Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28491.t1 | XP_003629491.1 | 98.4 | 375 | 6 | 0 | 1 | 375 | 1 | 375 | 1.70E-174 | 622.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28491.t1 | Q56XQ0 | 47.0 | 379 | 195 | 2 | 1 | 374 | 2 | 379 | 9.4e-89 | 328.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28491.t1 | G7LEW4 | 98.4 | 375 | 6 | 0 | 1 | 375 | 1 | 375 | 1.2e-174 | 622.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049208 | MS.gene28491 | 0.800363 | 1.49E-48 | -1.69E-46 |
| MS.gene049264 | MS.gene28491 | 0.824037 | 1.00E-53 | -1.69E-46 |
| MS.gene049786 | MS.gene28491 | 0.810325 | 1.22E-50 | -1.69E-46 |
| MS.gene04991 | MS.gene28491 | -0.802468 | 5.53E-49 | -1.69E-46 |
| MS.gene050114 | MS.gene28491 | 0.80951 | 1.83E-50 | -1.69E-46 |
| MS.gene051490 | MS.gene28491 | 0.823959 | 1.05E-53 | -1.69E-46 |
| MS.gene051676 | MS.gene28491 | 0.802432 | 5.63E-49 | -1.69E-46 |
| MS.gene051831 | MS.gene28491 | 0.823989 | 1.03E-53 | -1.69E-46 |
| MS.gene052242 | MS.gene28491 | -0.809458 | 1.87E-50 | -1.69E-46 |
| MS.gene052493 | MS.gene28491 | 0.811804 | 5.83E-51 | -1.69E-46 |
| MS.gene053094 | MS.gene28491 | 0.803417 | 3.52E-49 | -1.69E-46 |
| MS.gene053189 | MS.gene28491 | 0.802345 | 5.86E-49 | -1.69E-46 |
| MS.gene053298 | MS.gene28491 | 0.817732 | 2.83E-52 | -1.69E-46 |
| MS.gene053340 | MS.gene28491 | 0.813666 | 2.28E-51 | -1.69E-46 |
| MS.gene054222 | MS.gene28491 | 0.814738 | 1.32E-51 | -1.69E-46 |
| MS.gene054479 | MS.gene28491 | 0.824327 | 8.57E-54 | -1.69E-46 |
| MS.gene054576 | MS.gene28491 | 0.834012 | 3.83E-56 | -1.69E-46 |
| MS.gene05469 | MS.gene28491 | 0.813436 | 2.56E-51 | -1.69E-46 |
| MS.gene054892 | MS.gene28491 | 0.820036 | 8.48E-53 | -1.69E-46 |
| MS.gene054893 | MS.gene28491 | 0.821313 | 4.31E-53 | -1.69E-46 |
| MS.gene055311 | MS.gene28491 | 0.809555 | 1.79E-50 | -1.69E-46 |
| MS.gene055313 | MS.gene28491 | 0.820492 | 6.67E-53 | -1.69E-46 |
| MS.gene055442 | MS.gene28491 | 0.802431 | 5.63E-49 | -1.69E-46 |
| MS.gene055603 | MS.gene28491 | 0.8137 | 2.24E-51 | -1.69E-46 |
| MS.gene055864 | MS.gene28491 | 0.800281 | 1.55E-48 | -1.69E-46 |
| MS.gene056638 | MS.gene28491 | 0.822908 | 1.84E-53 | -1.69E-46 |
| MS.gene056699 | MS.gene28491 | 0.815778 | 7.76E-52 | -1.69E-46 |
| MS.gene057360 | MS.gene28491 | 0.805853 | 1.09E-49 | -1.69E-46 |
| MS.gene05761 | MS.gene28491 | 0.801593 | 8.37E-49 | -1.69E-46 |
| MS.gene058758 | MS.gene28491 | 0.81714 | 3.85E-52 | -1.69E-46 |
| MS.gene059170 | MS.gene28491 | 0.81418 | 1.76E-51 | -1.69E-46 |
