AlfalfaGEDB | MS.gene40353

M. sativa cultivar XinJiangDaYe / MS.gene40353

KEGG: K03036
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01399.30 PF18055.4 PF18503.4

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40353.t1	XP_024635331.1	99.3	422	3	0	1	422	1	422	4.10E-225	790.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40353.t1	Q9LP45	86.7	415	54	1	8	422	6	419	6.8e-197	688.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40353.t1	G7J2W0	99.3	422	3	0	1	422	250	671	2.9e-225	790.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene40353	MS.gene006626	PPI
MS.gene40353	MS.gene40486	PPI
MS.gene40353	MS.gene48281	PPI
MS.gene40353	MS.gene004328	PPI
MS.gene40353	MS.gene68079	PPI
MS.gene40353	MS.gene045570	PPI
MS.gene40353	MS.gene89672	PPI
MS.gene40353	MS.gene69373	PPI
MS.gene40353	MS.gene024828	PPI
MS.gene40353	MS.gene057145	PPI
MS.gene40353	MS.gene011376	PPI
MS.gene40353	MS.gene21169	PPI
MS.gene40353	MS.gene062770	PPI
MS.gene40353	MS.gene017622	PPI
MS.gene40353	MS.gene025808	PPI
MS.gene40353	MS.gene24375	PPI
MS.gene40353	MS.gene031682	PPI
MS.gene40353	MS.gene67460	PPI
MS.gene40353	MS.gene48400	PPI
MS.gene40353	MS.gene012127	PPI
MS.gene40353	MS.gene21801	PPI
MS.gene40353	MS.gene64789	PPI
MS.gene40353	MS.gene48279	PPI
MS.gene40353	MS.gene014393	PPI
MS.gene40353	MS.gene044013	PPI
MS.gene40353	MS.gene09974	PPI
MS.gene40353	MS.gene67099	PPI
MS.gene40353	MS.gene002648	PPI
MS.gene40353	MS.gene44230	PPI
MS.gene40353	MS.gene058061	PPI
MS.gene40353	MS.gene057144	PPI
MS.gene40353	MS.gene064786	PPI
MS.gene40353	MS.gene52815	PPI
MS.gene40353	MS.gene033335	PPI
MS.gene40353	MS.gene59485	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40353.t1	MTR_3g109300	99.289	422	3	0	1	422	250	671	0.0	847
MS.gene40353.t1	MTR_1g009010	93.079	419	29	0	3	421	2	420	0.0	768
MS.gene40353.t1	MTR_7g087530	24.403	377	265	8	14	379	33	400	4.69e-22	98.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40353.t1	AT1G29150	86.747	415	54	1	8	422	6	419	0.0	706
MS.gene40353.t1	AT1G29150	86.747	415	54	1	8	422	6	419	0.0	706
MS.gene40353.t1	AT2G26990	21.892	370	269	8	21	379	40	400	1.47e-16	81.6

Find 96 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GAAGCTTTGACTCTTCTTTC+TGG	0.076579	3.3:+89473647	MS.gene40353:CDS
GAAGATGTCTCAGATGATTT+TGG	0.221126	3.3:+89474300	MS.gene40353:CDS
TACACAACAACATATATTTC+AGG	0.264578	3.3:-89473961	None:intergenic
