AlfalfaGEDB | MS.gene31004

M. sativa cultivar XinJiangDaYe / MS.gene31004

KEGG: K10355
GO: -
PFAM: PF00022.22

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31004.t1	XP_012571874.1	100	377	0	0	1	377	1	377	4.80E-217	763.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31004.t1	P53492	98.4	377	6	0	1	377	1	377	4.1e-217	755.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31004.t1	G7JAX4	100.0	377	0	0	1	377	1	377	3.4e-217	763.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049321	MS.gene31004	0.972772	2.58E-135	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene31004	MS.gene055991	PPI
MS.gene31004	MS.gene37274	PPI
MS.gene31004	MS.gene86676	PPI
MS.gene033590	MS.gene31004	PPI
MS.gene31004	MS.gene014281	PPI
MS.gene31004	MS.gene065414	PPI
MS.gene044849	MS.gene31004	PPI
MS.gene31004	MS.gene46685	PPI
MS.gene31004	MS.gene79962	PPI
MS.gene31004	MS.gene032698	PPI
MS.gene31004	MS.gene31154	PPI
MS.gene31004	MS.gene04628	PPI
MS.gene034501	MS.gene31004	PPI
MS.gene31004	MS.gene92731	PPI
MS.gene31004	MS.gene024155	PPI
MS.gene31004	MS.gene052120	PPI
MS.gene31004	MS.gene77958	PPI
MS.gene31004	MS.gene55068	PPI
MS.gene31004	MS.gene82765	PPI
MS.gene31004	MS.gene52664	PPI
MS.gene31004	MS.gene022650	PPI
MS.gene31004	MS.gene30959	PPI
MS.gene31004	MS.gene68222	PPI
MS.gene31004	MS.gene45491	PPI
MS.gene31004	MS.gene45493	PPI
MS.gene31004	MS.gene37081	PPI
MS.gene31004	MS.gene001874	PPI
MS.gene31004	MS.gene86783	PPI
MS.gene31004	MS.gene063165	PPI
MS.gene31004	MS.gene017992	PPI
MS.gene31004	MS.gene000108	PPI
MS.gene064894	MS.gene31004	PPI
MS.gene31004	MS.gene053110	PPI
MS.gene31004	MS.gene037838	PPI
MS.gene055437	MS.gene31004	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31004.t1	MTR_3g095530	100.000	377	0	0	1	377	1	377	0.0	783
MS.gene31004.t1	MTR_0015s0130	95.756	377	16	0	1	377	1	377	0.0	763
MS.gene31004.t1	MTR_7g026230	96.021	377	15	0	1	377	1	377	0.0	762
MS.gene31004.t1	MTR_7g093260	95.756	377	16	0	1	377	1	377	0.0	761
MS.gene31004.t1	MTR_6g004000	95.491	377	17	0	1	377	1	377	0.0	761
MS.gene31004.t1	MTR_2g096840	94.960	377	19	0	1	377	1	377	0.0	761
MS.gene31004.t1	MTR_2g008050	94.695	377	20	0	1	377	1	377	0.0	754
MS.gene31004.t1	MTR_7g027185	43.799	379	199	3	10	374	7	385	3.83e-121	355
MS.gene31004.t1	MTR_7g027185	45.070	355	182	2	10	351	7	361	1.94e-118	348
MS.gene31004.t1	MTR_7g027185	48.208	307	157	1	10	314	7	313	9.99e-111	326
MS.gene31004.t1	MTR_5g066400	37.360	447	206	12	1	376	1	444	7.43e-91	280
MS.gene31004.t1	MTR_8g464900	36.659	431	200	11	1	361	1	428	3.17e-84	263
MS.gene31004.t1	MTR_5g066400	34.753	446	191	12	1	376	1	416	4.03e-78	246
MS.gene31004.t1	MTR_8g089630	34.474	409	222	8	10	372	10	418	4.24e-72	231
MS.gene31004.t1	MTR_3g030550	37.105	380	213	9	7	377	1	363	2.05e-68	220
MS.gene31004.t1	MTR_5g066400	34.000	400	193	11	1	332	1	397	1.22e-66	217
MS.gene31004.t1	MTR_2g445210	28.132	423	238	7	8	366	6	426	1.50e-55	189
MS.gene31004.t1	MTR_8g007440	33.206	262	152	5	77	319	9	266	4.35e-44	154
MS.gene31004.t1	MTR_2g445210	26.882	372	206	7	8	315	6	375	6.14e-42	151
MS.gene31004.t1	MTR_3g010170	30.976	297	181	9	91	371	179	467	1.26e-39	147
MS.gene31004.t1	MTR_8g070520	32.082	293	172	10	91	366	187	469	3.90e-37	140
MS.gene31004.t1	MTR_8g070520	31.655	278	164	9	91	352	187	454	1.44e-33	130
MS.gene31004.t1	MTR_3g067945	30.556	252	156	7	9	245	21	268	8.01e-24	103