| MS.gene059774 | MS.gene28491 | 0.825665 | 4.14E-54 | -1.69E-46 |
| MS.gene059965 | MS.gene28491 | 0.820801 | 5.66E-53 | -1.69E-46 |
| MS.gene06010 | MS.gene28491 | 0.81659 | 5.11E-52 | -1.69E-46 |
| MS.gene060412 | MS.gene28491 | 0.800995 | 1.11E-48 | -1.69E-46 |
| MS.gene060697 | MS.gene28491 | 0.824379 | 8.33E-54 | -1.69E-46 |
| MS.gene060840 | MS.gene28491 | 0.815002 | 1.16E-51 | -1.69E-46 |
| MS.gene060851 | MS.gene28491 | 0.800695 | 1.28E-48 | -1.69E-46 |
| MS.gene060852 | MS.gene28491 | 0.801634 | 8.21E-49 | -1.69E-46 |
| MS.gene060869 | MS.gene28491 | 0.823734 | 1.18E-53 | -1.69E-46 |
| MS.gene060870 | MS.gene28491 | 0.806423 | 8.28E-50 | -1.69E-46 |
| MS.gene060932 | MS.gene28491 | 0.827276 | 1.71E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28491.t1 | MTR_8g078100 | 98.133 | 375 | 7 | 0 | 1 | 375 | 1 | 375 | 0.0 | 756 |
| MS.gene28491.t1 | MTR_5g019430 | 70.292 | 377 | 107 | 2 | 1 | 372 | 1 | 377 | 0.0 | 542 |
| MS.gene28491.t1 | MTR_4g069160 | 58.355 | 377 | 151 | 4 | 1 | 375 | 1 | 373 | 3.39e-147 | 421 |
| MS.gene28491.t1 | MTR_1g034480 | 55.733 | 375 | 159 | 3 | 1 | 374 | 1 | 369 | 5.35e-137 | 395 |
| MS.gene28491.t1 | MTR_3g011140 | 62.162 | 74 | 28 | 0 | 285 | 358 | 1 | 74 | 9.19e-26 | 99.8 |
| MS.gene28491.t1 | MTR_8g068520 | 22.293 | 314 | 206 | 7 | 76 | 373 | 86 | 377 | 6.06e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28491.t1 | AT2G18630 | 54.354 | 379 | 167 | 2 | 1 | 374 | 2 | 379 | 2.15e-138 | 399 |
| MS.gene28491.t1 | AT2G18630 | 54.354 | 379 | 167 | 2 | 1 | 374 | 2 | 379 | 3.20e-138 | 399 |
| MS.gene28491.t1 | AT4G34320 | 55.319 | 376 | 159 | 5 | 1 | 375 | 1 | 368 | 6.37e-132 | 382 |
| MS.gene28491.t1 | AT4G34320 | 55.319 | 376 | 159 | 5 | 1 | 375 | 1 | 368 | 6.37e-132 | 382 |
| MS.gene28491.t1 | AT5G66675 | 53.134 | 367 | 162 | 4 | 16 | 374 | 32 | 396 | 2.45e-126 | 370 |
| MS.gene28491.t1 | AT5G66675 | 53.134 | 367 | 162 | 4 | 16 | 374 | 32 | 396 | 2.45e-126 | 370 |
| MS.gene28491.t1 | AT5G66675 | 53.134 | 367 | 162 | 4 | 16 | 374 | 32 | 396 | 2.45e-126 | 370 |
| MS.gene28491.t1 | AT5G66675 | 53.134 | 367 | 162 | 4 | 16 | 374 | 32 | 396 | 2.45e-126 | 370 |
| MS.gene28491.t1 | AT4G34330 | 48.851 | 348 | 162 | 3 | 24 | 371 | 17 | 348 | 1.48e-106 | 317 |
| MS.gene28491.t1 | AT5G66670 | 41.899 | 358 | 201 | 2 | 21 | 371 | 35 | 392 | 3.38e-88 | 272 |
| MS.gene28491.t1 | AT5G66670 | 41.899 | 358 | 201 | 2 | 21 | 371 | 35 | 392 | 3.38e-88 | 272 |
