69E-46
MS.gene052493	MS.gene28491	0.811804	5.83E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28491.t1	MTR_8g078100	98.133	375	7	0	1	375	1	375	0.0	756
MS.gene28491.t1	MTR_5g019430	70.292	377	107	2	1	372	1	377	0.0	542
MS.gene28491.t1	MTR_4g069160	58.355	377	151	4	1	375	1	373	3.39e-147	421
MS.gene28491.t1	MTR_1g034480	55.733	375	159	3	1	374	1	369	5.35e-137	395
MS.gene28491.t1	MTR_3g011140	62.162	74	28	0	285	358	1	74	9.19e-26	99.8
MS.gene28491.t1	MTR_8g068520	22.293	314	206	7	76	373	86	377	6.06e-12	67.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28491.t1	AT2G18630	54.354	379	167	2	1	374	2	379	2.15e-138	399
MS.gene28491.t1	AT2G18630	54.354	379	167	2	1	374	2	379	3.20e-138	399
MS.gene28491.t1	AT4G34320	55.319	376	159	5	1	375	1	368	6.37e-132	382
MS.gene28491.t1	AT4G34320	55.319	376	159	5	1	375	1	368	6.37e-132	382
MS.gene28491.t1	AT5G66675	53.134	367	162	4	16	374	32	396	2.45e-126	370
MS.gene28491.t1	AT5G66675	53.134	367	162	4	16	374	32	396	2.45e-126	370
MS.gene28491.t1	AT5G66675	53.134	367	162	4	16	374	32	396	2.45e-126	370
MS.gene28491.t1	AT5G66675	53.134	367	162	4	16	374	32	396	2.45e-126	370
MS.gene28491.t1	AT4G34330	48.851	348	162	3	24	371	17	348	1.48e-106	317
MS.gene28491.t1	AT5G66670	41.899	358	201	2	21	371	35	392	3.38e-88	272

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Find 57 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGGATTTGTTCGCGT+TGG	0.546843	8.4:-28506927	MS.gene28491:CDS
AAATAAAACTCCTCCGTAAA+AGG	0.159235	8.4:+28506704	None:intergenic
AACAGCTTTGGCTGCGGCGT+TGG	0.383556	8.4:-28506489	MS.gene28491:CDS
AAGAGAACTAATAACCCTAT+TGG	0.447555	8.4:+28507072	None:intergenic
AATAAAACTCCTCCGTAAAA+GGG	0.512251	8.4:+28506705	None:intergenic
AATCACTCAAGTCATGGAAG+AGG	0.591019	8.4:-28506598	MS.gene28491:CDS
AATTACAAAACTCCAACGTC+TGG	0.474086	8.4:+28506879	None:intergenic
AGAAGGCTATAAAGGGACAA+AGG	0.553211	8.4:-28506412	MS.gene28491:CDS
AGGGAATTCAAGCAAGATGA+TGG	0.547310	8.4:-28507221	MS.gene28491:CDS
AGGTGCAAAATGGGCTTGAA+GGG	0.480313	8.4:-28506781	MS.gene28491:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAAAACTCCTCCGTAAA+AGG	+	chr8.4:28506646-28506665	None:intergenic	30.0%
AAGAGAACTAATAACCCTAT+TGG	+	chr8.4:28506278-28506297	None:intergenic	30.0%
AATAAAACTCCTCCGTAAAA+GGG	+	chr8.4:28506645-28506664	None:intergenic	30.0%
GAATCAAGTGATTGTTAAGT+CGG	-	chr8.4:28506522-28506541	MS.gene28491:CDS	30.0%
GATTTGCAATTTCTTCAACA+TGG	+	chr8.4:28506701-28506720	None:intergenic	30.0%
GCTAATGATTGCACAAAAAT+GGG	-	chr8.4:28506154-28506173	MS.gene28491:CDS	30.0%
TCATCAAAACTTTGCAAGTT+TGG	+	chr8.4:28506238-28506257	None:intergenic	30.0%
TGCTAATGATTGCACAAAAA+TGG	-	chr8.4:28506153-28506172	MS.gene28491:CDS	30.0%
TGGTACTTACATTTCATTGA+AGG	-	chr8.4:28506981-28507000	MS.gene28491:CDS	30.0%
AATTACAAAACTCCAACGTC+TGG	+	chr8.4:28506471-28506490	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	28506121	28507248	28506121	ID=MS.gene28491
chr8.4	mRNA	28506121	28507248	28506121	ID=MS.gene28491.t1;Parent=MS.gene28491
chr8.4	exon	28506121	28507248	28506121	ID=MS.gene28491.t1.exon1;Parent=MS.gene28491.t1
chr8.4	CDS	28506121	28507248	28506121	ID=cds.MS.gene28491.t1;Parent=MS.gene28491.t1