CTTAGGAATCAAGGAGAAAA+AGG	0.267105	3.3:-89473438	None:intergenic
AAGCTTTGACTCTTCTTTCT+GGG	0.325672	3.3:+89473648	MS.gene40353:CDS
CAAGAAGTTTGCTGGGACAT+TGG	0.347751	3.3:+89474324	MS.gene40353:CDS
GGGTGGAATTATTTCTTCTA+AGG	0.348906	3.3:+89474012	MS.gene40353:CDS
ACCTTCTCAGGCAAGAGAAC+AGG	0.350066	3.3:+89473378	MS.gene40353:CDS
TCTTTCATACGCAGAGCTTC+TGG	0.357829	3.3:-89473332	None:intergenic
GAAATGGTCTCTAAAGTTGC+AGG	0.361989	3.3:-89474403	None:intergenic
ATCCCTGTATGATACCCTTC+TGG	0.369495	3.3:+89474183	MS.gene40353:CDS
TGGTTGACAGTCTTTATGTT+AGG	0.381996	3.3:+89474440	MS.gene40353:CDS
CACTTTCCCAACATTGGAAA+TGG	0.391471	3.3:-89474419	None:intergenic
GAAATGTGTCTGTGAACAAT+TGG	0.398724	3.3:-89474160	None:intergenic
TATTCCACTCTGAAGATCTA+TGG	0.400897	3.3:-89473840	None:intergenic
CTGGGTTGGTCAAAGAGGTT+AGG	0.401504	3.3:+89473666	MS.gene40353:CDS
TTCCGCTCAACGTGAACAAT+TGG	0.403038	3.3:-89474280	None:intergenic
TAGAGACCATTTCCAATGTT+GGG	0.407846	3.3:+89474413	MS.gene40353:CDS
TTTGACTCTTCTTTCTGGGT+TGG	0.413470	3.3:+89473652	MS.gene40353:CDS
CAGGACTACAAGGCACAGTT+GGG	0.423474	3.3:+89474130	MS.gene40353:CDS
TTCTGGAGCAGAATCTTTGT+AGG	0.427259	3.3:+89474200	MS.gene40353:CDS
GGGTATATTGCATCAGTCTT+GGG	0.434505	3.3:-89474382	None:intergenic
CATTTCCAATGTTGGGAAAG+TGG	0.438184	3.3:+89474420	MS.gene40353:CDS
CCCTGTTCTCTTGCCTGAGA+AGG	0.446003	3.3:-89473379	None:intergenic
GAGAGCTCATGCCATGATCT+TGG	0.450538	3.3:-89474467	None:intergenic
CAAATCTTACTGACCTTCTC+AGG	0.450662	3.3:+89473366	MS.gene40353:CDS
AGGGTATATTGCATCAGTCT+TGG	0.452702	3.3:-89474383	None:intergenic
TTCAGGCTGAAAATAGCCTT+AGG	0.454754	3.3:-89473944	None:intergenic
GGAATTATTTCTTCTAAGGC+AGG	0.456178	3.3:+89474016	MS.gene40353:CDS
TCTATGGCCCCTTGTTGAGC+AGG	0.465189	3.3:-89473824	None:intergenic
GATTTCACTGTGTAAAGAAA+TGG	0.466235	3.3:+89473532	MS.gene40353:CDS
TGTTAGGTCTGCCAAGATCA+TGG	0.470208	3.3:+89474456	MS.gene40353:CDS
GGATTCAATTGCTCAGGCAT+TGG	0.471759	3.3:+89473244	MS.gene40353:CDS
ATCAAGTACACGATAAAGAA+TGG	0.473844	3.3:-89473294	None:intergenic
GCTCCAGAAGGGTATCATAC+AGG	0.475823	3.3:-89474186	None:intergenic
AAGGCAGGATTGCAATATGT+TGG	0.477736	3.3:+89474031	MS.gene40353:CDS
GCTTTCATCGCATCCAAGTC+AGG	0.487211	3.3:-89474055	None:intergenic
TTAGAGACCATTTCCAATGT+TGG	0.488579	3.3:+89474412	MS.gene40353:CDS
GTCAACCACTTTCCCAACAT+TGG	0.489301	3.3:-89474425	None:intergenic
GCAGGACTACAAGGCACAGT+TGG	0.489808	3.3:+89474129	MS.gene40353:CDS
TTCAATTGCTCAGGCATTGG+AGG	0.497862	3.3:+89473247	MS.gene40353:CDS
AGGCAGGATTGCAATATGTT+GGG	0.501095	3.3:+89474032	MS.gene40353:CDS
AACTGCTTTGCAGGACTACA+AGG	0.501162	3.3:+89474120	MS.gene40353:CDS
CAATGCTCTTGAAGACCCTA+AGG	0.511010	3.3:+89473928	MS.gene40353:CDS
GCAATATGTTGGGCCTGACT+TGG	0.511624	3.3:+89474042	MS.gene40353:CDS
CCTTCTCAGGCAAGAGAACA+GGG	0.514248	3.3:+89473379	MS.gene40353:CDS
TCAGGCTGAAAATAGCCTTA+GGG	0.519784	3.3:-89473943	None:intergenic
GCAATCTCAACTCTTGAGAA+TGG	0.520686	3.3:-89474232	None:intergenic
GCAATTGAATCCGTTGTGGC+AGG	0.520844	3.3:-89473233	None:intergenic
ATCGAATATAACGAGGCATC+CGG	0.522107	3.3:-89474356	None:intergenic
GACTCAGTTGCTAAAATACC+AGG	0.527380	3.3:+89473494	MS.gene40353:CDS
CACAACGGATTCAATTGCTC+AGG	0.533092	3.3:+89473238	MS.gene40353:CDS
AAGAGCATTGAAAGACTCAA+AGG	0.538169	3.3:-89473915	None:intergenic
AGCTCTGCGTATGAAAGAGC+AGG	0.542904	3.3:+89473337	MS.gene40353:CDS
CTCCAGAAGGGTATCATACA+GGG	0.544409	3.3:-89474185	None:intergenic
CAGCTGTTCTAGCAGCCGTG+AGG	0.548019	3.3:-89473781	None:intergenic
AGAGCTTCTGGTGAAGAAGA+TGG	0.548989	3.3:-89473320	None:intergenic
TATGTTGTTGTGTAAGATCA+TGG	0.550906	3.3:+89473970	MS.gene40353:CDS
AATACTTCATGCTGAGGAGA+AGG	0.551692	3.3:+89473859	MS.gene40353:CDS
TTCCAATTGTTCACGTTGAG+CGG	0.552851	3.3:+89474278	MS.gene40353:CDS
TCTTTCTGGGTTGGTCAAAG+AGG	0.554089	3.3:+89473661	MS.gene40353:CDS
AGCTGTTCTAGCAGCCGTGA+GGG	0.554968	3.3:-89473780	None:intergenic
TTTGCTGGGACATTGGATCA+AGG	0.555668	3.3:+89474331	MS.gene40353:CDS
AAATGTGTCTGTGAACAATT+GGG	0.557966	3.3:-89474159	None:intergenic
TATGTGCCTCCTGCTCAACA+AGG	0.559971	3.3:+89473815	MS.gene40353:CDS
ATCTGTAGATCAGATGTCCC+TGG	0.569702	3.3:-89473512	None:intergenic
TACAAAGATTCTGCTCCAGA+AGG	0.569886	3.3:-89474198	None:intergenic
AGAATGGATATCGCATCAGA+AGG	0.570735	3.3:-89473278	None:intergenic
GAATGGATATCGCATCAGAA+GGG	0.585707	3.3:-89473277	None:intergenic
GGGACATTGGATCAAGGTGC+CGG	0.586404	3.3:+89474337	MS.gene40353:CDS
GCAGCCTTCTCACTTCATTG+AGG	0.586407	3.3:+89473414	MS.gene40353:CDS
CTCATTAAGAAACCTTCCAA+AGG	0.587775	3.3:+89473748	MS.gene40353:CDS
CAGGCAAGAGAACAGGGGAG+AGG	0.594061	3.3:+89473385	MS.gene40353:CDS
ATCTTATCTTCCTGCCACAA+CGG	0.596364	3.3:+89473223	MS.gene40353:CDS
AAAGGCAAAAGCTGCCCTCA+CGG	0.605293	3.3:+89473766	MS.gene40353:CDS
AAGGTCAGTAAGATTTGTGA+TGG	0.606087	3.3:-89473360	None:intergenic
AGGGCCTCAATGAAGTGAGA+AGG	0.611750	3.3:-89473418	None:intergenic