| MS.gene28491.t1 | AT5G66670 | 41.899 | 358 | 201 | 2 | 21 | 371 | 35 | 392 | 3.38e-88 | 272 |
| MS.gene28491.t1 | AT5G66670 | 41.899 | 358 | 201 | 2 | 21 | 371 | 35 | 392 | 3.38e-88 | 272 |
| MS.gene28491.t1 | AT5G66660 | 41.713 | 362 | 203 | 2 | 21 | 374 | 35 | 396 | 5.42e-85 | 263 |
| MS.gene28491.t1 | AT3G28270 | 27.933 | 358 | 242 | 6 | 28 | 370 | 16 | 372 | 6.11e-36 | 135 |
| MS.gene28491.t1 | AT3G28270 | 27.933 | 358 | 242 | 6 | 28 | 370 | 16 | 372 | 6.11e-36 | 135 |
| MS.gene28491.t1 | AT3G28290 | 25.661 | 378 | 242 | 12 | 24 | 370 | 11 | 380 | 4.66e-29 | 116 |
| MS.gene28491.t1 | AT3G28300 | 25.661 | 378 | 242 | 12 | 24 | 370 | 11 | 380 | 4.66e-29 | 116 |
| MS.gene28491.t1 | AT3G57100 | 25.705 | 319 | 210 | 5 | 65 | 370 | 43 | 347 | 2.05e-25 | 105 |
| MS.gene28491.t1 | AT3G28320 | 23.492 | 315 | 214 | 8 | 80 | 370 | 2 | 313 | 2.78e-20 | 90.9 |
Find 57 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATAAAACTCCTCCGTAAA+AGG | 0.159235 | 8.4:+28506704 | None:intergenic |
| TGAAGTTGTTAAAGTTATTT+TGG | 0.163128 | 8.4:-28506972 | MS.gene28491:CDS |
| TCATCAAAACTTTGCAAGTT+TGG | 0.189922 | 8.4:+28507112 | None:intergenic |
| TCGGGTGCTTACAAACAAAT+TGG | 0.255573 | 8.4:-28506330 | MS.gene28491:CDS |
| TGGATTGCAAGAGGGATATA+TGG | 0.257789 | 8.4:-28506952 | MS.gene28491:CDS |
| TTTGAAGAAGAGGTGCAAAA+TGG | 0.287245 | 8.4:-28506791 | MS.gene28491:CDS |
| TTACATTTCATTGAAGGATT+TGG | 0.290195 | 8.4:-28506360 | MS.gene28491:CDS |
| TTGCTACTGGTGTTGAAGTT+AGG | 0.293911 | 8.4:-28507051 | MS.gene28491:CDS |
| GGGATATGAGAAGGCTATAA+AGG | 0.305251 | 8.4:-28506420 | MS.gene28491:CDS |
| CATTCGGGTCGGTTGGAAAA+TGG | 0.337016 | 8.4:-28506460 | MS.gene28491:CDS |
| GCGGCGTTGGCTGTTCCATT+CGG | 0.349853 | 8.4:-28506476 | MS.gene28491:CDS |
| TGAAGGATTTGGACAACATT+CGG | 0.353812 | 8.4:-28506349 | MS.gene28491:CDS |
| AACAGCTTTGGCTGCGGCGT+TGG | 0.383556 | 8.4:-28506489 | MS.gene28491:CDS |
| GTTATTAGTTCTCTTGCTAC+TGG | 0.384834 | 8.4:-28507064 | MS.gene28491:CDS |
| CGGCGTTGGCTGTTCCATTC+GGG | 0.389129 | 8.4:-28506475 | MS.gene28491:CDS |
| GAAGGATTTGGACAACATTC+GGG | 0.389768 | 8.4:-28506348 | MS.gene28491:CDS |
| GGATTGCAAGAGGGATATAT+GGG | 0.412828 | 8.4:-28506951 | MS.gene28491:CDS |
| TCCGCCCGTTGTAACAGCTT+TGG | 0.415627 | 8.4:-28506501 | MS.gene28491:CDS |
| GAGGTGCAAAATGGGCTTGA+AGG | 0.435928 | 8.4:-28506782 | MS.gene28491:CDS |
| TTGAAGAAGAGGTGCAAAAT+GGG | 0.439323 | 8.4:-28506790 | MS.gene28491:CDS |
| AAGAGAACTAATAACCCTAT+TGG | 0.447555 | 8.4:+28507072 | None:intergenic |
| GGATATGAGAAGGCTATAAA+GGG | 0.447749 | 8.4:-28506419 | MS.gene28491:CDS |
