AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene30733


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30733.t1 MTR_3g073730 98.182 660 12 0 1 660 1 660 0.0 1325
MS.gene30733.t1 MTR_5g061860 76.235 648 144 4 19 658 7 652 0.0 999
MS.gene30733.t1 MTR_5g061860 76.277 548 122 3 19 558 7 554 0.0 839
MS.gene30733.t1 MTR_3g087740 62.673 651 227 5 15 657 12 654 0.0 815
MS.gene30733.t1 MTR_5g061880 51.880 665 302 7 3 660 2 655 0.0 680
MS.gene30733.t1 MTR_3g087730 51.946 668 295 11 2 658 6 658 0.0 660
MS.gene30733.t1 MTR_3g073780 51.932 647 286 6 23 652 13 651 0.0 655
MS.gene30733.t1 MTR_2g008470 52.073 603 276 5 52 649 54 648 0.0 609
MS.gene30733.t1 MTR_2g008470 52.073 603 276 5 52 649 73 667 0.0 609
MS.gene30733.t1 MTR_3g073780 53.002 583 249 6 23 588 13 587 0.0 602
MS.gene30733.t1 MTR_3g073780 53.888 553 232 5 23 558 13 559 0.0 580
MS.gene30733.t1 MTR_7g095430 49.308 578 285 3 75 652 65 634 0.0 555
MS.gene30733.t1 MTR_1g071530 44.961 645 337 6 17 652 2 637 0.0 538
MS.gene30733.t1 MTR_2g102243 47.871 587 296 4 75 660 70 647 0.0 535
MS.gene30733.t1 MTR_4g084640 42.986 663 350 8 5 660 3 644 4.13e-179 524
MS.gene30733.t1 MTR_4g084620 44.122 621 329 6 39 651 22 632 1.26e-176 518
MS.gene30733.t1 MTR_4g011970 45.785 605 320 3 56 660 58 654 2.33e-175 514
MS.gene30733.t1 MTR_7g095430 50.000 510 247 3 77 586 67 568 1.29e-168 494
MS.gene30733.t1 MTR_2g102243 49.708 513 248 4 75 586 70 573 7.39e-168 493
MS.gene30733.t1 MTR_6g086170 42.808 577 316 6 77 652 60 623 1.03e-159 474
MS.gene30733.t1 MTR_7g022870 37.153 576 335 11 88 655 83 639 4.32e-111 350
MS.gene30733.t1 MTR_7g022870 37.525 509 291 11 88 588 83 572 1.19e-95 306
MS.gene30733.t1 MTR_6g024420 49.438 89 34 1 279 367 89 166 2.39e-21 92.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30733.t1 AT5G10180 61.695 637 232 4 26 656 46 676 0.0 798
MS.gene30733.t1 AT1G77990 63.033 633 212 4 30 650 42 664 0.0 780
MS.gene30733.t1 AT4G08620 53.239 633 269 6 38 652 17 640 0.0 647
MS.gene30733.t1 AT1G22150 52.904 637 277 6 38 659 26 654 0.0 645
MS.gene30733.t1 AT1G22150 52.904 637 277 6 38 659 26 654 0.0 645
MS.gene30733.t1 AT1G22150 52.904 637 277 6 38 659 26 654 0.0 645
MS.gene30733.t1 AT1G78000 54.041 631 267 6 38 652 22 645 0.0 631
MS.gene30733.t1 AT1G78000 54.041 631 267 6 38 652 22 645 0.0 631
MS.gene30733.t1 AT1G78000 54.041 631 267 6 38 652 22 645 0.0 631
MS.gene30733.t1 AT1G78000 54.561 592 246 6 38 613 22 606 0.0 592
MS.gene30733.t1 AT1G22150 53.357 566 242 5 38 588 26 584 0.0 580
MS.gene30733.t1 AT3G51895 45.497 644 337 6 14 652 3 637 0.0 573
MS.gene30733.t1 AT3G51895 45.497 644 337 6 14 652 48 682 0.0 573
MS.gene30733.t1 AT1G78000 54.737 570 235 6 38 591 22 584 0.0 571
MS.gene30733.t1 AT3G15990 45.685 591 311 5 60 649 59 640 3.38e-179 524
MS.gene30733.t1 AT1G23090 46.312 583 303 5 75 656 51 624 4.77e-174 510
MS.gene30733.t1 AT1G78000 57.675 456 186 3 136 591 1 449 1.69e-170 495
MS.gene30733.t1 AT4G02700 44.695 622 329 5 37 652 15 627 8.20e-169 498
MS.gene30733.t1 AT1G78000 56.198 484 191 4 38 505 22 500 4.37e-167 488
MS.gene30733.t1 AT5G19600 42.660 579 309 5 77 652 65 623 1.72e-162 481
MS.gene30733.t1 AT1G23090 45.149 505 263 6 153 656 1 492 1.48e-141 422
MS.gene30733.t1 AT1G23090 45.149 505 263 6 153 656 1 492 1.48e-141 422
MS.gene30733.t1 AT1G23090 45.149 505 263 6 153 656 1 492 1.48e-141 422
MS.gene30733.t1 AT3G12520 34.211 608 376 10 53 655 28 616 2.21e-112 352
MS.gene30733.t1 AT3G12520 34.211 608 376 10 53 655 44 632 4.51e-112 352
MS.gene30733.t1 AT5G13550 34.106 604 382 8 53 655 57 645 2.87e-108 342
MS.gene30733.t1 AT3G12520 34.122 507 318 8 53 558 44 535 6.04e-91 293

Find 120 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACACTTTGTGGATAAAAT+TGG 0.172279 3.1:-60348601 MS.gene30733:CDS
GCTTGCATTGGTGCTTTCTT+TGG 0.243818 3.1:-60350979 MS.gene30733:CDS
ATAATCCTCTCTGCACTTCC+TGG 0.253063 3.1:-60351060 MS.gene30733:CDS
GTTGGACAAGCAGCTAAAAT+TGG 0.258087 3.1:-60352080 MS.gene30733:CDS
GCAAAACTTGATCCTCAATA+TGG 0.263394 3.1:-60353405 MS.gene30733:CDS
ATCTGATGTGGTTTCTGTTT+TGG 0.265706 3.1:-60352856 MS.gene30733:CDS
TAAGAGAAGCTTGCTATATA+TGG 0.265917 3.1:-60351026 MS.gene30733:CDS
CTCCATCATCAAATTCCTTC+TGG 0.270650 3.1:-60352816 MS.gene30733:CDS
TTGTCACATGCTGCACTTGT+AGG 0.290645 3.1:-60352957 MS.gene30733:CDS
TTGATGAATGTTGATACTTC+TGG 0.296180 3.1:-60348991 MS.gene30733:CDS
TTCCATAGAGGAGGCGGATT+TGG 0.301049 3.1:+60353745 None:intergenic
GTTCACCATTGAGTTGTAAT+TGG 0.307870 3.1:+60352105 None:intergenic
CACCAAATCCGCCTCCTCTA+TGG 0.308858 3.1:-60353747 MS.gene30733:CDS
TTGTTTGTATCGGTAGAAAT+TGG 0.326079 3.1:-60350952 MS.gene30733:CDS
GTTCCTCCTCTTATCTATGC+TGG 0.328913 3.1:-60353260 MS.gene30733:CDS
GGTGAATTGAGCTTGGATTA+AGG 0.334344 3.1:+60352126 None:intergenic
GAGGATTATAGAAGCAAGTA+TGG 0.339449 3.1:+60351074 None:intergenic
GATTGGTCTTCAGCAGCTTA+AGG 0.344368 3.1:-60352910 MS.gene30733:CDS
TGGATAAAATTGGGAAAGAA+TGG 0.350661 3.1:-60348591 MS.gene30733:CDS
ATTAAAGGATACCATCTAGA+TGG 0.353006 3.1:-60351898 MS.gene30733:CDS
TTTCTTTGTTCCCATCTAGA+TGG 0.377693 3.1:+60351887 None:intergenic
AAGGGTCCAAGCTGTAATAT+TGG 0.384678 3.1:-60349136 MS.gene30733:CDS
CGACCTGGGATAGAAGTTCT+TGG 0.386434 3.1:-60349464 MS.gene30733:CDS