ATGTGCCTCCTGCTCAACAA+GGG	0.612734	3.3:+89473816	MS.gene40353:CDS
ATGGCCCCTTGTTGAGCAGG+AGG	0.618931	3.3:-89473821	None:intergenic
ACAAAGATTCTGCTCCAGAA+GGG	0.620348	3.3:-89474197	None:intergenic
AAAACTGCAAAGATTGTAAG+GGG	0.631797	3.3:+89473464	MS.gene40353:CDS
GAGTGGAATACTTCATGCTG+AGG	0.636952	3.3:+89473853	MS.gene40353:CDS
AAATGGTCTCTAAAGTTGCA+GGG	0.639902	3.3:-89474402	None:intergenic
TGTGCCTCCTGCTCAACAAG+GGG	0.645095	3.3:+89473817	MS.gene40353:CDS
AGGAAGATAAGATGTAGACA+TGG	0.676910	3.3:-89473213	None:intergenic
AGGACTACAAGGCACAGTTG+GGG	0.686447	3.3:+89474131	MS.gene40353:CDS
GGACTACAAGGCACAGTTGG+GGG	0.689123	3.3:+89474132	MS.gene40353:CDS
CTGAGCAATTGAATCCGTTG+TGG	0.699339	3.3:-89473237	None:intergenic
TGTGTAAAGAAATGGTGCAG+TGG	0.703348	3.3:+89473540	MS.gene40353:CDS
AATCAAGCTGATGACGTGGG+TGG	0.707192	3.3:+89473995	MS.gene40353:CDS
CTTCTCAGGCAAGAGAACAG+GGG	0.711755	3.3:+89473380	MS.gene40353:CDS
ACTCAGTTGCTAAAATACCA+GGG	0.713806	3.3:+89473495	MS.gene40353:CDS
GGTGAATCAAGCTGATGACG+TGG	0.718460	3.3:+89473991	MS.gene40353:CDS
GGGGCCATAGATCTTCAGAG+TGG	0.726182	3.3:+89473836	MS.gene40353:CDS
GTGAATCAAGCTGATGACGT+GGG	0.744573	3.3:+89473992	MS.gene40353:CDS
TGGGATCATCGAATATAACG+AGG	0.757360	3.3:-89474363	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	AAAAACTGCAAAGATTGTAA+GGG	+	chr3.3:89473463-89473482	MS.gene40353:CDS	25.0%
!	TACACAACAACATATATTTC+AGG	-	chr3.3:89473964-89473983	None:intergenic	25.0%
	AAAACTGCAAAGATTGTAAG+GGG	+	chr3.3:89473464-89473483	MS.gene40353:CDS	30.0%
	AAATGTGTCTGTGAACAATT+GGG	-	chr3.3:89474162-89474181	None:intergenic	30.0%
	AAGCAGTTTCGAAAAACTTA+AGG	-	chr3.3:89474108-89474127	None:intergenic	30.0%
	AGCAGTTTCGAAAAACTTAA+GGG	-	chr3.3:89474107-89474126	None:intergenic	30.0%
	ATCAAGTACACGATAAAGAA+TGG	-	chr3.3:89473297-89473316	None:intergenic	30.0%
	CAAAAACTGCAAAGATTGTA+AGG	+	chr3.3:89473462-89473481	MS.gene40353:CDS	30.0%
	GATTTCACTGTGTAAAGAAA+TGG	+	chr3.3:89473532-89473551	MS.gene40353:CDS	30.0%
	TATGTTGTTGTGTAAGATCA+TGG	+	chr3.3:89473970-89473989	MS.gene40353:CDS	30.0%
	TTAGGAATCAAGGAGAAAAA+GGG	-	chr3.3:89473440-89473459	None:intergenic	30.0%
	AAGGTCAGTAAGATTTGTGA+TGG	-	chr3.3:89473363-89473382	None:intergenic	35.0%
	ACTCAGTTGCTAAAATACCA+GGG	+	chr3.3:89473495-89473514	MS.gene40353:CDS	35.0%
	CTCATTAAGAAACCTTCCAA+AGG	+	chr3.3:89473748-89473767	MS.gene40353:CDS	35.0%