| GTATTAAAGAGCATACCAAT+AGG | 0.457807 | 8.4:-28507087 | MS.gene28491:CDS |
| TGGTACTTACATTTCATTGA+AGG | 0.469068 | 8.4:-28506366 | MS.gene28491:CDS |
| GCAGCCAAAGCTGTTACAAC+GGG | 0.472631 | 8.4:+28506497 | None:intergenic |
| AATTACAAAACTCCAACGTC+TGG | 0.474086 | 8.4:+28506879 | None:intergenic |
| TCTAAGACCTCATCTCAATC+AGG | 0.476204 | 8.4:+28506107 | None:intergenic |
| AGGTGCAAAATGGGCTTGAA+GGG | 0.480313 | 8.4:-28506781 | MS.gene28491:CDS |
| CTCTTGAGAAATGTTTGAGA+CGG | 0.491708 | 8.4:-28506856 | MS.gene28491:CDS |
| GCTGTTCCATTCGGGTCGGT+TGG | 0.492398 | 8.4:-28506467 | MS.gene28491:CDS |
| TGAAGACATTGCAAGAGCTT+AGG | 0.500716 | 8.4:-28506748 | MS.gene28491:CDS |
| TCAATCGGTTTATACGCAGC+AGG | 0.509528 | 8.4:-28506675 | MS.gene28491:CDS |
| TATTAAAGAGCATACCAATA+GGG | 0.511363 | 8.4:-28507086 | MS.gene28491:CDS |
| CGTTGTAACAGCTTTGGCTG+CGG | 0.511718 | 8.4:-28506495 | MS.gene28491:CDS |
| AATAAAACTCCTCCGTAAAA+GGG | 0.512251 | 8.4:+28506705 | None:intergenic |
| TCTTGAGAAATGTTTGAGAC+GGG | 0.517157 | 8.4:-28506855 | MS.gene28491:CDS |
| CGCAGCCAAAGCTGTTACAA+CGG | 0.524710 | 8.4:+28506496 | None:intergenic |
| AAACAAGGATTTGTTCGCGT+TGG | 0.546843 | 8.4:-28506927 | MS.gene28491:CDS |
| AGGGAATTCAAGCAAGATGA+TGG | 0.547310 | 8.4:-28507221 | MS.gene28491:CDS |
| AGTTGAAATCACTCAAGTCA+TGG | 0.549628 | 8.4:-28506604 | MS.gene28491:CDS |
| GAAGGCTATAAAGGGACAAA+GGG | 0.553000 | 8.4:-28506411 | MS.gene28491:CDS |
| AGAAGGCTATAAAGGGACAA+AGG | 0.553211 | 8.4:-28506412 | MS.gene28491:CDS |
| GAATCAAGTGATTGTTAAGT+CGG | 0.557993 | 8.4:-28506825 | MS.gene28491:CDS |
| GCCAAAGCTGTTACAACGGG+CGG | 0.569880 | 8.4:+28506500 | None:intergenic |
| ATCTGAGGTATTAAGATGGG+AGG | 0.576566 | 8.4:-28507241 | None:intergenic |
| GTTGGCTGTTCCATTCGGGT+CGG | 0.587471 | 8.4:-28506471 | MS.gene28491:CDS |
| AATCACTCAAGTCATGGAAG+AGG | 0.591019 | 8.4:-28506598 | MS.gene28491:CDS |
| GATTTGCAATTTCTTCAACA+TGG | 0.599579 | 8.4:+28506649 | None:intergenic |
| TGATAATAGTCTCCAGACGT+TGG | 0.605979 | 8.4:-28506891 | MS.gene28491:CDS |
| GAGGGATATATGGGGAAACA+AGG | 0.609168 | 8.4:-28506942 | MS.gene28491:CDS |
| ATCACTCAAGTCATGGAAGA+GGG | 0.610181 | 8.4:-28506597 | MS.gene28491:CDS |
| GGTGCAAAATGGGCTTGAAG+GGG | 0.611042 | 8.4:-28506780 | MS.gene28491:CDS |
| GTAGTTAGCTCAATGCAGCT+TGG | 0.613218 | 8.4:-28506386 | MS.gene28491:CDS |
| TCTGAGGTATTAAGATGGGA+GGG | 0.638076 | 8.4:-28507240 | None:intergenic |
| GTGCAAAATGGGCTTGAAGG+GGG | 0.641754 | 8.4:-28506779 | MS.gene28491:CDS |