CAGCAGCTTAAGGGGTTGCT+TGG 0.391696 3.1:-60352900 MS.gene30733:CDS
TTTACTGTAACATTATTTGC+TGG 0.393090 3.1:-60353116 MS.gene30733:CDS
GCTTAAAGTGGCACACTTTG+TGG 0.393127 3.1:-60348611 MS.gene30733:CDS
AGCAGCTTAAGGGGTTGCTT+GGG 0.395989 3.1:-60352899 MS.gene30733:CDS
CACACTTTGTGGATAAAATT+GGG 0.397337 3.1:-60348600 MS.gene30733:CDS
GAAATGTTAGCAATGGGTTG+TGG 0.411356 3.1:-60351868 MS.gene30733:CDS
ATGGGTTGTGGGAACATTGC+AGG 0.411452 3.1:-60351856 MS.gene30733:CDS
ATTGGTCTTCAGCAGCTTAA+GGG 0.412152 3.1:-60352909 MS.gene30733:CDS
TGCTGCACTTGTAGGATTCA+TGG 0.416473 3.1:-60352949 MS.gene30733:CDS
AGAAACCACATCAGATTTGT+TGG 0.419815 3.1:+60352863 None:intergenic
TTTGACTTCCTTGCTTGCAT+TGG 0.419990 3.1:-60350991 MS.gene30733:CDS
TAAAGAAAGTCAAACTACTA+AGG 0.422266 3.1:-60349160 MS.gene30733:CDS
TAATCATCATGATTTAAATC+TGG 0.422388 3.1:+60353152 None:intergenic
TATCTAATGTTGCAGAGTAT+TGG 0.423525 3.1:-60353441 MS.gene30733:intron
AAGATACTCATCAAATAGAT+AGG 0.430829 3.1:-60353789 MS.gene30733:CDS
CCTCTTATCTATGCTGGGAT+GGG 0.437455 3.1:-60353254 MS.gene30733:CDS
AGTTCAAGAGAAATTGCAAT+TGG 0.438871 3.1:-60353230 MS.gene30733:CDS
TTCCTCCTCTTATCTATGCT+GGG 0.439957 3.1:-60353259 MS.gene30733:CDS
CCATAAATCTTGCAAACAAA+AGG 0.446827 3.1:+60352372 None:intergenic
TACAAGCACTCCAGGCATCT+TGG 0.452819 3.1:-60349390 MS.gene30733:CDS
ACTTCATGCTATGTTGCAAC+TGG 0.454245 3.1:-60351826 MS.gene30733:intron
GGATAAAATTGGGAAAGAAT+GGG 0.456057 3.1:-60348590 MS.gene30733:CDS
TGTAATTGGTGAATTGAGCT+TGG 0.462279 3.1:+60352119 None:intergenic
CTTTGGTGTCTTGTTTGTAT+CGG 0.463347 3.1:-60350962 MS.gene30733:CDS
TCCTCTTATCTATGCTGGGA+TGG 0.468067 3.1:-60353255 MS.gene30733:CDS
AATATGAGAGTCACAGAAGA+TGG 0.472056 3.1:-60353826 MS.gene30733:CDS
ATCAACCACTTTGTGACATA+AGG 0.473180 3.1:+60353175 None:intergenic
CCCATCCCAGCATAGATAAG+AGG 0.483477 3.1:+60353254 None:intergenic
AAATGTTAGCAATGGGTTGT+GGG 0.484005 3.1:-60351867 MS.gene30733:CDS
AACAAAGAAATGTTAGCAAT+GGG 0.485559 3.1:-60351874 MS.gene30733:CDS
TGTGAATTACTACCCACCTT+GGG 0.486493 3.1:+60348635 None:intergenic
GCAGGTGCAGCCATCATGAT+TGG 0.487827 3.1:-60352927 MS.gene30733:CDS
TCTCTTATGTCAATTAATCC+AGG 0.492178 3.1:+60351042 None:intergenic
CTCCAGAAGGAATTTGATGA+TGG 0.492717 3.1:+60352814 None:intergenic
TTGCAGGTTGGGATTTCTTG+TGG 0.498105 3.1:-60352985 MS.gene30733:intron
TTACCTTTCTCTTACAACAT+TGG 0.501627 3.1:+60349328 None:intergenic
ATAGTAAAACATGTCAAAAG+AGG 0.504882 3.1:-60352149 MS.gene30733:CDS
CCCATGGCTACAAGCACTCC+AGG 0.507925 3.1:-60349398 MS.gene30733:CDS
GACACTAGAGGAGCAATAGC+TGG 0.513276 3.1:+60352230 None:intergenic
TACTTCTGGAATTATAGTAC+TGG 0.514900 3.1:-60348977 MS.gene30733:CDS
CCTTACTGTTTCTGAAGCTG+TGG 0.516525 3.1:-60348563 MS.gene30733:CDS
ATGCCAATGTTGTAAGAGAA+AGG 0.517333 3.1:-60349331 MS.gene30733:intron
CTCTTATCTATGCTGGGATG+GGG 0.521433 3.1:-60353253 MS.gene30733:CDS
CAACTCAATGGTGAACATGT+TGG 0.525684 3.1:-60352098 MS.gene30733:CDS
TTGGTCATTCGTATAAGCTC+TGG 0.525879 3.1:-60349371 MS.gene30733:CDS
GCCTGGAGTGCTTGTAGCCA+TGG 0.529683 3.1:+60349397 None:intergenic
TCACAGAAAGCTTGTGTCGT+TGG 0.531364 3.1:+60349434 None:intergenic
TGCTAGTCTAAGCATACCTC+AGG 0.531561 3.1:-60353554 MS.gene30733:intron
AGCAGTGACACTACAGCTAC+TGG 0.536402 3.1:+60353206 None:intergenic
GAACAAAGAAATGTTAGCAA+TGG 0.536518 3.1:-60351875 MS.gene30733:CDS
ATTCACCAATTACAACTCAA+TGG 0.538027 3.1:-60352110 MS.gene30733:CDS
AGAAAGCACCAATGCAAGCA+AGG 0.538123 3.1:+60350983 None:intergenic
CCACAGCTTCAGAAACAGTA+AGG 0.539809 3.1:+60348563 None:intergenic
TGTGTTTAGAATTGTTTACA+AGG 0.543320 3.1:-60351119 MS.gene30733:CDS
TTGTGAATTACTACCCACCT+TGG 0.545137 3.1:+60348634 None:intergenic
GGTCAGCGAATTTATAAGAC+AGG 0.550450 3.1:+60348533 None:intergenic
ATACGAATGACCAAGATGCC+TGG 0.556493 3.1:+60349380 None:intergenic
TACCTACACAAGCCATATTG+AGG 0.559998 3.1:+60353393 None:intergenic
AAAGAAAGTCAAACTACTAA+GGG 0.561981 3.1:-60349159 MS.gene30733:CDS
TTGGTCTTCAGCAGCTTAAG+GGG 0.565521 3.1:-60352908 MS.gene30733:CDS
TTAAAGGATACCATCTAGAT+GGG 0.565733 3.1:-60351897 MS.gene30733:CDS
ATCAGTATCAAATATTGTGA+TGG 0.566934 3.1:-60351157 MS.gene30733:CDS
CCAAGCTGTAATATTGGACA+TGG 0.568325 3.1:-60349130 MS.gene30733:CDS
CCATGTCCAATATTACAGCT+TGG 0.570097 3.1:+60349130 None:intergenic
CTACCAAGAACTTCTATCCC+AGG 0.571095 3.1:+60349461 None:intergenic
AGTAATTCACAAGCTTAAAG+TGG 0.571416 3.1:-60348623 MS.gene30733:CDS
TACTGGAGGAACTGCACAAG+AGG 0.577069 3.1:-60348960 MS.gene30733:CDS
AAAGTCAAACTACTAAGGGA+AGG 0.579628 3.1:-60349155 MS.gene30733:CDS
CACAAGAGGTTGCTCTCCCG+TGG 0.584272 3.1:-60348946 MS.gene30733:CDS
AAAGCACTTACTTCTCCAGA+AGG 0.591449 3.1:+60352801 None:intergenic
AAGTCAAACTACTAAGGGAA+GGG 0.596925 3.1:-60349154 MS.gene30733:CDS
TTATAGGAAGCAATGGCTGT+TGG 0.598367 3.1:-60351937 MS.gene30733:intron
TCTCATATTGAAAGCATCAG+AGG 0.599209 3.1:+60353840 None:intergenic
ATCTTCCTTATGTCACAAAG+TGG 0.602945 3.1:-60353180 MS.gene30733:CDS
CTTCACCAACAAATCTGATG+TGG 0.603053 3.1:-60352868 MS.gene30733:CDS
ATTGTTCCAGAATACTCAAG+TGG 0.606100 3.1:-60349203 MS.gene30733:intron
TTCTGGAATTATAGTACTGG+AGG 0.606870 3.1:-60348974 MS.gene30733:CDS
TGCTATGGTGAACCCAAGGT+GGG 0.608813 3.1:-60348647 MS.gene30733:CDS
CTTCCAATGACAAAATTCAG+AGG 0.616131 3.1:+60352410 None:intergenic
CCTGGAGTGCTTGTAGCCAT+GGG 0.620616 3.1:+60349398 None:intergenic