	CTTAGGAATCAAGGAGAAAA+AGG	-	chr3.3:89473441-89473460	None:intergenic	35.0%
	GAAATGTGTCTGTGAACAAT+TGG	-	chr3.3:89474163-89474182	None:intergenic	35.0%
	TAGAGACCATTTCCAATGTT+GGG	+	chr3.3:89474413-89474432	MS.gene40353:CDS	35.0%
	TGGTTGACAGTCTTTATGTT+AGG	+	chr3.3:89474440-89474459	MS.gene40353:CDS	35.0%
	TTAGAGACCATTTCCAATGT+TGG	+	chr3.3:89474412-89474431	MS.gene40353:CDS	35.0%
!	AAGCTTTGACTCTTCTTTCT+GGG	+	chr3.3:89473648-89473667	MS.gene40353:CDS	35.0%
!	AGTTTTTGCCTTAGGAATCA+AGG	-	chr3.3:89473450-89473469	None:intergenic	35.0%
!	ATCTTTGCAGTTTTTGCCTT+AGG	-	chr3.3:89473458-89473477	None:intergenic	35.0%
!	ATTTTGGACAAGAAGTTTGC+TGG	+	chr3.3:89474316-89474335	MS.gene40353:CDS	35.0%
!	CTTTTTCTCCTTGATTCCTA+AGG	+	chr3.3:89473439-89473458	MS.gene40353:CDS	35.0%
!	GAAGATGTCTCAGATGATTT+TGG	+	chr3.3:89474300-89474319	MS.gene40353:CDS	35.0%
!	GGGTGGAATTATTTCTTCTA+AGG	+	chr3.3:89474012-89474031	MS.gene40353:CDS	35.0%
!	TATTCCACTCTGAAGATCTA+TGG	-	chr3.3:89473843-89473862	None:intergenic	35.0%
!!	AAATGGTCTCTAAAGTTGCA+GGG	-	chr3.3:89474405-89474424	None:intergenic	35.0%
!!	AAGAGCATTGAAAGACTCAA+AGG	-	chr3.3:89473918-89473937	None:intergenic	35.0%
!!	GGAATTATTTCTTCTAAGGC+AGG	+	chr3.3:89474016-89474035	MS.gene40353:CDS	35.0%
!!	TTTTGGACAAGAAGTTTGCT+GGG	+	chr3.3:89474317-89474336	MS.gene40353:CDS	35.0%
	AAGGCAGGATTGCAATATGT+TGG	+	chr3.3:89474031-89474050	MS.gene40353:CDS	40.0%
	AATACTTCATGCTGAGGAGA+AGG	+	chr3.3:89473859-89473878	MS.gene40353:CDS	40.0%
	ACAAAGATTCTGCTCCAGAA+GGG	-	chr3.3:89474200-89474219	None:intergenic	40.0%
	AGAATGGATATCGCATCAGA+AGG	-	chr3.3:89473281-89473300	None:intergenic	40.0%
	AGGCAGGATTGCAATATGTT+GGG	+	chr3.3:89474032-89474051	MS.gene40353:CDS	40.0%
	AGGGTATATTGCATCAGTCT+TGG	-	chr3.3:89474386-89474405	None:intergenic	40.0%
	ATCTTATCTTCCTGCCACAA+CGG	+	chr3.3:89473223-89473242	MS.gene40353:CDS	40.0%
	CAAATCTTACTGACCTTCTC+AGG	+	chr3.3:89473366-89473385	MS.gene40353:CDS	40.0%
	CACTTTCCCAACATTGGAAA+TGG	-	chr3.3:89474422-89474441	None:intergenic	40.0%
	CATTTCCAATGTTGGGAAAG+TGG	+	chr3.3:89474420-89474439	MS.gene40353:CDS	40.0%
	GAATGGATATCGCATCAGAA+GGG	-	chr3.3:89473280-89473299	None:intergenic	40.0%
	GACTCAGTTGCTAAAATACC+AGG	+	chr3.3:89473494-89473513	MS.gene40353:CDS	40.0%
	GCAATCTCAACTCTTGAGAA+TGG	-	chr3.3:89474235-89474254	None:intergenic	40.0%
	GGGTATATTGCATCAGTCTT+GGG	-	chr3.3:89474385-89474404	None:intergenic	40.0%
	TACAAAGATTCTGCTCCAGA+AGG	-	chr3.3:89474201-89474220	None:intergenic	40.0%
	TGGGATCATCGAATATAACG+AGG	-	chr3.3:89474366-89474385	None:intergenic	40.0%
	TGTGTAAAGAAATGGTGCAG+TGG	+	chr3.3:89473540-89473559	MS.gene40353:CDS	40.0%
	TTCAGGCTGAAAATAGCCTT+AGG	-	chr3.3:89473947-89473966	None:intergenic	40.0%
	TTCCAATTGTTCACGTTGAG+CGG	+	chr3.3:89474278-89474297	MS.gene40353:CDS	40.0%
	TTTGACTCTTCTTTCTGGGT+TGG	+	chr3.3:89473652-89473671	MS.gene40353:CDS	40.0%
!	AGCGCTTTTGATGGAAACTA+AGG	+	chr3.3:89473616-89473635	MS.gene40353:CDS	40.0%
!	ATCGAATATAACGAGGCATC+CGG	-	chr3.3:89474359-89474378	None:intergenic	40.0%
!	GAAGCTTTGACTCTTCTTTC+TGG	+	chr3.3:89473647-89473666	MS.gene40353:CDS	40.0%
!	TCAGGCTGAAAATAGCCTTA+GGG	-	chr3.3:89473946-89473965	None:intergenic	40.0%
!!	CTGAAAAGCGTACTTTTCTG+AGG	+	chr3.3:89473570-89473589	MS.gene40353:CDS	40.0%
!!	GAAATGGTCTCTAAAGTTGC+AGG	-	chr3.3:89474406-89474425	None:intergenic	40.0%
!!	GTTTTTCGAAACTGCTTTGC+AGG	+	chr3.3:89474111-89474130	MS.gene40353:CDS	40.0%
!!	TTCTGGAGCAGAATCTTTGT+AGG	+	chr3.3:89474200-89474219	MS.gene40353:CDS	40.0%
!!!	TTTTCTGAGGCAACGAATTG+AGG	+	chr3.3:89473583-89473602	MS.gene40353:CDS	40.0%
	AACTGCTTTGCAGGACTACA+AGG	+	chr3.3:89474120-89474139	MS.gene40353:CDS	45.0%
	AGAGCTTCTGGTGAAGAAGA+TGG	-	chr3.3:89473323-89473342	None:intergenic	45.0%
	ATCCCTGTATGATACCCTTC+TGG	+	chr3.3:89474183-89474202	MS.gene40353:CDS	45.0%
	ATCTGTAGATCAGATGTCCC+TGG	-	chr3.3:89473515-89473534	None:intergenic	45.0%
	CAATGCTCTTGAAGACCCTA+AGG	+	chr3.3:89473928-89473947	MS.gene40353:CDS	45.0%
	CTGAGCAATTGAATCCGTTG+TGG	-	chr3.3:89473240-89473259	None:intergenic	45.0%
	GAGTGGAATACTTCATGCTG+AGG	+	chr3.3:89473853-89473872	MS.gene40353:CDS	45.0%
	GGATTCAATTGCTCAGGCAT+TGG	+	chr3.3:89473244-89473263	MS.gene40353:CDS	45.0%
	GTCAACCACTTTCCCAACAT+TGG	-	chr3.3:89474428-89474447	None:intergenic	45.0%
	TCTTTCATACGCAGAGCTTC+TGG	-	chr3.3:89473335-89473354	None:intergenic	45.0%
	TGTTAGGTCTGCCAAGATCA+TGG	+	chr3.3:89474456-89474475	MS.gene40353:CDS	45.0%
	TTCCGCTCAACGTGAACAAT+TGG	-	chr3.3:89474283-89474302	None:intergenic	45.0%
	TTTGCTGGGACATTGGATCA+AGG	+	chr3.3:89474331-89474350	MS.gene40353:CDS	45.0%
!	AAGACTTGCAGCGCTTTTGA+TGG	+	chr3.3:89473607-89473626	MS.gene40353:CDS	45.0%
!	CACAACGGATTCAATTGCTC+AGG	+	chr3.3:89473238-89473257	MS.gene40353:CDS	45.0%
!	GTGAATCAAGCTGATGACGT+GGG	+	chr3.3:89473992-89474011	MS.gene40353:CDS	45.0%
!!	CAAGAAGTTTGCTGGGACAT+TGG	+	chr3.3:89474324-89474343	MS.gene40353:CDS	45.0%
!!	CTCCAGAAGGGTATCATACA+GGG	-	chr3.3:89474188-89474207	None:intergenic	45.0%
!!	TCTTTCTGGGTTGGTCAAAG+AGG	+	chr3.3:89473661-89473680	MS.gene40353:CDS	45.0%
!!	TTCAATTGCTCAGGCATTGG+AGG	+	chr3.3:89473247-89473266	MS.gene40353:CDS	45.0%
	AAAGGCAAAAGCTGCCCTCA+CGG	+	chr3.3:89473766-89473785	MS.gene40353:CDS	50.0%
	ACCTTCTCAGGCAAGAGAAC+AGG	+	chr3.3:89473378-89473397	MS.gene40353:CDS	50.0%
	AGCTCTGCGTATGAAAGAGC+AGG	+	chr3.3:89473337-89473356	MS.gene40353:CDS	50.0%
	AGGACTACAAGGCACAGTTG+GGG	+	chr3.3:89474131-89474150	MS.gene40353:CDS	50.0%
	AGGGCCTCAATGAAGTGAGA+AGG	-	chr3.3:89473421-89473440	None:intergenic	50.0%
	ATGTGCCTCCTGCTCAACAA+GGG	+	chr3.3:89473816-89473835	MS.gene40353:CDS	50.0%
	CAGGACTACAAGGCACAGTT+GGG	+	chr3.3:89474130-89474149	MS.gene40353:CDS	50.0%
	CCTTCTCAGGCAAGAGAACA+GGG	+	chr3.3:89473379-89473398	MS.gene40353:CDS	50.0%
	CTTCTCAGGCAAGAGAACAG+GGG	+	chr3.3:89473380-89473399	MS.gene40353:CDS	50.0%
	GCAATATGTTGGGCCTGACT+TGG	+	chr3.3:89474042-89474061	MS.gene40353:CDS	50.0%
	GCAATTGAATCCGTTGTGGC+AGG	-	chr3.3:89473236-89473255	None:intergenic	50.0%
	GCAGCCTTCTCACTTCATTG+AGG	+	chr3.3:89473414-89473433	MS.gene40353:CDS	50.0%
	GCTTTCATCGCATCCAAGTC+AGG	-	chr3.3:89474058-89474077	None:intergenic	50.0%
	TATGTGCCTCCTGCTCAACA+AGG	+	chr3.3:89473815-89473834	MS.gene40353:CDS	50.0%
!	AATCAAGCTGATGACGTGGG+TGG	+	chr3.3:89473995-89474014	MS.gene40353:CDS	50.0%
!	GGTGAATCAAGCTGATGACG+TGG	+	chr3.3:89473991-89474010	MS.gene40353:CDS	50.0%
!!	CTGGGTTGGTCAAAGAGGTT+AGG	+	chr3.3:89473666-89473685	MS.gene40353:CDS	50.0%
!!	GCTCCAGAAGGGTATCATAC+AGG	-	chr3.3:89474189-89474208	None:intergenic	50.0%
	AGCTGTTCTAGCAGCCGTGA+GGG	-	chr3.3:89473783-89473802	None:intergenic	55.0%
	CCCTGTTCTCTTGCCTGAGA+AGG	-	chr3.3:89473382-89473401	None:intergenic	55.0%
	GCAGGACTACAAGGCACAGT+TGG	+	chr3.3:89474129-89474148	MS.gene40353:CDS	55.0%
	GGACTACAAGGCACAGTTGG+GGG	+	chr3.3:89474132-89474151	MS.gene40353:CDS	55.0%
	GGGACATTGGATCAAGGTGC+CGG	+	chr3.3:89474337-89474356	MS.gene40353:CDS	55.0%
	GGGGCCATAGATCTTCAGAG+TGG	+	chr3.3:89473836-89473855	MS.gene40353:CDS	55.0%
	TCTATGGCCCCTTGTTGAGC+AGG	-	chr3.3:89473827-89473846	None:intergenic	55.0%
	TGTGCCTCCTGCTCAACAAG+GGG	+	chr3.3:89473817-89473836	MS.gene40353:CDS	55.0%
!	GGGCAGCTTTTGCCTTTGGA+AGG	-	chr3.3:89473763-89473782	None:intergenic	55.0%
!	GTGAGGGCAGCTTTTGCCTT+TGG	-	chr3.3:89473767-89473786	None:intergenic	55.0%