Gene Sequence

>MS.gene28491

ATGGGAGGGAATTCAAGCAAGATGATGGTTGATGCTAATGATTGCACAAAAATGGGTACTCATTCTGTGTATGCAGCTGATTTAAGCTCATATGAAGCTGCATGTATCAAAGATCCAAACTTGCAAAGTTTTGATGAGAGTATTAAAGAGCATACCAATAGGGTTATTAGTTCTCTTGCTACTGGTGTTGAAGTTAGGTCTTTATCTTTCGATTCGCTGCGAGAAGTTACTGATAGTTTGCTTGAGATGAATCATGAAGTTGTTAAAGTTATTTTGGATTGCAAGAGGGATATATGGGGAAACAAGGATTTGTTCGCGTTGGTTAATGATTATTTTGATAATAGTCTCCAGACGTTGGAGTTTTGTAATTCTCTTGAGAAATGTTTGAGACGGGCACGCGAGAATCAAGTGATTGTTAAGTCGGTGATTACTTATTTTGAAGAAGAGGTGCAAAATGGGCTTGAAGGGGGAACTTGTGTGAAGACATTGCAAGAGCTTAGGAATTTTAAGGATGCTGGGGACCCTTTTACGGAGGAGTTTTATTTGTTGTTTCAATCGGTTTATACGCAGCAGGCAACCATGTTGAAGAAATTGCAAATCAGAAAGAGAAAGCTTGATAAGAAGTTGAAATCACTCAAGTCATGGAAGAGGGTGTCAAATGCAATTTTTTTGGCTGCGTTTGTTTCGGTGTTGATTTTCTCTGTGGTTGCAGCTTCTATTGCTGCTCCGCCCGTTGTAACAGCTTTGGCTGCGGCGTTGGCTGTTCCATTCGGGTCGGTTGGAAAATGGTGCAACTCACTTTTTAAGGGATATGAGAAGGCTATAAAGGGACAAAGGGAAGTAGTTAGCTCAATGCAGCTTGGTACTTACATTTCATTGAAGGATTTGGACAACATTCGGGTGCTTACAAACAAATTGGAACTACAGCTTGAATCGTTATTGCAGAATGCTGATTTTGCTCTTAAAAATGAGGATGTGATAAAGCTTGCAATCGATGAGATTAAGAAGAATATAGAAACTTTTTCAGGAACATTGGAAACTCTAAGTGCAAATGCTGATAAATGCAGTCGACAGATAAGAAAAGCGAGGACAGTCGTTATACAAAATATAATCAAAAGACCTGATTGA

Protein sequence

>MS.gene28491.t1

MGGNSSKMMVDANDCTKMGTHSVYAADLSSYEAACIKDPNLQSFDESIKEHTNRVISSLATGVEVRSLSFDSLREVTDSLLEMNHEVVKVILDCKRDIWGNKDLFALVNDYFDNSLQTLEFCNSLEKCLRRARENQVIVKSVITYFEEEVQNGLEGGTCVKTLQELRNFKDAGDPFTEEFYLLFQSVYTQQATMLKKLQIRKRKLDKKLKSLKSWKRVSNAIFLAAFVSVLIFSVVAASIAAPPVVTALAAALAVPFGSVGKWCNSLFKGYEKAIKGQREVVSSMQLGTYISLKDLDNIRVLTNKLELQLESLLQNADFALKNEDVIKLAIDEIKKNIETFSGTLETLSANADKCSRQIRKARTVVIQNIIKRPD