| GATTGCAAGAGGGATATATG+GGG | 0.687000 | 8.4:-28506950 | MS.gene28491:CDS |
| GTCGACAGATAAGAAAAGCG+AGG | 0.701787 | 8.4:-28506160 | MS.gene28491:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAATATAGAAACTTTTTC+AGG | - | chr8.4:28507126-28507145 | MS.gene28491:CDS | 20.0% |
| !!! | GTTTTATTTGTTGTTTCAAT+CGG | - | chr8.4:28506657-28506676 | MS.gene28491:CDS | 20.0% |
| !!! | TGAAGTTGTTAAAGTTATTT+TGG | - | chr8.4:28506375-28506394 | MS.gene28491:CDS | 20.0% |
| ! | TTACATTTCATTGAAGGATT+TGG | - | chr8.4:28506987-28507006 | MS.gene28491:CDS | 25.0% |
| !! | TATTAAAGAGCATACCAATA+GGG | - | chr8.4:28506261-28506280 | MS.gene28491:CDS | 25.0% |
| !! | TGATTTTGCTCTTAAAAATG+AGG | - | chr8.4:28507071-28507090 | MS.gene28491:CDS | 25.0% |
| !!! | GATTACTTATTTTGAAGAAG+AGG | - | chr8.4:28506546-28506565 | MS.gene28491:CDS | 25.0% |
| AAATAAAACTCCTCCGTAAA+AGG | + | chr8.4:28506646-28506665 | None:intergenic | 30.0% | |
| AAGAGAACTAATAACCCTAT+TGG | + | chr8.4:28506278-28506297 | None:intergenic | 30.0% | |
| AATAAAACTCCTCCGTAAAA+GGG | + | chr8.4:28506645-28506664 | None:intergenic | 30.0% | |
| GAATCAAGTGATTGTTAAGT+CGG | - | chr8.4:28506522-28506541 | MS.gene28491:CDS | 30.0% | |
| GATTTGCAATTTCTTCAACA+TGG | + | chr8.4:28506701-28506720 | None:intergenic | 30.0% | |
| GCTAATGATTGCACAAAAAT+GGG | - | chr8.4:28506154-28506173 | MS.gene28491:CDS | 30.0% | |
| TCATCAAAACTTTGCAAGTT+TGG | + | chr8.4:28506238-28506257 | None:intergenic | 30.0% | |
| TGCTAATGATTGCACAAAAA+TGG | - | chr8.4:28506153-28506172 | MS.gene28491:CDS | 30.0% | |
| TGGTACTTACATTTCATTGA+AGG | - | chr8.4:28506981-28507000 | MS.gene28491:CDS | 30.0% | |
| ! | GTATTAAAGAGCATACCAAT+AGG | - | chr8.4:28506260-28506279 | MS.gene28491:CDS | 30.0% |
| !! | ACTTTTTAAGGGATATGAGA+AGG | - | chr8.4:28506918-28506937 | MS.gene28491:CDS | 30.0% |
| !! | TTAGGAATTTTAAGGATGCT+GGG | - | chr8.4:28506617-28506636 | MS.gene28491:CDS | 30.0% |
| !!! | AAGTTATTTTGGATTGCAAG+AGG | - | chr8.4:28506386-28506405 | MS.gene28491:CDS | 30.0% |
| !!! | AGAAACTTTTTCAGGAACAT+TGG | - | chr8.4:28507134-28507153 | MS.gene28491:CDS | 30.0% |
| !!! | AGTTATTTTGGATTGCAAGA+GGG | - | chr8.4:28506387-28506406 | MS.gene28491:CDS | 30.0% |
| !!! | GGTGTCAAATGCAATTTTTT+TGG | - | chr8.4:28506771-28506790 | MS.gene28491:CDS | 30.0% |
| AATTACAAAACTCCAACGTC+TGG | + | chr8.4:28506471-28506490 | None:intergenic | 35.0% | |
| AGTTGAAATCACTCAAGTCA+TGG | - | chr8.4:28506743-28506762 | MS.gene28491:CDS | 35.0% | |