	ATGGCCCCTTGTTGAGCAGG+AGG	-	chr3.3:89473824-89473843	None:intergenic	60.0%
	CAGCTGTTCTAGCAGCCGTG+AGG	-	chr3.3:89473784-89473803	None:intergenic	60.0%
	CAGGCAAGAGAACAGGGGAG+AGG	+	chr3.3:89473385-89473404	MS.gene40353:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	89473215	89474483	89473215	ID=MS.gene40353
chr3.3	mRNA	89473215	89474483	89473215	ID=MS.gene40353.t1;Parent=MS.gene40353
chr3.3	exon	89473215	89474483	89473215	ID=MS.gene40353.t1.exon1;Parent=MS.gene40353.t1
chr3.3	CDS	89473215	89474483	89473215	ID=cds.MS.gene40353.t1;Parent=MS.gene40353.t1

Gene Sequence

>MS.gene40353

ATGTCTACATCTTATCTTCCTGCCACAACGGATTCAATTGCTCAGGCATTGGAGGCTAAAGACCCTTCTGATGCGATATCCATTCTTTATCGTGTACTTGATGATCCATCTTCTTCACCAGAAGCTCTGCGTATGAAAGAGCAGGCCATCACAAATCTTACTGACCTTCTCAGGCAAGAGAACAGGGGAGAGGATCTGCGCAGCCTTCTCACTTCATTGAGGCCCTTTTTCTCCTTGATTCCTAAGGCAAAAACTGCAAAGATTGTAAGGGGAATAATTGACTCAGTTGCTAAAATACCAGGGACATCTGATCTACAGATTTCACTGTGTAAAGAAATGGTGCAGTGGACTCGTGCTGAAAAGCGTACTTTTCTGAGGCAACGAATTGAGGCAAGACTTGCAGCGCTTTTGATGGAAACTAAGGAGTATTCAGAAGCTTTGACTCTTCTTTCTGGGTTGGTCAAAGAGGTTAGGAGATTAGATGACAAACTTCTTCTTGTAGACATTGACTTGCTCGAAAGCAAACTGCACTTCTCATTAAGAAACCTTCCAAAGGCAAAAGCTGCCCTCACGGCTGCTAGAACAGCTGCAAATGCTATTTATGTGCCTCCTGCTCAACAAGGGGCCATAGATCTTCAGAGTGGAATACTTCATGCTGAGGAGAAGGACTACAAAACTGCATACAGCTATTTCTTTGAAGCCTTTGAGTCTTTCAATGCTCTTGAAGACCCTAAGGCTATTTTCAGCCTGAAATATATGTTGTTGTGTAAGATCATGGTGAATCAAGCTGATGACGTGGGTGGAATTATTTCTTCTAAGGCAGGATTGCAATATGTTGGGCCTGACTTGGATGCGATGAAAGCTGTTGCTGATGCTTATTCTAAGCGATCCCTTAAGTTTTTCGAAACTGCTTTGCAGGACTACAAGGCACAGTTGGGGGAAGACCCAATTGTTCACAGACACATTTCATCCCTGTATGATACCCTTCTGGAGCAGAATCTTTGTAGGTTGATTGAGCCATTCTCAAGAGTTGAGATTGCACATATTGCTGAGCTTATCGAGCTTCCAATTGTTCACGTTGAGCGGAAGATGTCTCAGATGATTTTGGACAAGAAGTTTGCTGGGACATTGGATCAAGGTGCCGGATGCCTCGTTATATTCGATGATCCCAAGACTGATGCAATATACCCTGCAACTTTAGAGACCATTTCCAATGTTGGGAAAGTGGTTGACAGTCTTTATGTTAGGTCTGCCAAGATCATGGCATGA

Protein sequence

>MS.gene40353.t1

MSTSYLPATTDSIAQALEAKDPSDAISILYRVLDDPSSSPEALRMKEQAITNLTDLLRQENRGEDLRSLLTSLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQISLCKEMVQWTRAEKRTFLRQRIEARLAALLMETKEYSEALTLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAIFSLKYMLLCKIMVNQADDVGGIISSKAGLQYVGPDLDAMKAVADAYSKRSLKFFETALQDYKAQLGEDPIVHRHISSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPIVHVERKMSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNVGKVVDSLYVRSAKIMA