Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39317.t1 | ACJ85918.1 | 100 | 159 | 0 | 0 | 1 | 159 | 1 | 159 | 7.60E-92 | 346.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39317.t1 | Q9M9M9 | 78.2 | 156 | 34 | 0 | 1 | 156 | 1 | 156 | 4.7e-74 | 278.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39317.t1 | B7FMD5 | 100.0 | 159 | 0 | 0 | 1 | 159 | 1 | 159 | 5.5e-92 | 346.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene39317 | 0.806792 | 6.92E-50 | -1.69E-46 |
| MS.gene04917 | MS.gene39317 | 0.809939 | 1.48E-50 | -1.69E-46 |
| MS.gene049382 | MS.gene39317 | 0.80268 | 5.00E-49 | -1.69E-46 |
| MS.gene049703 | MS.gene39317 | -0.804875 | 1.75E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene39317 | 0.842129 | 3.12E-58 | -1.69E-46 |
| MS.gene050288 | MS.gene39317 | 0.813253 | 2.81E-51 | -1.69E-46 |
| MS.gene050317 | MS.gene39317 | 0.807022 | 6.19E-50 | -1.69E-46 |
| MS.gene050320 | MS.gene39317 | 0.806102 | 9.68E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene39317 | 0.827166 | 1.82E-54 | -1.69E-46 |
| MS.gene051063 | MS.gene39317 | 0.830461 | 2.90E-55 | -1.69E-46 |
| MS.gene051243 | MS.gene39317 | 0.801248 | 9.85E-49 | -1.69E-46 |
| MS.gene051245 | MS.gene39317 | 0.870981 | 9.68E-67 | -1.69E-46 |
| MS.gene051748 | MS.gene39317 | 0.805903 | 1.07E-49 | -1.69E-46 |
| MS.gene051756 | MS.gene39317 | 0.85137 | 9.28E-61 | -1.69E-46 |
| MS.gene051757 | MS.gene39317 | 0.843399 | 1.44E-58 | -1.69E-46 |
| MS.gene051903 | MS.gene39317 | 0.84009 | 1.07E-57 | -1.69E-46 |
| MS.gene052202 | MS.gene39317 | 0.810462 | 1.14E-50 | -1.69E-46 |
| MS.gene052286 | MS.gene39317 | 0.817769 | 2.78E-52 | -1.69E-46 |
| MS.gene052302 | MS.gene39317 | 0.804844 | 1.78E-49 | -1.69E-46 |
| MS.gene052856 | MS.gene39317 | 0.801319 | 9.52E-49 | -1.69E-46 |
| MS.gene053109 | MS.gene39317 | 0.82192 | 3.12E-53 | -1.69E-46 |
| MS.gene053381 | MS.gene39317 | 0.819798 | 9.61E-53 | -1.69E-46 |
| MS.gene054536 | MS.gene39317 | 0.817078 | 3.97E-52 | -1.69E-46 |
| MS.gene055424 | MS.gene39317 | 0.812948 | 3.28E-51 | -1.69E-46 |
| MS.gene055441 | MS.gene39317 | 0.810098 | 1.36E-50 | -1.69E-46 |
| MS.gene056432 | MS.gene39317 | 0.806091 | 9.73E-50 | -1.69E-46 |
| MS.gene056580 | MS.gene39317 | 0.825759 | 3.94E-54 | -1.69E-46 |
| MS.gene056631 | MS.gene39317 | 0.829702 | 4.44E-55 | -1.69E-46 |
| MS.gene056752 | MS.gene39317 | 0.802626 | 5.13E-49 | -1.69E-46 |
| MS.gene056760 | MS.gene39317 | 0.858414 | 8.37E-63 | -1.69E-46 |
| MS.gene056787 | MS.gene39317 | 0.807651 | 4.56E-50 | -1.69E-46 |
| MS.gene057057 | MS.gene39317 | 0.847438 | 1.16E-59 | -1.69E-46 |
| MS.gene057094 | MS.gene39317 | 0.827458 | 1.55E-54 | -1.69E-46 |
| MS.gene057140 | MS.gene39317 | 0.842917 | 1.93E-58 | -1.69E-46 |
| MS.gene057234 | MS.gene39317 | 0.875318 | 3.39E-68 | -1.69E-46 |
| MS.gene057452 | MS.gene39317 | -0.833087 | 6.52E-56 | -1.69E-46 |
| MS.gene057999 | MS.gene39317 | 0.812842 | 3.46E-51 | -1.69E-46 |
| MS.gene058054 | MS.gene39317 | 0.813083 | 3.06E-51 | -1.69E-46 |
| MS.gene058055 | MS.gene39317 | 0.854167 | 1.47E-61 | -1.69E-46 |
| MS.gene058182 | MS.gene39317 | 0.874365 | 7.15E-68 | -1.69E-46 |
| MS.gene058238 | MS.gene39317 | 0.848416 | 6.22E-60 | -1.69E-46 |
| MS.gene058646 | MS.gene39317 | 0.819372 | 1.20E-52 | -1.69E-46 |
| MS.gene058654 | MS.gene39317 | 0.834881 | 2.32E-56 | -1.69E-46 |
| MS.gene058906 | MS.gene39317 | 0.887492 | 1.36E-72 | -1.69E-46 |
| MS.gene059898 | MS.gene39317 | 0.832845 | 7.49E-56 | -1.69E-46 |
| MS.gene06001 | MS.gene39317 | 0.832626 | 8.49E-56 | -1.69E-46 |
| MS.gene060084 | MS.gene39317 | 0.833117 | 6.41E-56 | -1.69E-46 |
| MS.gene060297 | MS.gene39317 | 0.811303 | 7.49E-51 | -1.69E-46 |
| MS.gene060463 | MS.gene39317 | 0.804759 | 1.85E-49 | -1.69E-46 |