| CTCTTGAGAAATGTTTGAGA+CGG | - | chr8.4:28506491-28506510 | MS.gene28491:CDS | 35.0% | |
| GGATATGAGAAGGCTATAAA+GGG | - | chr8.4:28506928-28506947 | MS.gene28491:CDS | 35.0% | |
| TGAAGGATTTGGACAACATT+CGG | - | chr8.4:28506998-28507017 | MS.gene28491:CDS | 35.0% | |
| ! | GCAAGAGCTTAGGAATTTTA+AGG | - | chr8.4:28506609-28506628 | MS.gene28491:CDS | 35.0% |
| ! | GTTATTAGTTCTCTTGCTAC+TGG | - | chr8.4:28506283-28506302 | MS.gene28491:CDS | 35.0% |
| ! | TCTTGAGAAATGTTTGAGAC+GGG | - | chr8.4:28506492-28506511 | MS.gene28491:CDS | 35.0% |
| ! | TTGAAGAAGAGGTGCAAAAT+GGG | - | chr8.4:28506557-28506576 | MS.gene28491:CDS | 35.0% |
| ! | TTTGAAGAAGAGGTGCAAAA+TGG | - | chr8.4:28506556-28506575 | MS.gene28491:CDS | 35.0% |
| !! | CTTAGGAATTTTAAGGATGC+TGG | - | chr8.4:28506616-28506635 | MS.gene28491:CDS | 35.0% |
| !! | TAGGAATTTTAAGGATGCTG+GGG | - | chr8.4:28506618-28506637 | MS.gene28491:CDS | 35.0% |
| !!! | ATGGTGCAACTCACTTTTTA+AGG | - | chr8.4:28506906-28506925 | MS.gene28491:CDS | 35.0% |
| !!! | TGGTGCAACTCACTTTTTAA+GGG | - | chr8.4:28506907-28506926 | MS.gene28491:CDS | 35.0% |
| !!! | TTTTTTGGCTGCGTTTGTTT+CGG | - | chr8.4:28506786-28506805 | MS.gene28491:CDS | 35.0% |
| AATCACTCAAGTCATGGAAG+AGG | - | chr8.4:28506749-28506768 | MS.gene28491:CDS | 40.0% | |
| AGAAGGCTATAAAGGGACAA+AGG | - | chr8.4:28506935-28506954 | MS.gene28491:CDS | 40.0% | |
| AGGGAATTCAAGCAAGATGA+TGG | - | chr8.4:28506126-28506145 | MS.gene28491:CDS | 40.0% | |
| ATCACTCAAGTCATGGAAGA+GGG | - | chr8.4:28506750-28506769 | MS.gene28491:CDS | 40.0% | |
| GAAGGATTTGGACAACATTC+GGG | - | chr8.4:28506999-28507018 | MS.gene28491:CDS | 40.0% | |
| GAAGGCTATAAAGGGACAAA+GGG | - | chr8.4:28506936-28506955 | MS.gene28491:CDS | 40.0% | |
| GATTGCAAGAGGGATATATG+GGG | - | chr8.4:28506397-28506416 | MS.gene28491:CDS | 40.0% | |
| GGATTGCAAGAGGGATATAT+GGG | - | chr8.4:28506396-28506415 | MS.gene28491:CDS | 40.0% | |
| GGGATATGAGAAGGCTATAA+AGG | - | chr8.4:28506927-28506946 | MS.gene28491:CDS | 40.0% | |
| TCGGGTGCTTACAAACAAAT+TGG | - | chr8.4:28507017-28507036 | MS.gene28491:CDS | 40.0% | |
| TGAAGACATTGCAAGAGCTT+AGG | - | chr8.4:28506599-28506618 | MS.gene28491:CDS | 40.0% | |
| TGATAATAGTCTCCAGACGT+TGG | - | chr8.4:28506456-28506475 | MS.gene28491:CDS | 40.0% | |
| TGGATTGCAAGAGGGATATA+TGG | - | chr8.4:28506395-28506414 | MS.gene28491:CDS | 40.0% | |
| ! | AAACAAGGATTTGTTCGCGT+TGG | - | chr8.4:28506420-28506439 | MS.gene28491:CDS | 40.0% |
| ! | TTGCTACTGGTGTTGAAGTT+AGG | - | chr8.4:28506296-28506315 | MS.gene28491:CDS | 40.0% |
| !!! | TTCGGTGTTGATTTTCTCTG+TGG | - | chr8.4:28506804-28506823 | MS.gene28491:CDS | 40.0% |
| GAGGGATATATGGGGAAACA+AGG | - | chr8.4:28506405-28506424 | MS.gene28491:CDS | 45.0% | |
| GTAGTTAGCTCAATGCAGCT+TGG | - | chr8.4:28506961-28506980 | MS.gene28491:CDS | 45.0% | |
| GTCGACAGATAAGAAAAGCG+AGG | - | chr8.4:28507187-28507206 | MS.gene28491:CDS | 45.0% | |
| ! | AGGTGCAAAATGGGCTTGAA+GGG | - | chr8.4:28506566-28506585 | MS.gene28491:CDS | 45.0% |
| ! | TCAATCGGTTTATACGCAGC+AGG | - | chr8.4:28506672-28506691 | MS.gene28491:CDS | 45.0% |
| CATTCGGGTCGGTTGGAAAA+TGG | - | chr8.4:28506887-28506906 | MS.gene28491:CDS | 50.0% | |
| CGCAGCCAAAGCTGTTACAA+CGG | + | chr8.4:28506854-28506873 | None:intergenic | 50.0% | |
| GCAGCCAAAGCTGTTACAAC+GGG | + | chr8.4:28506853-28506872 | None:intergenic | 50.0% | |
| ! | CATTTTCCAACCGACCCGAA+TGG | + | chr8.4:28506889-28506908 | None:intergenic | 50.0% |
| ! | CGTTGTAACAGCTTTGGCTG+CGG | - | chr8.4:28506852-28506871 | MS.gene28491:CDS | 50.0% |
| ! | GAGGTGCAAAATGGGCTTGA+AGG | - | chr8.4:28506565-28506584 | MS.gene28491:CDS | 50.0% |
| ! | GGTGCAAAATGGGCTTGAAG+GGG | - | chr8.4:28506567-28506586 | MS.gene28491:CDS | 50.0% |
| ! | GTGCAAAATGGGCTTGAAGG+GGG | - | chr8.4:28506568-28506587 | MS.gene28491:CDS | 50.0% |
| GCCAAAGCTGTTACAACGGG+CGG | + | chr8.4:28506850-28506869 | None:intergenic | 55.0% | |
| GTTGGCTGTTCCATTCGGGT+CGG | - | chr8.4:28506876-28506895 | MS.gene28491:CDS | 55.0% | |
| TCCGCCCGTTGTAACAGCTT+TGG | - | chr8.4:28506846-28506865 | MS.gene28491:CDS | 55.0% | |
| ! | GGATGCTGGGGACCCTTTTA+CGG | - | chr8.4:28506630-28506649 | MS.gene28491:CDS | 55.0% |
| GCTGTTCCATTCGGGTCGGT+TGG | - | chr8.4:28506880-28506899 | MS.gene28491:CDS | 60.0% | |
| ! | AACAGCTTTGGCTGCGGCGT+TGG | - | chr8.4:28506858-28506877 | MS.gene28491:CDS | 60.0% |
| ! | TGCTGGGGACCCTTTTACGG+AGG | - | chr8.4:28506633-28506652 | MS.gene28491:CDS | 60.0% |
| !! | CGGCGTTGGCTGTTCCATTC+GGG | - | chr8.4:28506872-28506891 | MS.gene28491:CDS | 60.0% |
| !! | GCGGCGTTGGCTGTTCCATT+CGG | - | chr8.4:28506871-28506890 | MS.gene28491:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 28506121 | 28507248 | 28506121 | ID=MS.gene28491 |
| chr8.4 | mRNA | 28506121 | 28507248 | 28506121 | ID=MS.gene28491.t1;Parent=MS.gene28491 |
| chr8.4 | exon | 28506121 | 28507248 | 28506121 | ID=MS.gene28491.t1.exon1;Parent=MS.gene28491.t1 |
| chr8.4 | CDS | 28506121 | 28507248 | 28506121 | ID=cds.MS.gene28491.t1;Parent=MS.gene28491.t1 |
| Gene Sequence |
| Protein sequence |