MS.gene31004.t1	MTR_3g067945	34.426	122	77	2	250	368	586	707	6.27e-16	79.7
MS.gene31004.t1	MTR_8g008540	72.973	37	10	0	340	376	41	77	2.58e-13	65.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31004.t1	AT5G09810	98.408	377	6	0	1	377	1	377	0.0	774
MS.gene31004.t1	AT3G53750	95.491	377	17	0	1	377	1	377	0.0	760
MS.gene31004.t1	AT3G53750	95.491	377	17	0	1	377	1	377	0.0	760
MS.gene31004.t1	AT2G37620	95.491	377	17	0	1	377	1	377	0.0	760
MS.gene31004.t1	AT2G37620	95.491	377	17	0	1	377	1	377	0.0	760
MS.gene31004.t1	AT2G37620	95.491	377	17	0	1	377	1	377	0.0	760
MS.gene31004.t1	AT2G37620	95.491	377	17	0	1	377	1	377	0.0	760
MS.gene31004.t1	AT3G12110	95.491	377	17	0	1	377	1	377	0.0	760
MS.gene31004.t1	AT3G46520	94.430	377	21	0	1	377	1	377	0.0	749
MS.gene31004.t1	AT3G46520	94.430	377	21	0	1	377	1	377	0.0	749
MS.gene31004.t1	AT1G49240	93.369	377	25	0	1	377	1	377	0.0	749
MS.gene31004.t1	AT5G59370	94.164	377	22	0	1	377	1	377	0.0	748
MS.gene31004.t1	AT5G59370	94.164	377	22	0	1	377	1	377	0.0	748
MS.gene31004.t1	AT3G18780	93.103	377	26	0	1	377	1	377	0.0	747
MS.gene31004.t1	AT3G18780	93.103	377	26	0	1	377	1	377	0.0	747
MS.gene31004.t1	AT3G18780	92.521	361	27	0	1	361	1	361	0.0	707
MS.gene31004.t1	AT2G42100	84.511	368	57	0	10	377	11	378	0.0	674
MS.gene31004.t1	AT2G42090	71.622	370	100	1	7	376	1	365	0.0	569
MS.gene31004.t1	AT2G42170	78.313	332	69	1	46	377	1	329	0.0	560
MS.gene31004.t1	AT2G42170	78.313	332	69	1	46	377	1	329	0.0	560
MS.gene31004.t1	AT2G42170	78.526	312	64	1	46	357	1	309	0.0	523
MS.gene31004.t1	AT2G42170	78.526	312	64	1	46	357	1	309	0.0	523
MS.gene31004.t1	AT2G42170	78.319	226	46	1	152	377	9	231	2.42e-131	375
MS.gene31004.t1	AT3G27000	44.591	379	196	4	10	374	7	385	1.12e-122	360
MS.gene31004.t1	AT1G18450	38.202	445	201	11	1	376	1	440	8.62e-95	290
MS.gene31004.t1	AT1G13180	34.867	413	215	10	10	372	9	417	1.55e-72	233
MS.gene31004.t1	AT3G60830	37.467	379	213	9	7	377	1	363	1.66e-66	215
MS.gene31004.t1	AT3G33520	30.404	421	235	7	10	377	5	420	3.61e-59	197
MS.gene31004.t1	AT5G56180	30.928	291	175	9	91	364	50	331	2.01e-35	132
MS.gene31004.t1	AT5G56180	30.928	291	175	9	91	364	182	463	1.17e-34	133
MS.gene31004.t1	AT3G12380	29.572	257	158	6	9	245	21	274	3.50e-26	110
MS.gene31004.t1	AT3G12380	34.426	122	77	1	250	368	595	716	6.04e-16	80.1
MS.gene31004.t1	AT3G12380	29.412	255	155	6	9	245	21	268	1.77e-25	108
MS.gene31004.t1	AT3G12380	34.426	122	77	1	250	368	589	710	5.80e-16	80.1
MS.gene31004.t1	AT1G73910	35.862	145	74	3	1	129	1	142	2.69e-23	95.1
MS.gene31004.t1	AT1G73910	35.862	145	74	3	1	129	1	142	2.69e-23	95.1
MS.gene31004.t1	AT5G56180	31.683	202	115	7	91	281	182	371	4.62e-19	88.2
MS.gene31004.t1	AT1G73910	29.268	123	71	2	1	107	1	123	2.86e-12	65.1

Find 119 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGAAAGTCTCAAACATGATT+TGG	0.224034	3.3:+79188651	None:intergenic
AGAAGCACTGGGTGCTCTTC+AGG	0.266274	3.3:+79188719	None:intergenic
GAGAGTAAGAATACCTCTTT+TGG	0.276320	3.3:+79188832	None:intergenic
GATGGTTGGAAAAGGACTTC+TGG	0.306272	3.3:+79188157	None:intergenic
AGCACGGTATTGTCAGTAAC+TGG	0.314467	3.3:-79188796	MS.gene31004:CDS
ACAGGTATTGTGTTGGATTC+CGG	0.317257	3.3:-79188484	MS.gene31004:intron
CTGACAATACCGTGCTCAAT+GGG	0.336851	3.3:+79188803	None:intergenic
ATCCTTCGTTTGGATCTTGC+TGG	0.344358	3.3:-79188406	MS.gene31004:CDS
TCCTAGCAGCATGAAGATTA+AGG	0.346598	3.3:-79187966	MS.gene31004:CDS
GGTGGTTCAACTATGTTTCC+TGG	0.355516	3.3:-79188028	MS.gene31004:CDS
TGTGTGCAGGCTGGATTTGC+TGG	0.360977	3.3:-79188965	MS.gene31004:intron
GAAAGTCTCAAACATGATTT+GGG	0.367813	3.3:+79188652	None:intergenic
GCTTCCATTCCGATCATTGA+TGG	0.371444	3.3:+79188139	None:intergenic
CTATTGGCCTTTGGGTTAAG+TGG	0.372320	3.3:+79188686	None:intergenic
TACTGGTGTCATGGTTGGTA+TGG	0.381549	3.3:-79188891	MS.gene31004:CDS
CCCACATGCTATCCTTCGTT+TGG	0.383523	3.3:-79188416	MS.gene31004:CDS
CGAGGTCGGCCAACAATACT+TGG	0.411313	3.3:+79188917	None:intergenic
TACGGCAACATTGTTCTTAG+TGG	0.417976	3.3:-79188049	MS.gene31004:CDS
ATGGTTGGAAAAGGACTTCT+GGG	0.420047	3.3:+79188158	None:intergenic
GGAAATTGTCCGTGACATAA+AGG	0.432407	3.3:-79188311	MS.gene31004:CDS
TATGCAAGTGGTCGTACAAC+TGG	0.432992	3.3:-79188584	MS.gene31004:intron
GTTGGCCGACCTCGTCATAC+TGG	0.436618	3.3:-79188908	MS.gene31004:CDS
CTTGTTTGTGACAATGGAAC+TGG	0.436831	3.3:-79189081	MS.gene31004:CDS
TCTTCATGCTGCTAGGAGCC+AGG	0.437433	3.3:+79187972	None:intergenic
CAACCCCTTGTTTGTGACAA+TGG	0.439095	3.3:-79189087	MS.gene31004:CDS
TTCTCTCAGTACTTTCCAGC+AGG	0.448158	3.3:-79187888	MS.gene31004:intron
GGAGCCTCAGTTAGAAGCAC+TGG	0.448567	3.3:+79188707	None:intergenic
TTGCTGGTGATGATGCTCCT+AGG	0.448710	3.3:-79188949	MS.gene31004:CDS
GCTGTGTTTCCAAGTATTGT+TGG	0.449099	3.3:-79188926	MS.gene31004:CDS
CGCCATGTATGTGGCCATCC+AGG	0.449438	3.3:-79188621	MS.gene31004:CDS
ACACTTCATGATAGAGTTGT+AGG	0.451087	3.3:+79188096	None:intergenic
CAGAGAGAAAGTACAGTGTC+TGG	0.452136	3.3:-79187931	MS.gene31004:CDS
GATGGACAAGTTATCACAAT+TGG	0.452391	3.3:-79188199	MS.gene31004:CDS
ATTGTGATAACTTGTCCATC+AGG	0.464957	3.3:+79188202	None:intergenic
CATTTCCTGTGGACAATGGA+TGG	0.469196	3.3:+79187731	None:intergenic
CGATCATTGATGGTTGGAAA+AGG	0.470418	3.3:+79188149	None:intergenic
GGGATGACATGGAGAAGATC+TGG	0.479434	3.3:-79188775	MS.gene31004:CDS
GAAGCTTGCATATGTTGCCT+TGG	0.482032	3.3:-79188287	MS.gene31004:CDS
AGAAAGTACAGTGTCTGGAT+TGG	0.483200	3.3:-79187926	MS.gene31004:CDS
AGCCTGGATGGCCACATACA+TGG	0.486225	3.3:+79188619	None:intergenic
CAGACACTGTACTTTCTCTC+TGG	0.490948	3.3:+79187932	None:intergenic
TCACACTGTGCCAATCTATG+AGG	0.492803	3.3:-79188449	MS.gene31004:CDS
ACTGACAATACCGTGCTCAA+TGG	0.496612	3.3:+79188802	None:intergenic
AAGTACAGTGTCTGGATTGG+AGG	0.497575	3.3:-79187923	MS.gene31004:CDS
ATGAAGATCCTCACTGAGAG+AGG	0.498979	3.3:-79188361	MS.gene31004:CDS
AAGGGTGAATATGACGAGTC+TGG	0.499493	3.3:-79187755	MS.gene31004:CDS
CAGCATGAAGATTAAGGTTG+TGG	0.500086	3.3:-79187960	MS.gene31004:CDS
GTTCACCACCTCAGCTGAGC+GGG	0.502382	3.3:-79188332	MS.gene31004:CDS
AGTGCATAACCCTCATAGAT+TGG	0.503175	3.3:+79188439	None:intergenic
CCATTCCGATCATTGATGGT+TGG	0.507915	3.3:+79188143	None:intergenic
CTCATACGGTCAGCAATACC+AGG	0.512812	3.3:+79188010	None:intergenic
TGCTGGTGATGATGCTCCTA+GGG	0.516201	3.3:-79188948	MS.gene31004:CDS
CATAGAGGGAGAGGACAGCC+TGG	0.522013	3.3:+79188603	None:intergenic
TTGGGCTTCGTCACCAACAT+AGG	0.522846	3.3:+79188856	None:intergenic
CAGTTCCATTGTCACAAACA+AGG	0.524372	3.3:+79189082	None:intergenic
GGCAACATTGTTCTTAGTGG+TGG	0.526272	3.3:-79188046	MS.gene31004:CDS
GAGCAAGGAGATCACTGCCC+TGG	0.526620	3.3:-79187990	MS.gene31004:CDS
CAGTGATCTCCTTGCTCATA+CGG	0.530919	3.3:+79187996	None:intergenic
CCAACCATCAATGATCGGAA+TGG	0.531135	3.3:-79188143	MS.gene31004:CDS
CATGGTTGGTATGGGTCAAA+AGG	0.532081	3.3:-79188882	MS.gene31004:CDS
ATTGTGTTGGATTCCGGCGA+TGG	0.537139	3.3:-79188478	MS.gene31004:CDS
ACTGGTGTCATGGTTGGTAT+GGG	0.539815	3.3:-79188890	MS.gene31004:CDS
ACCTCGTCATACTGGTGTCA+TGG	0.540702	3.3:-79188900	MS.gene31004:CDS
GACAATTTCCCGCTCAGCTG+AGG	0.541645	3.3:+79188324	None:intergenic
ACACTGTACTTTCTCTCTGG+TGG	0.545670	3.3:+79187935	None:intergenic
ATGATCGGAATGGAAGCTGC+TGG	0.546973	3.3:-79188133	MS.gene31004:CDS
TGTACGACCACTTGCATAGA+GGG	0.561313	3.3:+79188589	None:intergenic
AGTTCCATTGTCACAAACAA+GGG	0.561709	3.3:+79189083	None:intergenic
TGTCAGTAACTGGGATGACA+TGG	0.562581	3.3:-79188786	MS.gene31004:CDS
GAGGGAGAGGACAGCCTGGA+TGG	0.565012	3.3:+79188607	None:intergenic
TTGTACGACCACTTGCATAG+AGG	0.570654	3.3:+79188588	None:intergenic
AGACTCGTCATATTCACCCT+TGG	0.570952	3.3:+79187757	None:intergenic
AATTTCCCGCTCAGCTGAGG+TGG	0.571031	3.3:+79188327	None:intergenic
AAGTTCTTGTTCATAATCCA+AGG	0.571032	3.3:+79188270	None:intergenic
ATACTTGGAAACACAGCCCT+AGG	0.573620	3.3:+79188932	None:intergenic
CGTCATACTGGTGTCATGGT+TGG	0.573856	3.3:-79188896	MS.gene31004:CDS
CTTCATGCTGCTAGGAGCCA+GGG	0.577950	3.3:+79187973	None:intergenic
GAAGCATTTCCTGTGGACAA+TGG	0.580709	3.3:+79187727	None:intergenic
CAAGCTTCTCCTTTATGTCA+CGG	0.584330	3.3:+79188302	None:intergenic
GACCACTTGCATAGAGGGAG+AGG	0.585397	3.3:+79188594	None:intergenic
CTGGCCCATCCATTGTCCAC+AGG	0.585546	3.3:-79187736	MS.gene31004:CDS
GCAAAAGATGGCAGATGCTG+AGG	0.585999	3.3:-79189115	None:intergenic
CAATGTGCCCGCCATGTATG+TGG	0.588880	3.3:-79188630	MS.gene31004:CDS
TGGATGGCCACATACATGGC+GGG	0.589918	3.3:+79188623	None:intergenic
GACGAAGCCCAATCCAAAAG+AGG	0.590961	3.3:-79188845	MS.gene31004:CDS
GATATCAGAAAAGATCTGTA+CGG	0.594697	3.3:-79188067	MS.gene31004:CDS
GTCCTCTCCCTCTATGCAAG+TGG	0.594901	3.3:-79188596	MS.gene31004:CDS
ATTTCCTGTGGACAATGGAT+GGG	0.598758	3.3:+79187732	None:intergenic
ACCTTAATCTTCATGCTGCT+AGG	0.600175	3.3:+79187965	None:intergenic
TTTGCAGATGTGGATATCCA+AGG	0.604467	3.3:-79187774	MS.gene31004:intron
CTCAAGTACCCCATTGAGCA+CGG	0.608960	3.3:-79188812	MS.gene31004:CDS
CACACTGTGCCAATCTATGA+GGG	0.612158	3.3:-79188448	MS.gene31004:CDS
TATTGCTGACCGTATGAGCA+AGG	0.626661	3.3:-79188005	MS.gene31004:CDS
GAGCCTCAGTTAGAAGCACT+GGG	0.630481	3.3:+79188708	None:intergenic
AGTGTGACTCACACCATCGC+CGG	0.631174	3.3:+79188465	None:intergenic
GCACGGTATTGTCAGTAACT+GGG	0.632162	3.3:-79188795	MS.gene31004:CDS
GGTCAAAAGGATGCCTATGT+TGG	0.633441	3.3:-79188869	MS.gene31004:CDS
TCCAAACGAAGGATAGCATG+TGG	0.637382	3.3:+79188415	None:intergenic
TTGTGACAATGGAACTGGAA+TGG	0.639550	3.3:-79189076	MS.gene31004:CDS
CTCTATCATGAAGTGTGATG+TGG	0.640270	3.3:-79188089	MS.gene31004:CDS
GGACTTAGAAGCATTTCCTG+TGG	0.642629	3.3:+79187720	None:intergenic
GGAAAAGGACTTCTGGGCAA+CGG	0.648496	3.3:+79188164	None:intergenic
GGAAAGTACTGAGAGAAGCA+AGG	0.656348	3.3:+79187894	None:intergenic
GTTCCATTGTCACAAACAAG+GGG	0.658903	3.3:+79189084	None:intergenic
CAATGGAACTGGAATGGTGA+AGG	0.661223	3.3:-79189070	MS.gene31004:intron
TGAAGATCCTCACTGAGAGA+GGG	0.661425	3.3:-79188360	MS.gene31004:CDS
TTATCACAATTGGAGCTGAG+AGG	0.664936	3.3:-79188189	MS.gene31004:CDS
TGAGGCTCCACTTAACCCAA+AGG	0.668440	3.3:-79188693	MS.gene31004:CDS
TGACACCAGTATGACGAGGT+CGG	0.672228	3.3:+79188903	None:intergenic
GCACCCAGTGCTTCTAACTG+AGG	0.673440	3.3:-79188711	MS.gene31004:CDS
CCAAACGAAGGATAGCATGT+GGG	0.675471	3.3:+79188416	None:intergenic
TTGCAGATGTGGATATCCAA+GGG	0.681771	3.3:-79187773	MS.gene31004:intron
CTGGATGGCCACATACATGG+CGG	0.687535	3.3:+79188622	None:intergenic
CTTCATGATAGAGTTGTAGG+TGG	0.694993	3.3:+79188099	None:intergenic
GACCAGCAAGATCCAAACGA+AGG	0.704830	3.3:+79188404	None:intergenic
ACATGTACCCTCTCTCAGTG+AGG	0.709732	3.3:+79188353	None:intergenic
TGACAATACCGTGCTCAATG+GGG	0.720666	3.3:+79188804	None:intergenic
TGTTCACCACCTCAGCTGAG+CGG	0.722178	3.3:-79188333	MS.gene31004:CDS
ACCATGACACCAGTATGACG+AGG	0.732971	3.3:+79188899	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTCAAAAATGAAAAGATTGA+GGG	+	chr3.3:79188328-79188347	None:intergenic	20.0%
!!	TTTCAAAAATGAAAAGATTG+AGG	+	chr3.3:79188329-79188348	None:intergenic	20.0%
!!!	AATCTTTTCATTTTTGAAAC+AGG	-	chr3.3:79188330-79188349	MS.gene31004:CDS	20.0%
	AAAAACTATGAACTTCCTGA+TGG	-	chr3.3:79188615-79188634	MS.gene31004:CDS	30.0%
	AAGTTCTTGTTCATAATCCA+AGG	+	chr3.3:79188565-79188584	None:intergenic	30.0%
	GAAAGTCTCAAACATGATTT+GGG	+	chr3.3:79188183-79188202	None:intergenic	30.0%
	GACATCACATACATTATACA+TGG	+	chr3.3:79189001-79189020	None:intergenic	30.0%
	GATATCAGAAAAGATCTGTA+CGG	-	chr3.3:79188765-79188784	MS.gene31004:CDS	30.0%
	TGAAAGTCTCAAACATGATT+TGG	+	chr3.3:79188184-79188203	None:intergenic	30.0%
!	AAGAATACCTCTTTTGGATT+GGG	+	chr3.3:79187997-79188016	None:intergenic	30.0%
!	TAAGAATACCTCTTTTGGAT+TGG	+	chr3.3:79187998-79188017	None:intergenic	30.0%
!!!	TTGTTTTTGTTTTGCAGATG+TGG	-	chr3.3:79189048-79189067	MS.gene31004:intron	30.0%
!!!	TTTTGAAACAGGTATTGTGT+TGG	-	chr3.3:79188341-79188360	MS.gene31004:CDS	30.0%
	AAGATTGAGGGACAGAATAA+TGG	+	chr3.3:79188316-79188335	None:intergenic	35.0%
	ACACTTCATGATAGAGTTGT+AGG	+	chr3.3:79188739-79188758	None:intergenic	35.0%
	AGTTCCATTGTCACAAACAA+GGG	+	chr3.3:79187752-79187771	None:intergenic	35.0%
	GATGGACAAGTTATCACAAT+TGG	-	chr3.3:79188633-79188652	MS.gene31004:CDS	35.0%
	GTGATAAAATAATCACCTGC+TGG	+	chr3.3:79188962-79188981	None:intergenic	35.0%
	TTCATCTACAATTTGTGTGC+AGG	-	chr3.3:79187854-79187873	MS.gene31004:intron	35.0%
!	ATTGTGATAACTTGTCCATC+AGG	+	chr3.3:79188633-79188652	None:intergenic	35.0%
!	CTTTTCCAACCATCAATGAT+CGG	-	chr3.3:79188684-79188703	MS.gene31004:CDS	35.0%
!	GAGAGTAAGAATACCTCTTT+TGG	+	chr3.3:79188003-79188022	None:intergenic	35.0%
!	TTGGGTCATCTTTTCTCTAT+TGG	+	chr3.3:79188165-79188184	None:intergenic	35.0%
!!!	ATCTTTTCTCTATTGGCCTT+TGG	+	chr3.3:79188158-79188177	None:intergenic	35.0%
!!!	TCTTTTCTCTATTGGCCTTT+GGG	+	chr3.3:79188157-79188176	None:intergenic	35.0%
	ACCTTAATCTTCATGCTGCT+AGG	+	chr3.3:79188870-79188889	None:intergenic	40.0%
	AGTGCATAACCCTCATAGAT+TGG	+	chr3.3:79188396-79188415	None:intergenic	40.0%
	ATGGTTGGAAAAGGACTTCT+GGG	+	chr3.3:79188677-79188696	None:intergenic	40.0%
	ATTTCCTGTGGACAATGGAT+GGG	+	chr3.3:79189103-79189122	None:intergenic	40.0%
	CAAGCTTCTCCTTTATGTCA+CGG	+	chr3.3:79188533-79188552	None:intergenic	40.0%
	CAGCATGAAGATTAAGGTTG+TGG	-	chr3.3:79188872-79188891	MS.gene31004:CDS	40.0%
	CAGTTCCATTGTCACAAACA+AGG	+	chr3.3:79187753-79187772	None:intergenic	40.0%
	CTCTATCATGAAGTGTGATG+TGG	-	chr3.3:79188743-79188762	MS.gene31004:CDS	40.0%
	CTTCATGATAGAGTTGTAGG+TGG	+	chr3.3:79188736-79188755	None:intergenic	40.0%
	CTTGTTTGTGACAATGGAAC+TGG	-	chr3.3:79187751-79187770	MS.gene31004:CDS	40.0%
	GGAAATTGTCCGTGACATAA+AGG	-	chr3.3:79188521-79188540	MS.gene31004:intron	40.0%
	GTTCCATTGTCACAAACAAG+GGG	+	chr3.3:79187751-79187770	None:intergenic	40.0%
	TACGGCAACATTGTTCTTAG+TGG	-	chr3.3:79188783-79188802	MS.gene31004:CDS	40.0%
	TCCTAGCAGCATGAAGATTA+AGG	-	chr3.3:79188866-79188885	MS.gene31004:CDS	40.0%
	TTATCACAATTGGAGCTGAG+AGG	-	chr3.3:79188643-79188662	MS.gene31004:CDS	40.0%
	TTGCAGATGTGGATATCCAA+GGG	-	chr3.3:79189059-79189078	MS.gene31004:intron	40.0%
	TTGTGACAATGGAACTGGAA+TGG	-	chr3.3:79187756-79187775	MS.gene31004:CDS	40.0%
	TTTGCAGATGTGGATATCCA+AGG	-	chr3.3:79189058-79189077	MS.gene31004:intron	40.0%
!	ACAGGTATTGTGTTGGATTC+CGG	-	chr3.3:79188348-79188367	MS.gene31004:CDS	40.0%
!	AGAAAGTACAGTGTCTGGAT+TGG	-	chr3.3:79188906-79188925	MS.gene31004:CDS	40.0%
!	CGATCATTGATGGTTGGAAA+AGG	+	chr3.3:79188686-79188705	None:intergenic	40.0%
!	GCTGTGTTTCCAAGTATTGT+TGG	-	chr3.3:79187906-79187925	MS.gene31004:CDS	40.0%
	AAGGGTGAATATGACGAGTC+TGG	-	chr3.3:79189077-79189096	MS.gene31004:CDS	45.0%
	ACACTGTACTTTCTCTCTGG+TGG	+	chr3.3:79188900-79188919	None:intergenic	45.0%
	ACTGACAATACCGTGCTCAA+TGG	+	chr3.3:79188033-79188052	None:intergenic	45.0%
	AGACTCGTCATATTCACCCT+TGG	+	chr3.3:79189078-79189097	None:intergenic	45.0%
	AGCACGGTATTGTCAGTAAC+TGG	-	chr3.3:79188036-79188055	MS.gene31004:CDS	45.0%
	ATACTTGGAAACACAGCCCT+AGG	+	chr3.3:79187903-79187922	None:intergenic	45.0%
	ATCCTTCGTTTGGATCTTGC+TGG	-	chr3.3:79188426-79188445	MS.gene31004:CDS	45.0%
	ATGAAGATCCTCACTGAGAG+AGG	-	chr3.3:79188471-79188490	MS.gene31004:CDS	45.0%
	CAATGGAACTGGAATGGTGA+AGG	-	chr3.3:79187762-79187781	MS.gene31004:CDS	45.0%
	CACACTGTGCCAATCTATGA+GGG	-	chr3.3:79188384-79188403	MS.gene31004:CDS	45.0%
	CAGACACTGTACTTTCTCTC+TGG	+	chr3.3:79188903-79188922	None:intergenic	45.0%
	CAGTGATCTCCTTGCTCATA+CGG	+	chr3.3:79188839-79188858	None:intergenic	45.0%
	CATTTCCTGTGGACAATGGA+TGG	+	chr3.3:79189104-79189123	None:intergenic	45.0%
	CCAAACGAAGGATAGCATGT+GGG	+	chr3.3:79188419-79188438	None:intergenic	45.0%
	CCAACCATCAATGATCGGAA+TGG	-	chr3.3:79188689-79188708	MS.gene31004:CDS	45.0%
	CTGACAATACCGTGCTCAAT+GGG	+	chr3.3:79188032-79188051	None:intergenic	45.0%
	GAAGCTTGCATATGTTGCCT+TGG	-	chr3.3:79188545-79188564	MS.gene31004:intron	45.0%
	GATGGTTGGAAAAGGACTTC+TGG	+	chr3.3:79188678-79188697	None:intergenic	45.0%
	GCACGGTATTGTCAGTAACT+GGG	-	chr3.3:79188037-79188056	MS.gene31004:CDS	45.0%
	GCTTCCATTCCGATCATTGA+TGG	+	chr3.3:79188696-79188715	None:intergenic	45.0%
	GGCAACATTGTTCTTAGTGG+TGG	-	chr3.3:79188786-79188805	MS.gene31004:CDS	45.0%
	GGTCAAAAGGATGCCTATGT+TGG	-	chr3.3:79187963-79187982	MS.gene31004:CDS	45.0%
	GGTGGTTCAACTATGTTTCC+TGG	-	chr3.3:79188804-79188823	MS.gene31004:CDS	45.0%
	TATGCAAGTGGTCGTACAAC+TGG	-	chr3.3:79188248-79188267	MS.gene31004:CDS	45.0%
	TATTGCTGACCGTATGAGCA+AGG	-	chr3.3:79188827-79188846	MS.gene31004:CDS	45.0%
	TCACACTGTGCCAATCTATG+AGG	-	chr3.3:79188383-79188402	MS.gene31004:CDS	45.0%
	TCCAAACGAAGGATAGCATG+TGG	+	chr3.3:79188420-79188439	None:intergenic	45.0%
	TCTACAATTTGTGTGCAGGC+TGG	-	chr3.3:79187858-79187877	MS.gene31004:intron	45.0%
	TGAAGATCCTCACTGAGAGA+GGG	-	chr3.3:79188472-79188491	MS.gene31004:CDS	45.0%
	TGACAATACCGTGCTCAATG+GGG	+	chr3.3:79188031-79188050	None:intergenic	45.0%
	TGTACGACCACTTGCATAGA+GGG	+	chr3.3:79188246-79188265	None:intergenic	45.0%
	TGTCAGTAACTGGGATGACA+TGG	-	chr3.3:79188046-79188065	MS.gene31004:CDS	45.0%
	TTCTCTCAGTACTTTCCAGC+AGG	-	chr3.3:79188944-79188963	MS.gene31004:CDS	45.0%
	TTGTACGACCACTTGCATAG+AGG	+	chr3.3:79188247-79188266	None:intergenic	45.0%
!	AAGTACAGTGTCTGGATTGG+AGG	-	chr3.3:79188909-79188928	MS.gene31004:CDS	45.0%
!	CAACCCCTTGTTTGTGACAA+TGG	-	chr3.3:79187745-79187764	MS.gene31004:CDS	45.0%
!	CAGAGAGAAAGTACAGTGTC+TGG	-	chr3.3:79188901-79188920	MS.gene31004:CDS	45.0%
!	CATGGTTGGTATGGGTCAAA+AGG	-	chr3.3:79187950-79187969	MS.gene31004:CDS	45.0%
!	CCATTCCGATCATTGATGGT+TGG	+	chr3.3:79188692-79188711	None:intergenic	45.0%
!	GAAGCATTTCCTGTGGACAA+TGG	+	chr3.3:79189108-79189127	None:intergenic	45.0%
!!	ACTGGTGTCATGGTTGGTAT+GGG	-	chr3.3:79187942-79187961	MS.gene31004:CDS	45.0%
!!	CTATTGGCCTTTGGGTTAAG+TGG	+	chr3.3:79188149-79188168	None:intergenic	45.0%
!!	GGAAAGTACTGAGAGAAGCA+AGG	+	chr3.3:79188941-79188960	None:intergenic	45.0%
!!	TACTGGTGTCATGGTTGGTA+TGG	-	chr3.3:79187941-79187960	MS.gene31004:CDS	45.0%
	ACATGTACCCTCTCTCAGTG+AGG	+	chr3.3:79188482-79188501	None:intergenic	50.0%
	ACCATGACACCAGTATGACG+AGG	+	chr3.3:79187936-79187955	None:intergenic	50.0%
	ATGATCGGAATGGAAGCTGC+TGG	-	chr3.3:79188699-79188718	MS.gene31004:CDS	50.0%
	ATTGTGTTGGATTCCGGCGA+TGG	-	chr3.3:79188354-79188373	MS.gene31004:CDS	50.0%
	CCCACATGCTATCCTTCGTT+TGG	-	chr3.3:79188416-79188435	MS.gene31004:CDS	50.0%
	CTCAAGTACCCCATTGAGCA+CGG	-	chr3.3:79188020-79188039	MS.gene31004:CDS	50.0%
	CTCATACGGTCAGCAATACC+AGG	+	chr3.3:79188825-79188844	None:intergenic	50.0%
	GACCAGCAAGATCCAAACGA+AGG	+	chr3.3:79188431-79188450	None:intergenic	50.0%
	GACGAAGCCCAATCCAAAAG+AGG	-	chr3.3:79187987-79188006	MS.gene31004:CDS	50.0%
	GGAAAAGGACTTCTGGGCAA+CGG	+	chr3.3:79188671-79188690	None:intergenic	50.0%
	GGGATGACATGGAGAAGATC+TGG	-	chr3.3:79188057-79188076	MS.gene31004:CDS	50.0%
	TGACACCAGTATGACGAGGT+CGG	+	chr3.3:79187932-79187951	None:intergenic	50.0%
	TGAGGCTCCACTTAACCCAA+AGG	-	chr3.3:79188139-79188158	MS.gene31004:CDS	50.0%
	TTGGGCTTCGTCACCAACAT+AGG	+	chr3.3:79187979-79187998	None:intergenic	50.0%
!	ACCTCGTCATACTGGTGTCA+TGG	-	chr3.3:79187932-79187951	MS.gene31004:CDS	50.0%
!	TGCTGGTGATGATGCTCCTA+GGG	-	chr3.3:79187884-79187903	MS.gene31004:intron	50.0%
!	TTGCTGGTGATGATGCTCCT+AGG	-	chr3.3:79187883-79187902	MS.gene31004:intron	50.0%
!!	CGTCATACTGGTGTCATGGT+TGG	-	chr3.3:79187936-79187955	MS.gene31004:CDS	50.0%
!!	GAGCCTCAGTTAGAAGCACT+GGG	+	chr3.3:79188127-79188146	None:intergenic	50.0%
	AATTTCCCGCTCAGCTGAGG+TGG	+	chr3.3:79188508-79188527	None:intergenic	55.0%
	AGCCTGGATGGCCACATACA+TGG	+	chr3.3:79188216-79188235	None:intergenic	55.0%
	AGTGTGACTCACACCATCGC+CGG	+	chr3.3:79188370-79188389	None:intergenic	55.0%
	CAATGTGCCCGCCATGTATG+TGG	-	chr3.3:79188202-79188221	MS.gene31004:CDS	55.0%
	CGAGGTCGGCCAACAATACT+TGG	+	chr3.3:79187918-79187937	None:intergenic	55.0%
	CTGGATGGCCACATACATGG+CGG	+	chr3.3:79188213-79188232	None:intergenic	55.0%
	CTTCATGCTGCTAGGAGCCA+GGG	+	chr3.3:79188862-79188881	None:intergenic	55.0%
	GACAATTTCCCGCTCAGCTG+AGG	+	chr3.3:79188511-79188530	None:intergenic	55.0%
	GACCACTTGCATAGAGGGAG+AGG	+	chr3.3:79188241-79188260	None:intergenic	55.0%
	GCACCCAGTGCTTCTAACTG+AGG	-	chr3.3:79188121-79188140	MS.gene31004:CDS	55.0%
	GTCCTCTCCCTCTATGCAAG+TGG	-	chr3.3:79188236-79188255	MS.gene31004:CDS	55.0%
	TCTTCATGCTGCTAGGAGCC+AGG	+	chr3.3:79188863-79188882	None:intergenic	55.0%
	TGGATGGCCACATACATGGC+GGG	+	chr3.3:79188212-79188231	None:intergenic	55.0%
	TGTGTGCAGGCTGGATTTGC+TGG	-	chr3.3:79187867-79187886	MS.gene31004:intron	55.0%
	TGTTCACCACCTCAGCTGAG+CGG	-	chr3.3:79188499-79188518	MS.gene31004:intron	55.0%
!	GGAGCCTCAGTTAGAAGCAC+TGG	+	chr3.3:79188128-79188147	None:intergenic	55.0%
!!	AGAAGCACTGGGTGCTCTTC+AGG	+	chr3.3:79188116-79188135	None:intergenic	55.0%
	CATAGAGGGAGAGGACAGCC+TGG	+	chr3.3:79188232-79188251	None:intergenic	60.0%
	CGCCATGTATGTGGCCATCC+AGG	-	chr3.3:79188211-79188230	MS.gene31004:CDS	60.0%
	CTGGCCCATCCATTGTCCAC+AGG	-	chr3.3:79189096-79189115	MS.gene31004:CDS	60.0%
	GAGCAAGGAGATCACTGCCC+TGG	-	chr3.3:79188842-79188861	MS.gene31004:CDS	60.0%
	GTTCACCACCTCAGCTGAGC+GGG	-	chr3.3:79188500-79188519	MS.gene31004:intron	60.0%
	GTTGGCCGACCTCGTCATAC+TGG	-	chr3.3:79187924-79187943	MS.gene31004:CDS	60.0%
	GAGGGAGAGGACAGCCTGGA+TGG	+	chr3.3:79188228-79188247	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	79187724	79189130	79187724	ID=MS.gene31004
chr3.3	mRNA	79187724	79189130	79187724	ID=MS.gene31004.t1;Parent=MS.gene31004
chr3.3	exon	79189071	79189130	79189071	ID=MS.gene31004.t1.exon1;Parent=MS.gene31004.t1
chr3.3	CDS	79189071	79189130	79189071	ID=cds.MS.gene31004.t1;Parent=MS.gene31004.t1
chr3.3	exon	79188585	79188978	79188585	ID=MS.gene31004.t1.exon2;Parent=MS.gene31004.t1
chr3.3	CDS	79188585	79188978	79188585	ID=cds.MS.gene31004.t1;Parent=MS.gene31004.t1
chr3.3	exon	79187889	79188502	79187889	ID=MS.gene31004.t1.exon3;Parent=MS.gene31004.t1
chr3.3	CDS	79187889	79188502	79187889	ID=cds.MS.gene31004.t1;Parent=MS.gene31004.t1
chr3.3	exon	79187724	79187789	79187724	ID=MS.gene31004.t1.exon4;Parent=MS.gene31004.t1
chr3.3	CDS	79187724	79187789	79187724	ID=cds.MS.gene31004.t1;Parent=MS.gene31004.t1

Gene Sequence

>MS.gene31004

ATGGCAGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGGTTAGTAATTCAAAAAAAAAATCTGTCATTTTTGCGTGTTTGATTTTTGTTTTTGTTACTGAACGATGTGTTCATCTACAATTTGTGTGCAGGCTGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCAAGTATTGTTGGCCGACCTCGTCATACTGGTGTCATGGTTGGTATGGGTCAAAAGGATGCCTATGTTGGTGACGAAGCCCAATCCAAAAGAGGTATTCTTACTCTCAAGTACCCCATTGAGCACGGTATTGTCAGTAACTGGGATGACATGGAGAAGATCTGGCATCACACATTTTACAATGAATTGCGTGTTGCTCCTGAAGAGCACCCAGTGCTTCTAACTGAGGCTCCACTTAACCCAAAGGCCAATAGAGAAAAGATGACCCAAATCATGTTTGAGACTTTCAATGTGCCCGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTCTATGCAAGTGGTCGTACAACTGGTTCGTATTTTGACTATCTTTTTGAGAACATACTTTTGTCATTCCATTATTCTGTCCCTCAATCTTTTCATTTTTGAAACAGGTATTGTGTTGGATTCCGGCGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGTTATGCACTCCCACATGCTATCCTTCGTTTGGATCTTGCTGGTCGTGATCTAACTGATTCTTTGATGAAGATCCTCACTGAGAGAGGGTACATGTTCACCACCTCAGCTGAGCGGGAAATTGTCCGTGACATAAAGGAGAAGCTTGCATATGTTGCCTTGGATTATGAACAAGAACTTGAGACTGCAAAGAGCAGTTCTTCAATTGAGAAAAACTATGAACTTCCTGATGGACAAGTTATCACAATTGGAGCTGAGAGGTTCCGTTGCCCAGAAGTCCTTTTCCAACCATCAATGATCGGAATGGAAGCTGCTGGAATTCACGAGACCACCTACAACTCTATCATGAAGTGTGATGTGGATATCAGAAAAGATCTGTACGGCAACATTGTTCTTAGTGGTGGTTCAACTATGTTTCCTGGTATTGCTGACCGTATGAGCAAGGAGATCACTGCCCTGGCTCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTACAGTGTCTGGATTGGAGGATCAATCCTTGCTTCTCTCAGTACTTTCCAGCAGGTGATTATTTTATCACAGATTAGCACATTTTGCCATGTATAATGTATGTGATGTCAATTTTATCTAATTCTACAATTTATTTTTGTTTTTGTTTTGCAGATGTGGATATCCAAGGGTGAATATGACGAGTCTGGCCCATCCATTGTCCACAGGAAATGCTTCTAA

Protein sequence

>MS.gene31004.t1

MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYMFTTSAEREIVRDIKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF