AlfalfaGEDB | MS.gene34589

M. sativa cultivar XinJiangDaYe / MS.gene34589

KEGG: K22547
GO: -
PFAM: PF00581.23

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34589.t1	XP_003595727.2	98.5	137	2	0	1	137	1	137	6.80E-73	283.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34589.t1	Q8RUD6	66.2	133	43	2	5	137	36	166	6.1e-46	184.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34589.t1	G7IGQ0	98.5	137	2	0	1	137	1	137	4.9e-73	283.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049148	MS.gene34589	0.800465	1.42E-48	-1.69E-46
MS.gene049259	MS.gene34589	0.855811	4.91E-62	-1.69E-46
MS.gene049320	MS.gene34589	-0.806875	6.65E-50	-1.69E-46
MS.gene049402	MS.gene34589	0.816323	5.87E-52	-1.69E-46
MS.gene049483	MS.gene34589	0.801965	7.02E-49	-1.69E-46
MS.gene049611	MS.gene34589	0.813055	3.11E-51	-1.69E-46
MS.gene049634	MS.gene34589	0.844014	9.83E-59	-1.69E-46
MS.gene04986	MS.gene34589	0.819395	1.19E-52	-1.69E-46
MS.gene050163	MS.gene34589	-0.800321	1.52E-48	-1.69E-46
MS.gene050165	MS.gene34589	-0.827891	1.22E-54	-1.69E-46

Showing 1 to 10 of 67 entries

Previous1 2 3 4 5 6 7Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34589.t1	MTR_2g059890	98.540	137	2	0	1	137	1	137	3.44e-100	283
MS.gene34589.t1	MTR_2g017630	89.781	137	14	0	1	137	1	137	4.73e-91	260
MS.gene34589.t1	MTR_2g059890	97.980	99	2	0	1	99	1	99	1.88e-68	201
MS.gene34589.t1	MTR_2g059890	97.980	99	2	0	1	99	1	99	5.26e-68	201
MS.gene34589.t1	MTR_2g059890	97.980	99	2	0	1	99	1	99	8.47e-68	202
MS.gene34589.t1	MTR_8g075420	54.867	113	48	2	9	119	12	123	7.13e-37	122
MS.gene34589.t1	MTR_5g022390	54.630	108	46	2	10	115	30	136	5.16e-33	113
MS.gene34589.t1	MTR_8g075420	55.556	90	37	2	9	96	12	100	1.10e-27	99.0
MS.gene34589.t1	MTR_5g023170	41.667	108	62	1	12	119	75	181	1.93e-26	98.2
MS.gene34589.t1	MTR_5g022390	56.000	75	30	2	10	82	30	103	1.60e-19	78.6

Showing 1 to 10 of 11 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34589.t1	AT2G21045	64.748	139	45	3	1	137	30	166	7.43e-61	185
MS.gene34589.t1	AT5G66170	42.975	121	66	2	1	119	5	124	1.01e-32	112
MS.gene34589.t1	AT2G17850	48.739	119	58	2	3	119	25	142	9.90e-32	110
MS.gene34589.t1	AT5G66170	43.089	123	65	3	1	119	5	126	3.30e-31	108
MS.gene34589.t1	AT5G66040	45.370	108	58	1	12	119	10	116	6.45e-28	100
MS.gene34589.t1	AT4G35770	42.056	107	57	1	22	128	81	182	7.88e-26	96.3
MS.gene34589.t1	AT2G17850	38.411	151	58	3	3	119	25	174	5.93e-25	94.4
MS.gene34589.t1	AT5G66170	40.816	98	55	2	1	96	5	101	1.19e-22	87.0
MS.gene34589.t1	AT2G17850	47.826	92	45	2	3	92	25	115	2.17e-22	86.3
MS.gene34589.t1	AT4G35770	42.683	82	47	0	22	103	81	162	4.92e-18	76.3

Showing 1 to 10 of 13 entries

Previous1 2Next

Find 32 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATATTGTTAACATGGG+GGG	0.595696	4.3:+59068789	MS.gene34589:CDS
AAAGATCTGCTAGATTCATC+TGG	0.488656	4.3:+59066760	MS.gene34589:CDS
AAATATAATGGACACCACAA+AGG	0.664806	4.3:+59066605	None:intergenic
AGAAGCAATATATAAGAGTG+AGG	0.598950	4.3:+59067272	MS.gene34589:CDS
AGATGAATCTAGCAGATCTT+TGG	0.407928	4.3:-59066758	None:intergenic
AGGAAGATCAAGTCGAGCCT+GGG	0.580327	4.3:+59067437	MS.gene34589:CDS
ATTCAGGCTTGTAATGCTGG+AGG	0.667532	4.3:+59067417	MS.gene34589:intron
ATTTAAACATATTGTTAACA+TGG	0.515720	4.3:+59068785	MS.gene34589:CDS
CAAATTCAGGCTTGTAATGC+TGG	0.378391	4.3:+59067414	MS.gene34589:intron
CCACTGAAATAGGACTGTGG+AGG	0.675906	4.3:+59066890	MS.gene34589:intron

Showing 1 to 10 of 32 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACATATTGTTAACATGGG+GGG	+	chr4.3:59068789-59068808	MS.gene34589:CDS	30.0%
AAGAAATTTAGGCATGCTAA+AGG	-	chr4.3:59068585-59068604	None:intergenic	30.0%
AGAAATTTAGGCATGCTAAA+GGG	-	chr4.3:59068584-59068603	None:intergenic	30.0%
AGAAGCAATATATAAGAGTG+AGG	+	chr4.3:59067272-59067291	MS.gene34589:CDS	30.0%
GACAATGCATAATATATGCA+AGG	+	chr4.3:59067685-59067704	MS.gene34589:intron	30.0%
GTCATAGACTTACTGAATTA+TGG	-	chr4.3:59067470-59067489	None:intergenic	30.0%
GTTACAATTATCTTGATGTG+AGG	+	chr4.3:59066782-59066801	MS.gene34589:CDS	30.0%
TCTACTTGGTTAACAAAATC+TGG	-	chr4.3:59067255-59067274	None:intergenic	30.0%
TGATGTGAGGTAATTAACAA+AGG	+	chr4.3:59066795-59066814	MS.gene34589:intron	30.0%
TGCATAATATATGCAAGGTT+CGG	+	chr4.3:59067690-59067709	MS.gene34589:intron	30.0%

Showing 1 to 10 of 118 entries

Previous1 2 3 4 5…12Next

Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	59066612	59068899	59066612	ID=MS.gene34589
chr4.3	mRNA	59066612	59068899	59066612	ID=MS.gene34589.t1;Parent=MS.gene34589
chr4.3	exon	59066612	59066628	59066612	ID=MS.gene34589.t1.exon1;Parent=MS.gene34589.t1
chr4.3	CDS	59066612	59066628	59066612	ID=cds.MS.gene34589.t1;Parent=MS.gene34589.t1
chr4.3	exon	59066723	59066803	59066723	ID=MS.gene34589.t1.exon2;Parent=MS.gene34589.t1
chr4.3	CDS	59066723	59066803	59066723	ID=cds.MS.gene34589.t1;Parent=MS.gene34589.t1
chr4.3	exon	59066902	59066975	59066902	ID=MS.gene34589.t1.exon3;Parent=MS.gene34589.t1
chr4.3	CDS	59066902	59066975	59066902	ID=cds.MS.gene34589.t1;Parent=MS.gene34589.t1
chr4.3	exon	59067238	59067308	59067238	ID=MS.gene34589.t1.exon4;Parent=MS.gene34589.t1
chr4.3	CDS	59067238	59067308	59067238	ID=cds.MS.gene34589.t1;Parent=MS.gene34589.t1
chr4.3	exon	59067423	59067476	59067423	ID=MS.gene34589.t1.exon5;Parent=MS.gene34589.t1
chr4.3	CDS	59067423	59067476	59067423	ID=cds.MS.gene34589.t1;Parent=MS.gene34589.t1
chr4.3	exon	59068783	59068899	59068783	ID=MS.gene34589.t1.exon6;Parent=MS.gene34589.t1
chr4.3	CDS	59068783	59068899	59068783	ID=cds.MS.gene34589.t1;Parent=MS.gene34589.t1

Gene Sequence

>MS.gene34589

ATGGACACCACAAAGGAGTAAGAGTTTCAAATATTTTCCATTCCATTCTATATTATGTTATGGATGTAATTAAGTCACATTTAAACTCTGATTTATCTCTAATATTTGCAGTCATCAAGATGTTGTTACCTTAGATGTCCATGCTACCAAAGATCTGCTAGATTCATCTGGTTACAATTATCTTGATGTGAGGTAATTAACAAAGGACCCAGTTTCTTCATTTTTAATTTTCATAATACTTTTAAAAGAAGAAACCAAAGTCTTTATCTTTCTTTTTTCCACTGAAATAGGACTGTGGAGGAATTCAATAAAAGCCATGTTGAGAATGCTATTAACGTCCCCTATTTGTTCAGCACAGAAGAAGGTAATATGGTAAATTTACTTCACTTGTCTTCAGATTCAATTTTTTACTCCTTATGGGCAGAGGCAGCTACAAAGTATGAATAATAATAAATTTAACAAATTTAATTAGTTTGTAAATATTAATAGATGCTCAATCAGAATTTTATGATTTTGATATGTGATAATATGATTTTCAAAATTGTATCCATAAATATCTAATTGGTGATATATCAAATTAAACTGTTACTCATATAGCAAATGACGTGCTTACAAATGATCAACAGGACGGGTGAAAAATCCAGATTTTGTTAACCAAGTAGAAGCAATATATAAGAGTGAGGATCACTTAATTGTGGTAAGAATAATTTATAGTCTTTTAGTTTTCTAAAATATAAAACAATATGCATAAATCAGGAAAAATTCAAATATATAAACACTGATGTATGATTATAATGGATTACAAATTCAGGCTTGTAATGCTGGAGGAAGATCAAGTCGAGCCTGGGTTGATCTCCATAATTCAGTAAGTCTATGACCAACCTCAAATTCTCAATTTTGATTATTGCTACTTATCTTTATTAATTTACCAAAAAATCAGGATTTCAATTATCTTAATTTAAATTTAGGCCCCGTTAGTTTCAATTTTTTCTAAAAAAAAAAAATCAATTTTATCATTTTTCAGTGTTTGTTTAAAAAAAAATTGTCCCCGTGAGCTTAGCTCAGTTGATAAAGACAATGCATAATATATGCAAGGTTCGGAGTTCGAATCCCGGCCACCACCAAAAACAAAATTAAAAAATCATTTTTTAGAAAAAAACTATTTTGACTCTAAAATAAAAAAAAAAAACTATTAGGACTTTTCCCAAAATCTATTTTTTTTAAATACAAGCAGGTAATACATAAACTAGTTAAAAATCATTTATTTTTTTGTAGTAAAAAGGCACAAATAGCCTCAGAATTTTTTTTTAGAATCTCTAAAAAAAAAACTCTAGACTTTTCTAACACAAAATCTATTTTTTTAAAGCTCAAACAAACAGACCCTTAATCATTTGAAAAAAAAAACATCAAATTTAAATTATTGTTATGTTTATTGCTAAGGAAAGATCATCTCCATTTGCTTAAAATAAATGAATAATTCTTTTTTTTTTTGACAAAATAAATGAATAATTCTATTTAGTGAGAGATAGATAAAAAAAAGTTCACCAAAAAAAAAAAAAAGATACAAAAATAAATAAAAATAGTAGGTCCTATCATTAAGTGAGTCCCATTAGTAATAATTAATTACTTTTTTTTTATAATTTCATTGTATTTTATCTCTCCGAGTCCCATTAGTAATAAATAATTAATTACTTTTTTTTAAAAAAATTTCATTGTATTTTTATCTCTCCAAATGAAAGAATTGAAGATGATAATAAATAGATCCTAACTCGTTTATCGCTAGCTAAGTGGTAACATTCCATGTAACTTCAACATACACAATTCAAATTTCATCATAGATGTTTGTAAAATGACCATTAAAAGCATCCACAATAGAGAAATTCATTTTGTGTACGTAATGGGTCTCATGGGTACACATTATTCATTTATATTTTTTTCTTCTAATAATAGTACTTAATAAGCACTCGATCCCTTTAGCATGCCTAAATTTCTTAACCGAGACCCACTAATCATTTGTCAATAACTCTATATCATTATATTTATTGTTTTTTTATATTAAAGAGGCATAAGACGCACGGATAGAATGAGTGCTTACTTGAGACCCTCCATCCATTAAGCATTCAAAATTATTTTTCTTTAATATATGATATGATGTTGTAATTAACGAGCAGGGATTTAAACATATTGTTAACATGGGGGGAGGCTACTCTGCGTGGGTGGATGCTGGATTTGCAGGTGATGACAAGCCTGCAGAAGAGCTTAAAACAAGTTGCAAGTTTCGTCCATGA

Protein sequence

>MS.gene34589.t1

MDTTKDHQDVVTLDVHATKDLLDSSGYNYLDVRTVEEFNKSHVENAINVPYLFSTEEGRVKNPDFVNQVEAIYKSEDHLIVACNAGGRSSRAWVDLHNSGFKHIVNMGGGYSAWVDAGFAGDDKPAEELKTSCKFRP