Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34589.t1 | XP_003595727.2 | 98.5 | 137 | 2 | 0 | 1 | 137 | 1 | 137 | 6.80E-73 | 283.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34589.t1 | Q8RUD6 | 66.2 | 133 | 43 | 2 | 5 | 137 | 36 | 166 | 6.1e-46 | 184.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34589.t1 | G7IGQ0 | 98.5 | 137 | 2 | 0 | 1 | 137 | 1 | 137 | 4.9e-73 | 283.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049148 | MS.gene34589 | 0.800465 | 1.42E-48 | -1.69E-46 |
| MS.gene049259 | MS.gene34589 | 0.855811 | 4.91E-62 | -1.69E-46 |
| MS.gene049320 | MS.gene34589 | -0.806875 | 6.65E-50 | -1.69E-46 |
| MS.gene049402 | MS.gene34589 | 0.816323 | 5.87E-52 | -1.69E-46 |
| MS.gene049483 | MS.gene34589 | 0.801965 | 7.02E-49 | -1.69E-46 |
| MS.gene049611 | MS.gene34589 | 0.813055 | 3.11E-51 | -1.69E-46 |
| MS.gene049634 | MS.gene34589 | 0.844014 | 9.83E-59 | -1.69E-46 |
| MS.gene04986 | MS.gene34589 | 0.819395 | 1.19E-52 | -1.69E-46 |
| MS.gene050163 | MS.gene34589 | -0.800321 | 1.52E-48 | -1.69E-46 |
| MS.gene050165 | MS.gene34589 | -0.827891 | 1.22E-54 | -1.69E-46 |
| MS.gene050173 | MS.gene34589 | 0.872496 | 3.04E-67 | -1.69E-46 |
| MS.gene050333 | MS.gene34589 | -0.818192 | 2.23E-52 | -1.69E-46 |
| MS.gene050381 | MS.gene34589 | 0.806775 | 6.98E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene34589 | -0.814735 | 1.32E-51 | -1.69E-46 |
| MS.gene050612 | MS.gene34589 | -0.835952 | 1.24E-56 | -1.69E-46 |
| MS.gene05079 | MS.gene34589 | 0.864361 | 1.28E-64 | -1.69E-46 |
| MS.gene050832 | MS.gene34589 | 0.808838 | 2.54E-50 | -1.69E-46 |
| MS.gene050833 | MS.gene34589 | 0.804678 | 1.93E-49 | -1.69E-46 |
| MS.gene051127 | MS.gene34589 | 0.819379 | 1.20E-52 | -1.69E-46 |
| MS.gene051138 | MS.gene34589 | 0.85524 | 7.20E-62 | -1.69E-46 |
| MS.gene05114 | MS.gene34589 | 0.835648 | 1.48E-56 | -1.69E-46 |
| MS.gene051364 | MS.gene34589 | 0.808272 | 3.36E-50 | -1.69E-46 |
| MS.gene051366 | MS.gene34589 | 0.815252 | 1.02E-51 | -1.69E-46 |
| MS.gene051367 | MS.gene34589 | 0.804988 | 1.66E-49 | -1.69E-46 |
| MS.gene051422 | MS.gene34589 | 0.807476 | 4.96E-50 | -1.69E-46 |
| MS.gene051810 | MS.gene34589 | -0.800719 | 1.26E-48 | -1.69E-46 |
| MS.gene051863 | MS.gene34589 | 0.818692 | 1.72E-52 | -1.69E-46 |
| MS.gene051949 | MS.gene34589 | -0.800577 | 1.35E-48 | -1.69E-46 |
| MS.gene053420 | MS.gene34589 | 0.831343 | 1.76E-55 | -1.69E-46 |
| MS.gene053488 | MS.gene34589 | 0.811213 | 7.83E-51 | -1.69E-46 |
| MS.gene053561 | MS.gene34589 | 0.858689 | 6.94E-63 | -1.69E-46 |
| MS.gene053887 | MS.gene34589 | 0.803819 | 2.91E-49 | -1.69E-46 |
| MS.gene054056 | MS.gene34589 | 0.852742 | 3.78E-61 | -1.69E-46 |
| MS.gene054057 | MS.gene34589 | 0.836073 | 1.16E-56 | -1.69E-46 |
| MS.gene054616 | MS.gene34589 | 0.817959 | 2.52E-52 | -1.69E-46 |
| MS.gene054707 | MS.gene34589 | 0.805913 | 1.06E-49 | -1.69E-46 |
| MS.gene054708 | MS.gene34589 | 0.809863 | 1.53E-50 | -1.69E-46 |
| MS.gene055124 | MS.gene34589 | 0.818037 | 2.42E-52 | -1.69E-46 |
| MS.gene055154 | MS.gene34589 | 0.837365 | 5.43E-57 | -1.69E-46 |
| MS.gene055202 | MS.gene34589 | 0.80904 | 2.30E-50 | -1.69E-46 |
| MS.gene055204 | MS.gene34589 | 0.802158 | 6.41E-49 | -1.69E-46 |
| MS.gene055751 | MS.gene34589 | -0.814263 | 1.68E-51 | -1.69E-46 |
| MS.gene055776 | MS.gene34589 | -0.818464 | 1.93E-52 | -1.69E-46 |
| MS.gene055942 | MS.gene34589 | 0.837739 | 4.35E-57 | -1.69E-46 |
| MS.gene056224 | MS.gene34589 | 0.838936 | 2.14E-57 | -1.69E-46 |
| MS.gene056504 | MS.gene34589 | -0.803546 | 3.31E-49 | -1.69E-46 |
| MS.gene056856 | MS.gene34589 | 0.826118 | 3.23E-54 | -1.69E-46 |
| MS.gene056857 | MS.gene34589 | 0.810238 | 1.27E-50 | -1.69E-46 |
| MS.gene057549 | MS.gene34589 | 0.80305 | 4.19E-49 | -1.69E-46 |
| MS.gene058068 | MS.gene34589 | 0.801255 | 9.81E-49 | -1.69E-46 |
| MS.gene058093 | MS.gene34589 | 0.81929 | 1.26E-52 | -1.69E-46 |
| MS.gene058099 | MS.gene34589 | 0.832044 | 1.18E-55 | -1.69E-46 |
| MS.gene058109 | MS.gene34589 | 0.819162 | 1.34E-52 | -1.69E-46 |
| MS.gene058117 | MS.gene34589 | 0.808036 | 3.77E-50 | -1.69E-46 |
| MS.gene058171 | MS.gene34589 | 0.823993 | 1.03E-53 | -1.69E-46 |
| MS.gene058173 | MS.gene34589 | 0.808915 | 2.45E-50 | -1.69E-46 |
| MS.gene058175 | MS.gene34589 | 0.827715 | 1.34E-54 | -1.69E-46 |
| MS.gene058268 | MS.gene34589 | 0.801741 | 7.80E-49 | -1.69E-46 |
| MS.gene058603 | MS.gene34589 | 0.813354 | 2.67E-51 | -1.69E-46 |
| MS.gene058773 | MS.gene34589 | -0.803872 | 2.83E-49 | -1.69E-46 |
| MS.gene058840 | MS.gene34589 | 0.808919 | 2.44E-50 | -1.69E-46 |
| MS.gene059022 | MS.gene34589 | -0.814652 | 1.38E-51 | -1.69E-46 |
| MS.gene05913 | MS.gene34589 | -0.80418 | 2.44E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene34589 | -0.806168 | 9.38E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene34589 | -0.812863 | 3.42E-51 | -1.69E-46 |
| MS.gene060762 | MS.gene34589 | -0.808895 | 2.47E-50 | -1.69E-46 |
| MS.gene060823 | MS.gene34589 | 0.805534 | 1.27E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34589.t1 | MTR_2g059890 | 98.540 | 137 | 2 | 0 | 1 | 137 | 1 | 137 | 3.44e-100 | 283 |
| MS.gene34589.t1 | MTR_2g017630 | 89.781 | 137 | 14 | 0 | 1 | 137 | 1 | 137 | 4.73e-91 | 260 |
| MS.gene34589.t1 | MTR_2g059890 | 97.980 | 99 | 2 | 0 | 1 | 99 | 1 | 99 | 1.88e-68 | 201 |
| MS.gene34589.t1 | MTR_2g059890 | 97.980 | 99 | 2 | 0 | 1 | 99 | 1 | 99 | 5.26e-68 | 201 |
| MS.gene34589.t1 | MTR_2g059890 | 97.980 | 99 | 2 | 0 | 1 | 99 | 1 | 99 | 8.47e-68 | 202 |
| MS.gene34589.t1 | MTR_8g075420 | 54.867 | 113 | 48 | 2 | 9 | 119 | 12 | 123 | 7.13e-37 | 122 |
| MS.gene34589.t1 | MTR_5g022390 | 54.630 | 108 | 46 | 2 | 10 | 115 | 30 | 136 | 5.16e-33 | 113 |
| MS.gene34589.t1 | MTR_8g075420 | 55.556 | 90 | 37 | 2 | 9 | 96 | 12 | 100 | 1.10e-27 | 99.0 |
| MS.gene34589.t1 | MTR_5g023170 | 41.667 | 108 | 62 | 1 | 12 | 119 | 75 | 181 | 1.93e-26 | 98.2 |
| MS.gene34589.t1 | MTR_5g022390 | 56.000 | 75 | 30 | 2 | 10 | 82 | 30 | 103 | 1.60e-19 | 78.6 |
| MS.gene34589.t1 | MTR_5g023170 | 43.529 | 85 | 47 | 1 | 12 | 96 | 75 | 158 | 7.55e-19 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34589.t1 | AT2G21045 | 64.748 | 139 | 45 | 3 | 1 | 137 | 30 | 166 | 7.43e-61 | 185 |
| MS.gene34589.t1 | AT5G66170 | 42.975 | 121 | 66 | 2 | 1 | 119 | 5 | 124 | 1.01e-32 | 112 |
| MS.gene34589.t1 | AT2G17850 | 48.739 | 119 | 58 | 2 | 3 | 119 | 25 | 142 | 9.90e-32 | 110 |
| MS.gene34589.t1 | AT5G66170 | 43.089 | 123 | 65 | 3 | 1 | 119 | 5 | 126 | 3.30e-31 | 108 |
| MS.gene34589.t1 | AT5G66040 | 45.370 | 108 | 58 | 1 | 12 | 119 | 10 | 116 | 6.45e-28 | 100 |
| MS.gene34589.t1 | AT4G35770 | 42.056 | 107 | 57 | 1 | 22 | 128 | 81 | 182 | 7.88e-26 | 96.3 |
| MS.gene34589.t1 | AT2G17850 | 38.411 | 151 | 58 | 3 | 3 | 119 | 25 | 174 | 5.93e-25 | 94.4 |
| MS.gene34589.t1 | AT5G66170 | 40.816 | 98 | 55 | 2 | 1 | 96 | 5 | 101 | 1.19e-22 | 87.0 |
| MS.gene34589.t1 | AT2G17850 | 47.826 | 92 | 45 | 2 | 3 | 92 | 25 | 115 | 2.17e-22 | 86.3 |
| MS.gene34589.t1 | AT4G35770 | 42.683 | 82 | 47 | 0 | 22 | 103 | 81 | 162 | 4.92e-18 | 76.3 |
| MS.gene34589.t1 | AT4G35770 | 45.333 | 75 | 41 | 0 | 22 | 96 | 81 | 155 | 5.63e-18 | 75.5 |
| MS.gene34589.t1 | AT4G35770 | 46.667 | 60 | 32 | 0 | 22 | 81 | 81 | 140 | 2.14e-14 | 66.2 |
| MS.gene34589.t1 | AT5G66040 | 45.763 | 59 | 32 | 0 | 61 | 119 | 3 | 61 | 1.38e-13 | 61.6 |
Find 32 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTACTTGGTTAACAAAATC+TGG | 0.229853 | 4.3:-59067252 | None:intergenic |
| GTCATAGACTTACTGAATTA+TGG | 0.234240 | 4.3:-59067467 | None:intergenic |
| TTCTTCTGTGCTGAACAAAT+AGG | 0.299247 | 4.3:-59066952 | None:intergenic |
| TCTTCTGTGCTGAACAAATA+GGG | 0.319017 | 4.3:-59066951 | None:intergenic |
| TTGAAACTCTTACTCCTTTG+TGG | 0.372195 | 4.3:-59066619 | None:intergenic |
| CAAATTCAGGCTTGTAATGC+TGG | 0.378391 | 4.3:+59067414 | MS.gene34589:intron |
| TGGGTGGATGCTGGATTTGC+AGG | 0.391447 | 4.3:+59068825 | MS.gene34589:CDS |
| AGATGAATCTAGCAGATCTT+TGG | 0.407928 | 4.3:-59066758 | None:intergenic |
| GGGAGGCTACTCTGCGTGGG+TGG | 0.422325 | 4.3:+59068809 | MS.gene34589:CDS |
| TTTGGTAGCATGGACATCTA+AGG | 0.431769 | 4.3:-59066740 | None:intergenic |
| TCTTATATATTGCTTCTACT+TGG | 0.436133 | 4.3:-59067266 | None:intergenic |
| GAGGAAGATCAAGTCGAGCC+TGG | 0.438094 | 4.3:+59067436 | MS.gene34589:CDS |
| TACTCTGCGTGGGTGGATGC+TGG | 0.443842 | 4.3:+59068816 | MS.gene34589:CDS |
| AAAGATCTGCTAGATTCATC+TGG | 0.488656 | 4.3:+59066760 | MS.gene34589:CDS |
| TATTTGTTCAGCACAGAAGA+AGG | 0.505003 | 4.3:+59066954 | MS.gene34589:CDS |
| CGTTAATAGCATTCTCAACA+TGG | 0.507094 | 4.3:-59066926 | None:intergenic |
| ATTTAAACATATTGTTAACA+TGG | 0.515720 | 4.3:+59068785 | MS.gene34589:CDS |
| CTAGCAGATCTTTGGTAGCA+TGG | 0.528750 | 4.3:-59066750 | None:intergenic |
| TTTAAACATATTGTTAACAT+GGG | 0.557076 | 4.3:+59068786 | MS.gene34589:CDS |
| AGGAAGATCAAGTCGAGCCT+GGG | 0.580327 | 4.3:+59067437 | MS.gene34589:CDS |
| TGAATTATGGAGATCAACCC+AGG | 0.586135 | 4.3:-59067454 | None:intergenic |
| AAACATATTGTTAACATGGG+GGG | 0.595696 | 4.3:+59068789 | MS.gene34589:CDS |
| AGAAGCAATATATAAGAGTG+AGG | 0.598950 | 4.3:+59067272 | MS.gene34589:CDS |
| CTTCTGTGCTGAACAAATAG+GGG | 0.608024 | 4.3:-59066950 | None:intergenic |
| GTTACAATTATCTTGATGTG+AGG | 0.616591 | 4.3:+59066782 | MS.gene34589:CDS |
| GAGTGAGGATCACTTAATTG+TGG | 0.617072 | 4.3:+59067287 | MS.gene34589:CDS |
| TTAAACATATTGTTAACATG+GGG | 0.636631 | 4.3:+59068787 | MS.gene34589:CDS |
| TAAACATATTGTTAACATGG+GGG | 0.658767 | 4.3:+59068788 | MS.gene34589:CDS |
| AAATATAATGGACACCACAA+AGG | 0.664806 | 4.3:+59066605 | None:intergenic |
| ATTCAGGCTTGTAATGCTGG+AGG | 0.667532 | 4.3:+59067417 | MS.gene34589:intron |
| CCACTGAAATAGGACTGTGG+AGG | 0.675906 | 4.3:+59066890 | MS.gene34589:intron |
| TTTCCACTGAAATAGGACTG+TGG | 0.676448 | 4.3:+59066887 | MS.gene34589:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAATTAATTATTACTAA+TGG | - | chr4.3:59068221-59068240 | None:intergenic | 10.0% |
| !! | AGTAATTAATTATTACTAAT+GGG | - | chr4.3:59068220-59068239 | None:intergenic | 10.0% |
| !! | CAAAAATAAATAAAAATAGT+AGG | + | chr4.3:59068176-59068195 | MS.gene34589:intron | 10.0% |
| !!! | ATTGTTTTTTTATATTAAAG+AGG | + | chr4.3:59068653-59068672 | MS.gene34589:intron | 10.0% |
| !!! | TGATTTTTTAATTTTGTTTT+TGG | - | chr4.3:59067736-59067755 | None:intergenic | 10.0% |
| !!! | TTGTATCTTTTTTTTTTTTT+TGG | - | chr4.3:59068159-59068178 | None:intergenic | 10.0% |
| !!! | TTTATTTTTTTGTAGTAAAA+AGG | + | chr4.3:59067872-59067891 | MS.gene34589:intron | 10.0% |
| !!! | TTTTTTTTTCAAATGATTAA+GGG | - | chr4.3:59067995-59068014 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTCAAATGATTA+AGG | - | chr4.3:59067996-59068015 | None:intergenic | 10.0% |
| !! | AAAATTAAAAATGAAGAAAC+TGG | - | chr4.3:59066823-59066842 | None:intergenic | 15.0% |
| !! | AAATTAAAAATGAAGAAACT+GGG | - | chr4.3:59066822-59066841 | None:intergenic | 15.0% |
| !! | ATTTAAACATATTGTTAACA+TGG | + | chr4.3:59068785-59068804 | MS.gene34589:CDS | 15.0% |
| !! | TATTAATTTACCAAAAAATC+AGG | + | chr4.3:59067530-59067549 | MS.gene34589:intron | 15.0% |
| !! | TTAGAAAAAATTGAAACTAA+CGG | - | chr4.3:59067586-59067605 | None:intergenic | 15.0% |
| !! | TTTAAACATATTGTTAACAT+GGG | + | chr4.3:59068786-59068805 | MS.gene34589:CDS | 15.0% |
| !!! | AAATAATTTTGAATGCTTAA+TGG | - | chr4.3:59068724-59068743 | None:intergenic | 15.0% |
| !!! | ATTCATTTATTTTAAGCAAA+TGG | - | chr4.3:59068067-59068086 | None:intergenic | 15.0% |
| !!! | TATTTTTTTTAAATACAAGC+AGG | + | chr4.3:59067824-59067843 | MS.gene34589:intron | 15.0% |
| !!! | TTTTTTAATTTTGTTTTTGG+TGG | - | chr4.3:59067733-59067752 | None:intergenic | 15.0% |
| !! | AAAAAGAAAGATAAAGACTT+TGG | - | chr4.3:59066869-59066888 | None:intergenic | 20.0% |
| !! | ATCCATAACATAATATAGAA+TGG | - | chr4.3:59066657-59066676 | None:intergenic | 20.0% |
| !! | TAAAACAATATGCATAAATC+AGG | + | chr4.3:59067346-59067365 | MS.gene34589:intron | 20.0% |
| !! | TAACATAATATAGAATGGAA+TGG | - | chr4.3:59066652-59066671 | None:intergenic | 20.0% |
| !! | TAATCAAAATTGAGAATTTG+AGG | - | chr4.3:59067496-59067515 | None:intergenic | 20.0% |
| !! | TAGAAAAAATTGAAACTAAC+GGG | - | chr4.3:59067585-59067604 | None:intergenic | 20.0% |
| !! | TATCACCAATTAGATATTTA+TGG | - | chr4.3:59067162-59067181 | None:intergenic | 20.0% |
| !! | TATTGTTATGTTTATTGCTA+AGG | + | chr4.3:59068030-59068049 | MS.gene34589:intron | 20.0% |
| !! | TGTATCCATAAATATCTAAT+TGG | + | chr4.3:59067154-59067173 | MS.gene34589:intron | 20.0% |
| !! | TTAAACATATTGTTAACATG+GGG | + | chr4.3:59068787-59068806 | MS.gene34589:CDS | 20.0% |
| !! | TTCCATTCTATATTATGTTA+TGG | + | chr4.3:59066652-59066671 | MS.gene34589:intron | 20.0% |
| !!! | ATTCAATTTTTTACTCCTTA+TGG | + | chr4.3:59067009-59067028 | MS.gene34589:intron | 20.0% |
| !!! | GATTCTAAAAAAAAATTCTG+AGG | - | chr4.3:59067907-59067926 | None:intergenic | 20.0% |
| !!! | TAATTGAAATCCTGATTTTT+TGG | - | chr4.3:59067543-59067562 | None:intergenic | 20.0% |
| !!! | TTATAATGGATTACAAATTC+AGG | + | chr4.3:59067401-59067420 | MS.gene34589:intron | 20.0% |
| !!! | TTCAATTTTTTACTCCTTAT+GGG | + | chr4.3:59067010-59067029 | MS.gene34589:intron | 20.0% |
| ! | ACACTGATGTATGATTATAA+TGG | + | chr4.3:59067387-59067406 | MS.gene34589:intron | 25.0% |
| ! | AGAAAAAATTGAAACTAACG+GGG | - | chr4.3:59067584-59067603 | None:intergenic | 25.0% |
| ! | AGTTATTGACAAATGATTAG+TGG | - | chr4.3:59068617-59068636 | None:intergenic | 25.0% |
| ! | CAAAATGAATTTCTCTATTG+TGG | - | chr4.3:59068481-59068500 | None:intergenic | 25.0% |
| ! | GTTATTGACAAATGATTAGT+GGG | - | chr4.3:59068616-59068635 | None:intergenic | 25.0% |
| ! | TAAACATATTGTTAACATGG+GGG | + | chr4.3:59068788-59068807 | MS.gene34589:CDS | 25.0% |
| ! | TATTTATTACTAATGGGACT+CGG | - | chr4.3:59068275-59068294 | None:intergenic | 25.0% |
| ! | TCATCTTCAATTCTTTCATT+TGG | - | chr4.3:59068343-59068362 | None:intergenic | 25.0% |
| ! | TCTTATATATTGCTTCTACT+TGG | - | chr4.3:59067269-59067288 | None:intergenic | 25.0% |
| !! | AATTCATTTTGTGTACGTAA+TGG | + | chr4.3:59068490-59068509 | MS.gene34589:intron | 25.0% |
| !! | AATTTTGAATGCTTAATGGA+TGG | - | chr4.3:59068720-59068739 | None:intergenic | 25.0% |
| !! | ATTCATTTTGTGTACGTAAT+GGG | + | chr4.3:59068491-59068510 | MS.gene34589:intron | 25.0% |
| !!! | TTTAATTTTGTTTTTGGTGG+TGG | - | chr4.3:59067730-59067749 | None:intergenic | 25.0% |
| !!! | TTTCTTTTTTCCACTGAAAT+AGG | + | chr4.3:59066880-59066899 | MS.gene34589:intron | 25.0% |
| AAACATATTGTTAACATGGG+GGG | + | chr4.3:59068789-59068808 | MS.gene34589:CDS | 30.0% | |
| AAGAAATTTAGGCATGCTAA+AGG | - | chr4.3:59068585-59068604 | None:intergenic | 30.0% | |
| AGAAATTTAGGCATGCTAAA+GGG | - | chr4.3:59068584-59068603 | None:intergenic | 30.0% | |
| AGAAGCAATATATAAGAGTG+AGG | + | chr4.3:59067272-59067291 | MS.gene34589:CDS | 30.0% | |
| GACAATGCATAATATATGCA+AGG | + | chr4.3:59067685-59067704 | MS.gene34589:intron | 30.0% | |
| GTCATAGACTTACTGAATTA+TGG | - | chr4.3:59067470-59067489 | None:intergenic | 30.0% | |
| GTTACAATTATCTTGATGTG+AGG | + | chr4.3:59066782-59066801 | MS.gene34589:CDS | 30.0% | |
| TCTACTTGGTTAACAAAATC+TGG | - | chr4.3:59067255-59067274 | None:intergenic | 30.0% | |
| TGATGTGAGGTAATTAACAA+AGG | + | chr4.3:59066795-59066814 | MS.gene34589:intron | 30.0% | |
| TGCATAATATATGCAAGGTT+CGG | + | chr4.3:59067690-59067709 | MS.gene34589:intron | 30.0% | |
| TTGTGTATGTTGAAGTTACA+TGG | - | chr4.3:59068413-59068432 | None:intergenic | 30.0% | |
| ! | CAAAATTGAGAATTTGAGGT+TGG | - | chr4.3:59067492-59067511 | None:intergenic | 30.0% |
| ! | TCTATTGTGGATGCTTTTAA+TGG | - | chr4.3:59068468-59068487 | None:intergenic | 30.0% |
| AAAGATCTGCTAGATTCATC+TGG | + | chr4.3:59066760-59066779 | MS.gene34589:CDS | 35.0% | |
| AATGGGACTCACTTAATGAT+AGG | - | chr4.3:59068203-59068222 | None:intergenic | 35.0% | |
| AGATGAATCTAGCAGATCTT+TGG | - | chr4.3:59066761-59066780 | None:intergenic | 35.0% | |
| CGTTAATAGCATTCTCAACA+TGG | - | chr4.3:59066929-59066948 | None:intergenic | 35.0% | |
| CTTACAAATGATCAACAGGA+CGG | + | chr4.3:59067220-59067239 | MS.gene34589:intron | 35.0% | |
| GATGTTGTAATTAACGAGCA+GGG | + | chr4.3:59068762-59068781 | MS.gene34589:intron | 35.0% | |
| TATTTGTTCAGCACAGAAGA+AGG | + | chr4.3:59066954-59066973 | MS.gene34589:CDS | 35.0% | |
| TCTTCTGTGCTGAACAAATA+GGG | - | chr4.3:59066954-59066973 | None:intergenic | 35.0% | |
| TGATGTTGTAATTAACGAGC+AGG | + | chr4.3:59068761-59068780 | MS.gene34589:intron | 35.0% | |
| TTACAAATGATCAACAGGAC+GGG | + | chr4.3:59067221-59067240 | MS.gene34589:intron | 35.0% | |
| TTCTTCTGTGCTGAACAAAT+AGG | - | chr4.3:59066955-59066974 | None:intergenic | 35.0% | |
| TTGAAACTCTTACTCCTTTG+TGG | - | chr4.3:59066622-59066641 | None:intergenic | 35.0% | |
| ! | TTGAATGCTTAATGGATGGA+GGG | - | chr4.3:59068716-59068735 | None:intergenic | 35.0% |
| ! | TTTGAATGCTTAATGGATGG+AGG | - | chr4.3:59068717-59068736 | None:intergenic | 35.0% |
| CAAATTCAGGCTTGTAATGC+TGG | + | chr4.3:59067414-59067433 | MS.gene34589:intron | 40.0% | |
| CAGCACAGAAGAAGGTAATA+TGG | + | chr4.3:59066962-59066981 | MS.gene34589:intron | 40.0% | |
| CGTGCTTACAAATGATCAAC+AGG | + | chr4.3:59067216-59067235 | MS.gene34589:intron | 40.0% | |
| CTTCTGTGCTGAACAAATAG+GGG | - | chr4.3:59066953-59066972 | None:intergenic | 40.0% | |
| GAGTGAGGATCACTTAATTG+TGG | + | chr4.3:59067287-59067306 | MS.gene34589:CDS | 40.0% | |
| GGGTCTCGGTTAAGAAATTT+AGG | - | chr4.3:59068596-59068615 | None:intergenic | 40.0% | |
| TAGCTAGCGATAAACGAGTT+AGG | - | chr4.3:59068378-59068397 | None:intergenic | 40.0% | |
| TATCAACTGAGCTAAGCTCA+CGG | - | chr4.3:59067663-59067682 | None:intergenic | 40.0% | |
| TGAATTATGGAGATCAACCC+AGG | - | chr4.3:59067457-59067476 | None:intergenic | 40.0% | |
| TTTCCACTGAAATAGGACTG+TGG | + | chr4.3:59066887-59066906 | MS.gene34589:intron | 40.0% | |
| ! | GACAAATGATTAGTGGGTCT+CGG | - | chr4.3:59068610-59068629 | None:intergenic | 40.0% |
| ! | TTAAAGAGGCATAAGACGCA+CGG | + | chr4.3:59068667-59068686 | MS.gene34589:intron | 40.0% |
| ! | TTTGGTAGCATGGACATCTA+AGG | - | chr4.3:59066743-59066762 | None:intergenic | 40.0% |
| ! | TTTTTACTCCTTATGGGCAG+AGG | + | chr4.3:59067016-59067035 | MS.gene34589:intron | 40.0% |
| !!! | ATTTTGTTTTTGGTGGTGGC+CGG | - | chr4.3:59067726-59067745 | None:intergenic | 40.0% |
| !!! | CTTGTTTTAAGCTCTTCTGC+AGG | - | chr4.3:59068861-59068880 | None:intergenic | 40.0% |
| ATCAACTGAGCTAAGCTCAC+GGG | - | chr4.3:59067662-59067681 | None:intergenic | 45.0% | |
| ATTCAGGCTTGTAATGCTGG+AGG | + | chr4.3:59067417-59067436 | MS.gene34589:intron | 45.0% | |
| CATATTGTTAACATGGGGGG+AGG | + | chr4.3:59068792-59068811 | MS.gene34589:CDS | 45.0% | |
| CTCGTTTATCGCTAGCTAAG+TGG | + | chr4.3:59068380-59068399 | MS.gene34589:intron | 45.0% | |
| ! | CTAGCAGATCTTTGGTAGCA+TGG | - | chr4.3:59066753-59066772 | None:intergenic | 45.0% |
| !! | GTGTACGTAATGGGTCTCAT+GGG | + | chr4.3:59068500-59068519 | MS.gene34589:intron | 45.0% |
| !! | TGTGTACGTAATGGGTCTCA+TGG | + | chr4.3:59068499-59068518 | MS.gene34589:intron | 45.0% |
| !!! | TTTTGTTTTTGGTGGTGGCC+GGG | - | chr4.3:59067725-59067744 | None:intergenic | 45.0% |
| !! | AATAAAAAAAAAAAACTATT+AGG | + | chr4.3:59067786-59067805 | MS.gene34589:intron | 5.0% |
| !! | AATTAATTATTTATTACTAA+TGG | - | chr4.3:59068282-59068301 | None:intergenic | 5.0% |
| !! | AATTATCTTAATTTAAATTT+AGG | + | chr4.3:59067558-59067577 | MS.gene34589:intron | 5.0% |
| !! | ATTAATTATTTATTACTAAT+GGG | - | chr4.3:59068281-59068300 | None:intergenic | 5.0% |
| !!! | ATTTAAAAAAAATAGATTTT+GGG | - | chr4.3:59067818-59067837 | None:intergenic | 5.0% |
| !!! | TATTTAAAAAAAATAGATTT+TGG | - | chr4.3:59067819-59067838 | None:intergenic | 5.0% |
| AAGGTTCGGAGTTCGAATCC+CGG | + | chr4.3:59067704-59067723 | MS.gene34589:intron | 50.0% | |
| AGGAAGATCAAGTCGAGCCT+GGG | + | chr4.3:59067437-59067456 | MS.gene34589:CDS | 50.0% | |
| CCACTGAAATAGGACTGTGG+AGG | + | chr4.3:59066890-59066909 | MS.gene34589:intron | 50.0% | |
| CCTCCACAGTCCTATTTCAG+TGG | - | chr4.3:59066893-59066912 | None:intergenic | 50.0% | |
| TCAACTGAGCTAAGCTCACG+GGG | - | chr4.3:59067661-59067680 | None:intergenic | 50.0% | |
| GAGGAAGATCAAGTCGAGCC+TGG | + | chr4.3:59067436-59067455 | MS.gene34589:CDS | 55.0% | |
| TGGGTGGATGCTGGATTTGC+AGG | + | chr4.3:59068825-59068844 | MS.gene34589:CDS | 55.0% | |
| TGTAGCTGCCTCTGCCCATA+AGG | - | chr4.3:59067027-59067046 | None:intergenic | 55.0% | |
| TACTCTGCGTGGGTGGATGC+TGG | + | chr4.3:59068816-59068835 | MS.gene34589:CDS | 60.0% | |
| GGGAGGCTACTCTGCGTGGG+TGG | + | chr4.3:59068809-59068828 | MS.gene34589:CDS | 70.0% | |
| GGGGGGAGGCTACTCTGCGT+GGG | + | chr4.3:59068806-59068825 | MS.gene34589:CDS | 70.0% | |
| TGGGGGGAGGCTACTCTGCG+TGG | + | chr4.3:59068805-59068824 | MS.gene34589:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 59066612 | 59068899 | 59066612 | ID=MS.gene34589 |
| chr4.3 | mRNA | 59066612 | 59068899 | 59066612 | ID=MS.gene34589.t1;Parent=MS.gene34589 |
| chr4.3 | exon | 59066612 | 59066628 | 59066612 | ID=MS.gene34589.t1.exon1;Parent=MS.gene34589.t1 |
| chr4.3 | CDS | 59066612 | 59066628 | 59066612 | ID=cds.MS.gene34589.t1;Parent=MS.gene34589.t1 |
| chr4.3 | exon | 59066723 | 59066803 | 59066723 | ID=MS.gene34589.t1.exon2;Parent=MS.gene34589.t1 |
| chr4.3 | CDS | 59066723 | 59066803 | 59066723 | ID=cds.MS.gene34589.t1;Parent=MS.gene34589.t1 |
| chr4.3 | exon | 59066902 | 59066975 | 59066902 | ID=MS.gene34589.t1.exon3;Parent=MS.gene34589.t1 |
| chr4.3 | CDS | 59066902 | 59066975 | 59066902 | ID=cds.MS.gene34589.t1;Parent=MS.gene34589.t1 |
| chr4.3 | exon | 59067238 | 59067308 | 59067238 | ID=MS.gene34589.t1.exon4;Parent=MS.gene34589.t1 |
| chr4.3 | CDS | 59067238 | 59067308 | 59067238 | ID=cds.MS.gene34589.t1;Parent=MS.gene34589.t1 |
| chr4.3 | exon | 59067423 | 59067476 | 59067423 | ID=MS.gene34589.t1.exon5;Parent=MS.gene34589.t1 |
| chr4.3 | CDS | 59067423 | 59067476 | 59067423 | ID=cds.MS.gene34589.t1;Parent=MS.gene34589.t1 |
| chr4.3 | exon | 59068783 | 59068899 | 59068783 | ID=MS.gene34589.t1.exon6;Parent=MS.gene34589.t1 |
| chr4.3 | CDS | 59068783 | 59068899 | 59068783 | ID=cds.MS.gene34589.t1;Parent=MS.gene34589.t1 |
| Gene Sequence |
| Protein sequence |