| MS.gene060465 | MS.gene39317 | 0.808581 | 2.89E-50 | -1.69E-46 |
| MS.gene061145 | MS.gene39317 | 0.813649 | 2.30E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39317.t1 | MTR_8g009960 | 99.371 | 159 | 1 | 0 | 1 | 159 | 1 | 159 | 6.77e-118 | 330 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39317.t1 | AT3G03100 | 78.205 | 156 | 34 | 0 | 1 | 156 | 1 | 156 | 1.83e-93 | 268 |
| MS.gene39317.t1 | AT3G03100 | 77.564 | 156 | 35 | 0 | 1 | 156 | 1 | 156 | 1.36e-92 | 266 |
Find 46 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATCCAGGGCAGAGAAAC+TGG | 0.299097 | 8.2:+81161516 | MS.gene39317:CDS |
| CAAACCAAGATCCACAATAT+TGG | 0.303383 | 8.2:+81159872 | MS.gene39317:CDS |
| AAACCAAGATCCACAATATT+GGG | 0.303795 | 8.2:+81159873 | MS.gene39317:CDS |
| TGCCCCAATATTGTGGATCT+TGG | 0.327061 | 8.2:-81159876 | None:intergenic |
| CTGGTCCAGTTTCTCTGCCC+TGG | 0.348930 | 8.2:-81161521 | None:intergenic |
| TTCCTGCTGAATGGCATGGC+TGG | 0.388219 | 8.2:+81161268 | MS.gene39317:CDS |
| AAAACTGAAAACACACAGTA+TGG | 0.410930 | 8.2:+81159941 | MS.gene39317:CDS |
| CCATATTCACGGTTCGTTTG+TGG | 0.419524 | 8.2:-81161561 | None:intergenic |
| AAGGGACATGCTCTCAATCC+AGG | 0.420399 | 8.2:+81161503 | MS.gene39317:CDS |
| GTCTAGATATAATGCTTCTC+AGG | 0.450196 | 8.2:+81161245 | MS.gene39317:CDS |
| ACAGGTATCCTTCATCTTTG+AGG | 0.457690 | 8.2:-81158495 | None:intergenic |
| CTTCTCAGGTTCCTGCTGAA+TGG | 0.475351 | 8.2:+81161259 | MS.gene39317:CDS |
| AATATTGGGGCAACGCTTGT+TGG | 0.475730 | 8.2:+81159887 | MS.gene39317:CDS |
| GATCATAAAGAAAATCTGTC+TGG | 0.476518 | 8.2:+81161452 | MS.gene39317:CDS |
| CTTGTTGGTGTTGACAAATA+CGG | 0.476795 | 8.2:+81159902 | MS.gene39317:CDS |
| TTAAACACGGTGAAGGAGAA+AGG | 0.511115 | 8.2:+81158451 | MS.gene39317:CDS |
| GGACTGCCATGGTTGGTACC+TGG | 0.513101 | 8.2:-81161540 | None:intergenic |
| CAGGTTCCTGCTGAATGGCA+TGG | 0.525614 | 8.2:+81161264 | MS.gene39317:CDS |
| ACTTACAATAGGTTTCCATC+AGG | 0.525711 | 8.2:-81158859 | None:intergenic |
| TGGATTGAGAGCATGTCCCT+TGG | 0.535784 | 8.2:-81161501 | None:intergenic |
| TTCAGGAGATGCCTTCCTGA+TGG | 0.536385 | 8.2:+81158844 | MS.gene39317:intron |
| TTCAGACACCTCAAAGATGA+AGG | 0.536736 | 8.2:+81158487 | MS.gene39317:CDS |
| AGCCAGCCATGCCATTCAGC+AGG | 0.538183 | 8.2:-81161270 | None:intergenic |
| ATCGATCATGGCGTCGTCGG+TGG | 0.542913 | 8.2:+81158417 | None:intergenic |
| CAAGCGTTGCCCCAATATTG+TGG | 0.553229 | 8.2:-81159883 | None:intergenic |
| AGAGTTTATCTATCATTCCA+AGG | 0.554573 | 8.2:+81161484 | MS.gene39317:CDS |
| GGTTCGTTTGTGGACTGCCA+TGG | 0.557488 | 8.2:-81161551 | None:intergenic |
| CGTTTGTGGACTGCCATGGT+TGG | 0.558192 | 8.2:-81161547 | None:intergenic |
| CAGGGCAGAGAAACTGGACC+AGG | 0.579650 | 8.2:+81161522 | MS.gene39317:CDS |
| ACAATAGGTTTCCATCAGGA+AGG | 0.596452 | 8.2:-81158855 | None:intergenic |
| ACGGTGAAGGAGAAAGGTCT+CGG | 0.597284 | 8.2:+81158457 | MS.gene39317:CDS |
| AAAATTTGGCAGGAAGACAC+AGG | 0.598790 | 8.2:+81161202 | MS.gene39317:intron |
| GAGTTTATCTATCATTCCAA+GGG | 0.600374 | 8.2:+81161485 | MS.gene39317:CDS |
| AGGGACATGCTCTCAATCCA+GGG | 0.603322 | 8.2:+81161504 | MS.gene39317:CDS |
| AAAGAAAATCTGTCTGGACA+TGG | 0.605520 | 8.2:+81161458 | MS.gene39317:CDS |
| TCGATCGATCATGGCGTCGT+CGG | 0.614170 | 8.2:+81158414 | None:intergenic |
| GAGCATCTTAAACACGGTGA+AGG | 0.622926 | 8.2:+81158444 | MS.gene39317:CDS |
| AAGCGAATTTACCTCATCGC+CGG | 0.625501 | 8.2:-81161313 | None:intergenic |
| AACTGATCACACCGGCGATG+AGG | 0.628022 | 8.2:+81161302 | MS.gene39317:CDS |
| AACCAAGATCCACAATATTG+GGG | 0.636179 | 8.2:+81159874 | MS.gene39317:CDS |
| TTTGGCAGGAAGACACAGGT+GGG | 0.636329 | 8.2:+81161206 | MS.gene39317:intron |
| ATTTGGCAGGAAGACACAGG+TGG | 0.636657 | 8.2:+81161205 | MS.gene39317:intron |