CTCATATTGAAAGCATCAGA+GGG 0.624348 3.1:+60353841 None:intergenic
TGATGTTAGTCAATATCCCA+TGG 0.624539 3.1:-60349414 MS.gene30733:CDS
TTGTTCCAGAATACTCAAGT+GGG 0.625900 3.1:-60349202 MS.gene30733:intron
TTGCTATGGTGAACCCAAGG+TGG 0.625914 3.1:-60348648 MS.gene30733:CDS
ATAGAAGCAAGTATGGCCAC+AGG 0.635499 3.1:+60351081 None:intergenic
GCACTTGTAGGATTCATGGC+AGG 0.636916 3.1:-60352945 MS.gene30733:CDS
TTCCAATGACAAAATTCAGA+GGG 0.638852 3.1:+60352411 None:intergenic
ATCCCAGCATAGATAAGAGG+AGG 0.642242 3.1:+60353257 None:intergenic
GTAATACAATCAATTCGACC+TGG 0.650323 3.1:-60349479 MS.gene30733:CDS
CTGCTGAAGACCAATCATGA+TGG 0.650508 3.1:+60352917 None:intergenic
TAATACAATCAATTCGACCT+GGG 0.657689 3.1:-60349478 MS.gene30733:CDS
TTGGTTTCCAGACACAAGTG+TGG 0.667826 3.1:-60353282 MS.gene30733:intron
GATAATATAACTGACACTAG+AGG 0.681566 3.1:+60352218 None:intergenic
AGTTTGCTATGGTGAACCCA+AGG 0.691933 3.1:-60348651 MS.gene30733:CDS
GCTGTTATATTACACACCTG+TGG 0.711496 3.1:-60351097 MS.gene30733:CDS
ATCAAATAGATAGGACACAG+TGG 0.720900 3.1:-60353780 MS.gene30733:CDS
TTAATCCAGGAAGTGCAGAG+AGG 0.761072 3.1:+60351055 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - chr3.1:60352256-60352275 MS.gene30733:CDS 0.0%
!!! TATTTTATTTTTTTATAAAT+TGG + chr3.1:60351076-60351095 None:intergenic 0.0%
!! ATATGAATTATTTATTTGAT+TGG - chr3.1:60349080-60349099 MS.gene30733:intron 10.0%
!! TAAATATCTAAATGAAAATT+TGG - chr3.1:60352847-60352866 MS.gene30733:CDS 10.0%
!!! TATAGATTTTATTAAAATTG+TGG - chr3.1:60353610-60353629 MS.gene30733:CDS 10.0%
!!! TATTTTATTTGTTTTATTGT+TGG - chr3.1:60351133-60351152 MS.gene30733:CDS 10.0%
!!! TTTTTATTTTTTTTTAGAGT+TGG + chr3.1:60352554-60352573 None:intergenic 10.0%
!! AACGAAATTATTGATATTTA+TGG - chr3.1:60351868-60351887 MS.gene30733:CDS 15.0%
!! AACTTTAACCAATAAATTAA+CGG - chr3.1:60351675-60351694 MS.gene30733:intron 15.0%
!! ACGAAATTATTGATATTTAT+GGG - chr3.1:60351869-60351888 MS.gene30733:CDS 15.0%
!! GTATATATTCAACAAAATTA+TGG + chr3.1:60353589-60353608 None:intergenic 15.0%
!! TAAAGACAATTAACAAAAAA+GGG - chr3.1:60349859-60349878 MS.gene30733:intron 15.0%
!! TAACTAAAATATTTGTAAAG+TGG + chr3.1:60352031-60352050 None:intergenic 15.0%
!! TTCTAAACATATATGAAAAT+AGG + chr3.1:60351512-60351531 None:intergenic 15.0%
!! TTGCAATTACAATATATTTA+GGG + chr3.1:60349649-60349668 None:intergenic 15.0%
!! TTTGCAATTACAATATATTT+AGG + chr3.1:60349650-60349669 None:intergenic 15.0%
!!! AAAAATTTTGAGGTTTAATT+TGG - chr3.1:60350418-60350437 MS.gene30733:intron 15.0%
!!! AAAATTTTGAGGTTTAATTT+GGG - chr3.1:60350419-60350438 MS.gene30733:intron 15.0%
!!! GAAATGAAATAGTATATTTT+TGG - chr3.1:60350035-60350054 MS.gene30733:intron 15.0%
!!! GATCTACTTTTATTTATTTT+AGG + chr3.1:60350665-60350684 None:intergenic 15.0%
!!! TATTTATTTTCCTTTTATTG+TGG + chr3.1:60352833-60352852 None:intergenic 15.0%
!!! TTTAGTTTCTAAAAATTTTG+AGG - chr3.1:60350408-60350427 MS.gene30733:intron 15.0%
!! AAACATATATGAAAATAGGT+TGG + chr3.1:60351508-60351527 None:intergenic 20.0%
!! AACATATATGAAAATAGGTT+GGG + chr3.1:60351507-60351526 None:intergenic 20.0%
!! AAGAATACAATAAAGAAAAG+GGG - chr3.1:60352386-60352405 MS.gene30733:CDS 20.0%
!! AATTATTGGTAAAAAGACAA+AGG - chr3.1:60352105-60352124 MS.gene30733:CDS 20.0%
!! ACAAGAATACAATAAAGAAA+AGG - chr3.1:60352384-60352403 MS.gene30733:CDS 20.0%
!! ACTTTAACCAATAAATTAAC+GGG - chr3.1:60351676-60351695 MS.gene30733:intron 20.0%
!! AGATAATTAACAGTTAAATG+AGG + chr3.1:60349336-60349355 None:intergenic 20.0%
!! ATAGACTAAAAATGAAATTC+TGG + chr3.1:60351731-60351750 None:intergenic 20.0%
!! CAAGAATACAATAAAGAAAA+GGG - chr3.1:60352385-60352404 MS.gene30733:CDS 20.0%
!! GTAAAGACAATTAACAAAAA+AGG - chr3.1:60349858-60349877 MS.gene30733:intron 20.0%
!! TAATCATCATGATTTAAATC+TGG + chr3.1:60349232-60349251 None:intergenic 20.0%
!! TTTGTTTATTATATTGACAG+TGG - chr3.1:60349945-60349964 MS.gene30733:intron 20.0%
!!! AAAAACTTGTTATTCTTAAG+TGG + chr3.1:60348675-60348694 None:intergenic 20.0%
!!! AAATGAAAATTTGGTTTTGT+AGG - chr3.1:60352856-60352875 MS.gene30733:CDS 20.0%
!!! AATTTAATTTAATCTGTTGC+AGG - chr3.1:60349380-60349399 MS.gene30733:CDS 20.0%
!!! AGTTTAACTTAATAGATTCA+AGG + chr3.1:60351659-60351678 None:intergenic 20.0%
!!! CATCAATGAAATTGTTTTTA+AGG + chr3.1:60352643-60352662 None:intergenic 20.0%
!!! TGTTTTTCTTTACTCTTTTT+AGG + chr3.1:60351810-60351829 None:intergenic 20.0%
!!! TTTATATCTTTATCTTTTGC+TGG + chr3.1:60350811-60350830 None:intergenic 20.0%
!!! TTTTTACCAATAATTTTGAC+CGG + chr3.1:60352100-60352119 None:intergenic 20.0%
!!! TTTTTGAACAAACTAAGTAT+TGG + chr3.1:60348759-60348778 None:intergenic 20.0%
! AAAGAAACAAAAAGCTATTC+TGG - chr3.1:60350125-60350144 MS.gene30733:intron 25.0%
! AAAGAAAGTCAAACTACTAA+GGG - chr3.1:60353222-60353241 MS.gene30733:CDS 25.0%
! AAATTCAACGAATCATTCTT+AGG + chr3.1:60351008-60351027 None:intergenic 25.0%
! AACAAAGAAATGTTAGCAAT+GGG - chr3.1:60350507-60350526 MS.gene30733:intron 25.0%
! AAGATACTCATCAAATAGAT+AGG - chr3.1:60348592-60348611 MS.gene30733:CDS 25.0%
! AATCAGAAATATTGTACTAG+TGG + chr3.1:60350076-60350095 None:intergenic 25.0%
! AATTAATCACCGAAAAAACA+TGG - chr3.1:60351037-60351056 MS.gene30733:CDS 25.0%
! AATTCAACGAATCATTCTTA+GGG + chr3.1:60351007-60351026 None:intergenic 25.0%
! AGAAAGAAAAAACATGTTCA+TGG + chr3.1:60348722-60348741 None:intergenic 25.0%
! AGAATACAATAAAGAAAAGG+GGG - chr3.1:60352387-60352406 MS.gene30733:CDS 25.0%
! AGAGTAAAGAAAAACATTAC+AGG - chr3.1:60351814-60351833 MS.gene30733:intron 25.0%
! ATAATACCGGTCAAAATTAT+TGG - chr3.1:60352091-60352110 MS.gene30733:CDS 25.0%
! ATAGTAAAACATGTCAAAAG+AGG - chr3.1:60350232-60350251 MS.gene30733:intron 25.0%
! ATATCCAAAGCAGATAAAAA+TGG - chr3.1:60350202-60350221 MS.gene30733:intron 25.0%
! ATCAGTATCAAATATTGTGA+TGG - chr3.1:60351224-60351243 MS.gene30733:intron 25.0%
! CTCATATAACTTCAACTAAA+CGG - chr3.1:60350928-60350947 MS.gene30733:intron 25.0%
! GAAATTCTGGATATTTATAG+AGG + chr3.1:60351718-60351737 None:intergenic 25.0%
! GTATATAGTACCACAATAAA+AGG - chr3.1:60352820-60352839 MS.gene30733:CDS 25.0%
! GTTTAGATTATCGACAAATT+TGG + chr3.1:60353654-60353673 None:intergenic 25.0%
! TAAAGAAAGTCAAACTACTA+AGG - chr3.1:60353221-60353240 MS.gene30733:CDS 25.0%
! TAAGTAACCCGTTAATTTAT+TGG + chr3.1:60351686-60351705 None:intergenic 25.0%
! TAATTGTGAATATATACCTG+AGG + chr3.1:60348846-60348865 None:intergenic 25.0%
! TAGTTAACTATACCTATCAT+GGG - chr3.1:60352045-60352064 MS.gene30733:intron 25.0%
! TATCCAAAGCAGATAAAAAT+GGG - chr3.1:60350203-60350222 MS.gene30733:intron 25.0%
! TCTATCAAAGAAAATGTGTA+AGG + chr3.1:60353369-60353388 None:intergenic 25.0%
! TTAGTTAACTATACCTATCA+TGG - chr3.1:60352044-60352063 MS.gene30733:intron 25.0%
! TTGAGTTTCTGATTATTTCA+GGG - chr3.1:60350100-60350119 MS.gene30733:intron 25.0%
! TTTAATTCTTAAACACTTGC+AGG - chr3.1:60351156-60351175 MS.gene30733:CDS 25.0%
! TTTACTGTAACATTATTTGC+TGG - chr3.1:60349265-60349284 MS.gene30733:intron 25.0%
!! AGATCTTTTGCTTCAATTAA+AGG - chr3.1:60350468-60350487 MS.gene30733:intron 25.0%
!! ATTATTCTAGAAGTGAATTC+TGG + chr3.1:60350710-60350729 None:intergenic 25.0%
!! GGGTCATAAGTTATAAATTT+TGG - chr3.1:60349879-60349898 MS.gene30733:intron 25.0%
!! TAATTGAAGTGAAGTACTAA+AGG - chr3.1:60350726-60350745 MS.gene30733:intron 25.0%
!! TATAATATATTGCATTGACG+TGG - chr3.1:60353500-60353519 MS.gene30733:intron 25.0%
!! TATTTATGCATCTGAAACAT+TGG + chr3.1:60348890-60348909 None:intergenic 25.0%
!! TGTGTTTAGAATTGTTTACA+AGG - chr3.1:60351262-60351281 MS.gene30733:intron 25.0%
!! TTTGAGTTTCTGATTATTTC+AGG - chr3.1:60350099-60350118 MS.gene30733:intron 25.0%
!!! AAGTATTCACCATGTTTTTT+CGG + chr3.1:60351049-60351068 None:intergenic 25.0%
!!! AAGTGCTTTTTTCATTTTCT+AGG - chr3.1:60349594-60349613 MS.gene30733:intron 25.0%
!!! AGGTTTAATTTGGGTTTTAT+AGG - chr3.1:60350428-60350447 MS.gene30733:intron 25.0%
!!! CATGTTTTTTCTTTCTTTAG+TGG - chr3.1:60348726-60348745 MS.gene30733:intron 25.0%
!!! GTAATTAGTTTTTTCCATAG+AGG + chr3.1:60348651-60348670 None:intergenic 25.0%
!!! TGTTTGGGAATTTTAAGAAA+AGG + chr3.1:60351481-60351500 None:intergenic 25.0%
!!! TTTAAAGATGATTTTCTAGC+AGG - chr3.1:60348795-60348814 MS.gene30733:intron 25.0%
AAATCCATGCCAAATTATGA+TGG + chr3.1:60352169-60352188 None:intergenic 30.0%
AAGTGAGTTCCATCATAATT+TGG - chr3.1:60352157-60352176 MS.gene30733:CDS 30.0%
AATTTAATCTGTTGCAGGTT+GGG - chr3.1:60349385-60349404 MS.gene30733:CDS 30.0%
ACAAAGTCTCTTCGAATAAA+AGG - chr3.1:60352706-60352725 MS.gene30733:intron 30.0%
AGTAATTCACAAGCTTAAAG+TGG - chr3.1:60353758-60353777 MS.gene30733:CDS 30.0%
AGTTAACTATACCTATCATG+GGG - chr3.1:60352046-60352065 MS.gene30733:intron 30.0%
AGTTCAAGAGAAATTGCAAT+TGG - chr3.1:60349151-60349170 MS.gene30733:CDS 30.0%
ATAAAATCAGCCTTCTTAAG+TGG - chr3.1:60350975-60350994 MS.gene30733:CDS 30.0%
ATCCAAAGCAGATAAAAATG+GGG - chr3.1:60350204-60350223 MS.gene30733:intron 30.0%
ATCCACTAGTGTAATAATAC+CGG - chr3.1:60352078-60352097 MS.gene30733:CDS 30.0%
ATCTCCAATGGAATAGATTA+TGG - chr3.1:60352227-60352246 MS.gene30733:CDS 30.0%
ATTAAAGGATACCATCTAGA+TGG - chr3.1:60350483-60350502 MS.gene30733:intron 30.0%
ATTCACCAATTACAACTCAA+TGG - chr3.1:60350271-60350290 MS.gene30733:intron 30.0%
CACACTTTGTGGATAAAATT+GGG - chr3.1:60353781-60353800 MS.gene30733:CDS 30.0%
CCATAAATCTTGCAAACAAA+AGG + chr3.1:60350012-60350031 None:intergenic 30.0%
CGTTTAGTTGAAGTTATATG+AGG + chr3.1:60350930-60350949 None:intergenic 30.0%
GAACAAAGAAATGTTAGCAA+TGG - chr3.1:60350506-60350525 MS.gene30733:intron 30.0%
GATAATATAACTGACACTAG+AGG + chr3.1:60350166-60350185 None:intergenic 30.0%
GGATAAAATTGGGAAAGAAT+GGG - chr3.1:60353791-60353810 MS.gene30733:CDS 30.0%
TAATACAATCAATTCGACCT+GGG - chr3.1:60352903-60352922 MS.gene30733:CDS 30.0%
TAATTTAATCTGTTGCAGGT+TGG - chr3.1:60349384-60349403 MS.gene30733:CDS 30.0%
TATATGAGACCATCTCATAT+AGG + chr3.1:60352487-60352506 None:intergenic 30.0%
TATCTAATGTTGCAGAGTAT+TGG - chr3.1:60348940-60348959 MS.gene30733:CDS 30.0%
TCTCTTATGTCAATTAATCC+AGG + chr3.1:60351342-60351361 None:intergenic 30.0%
TCTTAAACATGTGTGTAAAC+TGG + chr3.1:60351620-60351639 None:intergenic 30.0%
TGGATAAAATTGGGAAAGAA+TGG - chr3.1:60353790-60353809 MS.gene30733:CDS 30.0%
TTAAAGGATACCATCTAGAT+GGG - chr3.1:60350484-60350503 MS.gene30733:intron 30.0%
TTACCTTTCTCTTACAACAT+TGG + chr3.1:60353056-60353075 None:intergenic 30.0%
TTCCAATGACAAAATTCAGA+GGG + chr3.1:60349973-60349992 None:intergenic 30.0%
TTGATGAATGTTGATACTTC+TGG - chr3.1:60353390-60353409 MS.gene30733:intron 30.0%
! AAGGTGTTAAATCTGAAGTT+GGG - chr3.1:60352431-60352450 MS.gene30733:intron 30.0%
! AGATTTAACACCTTCTGAAA+AGG + chr3.1:60352425-60352444 None:intergenic 30.0%
! TATACCAAAACCTTTTCAGA+AGG - chr3.1:60352412-60352431 MS.gene30733:CDS 30.0%
! TTGTTTGTATCGGTAGAAAT+TGG - chr3.1:60351429-60351448 MS.gene30733:intron 30.0%
!! CCTTTTGTTTGCAAGATTTA+TGG - chr3.1:60350009-60350028 MS.gene30733:intron 30.0%
!! TAAGAGAAGCTTGCTATATA+TGG - chr3.1:60351355-60351374 MS.gene30733:intron 30.0%
!! TACTTCTGGAATTATAGTAC+TGG - chr3.1:60353404-60353423 MS.gene30733:CDS 30.0%
!!! ATTAGTTTTTTCCATAGAGG+AGG + chr3.1:60348648-60348667 None:intergenic 30.0%
!!! GGAATTTTTCAAGTTGCATT+TGG - chr3.1:60349286-60349305 MS.gene30733:intron 30.0%
!!! TTTACTTTTGCAGTTTGCTA+TGG - chr3.1:60353719-60353738 MS.gene30733:CDS 30.0%
AAAGACAAAGGAAGCTGAAT+AGG - chr3.1:60352117-60352136 MS.gene30733:CDS 35.0%
AAAGTCAAACTACTAAGGGA+AGG - chr3.1:60353226-60353245 MS.gene30733:CDS 35.0%
AAGTCAAACTACTAAGGGAA+GGG - chr3.1:60353227-60353246 MS.gene30733:CDS 35.0%
AATATGAGAGTCACAGAAGA+TGG - chr3.1:60348555-60348574 MS.gene30733:CDS 35.0%
ACTACCATGAGTCTCAATAT+TGG - chr3.1:60353470-60353489 MS.gene30733:intron 35.0%
AGAAACCACATCAGATTTGT+TGG + chr3.1:60349521-60349540 None:intergenic 35.0%
AGTTCCATCATAATTTGGCA+TGG - chr3.1:60352162-60352181 MS.gene30733:CDS 35.0%
AGTTTCCAAACACACGAAAT+CGG + chr3.1:60350867-60350886 None:intergenic 35.0%
ATCAAATAGATAGGACACAG+TGG - chr3.1:60348601-60348620 MS.gene30733:CDS 35.0%
ATCAACCACTTTGTGACATA+AGG + chr3.1:60349209-60349228 None:intergenic 35.0%
ATCTTCCTTATGTCACAAAG+TGG - chr3.1:60349201-60349220 MS.gene30733:intron 35.0%
ATGCCAATGTTGTAAGAGAA+AGG - chr3.1:60353050-60353069 MS.gene30733:intron 35.0%
ATTGTTCCAGAATACTCAAG+TGG - chr3.1:60353178-60353197 MS.gene30733:CDS 35.0%
CAAAAGTAGAAACATGTTCG+AGG - chr3.1:60349729-60349748 MS.gene30733:intron 35.0%
CAAAGATGTTACCACATGTT+TGG - chr3.1:60353529-60353548 MS.gene30733:intron 35.0%
CTACCATGAGTCTCAATATT+GGG - chr3.1:60353471-60353490 MS.gene30733:intron 35.0%
CTTAATAGATTCAAGGTACG+TGG + chr3.1:60351652-60351671 None:intergenic 35.0%
CTTCCAATGACAAAATTCAG+AGG + chr3.1:60349974-60349993 None:intergenic 35.0%
GAGGATTATAGAAGCAAGTA+TGG + chr3.1:60351310-60351329 None:intergenic 35.0%
GAGTACGTCAAAAATAGGTT+GGG + chr3.1:60352461-60352480 None:intergenic 35.0%
GCAAAACTTGATCCTCAATA+TGG - chr3.1:60348976-60348995 MS.gene30733:CDS 35.0%
GCACACTTTGTGGATAAAAT+TGG - chr3.1:60353780-60353799 MS.gene30733:CDS 35.0%
GTAATACAATCAATTCGACC+TGG - chr3.1:60352902-60352921 MS.gene30733:CDS 35.0%
GTTCTTTGTTAGTAAACTCG+TGG - chr3.1:60349690-60349709 MS.gene30733:intron 35.0%
TGAGTACGTCAAAAATAGGT+TGG + chr3.1:60352462-60352481 None:intergenic 35.0%
TGATGTTAGTCAATATCCCA+TGG - chr3.1:60352967-60352986 MS.gene30733:CDS 35.0%
TGGACCATAATCTATTCCAT+TGG + chr3.1:60352234-60352253 None:intergenic 35.0%
TGTAATTGGTGAATTGAGCT+TGG + chr3.1:60350265-60350284 None:intergenic 35.0%
TTACCACATGTTTGGATTGA+CGG - chr3.1:60353537-60353556 MS.gene30733:intron 35.0%
TTGTTCCAGAATACTCAAGT+GGG - chr3.1:60353179-60353198 MS.gene30733:CDS 35.0%
TTTCTTTGTTCCCATCTAGA+TGG + chr3.1:60350497-60350516 None:intergenic 35.0%
TTTGGATTGACGGTTAGATT+TGG - chr3.1:60353547-60353566 MS.gene30733:intron 35.0%
! AAAATAGGTTGGGTTGTGTT+TGG + chr3.1:60351497-60351516 None:intergenic 35.0%
! AAATAGGTTGGGTTGTGTTT+GGG + chr3.1:60351496-60351515 None:intergenic 35.0%
! ATCTGATGTGGTTTCTGTTT+TGG - chr3.1:60349525-60349544 MS.gene30733:intron 35.0%
! GTTCACCATTGAGTTGTAAT+TGG + chr3.1:60350279-60350298 None:intergenic 35.0%
! TACCCTCTGAATTTTGTCAT+TGG - chr3.1:60349968-60349987 MS.gene30733:intron 35.0%
! TTCATGGCAAGTTCTTTTCT+TGG + chr3.1:60348706-60348725 None:intergenic 35.0%
!! AAATGTTAGCAATGGGTTGT+GGG - chr3.1:60350514-60350533 MS.gene30733:intron 35.0%
!! AACACCTTCTGAAAAGGTTT+TGG + chr3.1:60352419-60352438 None:intergenic 35.0%
!! AACCCCATTTTTATCTGCTT+TGG + chr3.1:60350209-60350228 None:intergenic 35.0%
!! AAGGCTGATTTTATGTCAGA+TGG + chr3.1:60350969-60350988 None:intergenic 35.0%
!! AAGTTGCATTTGGAGTTTTC+AGG - chr3.1:60349296-60349315 MS.gene30733:intron 35.0%
!! CTCATATTGAAAGCATCAGA+GGG + chr3.1:60348543-60348562 None:intergenic 35.0%
!! CTTTGGTGTCTTGTTTGTAT+CGG - chr3.1:60351419-60351438 MS.gene30733:intron 35.0%
!! GAAGGTGTTAAATCTGAAGT+TGG - chr3.1:60352430-60352449 MS.gene30733:intron 35.0%
!! GAATTCTGGCTTTCTTCTTT+GGG + chr3.1:60350696-60350715 None:intergenic 35.0%
!! TCTCATATTGAAAGCATCAG+AGG + chr3.1:60348544-60348563 None:intergenic 35.0%
!! TGAATTCTGGCTTTCTTCTT+TGG + chr3.1:60350697-60350716 None:intergenic 35.0%
!! TTCTGGAATTATAGTACTGG+AGG - chr3.1:60353407-60353426 MS.gene30733:CDS 35.0%
!! TTGGGTTTTATAGGAAGCAA+TGG - chr3.1:60350437-60350456 MS.gene30733:intron 35.0%
AAGGGTCCAAGCTGTAATAT+TGG - chr3.1:60353245-60353264 MS.gene30733:CDS 40.0%
ACTTCATGCTATGTTGCAAC+TGG - chr3.1:60350555-60350574 MS.gene30733:intron 40.0%
AGTCCCAATATTGAGACTCA+TGG + chr3.1:60353477-60353496 None:intergenic 40.0%
CAAAGAACACACTCAACTCA+AGG + chr3.1:60349678-60349697 None:intergenic 40.0%
CAACTCAATGGTGAACATGT+TGG - chr3.1:60350283-60350302 MS.gene30733:intron 40.0%
CCAAGCTGTAATATTGGACA+TGG - chr3.1:60353251-60353270 MS.gene30733:CDS 40.0%
CCATGTCCAATATTACAGCT+TGG + chr3.1:60353254-60353273 None:intergenic 40.0%
CTCCAGAAGGAATTTGATGA+TGG + chr3.1:60349570-60349589 None:intergenic 40.0%
CTCCATCATCAAATTCCTTC+TGG - chr3.1:60349565-60349584 MS.gene30733:intron 40.0%
CTTCACCAACAAATCTGATG+TGG - chr3.1:60349513-60349532 MS.gene30733:intron 40.0%
CTTGTTCTGTACTACCTTGT+GGG - chr3.1:60352202-60352221 MS.gene30733:CDS 40.0%
GACCGGTATTATTACACTAG+TGG + chr3.1:60352083-60352102 None:intergenic 40.0%
GCTGTTATATTACACACCTG+TGG - chr3.1:60351284-60351303 MS.gene30733:intron 40.0%
GGAGTGAGTACGTCAAAAAT+AGG + chr3.1:60352466-60352485 None:intergenic 40.0%
GGTCAGCGAATTTATAAGAC+AGG + chr3.1:60353851-60353870 None:intergenic 40.0%
GGTGAATTGAGCTTGGATTA+AGG + chr3.1:60350258-60350277 None:intergenic 40.0%
GTACTCACTCCTATATGAGA+TGG - chr3.1:60352475-60352494 MS.gene30733:intron 40.0%
GTTGGACAAGCAGCTAAAAT+TGG - chr3.1:60350301-60350320 MS.gene30733:intron 40.0%
TAACCGTCAATCCAAACATG+TGG + chr3.1:60353543-60353562 None:intergenic 40.0%
TACCTACACAAGCCATATTG+AGG + chr3.1:60348991-60349010 None:intergenic 40.0%
TCTTGTTCTGTACTACCTTG+TGG - chr3.1:60352201-60352220 MS.gene30733:CDS 40.0%
TGTGAATTACTACCCACCTT+GGG + chr3.1:60353749-60353768 None:intergenic 40.0%
TTATAGGAAGCAATGGCTGT+TGG - chr3.1:60350444-60350463 MS.gene30733:intron 40.0%
TTCCTCCTCTTATCTATGCT+GGG - chr3.1:60349122-60349141 MS.gene30733:intron 40.0%
TTGGTCATTCGTATAAGCTC+TGG - chr3.1:60353010-60353029 MS.gene30733:intron 40.0%
TTGTGAATTACTACCCACCT+TGG + chr3.1:60353750-60353769 None:intergenic 40.0%
TTGTTCTGTACTACCTTGTG+GGG - chr3.1:60352203-60352222 MS.gene30733:CDS 40.0%
TTTGGAAACTCTCGTTTCCA+CGG - chr3.1:60350877-60350896 MS.gene30733:intron 40.0%
! AAAGCACTTACTTCTCCAGA+AGG + chr3.1:60349583-60349602 None:intergenic 40.0%
! ATCCTCAATATGGCTTGTGT+AGG - chr3.1:60348986-60349005 MS.gene30733:CDS 40.0%
! CACTTGCAGGTTCATTTTCA+AGG - chr3.1:60351169-60351188 MS.gene30733:CDS 40.0%
! TTTGACTTCCTTGCTTGCAT+TGG - chr3.1:60351390-60351409 MS.gene30733:intron 40.0%
!! ATTGGTCTTCAGCAGCTTAA+GGG - chr3.1:60349472-60349491 MS.gene30733:CDS 40.0%
!! GAAATGTTAGCAATGGGTTG+TGG - chr3.1:60350513-60350532 MS.gene30733:intron 40.0%
!! GTAGTCTCACTTTTATGCCA+CGG + chr3.1:60353455-60353474 None:intergenic 40.0%
!! TAGTCTCACTTTTATGCCAC+GGG + chr3.1:60353454-60353473 None:intergenic 40.0%
!!! AGTTTTTTCCATAGAGGAGG+CGG + chr3.1:60348645-60348664 None:intergenic 40.0%
ACTATACCTATCATGGGGTG+AGG - chr3.1:60352051-60352070 MS.gene30733:intron 45.0%
AGGGAGATCTCCACTTAAGA+AGG + chr3.1:60350988-60351007 None:intergenic 45.0%
AGTGACCCACTTGAGTATTC+TGG + chr3.1:60353187-60353206 None:intergenic 45.0%
ATAATCCTCTCTGCACTTCC+TGG - chr3.1:60351321-60351340 MS.gene30733:intron 45.0%
ATACGAATGACCAAGATGCC+TGG + chr3.1:60353004-60353023 None:intergenic 45.0%
ATAGAAGCAAGTATGGCCAC+AGG + chr3.1:60351303-60351322 None:intergenic 45.0%
ATCCCAGCATAGATAAGAGG+AGG + chr3.1:60349127-60349146 None:intergenic 45.0%
ATTAACCCTCACCCCATGAT+AGG + chr3.1:60352060-60352079 None:intergenic 45.0%
CCACAGCTTCAGAAACAGTA+AGG + chr3.1:60353821-60353840 None:intergenic 45.0%
CCTCTTATCTATGCTGGGAT+GGG - chr3.1:60349127-60349146 MS.gene30733:CDS 45.0%
CTACCAAGAACTTCTATCCC+AGG + chr3.1:60352923-60352942 None:intergenic 45.0%
CTATACCTATCATGGGGTGA+GGG - chr3.1:60352052-60352071 MS.gene30733:CDS 45.0%
CTCTTATCTATGCTGGGATG+GGG - chr3.1:60349128-60349147 MS.gene30733:CDS 45.0%
CTGCTGAAGACCAATCATGA+TGG + chr3.1:60349467-60349486 None:intergenic 45.0%
GAATTGATGCTCGTTGCATC+TGG + chr3.1:60352352-60352371 None:intergenic 45.0%
GCTTAAAGTGGCACACTTTG+TGG - chr3.1:60353770-60353789 MS.gene30733:CDS 45.0%
GTTCCTCCTCTTATCTATGC+TGG - chr3.1:60349121-60349140 MS.gene30733:intron 45.0%
TCACAGAAAGCTTGTGTCGT+TGG + chr3.1:60352950-60352969 None:intergenic 45.0%
TCCTCTTATCTATGCTGGGA+TGG - chr3.1:60349126-60349145 MS.gene30733:intron 45.0%
TGCTGCACTTGTAGGATTCA+TGG - chr3.1:60349432-60349451 MS.gene30733:CDS 45.0%
TTGGTTTCCAGACACAAGTG+TGG - chr3.1:60349099-60349118 MS.gene30733:intron 45.0%
TTGTCACATGCTGCACTTGT+AGG - chr3.1:60349424-60349443 MS.gene30733:CDS 45.0%
! AGAGACCGATTTCGTGTGTT+TGG - chr3.1:60350859-60350878 MS.gene30733:intron 45.0%
! CTAAACGGACGTTTGATGAC+AGG - chr3.1:60350943-60350962 MS.gene30733:CDS 45.0%
! GCTTGCATTGGTGCTTTCTT+TGG - chr3.1:60351402-60351421 MS.gene30733:intron 45.0%
! TGCTAGTCTAAGCATACCTC+AGG - chr3.1:60348827-60348846 MS.gene30733:intron 45.0%
! TTAATCCAGGAAGTGCAGAG+AGG + chr3.1:60351329-60351348 None:intergenic 45.0%
! TTGCAGGTTGGGATTTCTTG+TGG - chr3.1:60349396-60349415 MS.gene30733:CDS 45.0%
! TTGGTCTTCAGCAGCTTAAG+GGG - chr3.1:60349473-60349492 MS.gene30733:CDS 45.0%
!! AGAAAGCACCAATGCAAGCA+AGG + chr3.1:60351401-60351420 None:intergenic 45.0%
!! AGTTTGCTATGGTGAACCCA+AGG - chr3.1:60353730-60353749 MS.gene30733:CDS 45.0%
!! CCTTACTGTTTCTGAAGCTG+TGG - chr3.1:60353818-60353837 MS.gene30733:CDS 45.0%
!! GATTGGTCTTCAGCAGCTTA+AGG - chr3.1:60349471-60349490 MS.gene30733:CDS 45.0%
!! ATAAAATTGTTAATTAATTT+AGG + chr3.1:60351913-60351932 None:intergenic 5.0%
!! TAAAATTGTTAATTAATTTA+GGG + chr3.1:60351912-60351931 None:intergenic 5.0%
!! TATATATATATATATATATG+TGG + chr3.1:60352319-60352300 None:intergenic 5.0%
!! TTAAAAAAAAAAAAAAACTA+AGG + chr3.1:60350378-60350397 None:intergenic 5.0%
!!! ATAATTTTTTTTTCAAAAAT+TGG - chr3.1:60351551-60351570 MS.gene30733:intron 5.0%
!!! TAAATTAATTAACAATTTTA+TGG - chr3.1:60351912-60351931 MS.gene30733:CDS 5.0%
!!! TTATATTTTTTATAATTTCA+AGG - chr3.1:60349816-60349835 MS.gene30733:intron 5.0%
AGCAGCTTAAGGGGTTGCTT+GGG - chr3.1:60349482-60349501 MS.gene30733:CDS 50.0%
AGCAGTGACACTACAGCTAC+TGG + chr3.1:60349178-60349197 None:intergenic 50.0%
CCCATCCCAGCATAGATAAG+AGG + chr3.1:60349130-60349149 None:intergenic 50.0%
CGACCTGGGATAGAAGTTCT+TGG - chr3.1:60352917-60352936 MS.gene30733:CDS 50.0%
GACACTAGAGGAGCAATAGC+TGG + chr3.1:60350154-60350173 None:intergenic 50.0%
GCACTTGTAGGATTCATGGC+AGG - chr3.1:60349436-60349455 MS.gene30733:CDS 50.0%
GCTATGTTGCAACTGGTGAG+TGG - chr3.1:60350562-60350581 MS.gene30733:intron 50.0%
GTTTCCACGGTGGAAACTCA+CGG - chr3.1:60350890-60350909 MS.gene30733:intron 50.0%
TACAAGCACTCCAGGCATCT+TGG - chr3.1:60352991-60353010 MS.gene30733:intron 50.0%
TACTGGAGGAACTGCACAAG+AGG - chr3.1:60353421-60353440 MS.gene30733:CDS 50.0%
TGCTATGGTGAACCCAAGGT+GGG - chr3.1:60353734-60353753 MS.gene30733:CDS 50.0%
TTGCTATGGTGAACCCAAGG+TGG - chr3.1:60353733-60353752 MS.gene30733:CDS 50.0%
! ATGGGTTGTGGGAACATTGC+AGG - chr3.1:60350525-60350544 MS.gene30733:intron 50.0%
! TTCCATAGAGGAGGCGGATT+TGG + chr3.1:60348639-60348658 None:intergenic 50.0%
CACCAAATCCGCCTCCTCTA+TGG - chr3.1:60348634-60348653 MS.gene30733:CDS 55.0%
CAGCAGCTTAAGGGGTTGCT+TGG - chr3.1:60349481-60349500 MS.gene30733:CDS 55.0%
GCAGGTGCAGCCATCATGAT+TGG - chr3.1:60349454-60349473 MS.gene30733:CDS 55.0%
GGAAACTCTCGTTTCCACGG+TGG - chr3.1:60350880-60350899 MS.gene30733:intron 55.0%
GGAGGAACCACACTTGTGTC+TGG + chr3.1:60349109-60349128 None:intergenic 55.0%
TCCATTGGAGATGCCCCACA+AGG + chr3.1:60352219-60352238 None:intergenic 55.0%
TTTGCCGTGAGTTTCCACCG+TGG + chr3.1:60350897-60350916 None:intergenic 55.0%
! ACCTTGTGGGGCATCTCCAA+TGG - chr3.1:60352215-60352234 MS.gene30733:CDS 55.0%
! CCTGGAGTGCTTGTAGCCAT+GGG + chr3.1:60352986-60353005 None:intergenic 55.0%
CACAAGAGGTTGCTCTCCCG+TGG - chr3.1:60353435-60353454 MS.gene30733:intron 60.0%
CCCATGGCTACAAGCACTCC+AGG - chr3.1:60352983-60353002 MS.gene30733:intron 60.0%
! GCCTGGAGTGCTTGTAGCCA+TGG + chr3.1:60352987-60353006 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 60348528 60353875 60348528 ID=MS.gene30733
chr3.1 mRNA 60348528 60353875 60348528 ID=MS.gene30733.t1;Parent=MS.gene30733
chr3.1 exon 60353555 60353875 60353555 ID=MS.gene30733.t1.exon1;Parent=MS.gene30733.t1
chr3.1 CDS 60353555 60353875 60353555 ID=cds.MS.gene30733.t1;Parent=MS.gene30733.t1
chr3.1 exon 60353400 60353448 60353400 ID=MS.gene30733.t1.exon2;Parent=MS.gene30733.t1
chr3.1 CDS 60353400 60353448 60353400 ID=cds.MS.gene30733.t1;Parent=MS.gene30733.t1
chr3.1 exon 60353086 60353293 60353086 ID=MS.gene30733.t1.exon3;Parent=MS.gene30733.t1
chr3.1 CDS 60353086 60353293 60353086 ID=cds.MS.gene30733.t1;Parent=MS.gene30733.t1
chr3.1 exon 60352812 60353001 60352812 ID=MS.gene30733.t1.exon4;Parent=MS.gene30733.t1
chr3.1 CDS 60352812 60353001 60352812 ID=cds.MS.gene30733.t1;Parent=MS.gene30733.t1
chr3.1 exon 60352373 60352438 60352373 ID=MS.gene30733.t1.exon5;Parent=MS.gene30733.t1
chr3.1 CDS 60352373 60352438 60352373 ID=cds.MS.gene30733.t1;Parent=MS.gene30733.t1
chr3.1 exon 60352052 60352282 60352052 ID=MS.gene30733.t1.exon6;Parent=MS.gene30733.t1
chr3.1 CDS 60352052 60352282 60352052 ID=cds.MS.gene30733.t1;Parent=MS.gene30733.t1
chr3.1 exon 60351827 60351953 60351827 ID=MS.gene30733.t1.exon7;Parent=MS.gene30733.t1
chr3.1 CDS 60351827 60351953 60351827 ID=cds.MS.gene30733.t1;Parent=MS.gene30733.t1
chr3.1 exon 60350939 60351225 60350939 ID=MS.gene30733.t1.exon8;Parent=MS.gene30733.t1
chr3.1 CDS 60350939 60351225 60350939 ID=cds.MS.gene30733.t1;Parent=MS.gene30733.t1
chr3.1 exon 60349332 60349525 60349332 ID=MS.gene30733.t1.exon9;Parent=MS.gene30733.t1
chr3.1 CDS 60349332 60349525 60349332 ID=cds.MS.gene30733.t1;Parent=MS.gene30733.t1
chr3.1 exon 60349127 60349215 60349127 ID=MS.gene30733.t1.exon10;Parent=MS.gene30733.t1
chr3.1 CDS 60349127 60349215 60349127 ID=cds.MS.gene30733.t1;Parent=MS.gene30733.t1
chr3.1 exon 60348939 60349015 60348939 ID=MS.gene30733.t1.exon11;Parent=MS.gene30733.t1
chr3.1 CDS 60348939 60349015 60348939 ID=cds.MS.gene30733.t1;Parent=MS.gene30733.t1
chr3.1 exon 60348528 60348671 60348528 ID=MS.gene30733.t1.exon12;Parent=MS.gene30733.t1
chr3.1 CDS 60348528 60348671 60348528 ID=cds.MS.gene30733.t1;Parent=MS.gene30733.t1
Gene Sequence

>MS.gene30733

ATGAGTTCATTACCCTCTGATGCTTTCAATATGAGAGTCACAGAAGATGGAAATCTTCATCTTGAAGATACTCATCAAATAGATAGGACACAGTGGATGCTAAATTCACCAAATCCGCCTCCTCTATGGAAAAAACTAATTACTCCACTTAAGAATAACAAGTTTTTTTCTTCATCCAAGAAAAGAACTTGCCATGAACATGTTTTTTCTTTCTTTAGTGGTTTATTTCCAATACTTAGTTTGTTCAAAAACTATGATGCTTTCAAGTTTAAAGATGATTTTCTAGCAGGTTTAACTCTTGCTAGTCTAAGCATACCTCAGGTATATATTCACAATTATTACTTTTTTTTATTTTTAGACCAATGTTTCAGATGCATAAATAATATATTTTATTACATACTTACTCATTTTTTATCTAATGTTGCAGAGTATTGGTTATGCTAATTTAGCAAAACTTGATCCTCAATATGGCTTGTGTAGGTATCTAACTTTAGTTGTCTATATTAATATACTATAAAATGCAATGACTATTTATAGTTTGAATATTTTCTAATATGAATTATTTATTTGATTGGTTTCCAGACACAAGTGTGGTTCCTCCTCTTATCTATGCTGGGATGGGGAGTTCAAGAGAAATTGCAATTGGACCAGTAGCTGTAGTGTCACTGCTGCTATCTTCCTTATGTCACAAAGTGGTTGATCCAGATTTAAATCATGATGATTACAGAAATTTTGTCTTTACTGTAACATTATTTGCTGGAATTTTTCAAGTTGCATTTGGAGTTTTCAGGTACTTAATTAATTTCCTCATTTAACTGTTAATTATCTTTTAAATGTCTAGATTGAATGATTAATTTAATTTAATCTGTTGCAGGTTGGGATTTCTTGTGGATTTTTTGTCACATGCTGCACTTGTAGGATTCATGGCAGGTGCAGCCATCATGATTGGTCTTCAGCAGCTTAAGGGGTTGCTTGGGATTAGTAACTTCACCAACAAATCTGATGTGGTTTCTGTTTTGGAATCTGTTTATAAGTCACTCCATCATCAAATTCCTTCTGGAGAAGTAAGTGCTTTTTTCATTTTCTAGGAGAGAAATTCAAATATTATAACTAATAGTCCCTAAATATATTGTAATTGCAAAAATATCCTTGAGTTGAGTGTGTTCTTTGTTAGTAAACTCGTGGACTAAACAAACTGATGCAAAAGTAGAAACATGTTCGAGGATCAAACTAACTAATGAAAGATATACGAAGACAAAACTGAGAAAAAAGACGTTCATGAATGTTTTTATATTTTTTATAATTTCAAGGACTAATGTATGTTTACTAAGTAAAGACAATTAACAAAAAAGGGTCATAAGTTATAAATTTTGGACAGAACTATTTGTGTGTGTTTTGCTGATATTTGACATTATTTTTTGTTTATTATATTGACAGTGGTACCCTCTGAATTTTGTCATTGGAAGTTCATTTCTGATTTTCCTTTTGTTTGCAAGATTTATGGTAAGAAATGAAATAGTATATTTTTGGCATATATTCAAATTTCCACTAGTACAATATTTCTGATTTTATTTGAGTTTCTGATTATTTCAGGGAAAAAGAAACAAAAAGCTATTCTGGTTGCCAGCTATTGCTCCTCTAGTGTCAGTTATATTATCAACTTTTATTGTGTATATATCCAAAGCAGATAAAAATGGGGTTAATATAGTAAAACATGTCAAAAGAGGCCTTAATCCAAGCTCAATTCACCAATTACAACTCAATGGTGAACATGTTGGACAAGCAGCTAAAATTGGATTGATTTCTGCTGTTATTGCTCTCACTGTATGTTAATTAGTAAATAATTTCCTTAGTTTTTTTTTTTTTTTAATTTTATATTTTTTAGTTTCTAAAAATTTTGAGGTTTAATTTGGGTTTTATAGGAAGCAATGGCTGTTGGTAGATCTTTTGCTTCAATTAAAGGATACCATCTAGATGGGAACAAAGAAATGTTAGCAATGGGTTGTGGGAACATTGCAGGATCTTTCACTTCATGCTATGTTGCAACTGGTGAGTGGTGACTTTTTCTATTTTCAATTAATTATATAGTTAAAATGTGTAAAGTTTCAATATTTGTTAATAAGAAAAGACTTTTCCTAAAATAAATAAAAGTAGATCTCAAATATCCCAAAGAAGAAAGCCAGAATTCACTTCTAGAATAATTGAAGTGAAGTACTAAAGGAAATTATGAAGAAAAAAAATTAAAGTACTAACAAAAGTTTTTTTTTTTAACAAAAAGTACCAGCAAAAGATAAAGATATAAAACTATGAAATTTTTGCTCTAAACATTTTAGAGACCGATTTCGTGTGTTTGGAAACTCTCGTTTCCACGGTGGAAACTCACGGCAAATCAAAAGCTACCTCATATAACTTCAACTAAACGGACGTTTGATGACAGGCCATCTGACATAAAATCAGCCTTCTTAAGTGGAGATCTCCCTAAGAATGATTCGTTGAATTTCTCGACAAAAATTAATCACCGAAAAAACATGGTGAATACTTCGTACCAATTTATAAAAAAATAAAATAAAATAGTCTATCTCTAGTTTAATTATGACGTGTAAAGTATTTTATTTGTTTTATTGTTGGTTTAATTCTTAAACACTTGCAGGTTCATTTTCAAGGACTGCAGTAAATTTCAGTGCAAGATGTCAATCATCAGTATCAAATATTGTGATGGCTATAACAGTGATTTTGTGTTTAGAATTGTTTACAAGGCTGTTATATTACACACCTGTGGCCATACTTGCTTCTATAATCCTCTCTGCACTTCCTGGATTAATTGACATAAGAGAAGCTTGCTATATATGGAAAGTTGACAAATTTGACTTCCTTGCTTGCATTGGTGCTTTCTTTGGTGTCTTGTTTGTATCGGTAGAAATTGGTCTTCTTGTTGCAGTAAGTTGTTCGTCCTTTTCTTAAAATTCCCAAACACAACCCAACCTATTTTCATATATGTTTAGAAGAAAAATATAGTTGTGATTATAATTTTTTTTTCAAAAATTGGAAAACAGTAAAATTATTACTATCGTTTAAAGTGAAACTAATTACCAGTTTACACACATGTTTAAGAGAATTTGAACCACGTACCTTGAATCTATTAAGTTAAACTTTAACCAATAAATTAACGGGTTACTTAAGTTAATATCCTCTATAAATATCCAGAATTTCATTTTTAGTCTATACAAAGAAATTTGCACTTTTTATTTTTCTGTAAAATTTTACGTCACTATTTTTAGTCCTAAAAAGAGTAAAGAAAAACATTACAGGATTAAAAAGTACAGTTTTTGTTATAGACTAAAACGAAATTATTGATATTTATGGGTTTATTTACTTAATTAACCCTAAATTAATTAACAATTTTATGGACTACTGTAGTTGTAATCTCATTCAAACTTTGTCATATGAGAATTTATTTATTTATTTTTTGACAGAAAGAATCTACTTATATCTTAAAATCACCACTTTACAAATATTTTAGTTAACTATACCTATCATGGGGTGAGGGTTAATCCACTAGTGTAATAATACCGGTCAAAATTATTGGTAAAAAGACAAAGGAAGCTGAATAGGAAGAAGTTAGAACTAACAAGTGAGTTCCATCATAATTTGGCATGGATTTATAGCAGTGCTGTCTTGTTCTGTACTACCTTGTGGGGCATCTCCAATGGAATAGATTATGGTCCACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGGTCTCATATACATAGTTTTTTTTTTTTAACCAGATGCAACGAGCATCAATTCATTAAACAAAAAACAAGAATACAATAAAGAAAAGGGGGACTATACCAAAACCTTTTCAGAAGGTGTTAAATCTGAAGTTGGGCATACCCAACCTATTTTTGACGTACTCACTCCTATATGAGATGGTCTCATATACATAGTTGTTAGTTCTATTATTGAACTTAATTTTTGGCATTACTCCAACTCTAAAAAAAAATAAAAAATAAAATAGAATTTTCAACTTTTTCTTATTATCAAAAGATAAGTTGAAAATTCTAGTTTTTTTTTACCTTAAAAACAATTTCATTGATGAAAGTTTGACAACAAATCAAATGCTAGACTGCAAAAATACATGACAAAGTCTCTTCGAATAAAAGGTTATGTAAGACAAGCGAAATACATTTAGATTGATTCTTTAGTATACTATTATTCATTTTATTTCAATTACATTATATGCTCTAAAGAGTATGTATATAGTACCACAATAAAAGGAAAATAAATATCTAAATGAAAATTTGGTTTTGTAGGTGTCAATCTCGTTTGCAAAGATAGTAATACAATCAATTCGACCTGGGATAGAAGTTCTTGGTAGAATTCCAACGACACAAGCTTTCTGTGATGTTAGTCAATATCCCATGGCTACAAGCACTCCAGGCATCTTGGTCATTCGTATAAGCTCTGGCTCACTCTGCTTTGCAAATGCCAATGTTGTAAGAGAAAGGTAATTAATTAATTAATTAAGCTATCACTTACAATATTAGTATTTCTTTTTTTAGAGATATTATAGTATTTCATTAATAATTAATTTTTGAAATTAAAATTACTTAATTGTTCCAGAATACTCAAGTGGGTCACTGAAGAAGATGTTCTTAAAGAAAGTCAAACTACTAAGGGAAGGGTCCAAGCTGTAATATTGGACATGGCTAGTGAGTCTTATAACTCATGATTCTAATACTAAATAAATATTCATATATATAGTTTATTCTATTAACATTTTGAATTTATGAGTGAATAACCTTACACATTTTCTTTGATAGATTTGATGAATGTTGATACTTCTGGAATTATAGTACTGGAGGAACTGCACAAGAGGTTGCTCTCCCGTGGCATAAAAGTGAGACTACCATGAGTCTCAATATTGGGACTTTATATAATATATTGCATTGACGTGGTTTGCTCAAAGATGTTACCACATGTTTGGATTGACGGTTAGATTTGGCAAAATTACGTTGACACCATAATTTTGTTGAATATATACATATAGATTTTATTAAAATTGTGGTAAAGCAACGTGATTCTGCCAAATTTGTCGATAATCTAAACAAGCATTTAATGTTATTTACTAATTAAATGTTATTGTTACTGCTATTTACTTTTGCAGTTTGCTATGGTGAACCCAAGGTGGGTAGTAATTCACAAGCTTAAAGTGGCACACTTTGTGGATAAAATTGGGAAAGAATGGGTTTTCCTTACTGTTTCTGAAGCTGTGGAAGCATGCCTGTCTTATAAATTCGCTGACCCATGA

Protein sequence

>MS.gene30733.t1

MSSLPSDAFNMRVTEDGNLHLEDTHQIDRTQWMLNSPNPPPLWKKLITPLKNNKFFSSSKKRTCHEHVFSFFSGLFPILSLFKNYDAFKFKDDFLAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVVPPLIYAGMGSSREIAIGPVAVVSLLLSSLCHKVVDPDLNHDDYRNFVFTVTLFAGIFQVAFGVFRLGFLVDFLSHAALVGFMAGAAIMIGLQQLKGLLGISNFTNKSDVVSVLESVYKSLHHQIPSGEWYPLNFVIGSSFLIFLLFARFMGKRNKKLFWLPAIAPLVSVILSTFIVYISKADKNGVNIVKHVKRGLNPSSIHQLQLNGEHVGQAAKIGLISAVIALTEAMAVGRSFASIKGYHLDGNKEMLAMGCGNIAGSFTSCYVATGSFSRTAVNFSARCQSSVSNIVMAITVILCLELFTRLLYYTPVAILASIILSALPGLIDIREACYIWKVDKFDFLACIGAFFGVLFVSVEIGLLVAVSISFAKIVIQSIRPGIEVLGRIPTTQAFCDVSQYPMATSTPGILVIRISSGSLCFANANVVRERILKWVTEEDVLKESQTTKGRVQAVILDMANLMNVDTSGIIVLEELHKRLLSRGIKFAMVNPRWVVIHKLKVAHFVDKIGKEWVFLTVSEAVEACLSYKFADP