| ACTGGACCAGGTACCAACCA+TGG | 0.665621 | 8.2:+81161534 | MS.gene39317:CDS |
| CACTTCATAACTGATCACAC+CGG | 0.696701 | 8.2:+81161294 | MS.gene39317:CDS |
| GGTGAAGAGCATCTTAAACA+CGG | 0.715006 | 8.2:+81158438 | MS.gene39317:CDS |
| GTGAAGGAGAAAGGTCTCGG+CGG | 0.764077 | 8.2:+81158460 | MS.gene39317:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAATGAAATAAGAA+TGG | + | chr8.2:81160654-81160673 | MS.gene39317:intron | 10.0% |
| !! | AAATAAAATGAAATAAGAAT+GGG | + | chr8.2:81160655-81160674 | MS.gene39317:intron | 10.0% |
| !!! | TATGTTTAAAATAATGAATA+TGG | + | chr8.2:81159290-81159309 | MS.gene39317:intron | 10.0% |
| !! | AACAAAAAATGAAATCAAAT+TGG | - | chr8.2:81158713-81158732 | None:intergenic | 15.0% |
| !! | ATAACTAACTAACTAATTAA+AGG | - | chr8.2:81160166-81160185 | None:intergenic | 15.0% |
| !! | GAAAATAGATTATATCTTAT+GGG | - | chr8.2:81159564-81159583 | None:intergenic | 15.0% |
| !! | TAACTAACTAACTAATTAAA+GGG | - | chr8.2:81160165-81160184 | None:intergenic | 15.0% |
| !! | TAAGAAGAATATAATAATAG+TGG | - | chr8.2:81158649-81158668 | None:intergenic | 15.0% |
| !! | TGAAAATAGATTATATCTTA+TGG | - | chr8.2:81159565-81159584 | None:intergenic | 15.0% |
| !! | TTAAAATAATGAATATGGAT+AGG | + | chr8.2:81159295-81159314 | MS.gene39317:intron | 15.0% |
| !!! | GCTTTATATTTTTTTACATA+TGG | - | chr8.2:81161366-81161385 | None:intergenic | 15.0% |
| !! | ATATCACAATATTTACAATC+AGG | + | chr8.2:81160809-81160828 | MS.gene39317:intron | 20.0% |
| !! | CAAAAAAAATGACTTACAAT+AGG | - | chr8.2:81158873-81158892 | None:intergenic | 20.0% |
| !! | GACACATTATTGTTAAAATT+TGG | + | chr8.2:81161188-81161207 | MS.gene39317:intron | 20.0% |
| !! | TAAATGTCTAATGCAATTAT+TGG | + | chr8.2:81160754-81160773 | MS.gene39317:intron | 20.0% |
| !! | TAATGATTGAAAAAGAGAAA+TGG | - | chr8.2:81158539-81158558 | None:intergenic | 20.0% |
| !! | TATTACTTAGGAAAAGAATT+AGG | - | chr8.2:81161343-81161362 | None:intergenic | 20.0% |
| !! | TGACAATATATGATAGAATA+TGG | - | chr8.2:81161116-81161135 | None:intergenic | 20.0% |
| !!! | ATTATTAGTTTTTATGCTGA+GGG | - | chr8.2:81160614-81160633 | None:intergenic | 20.0% |
| !!! | TGTTGTTTTTGGATTTAAAT+CGG | + | chr8.2:81159028-81159047 | MS.gene39317:intron | 20.0% |
| !!! | TTCTTTTATTGAAACCAAAA+AGG | + | chr8.2:81161420-81161439 | MS.gene39317:CDS | 20.0% |
| !!! | TTTTACATATGGTATTACTT+AGG | - | chr8.2:81161355-81161374 | None:intergenic | 20.0% |
| ! | AAAAACTTATAAGGATGACA+TGG | + | chr8.2:81160529-81160548 | MS.gene39317:intron | 25.0% |
| ! | AAAACTAATAATGCTAGCAT+TGG | + | chr8.2:81160622-81160641 | MS.gene39317:intron | 25.0% |
| ! | AATGAAATAAGAATGGGATA+TGG | + | chr8.2:81160661-81160680 | MS.gene39317:intron | 25.0% |
| ! | ACTTTACAGAAACAAATCTA+AGG | - | chr8.2:81159723-81159742 | None:intergenic | 25.0% |
| ! | ATCTCATATGAGTTTCTATA+TGG | + | chr8.2:81160710-81160729 | MS.gene39317:intron | 25.0% |
| ! | ATTCATTGCAAGTATTATGT+TGG | - | chr8.2:81161390-81161409 | None:intergenic | 25.0% |
| ! | ATTGAAAAAGAGAAATGGAA+AGG | - | chr8.2:81158534-81158553 | None:intergenic | 25.0% |
| ! | ATTGCTTTCTGAATTTATGT+AGG | + | chr8.2:81159849-81159868 | MS.gene39317:intron | 25.0% |
| ! | CATTATTGTTAAAATTTGGC+AGG | + | chr8.2:81161192-81161211 | MS.gene39317:intron | 25.0% |
| ! | CTTATCATTTGAGAGAATTA+CGG | + | chr8.2:81160231-81160250 | MS.gene39317:intron | 25.0% |
| ! | CTTTACAGAAACAAATCTAA+GGG | - | chr8.2:81159722-81159741 | None:intergenic | 25.0% |
| ! | GACATAACTAACTAACTAAA+GGG | - | chr8.2:81160278-81160297 | None:intergenic | 25.0% |
| ! | GAGCTGAATAATGATTATTA+TGG | - | chr8.2:81158610-81158629 | None:intergenic | 25.0% |
| ! | TATGACATAATGAACATGAT+AGG | + | chr8.2:81160134-81160153 | MS.gene39317:intron | 25.0% |
| ! | TGACAAAATGTCATTCTTAT+AGG | - | chr8.2:81160498-81160517 | None:intergenic | 25.0% |
| ! | TGACATAACTAACTAACTAA+AGG | - | chr8.2:81160170-81160189 | None:intergenic | 25.0% |
| ! | TGTTTGGTAAGTAGAAAATA+GGG | - | chr8.2:81160439-81160458 | None:intergenic | 25.0% |
| ! | TTATTGAAACCAAAAAGGTA+CGG | + | chr8.2:81161425-81161444 | MS.gene39317:CDS | 25.0% |
| ! | TTCATTGCAAGTATTATGTT+GGG | - | chr8.2:81161389-81161408 | None:intergenic | 25.0% |
| ! | TTGAAAAAGAGAAATGGAAA+GGG | - | chr8.2:81158533-81158552 | None:intergenic | 25.0% |
| ! | TTTATTCTGATAAATGGATG+TGG | + | chr8.2:81160007-81160026 | MS.gene39317:intron | 25.0% |
| ! | TTTGAAGAAAAGGAATTAGA+GGG | + | chr8.2:81159238-81159257 | MS.gene39317:intron | 25.0% |
| !! | ACAATTTTTCTCTATTGTGA+TGG | + | chr8.2:81159209-81159228 | MS.gene39317:intron | 25.0% |
| !! | ATATTGATTGCTTACTTGTA+AGG | - | chr8.2:81160793-81160812 | None:intergenic | 25.0% |
| !! | CTTCTTATTTATCTGCAAAA+TGG | + | chr8.2:81158662-81158681 | MS.gene39317:intron | 25.0% |
| !! | TCTATTTTCAATAGCTATCT+CGG | + | chr8.2:81159575-81159594 | MS.gene39317:intron | 25.0% |
| !!! | CATTATTAGTTTTTATGCTG+AGG | - | chr8.2:81160615-81160634 | None:intergenic | 25.0% |
| !!! | CATTTTCGTTTTGAATTTTC+AGG | + | chr8.2:81158827-81158846 | MS.gene39317:intron | 25.0% |
| !!! | GTTGTTTTTGGATTTAAATC+GGG | + | chr8.2:81159029-81159048 | MS.gene39317:intron | 25.0% |
| !!! | TAGATTTGTTTCTGTAAAGT+TGG | + | chr8.2:81159723-81159742 | MS.gene39317:intron | 25.0% |
| !!! | TTTATCTGCAAAATGGATTT+TGG | + | chr8.2:81158669-81158688 | MS.gene39317:intron | 25.0% |
| !!! | TTTTGAAGAAAAGGAATTAG+AGG | + | chr8.2:81159237-81159256 | MS.gene39317:intron | 25.0% |
| AAAACTGAAAACACACAGTA+TGG | + | chr8.2:81159941-81159960 | MS.gene39317:CDS | 30.0% | |
| AAACCAAGATCCACAATATT+GGG | + | chr8.2:81159873-81159892 | MS.gene39317:CDS | 30.0% | |
| AAGATGATTGCATTCCATTT+GGG | + | chr8.2:81160913-81160932 | MS.gene39317:intron | 30.0% | |
| AATCATCTTATAGGCATGTT+CGG | - | chr8.2:81160902-81160921 | None:intergenic | 30.0% | |
| AATTACGGCATTTAGGTAAT+TGG | + | chr8.2:81160355-81160374 | MS.gene39317:intron | 30.0% | |
| AATTCAGAAAGCAATTAGAG+TGG | - | chr8.2:81159844-81159863 | None:intergenic | 30.0% | |
| AATTCCCTTAAATGGATAGT+TGG | + | chr8.2:81158990-81159009 | MS.gene39317:intron | 30.0% | |
| AGAGTTTATCTATCATTCCA+AGG | + | chr8.2:81161484-81161503 | MS.gene39317:CDS | 30.0% | |
| ATGGAATGCAATCATCTTAT+AGG | - | chr8.2:81160911-81160930 | None:intergenic | 30.0% | |
| ATTACGGCATTTAGGTAATT+GGG | + | chr8.2:81160356-81160375 | MS.gene39317:intron | 30.0% | |
| ATTGCAATCAGATTCCTATT+TGG | + | chr8.2:81159466-81159485 | MS.gene39317:intron | 30.0% | |
| CTGTTTGGTAAGTAGAAAAT+AGG | - | chr8.2:81160440-81160459 | None:intergenic | 30.0% | |
| CTTAAATGGATAGTTGGATA+CGG | + | chr8.2:81158996-81159015 | MS.gene39317:intron | 30.0% | |
| GAGTTTATCTATCATTCCAA+GGG | + | chr8.2:81161485-81161504 | MS.gene39317:CDS | 30.0% | |
| GATCATAAAGAAAATCTGTC+TGG | + | chr8.2:81161452-81161471 | MS.gene39317:CDS | 30.0% | |
| GTATCCAACTATCCATTTAA+GGG | - | chr8.2:81158997-81159016 | None:intergenic | 30.0% | |
| GTGTAGTTGTTTATCCAAAT+AGG | - | chr8.2:81159483-81159502 | None:intergenic | 30.0% | |
| GTGTGGTTTATTCTGATAAA+TGG | + | chr8.2:81160001-81160020 | MS.gene39317:intron | 30.0% | |
| GTTTGGTAAGTAGAAAATAG+GGG | - | chr8.2:81160438-81160457 | None:intergenic | 30.0% | |
| TAAGATGATTGCATTCCATT+TGG | + | chr8.2:81160912-81160931 | MS.gene39317:intron | 30.0% | |
| TATTGTCAAGACTCAAACTT+TGG | + | chr8.2:81161128-81161147 | MS.gene39317:intron | 30.0% | |
| TCATTGCAAGTATTATGTTG+GGG | - | chr8.2:81161388-81161407 | None:intergenic | 30.0% | |
| TGAAAAAGAGAAATGGAAAG+GGG | - | chr8.2:81158532-81158551 | None:intergenic | 30.0% | |
| TGCTTCATAATTCCCTTAAA+TGG | + | chr8.2:81158982-81159001 | MS.gene39317:intron | 30.0% | |
| TTAAATGGATAGTTGGATAC+GGG | + | chr8.2:81158997-81159016 | MS.gene39317:intron | 30.0% | |
| TTAATAGTCCCTAAAACGAA+AGG | - | chr8.2:81158586-81158605 | None:intergenic | 30.0% | |
| ! | AAGTGTTATTGCCATTGATT+GGG | - | chr8.2:81161046-81161065 | None:intergenic | 30.0% |
| ! | ATTTTTCTCTATTGTGATGG+AGG | + | chr8.2:81159212-81159231 | MS.gene39317:intron | 30.0% |
| ! | CTATTTTCTACTTACCAAAC+AGG | + | chr8.2:81160438-81160457 | MS.gene39317:intron | 30.0% |
| ! | GAAAGTATGATTCACTTTAG+AGG | + | chr8.2:81161079-81161098 | MS.gene39317:intron | 30.0% |
| ! | GCTTATTTGAGTTTATCTAC+TGG | - | chr8.2:81159686-81159705 | None:intergenic | 30.0% |
| !! | TGTTCTAGTTCTCTAATAGA+GGG | + | chr8.2:81160407-81160426 | MS.gene39317:intron | 30.0% |
| !! | TTTTTCTCTATTGTGATGGA+GGG | + | chr8.2:81159213-81159232 | MS.gene39317:intron | 30.0% |
| AAAGAAAATCTGTCTGGACA+TGG | + | chr8.2:81161458-81161477 | MS.gene39317:CDS | 35.0% | |
| AACCAAGATCCACAATATTG+GGG | + | chr8.2:81159874-81159893 | MS.gene39317:CDS | 35.0% | |
| AACTTATAAGGATGACATGG+TGG | + | chr8.2:81160532-81160551 | MS.gene39317:intron | 35.0% | |
| AATTACGGCATTTGGGTAAT+TGG | + | chr8.2:81160246-81160265 | MS.gene39317:intron | 35.0% | |
| ACAAGGAAATTCAAATCTCG+AGG | - | chr8.2:81159800-81159819 | None:intergenic | 35.0% | |
| ACTTACAATAGGTTTCCATC+AGG | - | chr8.2:81158862-81158881 | None:intergenic | 35.0% | |
| AGTTCTTTCAACTCAACCTA+AGG | - | chr8.2:81159436-81159455 | None:intergenic | 35.0% | |
| ATCATAACAAGATAGAGAGG+AGG | + | chr8.2:81160466-81160485 | MS.gene39317:intron | 35.0% | |
| ATGGAGTAGAATACTACTGA+GGG | + | chr8.2:81160729-81160748 | MS.gene39317:intron | 35.0% | |
| ATTACGGCATTTGGGTAATT+GGG | + | chr8.2:81160247-81160266 | MS.gene39317:intron | 35.0% | |
| CAAACCAAGATCCACAATAT+TGG | + | chr8.2:81159872-81159891 | MS.gene39317:CDS | 35.0% | |
| CGTATCCAACTATCCATTTA+AGG | - | chr8.2:81158998-81159017 | None:intergenic | 35.0% | |
| CTCAAATAAGCCAATCCAAA+CGG | + | chr8.2:81159695-81159714 | MS.gene39317:intron | 35.0% | |
| GTCTAGATATAATGCTTCTC+AGG | + | chr8.2:81161245-81161264 | MS.gene39317:CDS | 35.0% | |
| TATGGAGTAGAATACTACTG+AGG | + | chr8.2:81160728-81160747 | MS.gene39317:intron | 35.0% | |
| TCAAATAAGCCAATCCAAAC+GGG | + | chr8.2:81159696-81159715 | MS.gene39317:intron | 35.0% | |
| TCTATATCTGTATGTGTGTG+TGG | + | chr8.2:81159984-81160003 | MS.gene39317:intron | 35.0% | |
| TGGATAAACAACTACACTTG+AGG | + | chr8.2:81159486-81159505 | MS.gene39317:intron | 35.0% | |
| TTGAATACAAACACACACTC+AGG | - | chr8.2:81158923-81158942 | None:intergenic | 35.0% | |
| TTGAGAGAATTACGGCATTT+AGG | + | chr8.2:81160239-81160258 | MS.gene39317:intron | 35.0% | |
| TTGAGAGAATTACGGCATTT+GGG | + | chr8.2:81160239-81160258 | MS.gene39317:intron | 35.0% | |
| TTTCAACTCAACCTAAGGTA+TGG | - | chr8.2:81159431-81159450 | None:intergenic | 35.0% | |
| TTTGAGAGAATTACGGCATT+TGG | + | chr8.2:81160238-81160257 | MS.gene39317:intron | 35.0% | |
| ! | AGAGGGTAGCATTTTCATTT+TGG | + | chr8.2:81159255-81159274 | MS.gene39317:intron | 35.0% |
| ! | CCTCTCTATCTTGTTATGAT+GGG | - | chr8.2:81160466-81160485 | None:intergenic | 35.0% |
| ! | GAAGTGTTATTGCCATTGAT+TGG | - | chr8.2:81161047-81161066 | None:intergenic | 35.0% |
| ! | GTGTAGTACCTTTCGTTTTA+GGG | + | chr8.2:81158575-81158594 | MS.gene39317:intron | 35.0% |
| ! | TCCTCTCTATCTTGTTATGA+TGG | - | chr8.2:81160467-81160486 | None:intergenic | 35.0% |
| !! | ATGGAGGGTTTTTGAAGAAA+AGG | + | chr8.2:81159228-81159247 | MS.gene39317:intron | 35.0% |
| !! | CTTGTTGGTGTTGACAAATA+CGG | + | chr8.2:81159902-81159921 | MS.gene39317:CDS | 35.0% |
| !! | GTGTTCTAGTTCTCTAATAG+AGG | + | chr8.2:81160406-81160425 | MS.gene39317:intron | 35.0% |
| !! | GTTTCTGTAAAGTTGGTGAA+AGG | + | chr8.2:81159730-81159749 | MS.gene39317:intron | 35.0% |
| !! | TTAGTTTTTATGCTGAGGGT+GGG | - | chr8.2:81160610-81160629 | None:intergenic | 35.0% |
| !!! | ATTAGTTTTTATGCTGAGGG+TGG | - | chr8.2:81160611-81160630 | None:intergenic | 35.0% |
| AAAACCAGAATGCTTGAAGC+TGG | - | chr8.2:81160096-81160115 | None:intergenic | 40.0% | |
| AAAATTTGGCAGGAAGACAC+AGG | + | chr8.2:81161202-81161221 | MS.gene39317:intron | 40.0% | |
| AACTCAACCTAAGGTATGGT+TGG | - | chr8.2:81159427-81159446 | None:intergenic | 40.0% | |
| AAGCACTTGTGAGACTGTTT+GGG | - | chr8.2:81159660-81159679 | None:intergenic | 40.0% | |
| ACAATAGGTTTCCATCAGGA+AGG | - | chr8.2:81158858-81158877 | None:intergenic | 40.0% | |
| ACAGATATAGACAGAGAGAG+CGG | - | chr8.2:81159975-81159994 | None:intergenic | 40.0% | |
| ACAGGTATCCTTCATCTTTG+AGG | - | chr8.2:81158498-81158517 | None:intergenic | 40.0% | |
| AGAACACTGTAGAACTTCGA+GGG | - | chr8.2:81160393-81160412 | None:intergenic | 40.0% | |
| AGAGAAATGGAAAGGGGAAA+AGG | - | chr8.2:81158526-81158545 | None:intergenic | 40.0% | |
| ATGGTTGGATGGAGGATTTA+AGG | - | chr8.2:81159412-81159431 | None:intergenic | 40.0% | |
| ATTAATCCCTCGTGCATTGT+GGG | + | chr8.2:81159076-81159095 | MS.gene39317:intron | 40.0% | |
| CACTTCATAACTGATCACAC+CGG | + | chr8.2:81161294-81161313 | MS.gene39317:CDS | 40.0% | |
| CCCATCATAACAAGATAGAG+AGG | + | chr8.2:81160463-81160482 | MS.gene39317:intron | 40.0% | |
| GAAAGCAATTAGAGTGGAAG+AGG | - | chr8.2:81159838-81159857 | None:intergenic | 40.0% | |
| GAGAAATGGAAAGGGGAAAA+GGG | - | chr8.2:81158525-81158544 | None:intergenic | 40.0% | |
| GGAAAAACACGTGTAACACA+AGG | - | chr8.2:81159817-81159836 | None:intergenic | 40.0% | |
| GTCAAGACTCAAACTTTGGT+TGG | + | chr8.2:81161132-81161151 | MS.gene39317:intron | 40.0% | |
| TAAGCACTTGTGAGACTGTT+TGG | - | chr8.2:81159661-81159680 | None:intergenic | 40.0% | |
| TAGAACACTGTAGAACTTCG+AGG | - | chr8.2:81160394-81160413 | None:intergenic | 40.0% | |
| TGGGATATGGTGTAATGTTG+TGG | + | chr8.2:81160674-81160693 | MS.gene39317:intron | 40.0% | |
| TGGTTGGATGGAGGATTTAA+GGG | - | chr8.2:81159411-81159430 | None:intergenic | 40.0% | |
| TTAAACACGGTGAAGGAGAA+AGG | + | chr8.2:81158451-81158470 | MS.gene39317:CDS | 40.0% | |
| TTCAGACACCTCAAAGATGA+AGG | + | chr8.2:81158487-81158506 | MS.gene39317:CDS | 40.0% | |
| ! | ATAGTTGGATACGGGCTTTT+AGG | + | chr8.2:81159005-81159024 | MS.gene39317:intron | 40.0% |
| ! | CCATTGATTGGGAAATCAAC+GGG | - | chr8.2:81161035-81161054 | None:intergenic | 40.0% |
| ! | CGGGTTTGAAGAGAGTTTTT+AGG | + | chr8.2:81159156-81159175 | MS.gene39317:intron | 40.0% |
| ! | CGTGTAGTACCTTTCGTTTT+AGG | + | chr8.2:81158574-81158593 | MS.gene39317:intron | 40.0% |
| ! | GCCATTGATTGGGAAATCAA+CGG | - | chr8.2:81161036-81161055 | None:intergenic | 40.0% |
| ! | TAGGTAATTGGGTGGTTTGT+AGG | + | chr8.2:81160367-81160386 | MS.gene39317:intron | 40.0% |
| ! | TAGTTTTTATGCTGAGGGTG+GGG | - | chr8.2:81160609-81160628 | None:intergenic | 40.0% |
| ! | TGATCAAGACCGTACCTTTT+TGG | - | chr8.2:81161437-81161456 | None:intergenic | 40.0% |
| ! | TGTTATGATGGGAACCTGTT+TGG | - | chr8.2:81160455-81160474 | None:intergenic | 40.0% |
| !! | GGTGAAGAGCATCTTAAACA+CGG | + | chr8.2:81158438-81158457 | MS.gene39317:CDS | 40.0% |
| !!! | GGGCTTTTAGGTGTTGTTTT+TGG | + | chr8.2:81159017-81159036 | MS.gene39317:intron | 40.0% |
| AACAAATCTAAGGGCCCGTT+TGG | - | chr8.2:81159713-81159732 | None:intergenic | 45.0% | |
| AAGACCAGTTGCGATCACTT+GGG | + | chr8.2:81160061-81160080 | MS.gene39317:intron | 45.0% | |
| AAGCGAATTTACCTCATCGC+CGG | - | chr8.2:81161316-81161335 | None:intergenic | 45.0% | |
| AATATTGGGGCAACGCTTGT+TGG | + | chr8.2:81159887-81159906 | MS.gene39317:CDS | 45.0% | |
| ACGGCATTTAGGTAATTGGG+TGG | + | chr8.2:81160359-81160378 | MS.gene39317:intron | 45.0% | |
| ACTCTCTTCAAACCCGAGTT+TGG | - | chr8.2:81159152-81159171 | None:intergenic | 45.0% | |
| AGATATAGACAGAGAGAGCG+GGG | - | chr8.2:81159973-81159992 | None:intergenic | 45.0% | |
| AGGATTTAAGGGGGAACGAA+AGG | - | chr8.2:81159400-81159419 | None:intergenic | 45.0% | |
| AGTTAAGGAGTGGAGTGATG+AGG | + | chr8.2:81160567-81160586 | MS.gene39317:intron | 45.0% | |
| CAACCTAAGGTATGGTTGGA+TGG | - | chr8.2:81159423-81159442 | None:intergenic | 45.0% | |
| CAGATATAGACAGAGAGAGC+GGG | - | chr8.2:81159974-81159993 | None:intergenic | 45.0% | |
| CTCTCTTCAAACCCGAGTTT+GGG | - | chr8.2:81159151-81159170 | None:intergenic | 45.0% | |
| GAGCATCTTAAACACGGTGA+AGG | + | chr8.2:81158444-81158463 | MS.gene39317:CDS | 45.0% | |
| GATTAATCCCTCGTGCATTG+TGG | + | chr8.2:81159075-81159094 | MS.gene39317:intron | 45.0% | |
| GCACACACAATTGTCCCAAA+TGG | - | chr8.2:81160930-81160949 | None:intergenic | 45.0% | |
| GGTTGGATGGAGGATTTAAG+GGG | - | chr8.2:81159410-81159429 | None:intergenic | 45.0% | |
| GTTGGATGGAGGATTTAAGG+GGG | - | chr8.2:81159409-81159428 | None:intergenic | 45.0% | |
| TGCCCCAATATTGTGGATCT+TGG | - | chr8.2:81159879-81159898 | None:intergenic | 45.0% | |
| TGTTGTTGCATGCCCAAACT+CGG | + | chr8.2:81159136-81159155 | MS.gene39317:intron | 45.0% | |
| TTTAAGGGGGAACGAAAGGA+CGG | - | chr8.2:81159396-81159415 | None:intergenic | 45.0% | |
| !! | CCCGTTGATTTCCCAATCAA+TGG | + | chr8.2:81161032-81161051 | MS.gene39317:intron | 45.0% |
| !! | TAAGGATGACATGGTGGATG+AGG | + | chr8.2:81160538-81160557 | MS.gene39317:intron | 45.0% |
| !! | AAAAAAAAAAAAAACTTATA+AGG | + | chr8.2:81160520-81160539 | MS.gene39317:intron | 5.0% |
| AAAGGGGAAAAGGGACAGAC+AGG | - | chr8.2:81158516-81158535 | None:intergenic | 50.0% | |
| AAGGGACATGCTCTCAATCC+AGG | + | chr8.2:81161503-81161522 | MS.gene39317:CDS | 50.0% | |
| ACGGTGAAGGAGAAAGGTCT+CGG | + | chr8.2:81158457-81158476 | MS.gene39317:CDS | 50.0% | |
| AGGGACATGCTCTCAATCCA+GGG | + | chr8.2:81161504-81161523 | MS.gene39317:CDS | 50.0% | |
| ATCGCCAGCTTCAAGCATTC+TGG | + | chr8.2:81160089-81160108 | MS.gene39317:intron | 50.0% | |
| ATCTAAGGGCCCGTTTGGAT+TGG | - | chr8.2:81159708-81159727 | None:intergenic | 50.0% | |
| ATTTGGCAGGAAGACACAGG+TGG | + | chr8.2:81161205-81161224 | MS.gene39317:intron | 50.0% | |
| CAAGACCAGTTGCGATCACT+TGG | + | chr8.2:81160060-81160079 | MS.gene39317:intron | 50.0% | |
| CCTAAGGTATGGTTGGATGG+AGG | - | chr8.2:81159420-81159439 | None:intergenic | 50.0% | |
| CCTCCATCCAACCATACCTT+AGG | + | chr8.2:81159417-81159436 | MS.gene39317:intron | 50.0% | |
| CTTCTCAGGTTCCTGCTGAA+TGG | + | chr8.2:81161259-81161278 | MS.gene39317:CDS | 50.0% | |
| GGATTAATCTCCGCCATTGC+AGG | - | chr8.2:81159064-81159083 | None:intergenic | 50.0% | |
| GTGCATTGTGGGACCCAAAT+GGG | + | chr8.2:81159087-81159106 | MS.gene39317:intron | 50.0% | |
| GTTGTTGCATGCCCAAACTC+GGG | + | chr8.2:81159137-81159156 | MS.gene39317:intron | 50.0% | |
| TAAGGAGTGGAGTGATGAGG+AGG | + | chr8.2:81160570-81160589 | MS.gene39317:intron | 50.0% | |
| TCAATCCAGGGCAGAGAAAC+TGG | + | chr8.2:81161516-81161535 | MS.gene39317:CDS | 50.0% | |
| TGAGAGTTTGCCGCCCATTT+GGG | - | chr8.2:81159103-81159122 | None:intergenic | 50.0% | |
| TGGAGTGATGAGGAGGTCAA+TGG | + | chr8.2:81160577-81160596 | MS.gene39317:intron | 50.0% | |
| TGGATGAGGTGGGAGAGTTA+AGG | + | chr8.2:81160552-81160571 | MS.gene39317:intron | 50.0% | |
| TGTGTGCAACACACAGCGAA+AGG | + | chr8.2:81160943-81160962 | MS.gene39317:intron | 50.0% | |
| TTCAGGAGATGCCTTCCTGA+TGG | + | chr8.2:81158844-81158863 | MS.gene39317:intron | 50.0% | |
| TTTGGCAGGAAGACACAGGT+GGG | + | chr8.2:81161206-81161225 | MS.gene39317:intron | 50.0% | |
| ! | CAAGCGTTGCCCCAATATTG+TGG | - | chr8.2:81159886-81159905 | None:intergenic | 50.0% |
| ! | CAAGTGATCGCAACTGGTCT+TGG | - | chr8.2:81160062-81160081 | None:intergenic | 50.0% |
| ! | TGGATTGAGAGCATGTCCCT+TGG | - | chr8.2:81161504-81161523 | None:intergenic | 50.0% |
| !! | GATGACATGGTGGATGAGGT+GGG | + | chr8.2:81160542-81160561 | MS.gene39317:intron | 50.0% |
| AACTGATCACACCGGCGATG+AGG | + | chr8.2:81161302-81161321 | MS.gene39317:CDS | 55.0% | |
| ACTGGACCAGGTACCAACCA+TGG | + | chr8.2:81161534-81161553 | MS.gene39317:CDS | 55.0% | |
| CAGGTTCCTGCTGAATGGCA+TGG | + | chr8.2:81161264-81161283 | MS.gene39317:CDS | 55.0% | |
| CATTGTGGGACCCAAATGGG+CGG | + | chr8.2:81159090-81159109 | MS.gene39317:intron | 55.0% | |
| CGTGCATTGTGGGACCCAAA+TGG | + | chr8.2:81159086-81159105 | MS.gene39317:intron | 55.0% | |
| GAGGTGGGAGAGTTAAGGAG+TGG | + | chr8.2:81160557-81160576 | MS.gene39317:intron | 55.0% | |
| GTATCCTCTGCCTGCAATGG+CGG | + | chr8.2:81159051-81159070 | MS.gene39317:intron | 55.0% | |
| GTGAAGGAGAAAGGTCTCGG+CGG | + | chr8.2:81158460-81158479 | MS.gene39317:CDS | 55.0% | |
| GTGAGAGTTTGCCGCCCATT+TGG | - | chr8.2:81159104-81159123 | None:intergenic | 55.0% | |
| TTCCTGCTGAATGGCATGGC+TGG | + | chr8.2:81161268-81161287 | MS.gene39317:CDS | 55.0% | |
| TTGGGTCCCACAATGCACGA+GGG | - | chr8.2:81159085-81159104 | None:intergenic | 55.0% | |
| TTTGGGTCCCACAATGCACG+AGG | - | chr8.2:81159086-81159105 | None:intergenic | 55.0% | |
| ! | CGTTTGTGGACTGCCATGGT+TGG | - | chr8.2:81161550-81161569 | None:intergenic | 55.0% |
| ! | GGTTCGTTTGTGGACTGCCA+TGG | - | chr8.2:81161554-81161573 | None:intergenic | 55.0% |
| !! | CGCAACTGGTCTTGGCTCAA+GGG | - | chr8.2:81160054-81160073 | None:intergenic | 55.0% |
| !! | CTGGTCTTGGCTCAAGGGAT+TGG | - | chr8.2:81160049-81160068 | None:intergenic | 55.0% |
| !! | GGATGACATGGTGGATGAGG+TGG | + | chr8.2:81160541-81160560 | MS.gene39317:intron | 55.0% |
| !! | TCGCAACTGGTCTTGGCTCA+AGG | - | chr8.2:81160055-81160074 | None:intergenic | 55.0% |
| AGCCAGCCATGCCATTCAGC+AGG | - | chr8.2:81161273-81161292 | None:intergenic | 60.0% | |
| ATCTCCGCCATTGCAGGCAG+AGG | - | chr8.2:81159058-81159077 | None:intergenic | 60.0% | |
| CAGGGCAGAGAAACTGGACC+AGG | + | chr8.2:81161522-81161541 | MS.gene39317:CDS | 60.0% | |
| CGGGTATCCTCTGCCTGCAA+TGG | + | chr8.2:81159048-81159067 | MS.gene39317:intron | 60.0% | |
| CTGGTCCAGTTTCTCTGCCC+TGG | - | chr8.2:81161524-81161543 | None:intergenic | 60.0% | |
| GCAGCCCAAGTGATCGCAAC+TGG | - | chr8.2:81160068-81160087 | None:intergenic | 60.0% | |
| ! | GGACTGCCATGGTTGGTACC+TGG | - | chr8.2:81161543-81161562 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 81158424 | 81161577 | 81158424 | ID=MS.gene39317 |
| chr8.2 | mRNA | 81158424 | 81161577 | 81158424 | ID=MS.gene39317.t1;Parent=MS.gene39317 |
| chr8.2 | exon | 81158424 | 81158515 | 81158424 | ID=MS.gene39317.t1.exon1;Parent=MS.gene39317.t1 |
| chr8.2 | CDS | 81158424 | 81158515 | 81158424 | ID=cds.MS.gene39317.t1;Parent=MS.gene39317.t1 |
| chr8.2 | exon | 81158849 | 81158875 | 81158849 | ID=MS.gene39317.t1.exon2;Parent=MS.gene39317.t1 |
| chr8.2 | CDS | 81158849 | 81158875 | 81158849 | ID=cds.MS.gene39317.t1;Parent=MS.gene39317.t1 |
| chr8.2 | exon | 81159871 | 81159962 | 81159871 | ID=MS.gene39317.t1.exon3;Parent=MS.gene39317.t1 |
| chr8.2 | CDS | 81159871 | 81159962 | 81159871 | ID=cds.MS.gene39317.t1;Parent=MS.gene39317.t1 |
| chr8.2 | exon | 81161214 | 81161323 | 81161214 | ID=MS.gene39317.t1.exon4;Parent=MS.gene39317.t1 |
| chr8.2 | CDS | 81161214 | 81161323 | 81161214 | ID=cds.MS.gene39317.t1;Parent=MS.gene39317.t1 |
| chr8.2 | exon | 81161419 | 81161577 | 81161419 | ID=MS.gene39317.t1.exon5;Parent=MS.gene39317.t1 |
| chr8.2 | CDS | 81161419 | 81161577 | 81161419 | ID=cds.MS.gene39317.t1;Parent=MS.gene39317.t1 |
| Gene Sequence |
| Protein sequence |
