AlfalfaGEDB | MS.gene44404

M. sativa cultivar XinJiangDaYe / MS.gene44404

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0097159 GO:1901363
PFAM: PF00076.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44404.t1	XP_013470441.1	92	286	12	1	79	364	216	490	8.10E-113	417.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44404.t1	Q7XTT4	28.7	181	114	4	85	251	451	630	4.3e-14	80.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44404.t1	A0A072VR57	92.0	286	12	1	79	364	216	490	5.8e-113	417.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene44404	0.827619	1.42E-54	-1.69E-46
MS.gene049159	MS.gene44404	0.866351	3.04E-65	-1.69E-46
MS.gene049255	MS.gene44404	0.816919	4.31E-52	-1.69E-46
MS.gene049435	MS.gene44404	0.80013	1.66E-48	-1.69E-46
MS.gene049501	MS.gene44404	0.820498	6.64E-53	-1.69E-46
MS.gene049850	MS.gene44404	0.824954	6.10E-54	-1.69E-46
MS.gene049983	MS.gene44404	0.800703	1.27E-48	-1.69E-46
MS.gene050689	MS.gene44404	0.845563	3.76E-59	-1.69E-46
MS.gene050759	MS.gene44404	0.814058	1.87E-51	-1.69E-46
MS.gene050815	MS.gene44404	0.814015	1.91E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44404.t1	MTR_1g115375	93.151	365	11	3	1	364	139	490	0.0	637
MS.gene44404.t1	MTR_4g104470	28.161	174	113	6	84	249	123	292	2.43e-15	76.3
MS.gene44404.t1	MTR_1g045510	31.214	173	114	4	80	249	110	280	1.87e-14	73.2
MS.gene44404.t1	MTR_4g074930	25.248	202	131	6	68	253	350	547	2.74e-14	74.7
MS.gene44404.t1	MTR_4g074930	25.248	202	131	6	68	253	362	559	2.74e-14	74.7
MS.gene44404.t1	MTR_4g074930	25.248	202	131	6	68	253	315	512	2.89e-14	74.3
MS.gene44404.t1	MTR_4g074930	25.248	202	131	6	68	253	327	524	3.06e-14	74.3
MS.gene44404.t1	MTR_3g075500	29.213	178	109	6	84	249	110	282	5.34e-13	69.3
MS.gene44404.t1	MTR_2g022950	27.225	191	131	5	78	262	55	243	1.96e-12	67.4
MS.gene44404.t1	MTR_7g106440	25.137	183	124	5	80	249	106	288	2.89e-12	67.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44404.t1	AT3G55340	43.003	293	126	7	72	354	150	411	5.70e-70	230
MS.gene44404.t1	AT3G18610	26.178	191	128	5	72	253	314	500	2.44e-14	74.7
MS.gene44404.t1	AT3G18610	26.178	191	128	5	72	253	344	530	2.50e-14	74.7
MS.gene44404.t1	AT3G18610	26.178	191	128	5	72	253	374	560	2.90e-14	74.7
MS.gene44404.t1	AT1G60000	29.651	172	117	4	81	249	83	253	7.32e-14	71.2
MS.gene44404.t1	AT4G24770	28.655	171	116	5	84	249	151	320	1.01e-13	71.6
MS.gene44404.t1	AT4G24770	28.655	171	116	5	84	249	151	320	1.01e-13	71.6
MS.gene44404.t1	AT5G50250	28.070	171	117	5	84	249	114	283	2.42e-13	70.1
MS.gene44404.t1	AT1G01080	27.647	170	110	4	84	240	109	278	2.34e-12	67.4
MS.gene44404.t1	AT1G01080	26.705	176	116	4	84	246	109	284	7.09e-12	65.9

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Find 80 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGAGCATTGGCTCTTGA+TGG	0.432294	1.2:+85323520	MS.gene44404:CDS
AAAGAAGAACAAAACTGCAG+AGG	0.588575	1.2:+85321648	MS.gene44404:CDS
AAAGGCCATACGACTTGGTA+TGG	0.529863	1.2:+85323791	MS.gene44404:CDS
AAATAACAGAGGAAGAACTA+AGG	0.575629	1.2:+85323745	MS.gene44404:CDS
AACAAAACTGCAGAGGAAAA+TGG	0.393203	1.2:+85321655	MS.gene44404:CDS
AACTGCAGAGGAAAATGGTA+AGG	0.561255	1.2:+85321660	MS.gene44404:CDS
AAGCAGCTATTTGTGGGTTT+GGG	0.330204	1.2:-85324250	None:intergenic
AAGGAAACGGGAGAATTTCG+AGG	0.577973	1.2:+85323816	MS.gene44404:CDS
AATGATGATAGTGTTGCTAA+TGG	0.456928	1.2:+85321547	MS.gene44404:CDS
AATGCCACAATCTACGGTAT+TGG	0.479144	1.2:+85321723	MS.gene44404:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAACAGAGGAAGAACTA+AGG	+	chr1.2:85323745-85323764	MS.gene44404:CDS	30.0%
AAGAAATAGATGACATTGAG+AGG	+	chr1.2:85322424-85322443	MS.gene44404:intron	30.0%
AGAAAAGATGGTAAGAAACT+CGG	+	chr1.2:85322283-85322302	MS.gene44404:intron	30.0%
AGAAATAGATGACATTGAGA+GGG	+	chr1.2:85322425-85322444	MS.gene44404:intron	30.0%
ATAGATAAATCACCTTGTAG+TGG	-	chr1.2:85321761-85321780	None:intergenic	30.0%
CATGCAATTAATTTCAGTGA+TGG	-	chr1.2:85323155-85323174	None:intergenic	30.0%
CATTATAGGTCTATTTCCAT+CGG	+	chr1.2:85323361-85323380	MS.gene44404:intron	30.0%
CCTCACCTTAAAACTAATTA+TGG	-	chr1.2:85323212-85323231	None:intergenic	30.0%
CTTCTCAAATTGCAATGTAA+AGG	+	chr1.2:85323773-85323792	MS.gene44404:CDS	30.0%
GAAAATATTGTAGAGAGTTG+GGG	+	chr1.2:85322247-85322266	MS.gene44404:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	85321544	85324286	85321544	ID=MS.gene44404
chr1.2	mRNA	85321544	85324286	85321544	ID=MS.gene44404.t1;Parent=MS.gene44404
chr1.2	exon	85321544	85321767	85321544	ID=MS.gene44404.t1.exon1;Parent=MS.gene44404.t1
chr1.2	CDS	85321544	85321767	85321544	ID=cds.MS.gene44404.t1;Parent=MS.gene44404.t1
chr1.2	exon	85323054	85323225	85323054	ID=MS.gene44404.t1.exon2;Parent=MS.gene44404.t1
chr1.2	CDS	85323054	85323225	85323054	ID=cds.MS.gene44404.t1;Parent=MS.gene44404.t1
chr1.2	exon	85323505	85323551	85323505	ID=MS.gene44404.t1.exon3;Parent=MS.gene44404.t1
chr1.2	CDS	85323505	85323551	85323505	ID=cds.MS.gene44404.t1;Parent=MS.gene44404.t1
chr1.2	exon	85323635	85324286	85323635	ID=MS.gene44404.t1.exon4;Parent=MS.gene44404.t1
chr1.2	CDS	85323635	85324286	85323635	ID=cds.MS.gene44404.t1;Parent=MS.gene44404.t1

Gene Sequence

>MS.gene44404

AAGAATGATGATAGTGTTGCTAATGGGGTTGTTGTTGTTAAGGATGCAAAAAAATCAATGAAAAAGGAGAAGCAAAAGAAGAAGAATCAATTGAAGAAGAAGAGAAAGAAGAACAAAACTGCAGAGGAAAATGGTAAGGCCAAAATTGCAGAGGAGAATGATTCTAATCATCAAGAGGAAATGCCACAATCTACGGTATTGGCTAACACTACTACCACTACAAGGTGATTTATCTATTATTTTTTTTTTTTTTCTTACTTATGAAGGTTAATTTATCATTGTTCATTTTGTTCAGTTGATAAATGTCTCAAACAATGTAATGGTTGGATTTTTATTTAATGTGTGTTTGGTGCTATGGTAACAAAGATTGATTTTGAATGAATTTATGGTTGAATACATTCATGTAAAATATGCTTGAACAATAAATTTGTGACTAAAATTCAATTGTAGAGGCAATAGCTACAAATTTTAGCGCAAGTTTGAATCAATTCTGGAGGCAAAATCAATGATACTTTAAAAGTGGAACCAAACATATACTTAATATTGATTTTGTGTGAAGGAAAGAAATATAGTATAGTGTTTTTGAGATAAATTATGCTGCATTTTTTGTTTTTATTTGTTTATATACAATAATAGAATGATAAATGAGGATGTGCGTTGGATGTGTGGTAAGACTAGATATGCTAGATATAGAATTAGAAATGAAAATATTGTAGAGAGTTGGGGTAGCACCTATTGTAGAAAAGATGGTAAGAAACTCGGCTTAGGTGGTTTGGACATGTAGAGAGAAGACATGTAGATTCTATATAGTAAGGCTTTGTTTGCGAGTTTGGAGGGGAAGGGAGGGGAGGGGTTTGTAAAAAAAGGAAGGAGCAAGTAGAAGAAATAGATGACATTGAGAGGGGAAGGCTTTGGGGTTTCATTTTTCTTCATAATTCAAAACCCTCCTCATTTGGGGGGGGCTTTGGGGTTTCATTTTTCTACATAATTTAAAACCCTCCTCATTTGGGGGAACTCAAAAATTGTATTGGAGGAGGGTTTTGGAGGGTTTACATGAATTCTTCAAATTTAATCTAAGTAGTTATAATATTCTTAAAATTAAAAATATATTAATCATAAACATTAATTTATCATTCTCTAAAAAATTACTCTTTCAAAAAATGTGGAAGATTTTACAATTTTCCCCTATATTCCCAACCCTCCAGAGCCTTCCCTTCCCCTCCCCTCCAAACTCCCAAACAAAGCCTAAGGGAAGTAAATCAGATGAGAGTAGTCAAACCACTAGAGGCAGAGGAAGACCTAGAAAAACTTTAATTGAAACTATTATGAATCTAGAGACTAGAGATTAATGAGCTGGATAGGGCTATGATATATGATAGAACATTATGGCGGCGATTGATCCATGTAGCCGACCCTTGATTGTTGTTATTATTGTTGATGTTATTTGACATACAATGAGATTTCTGTCCCAGTTTTTTAATTGATTATCTGTTCTGTAATGTTCATGCAGTCAAGAAAATGGTGATGTTGCTACGAAAGTTTATGTTGGAGGAATTCCCTACTATTCAAGTGAGGATGACATTCACAGTTATTTTGAAGGCTGTGGCACCATCACTGAAATTAATTGCATGACTTTTCCTGACACTGGCAAGTTTAGGGGGATTGCCATAATTAGTTTTAAGGTGAGGGCTAAAACAAGCATTTTTAGCTTTATTTTGTTGGTATTTTGCAATTTCAAGTCAAATCTAGAAACTCTTTTTGTGCTTCCTTATATGGTAGGATTGATTGCAATGTTTCAGCAGGCTATACTAGCAATACATTATAGGTCTATTTCCATCGGTTCATATATTATTTTCGAGTTTATTCTCACTTATAGTTAACACCTTACAATTCCAAAAATCGATTCTTATTATGGAGCATTTCGACAACTTGCTGACGTTTCTGTGGCATTCTTCCTGCAGACTGAAGCAGCGGCCAAACGAGCATTGGCTCTTGATGGAGCTGACATGTTAGTAACACTATCAATATTTTATAATTCACTGCATTCACTCATTTTTTATTTCATGCTTGTAAAACATTTAATGTTAACAGGGGAGGACTCTTTCTTAAAATTCAACCATGTAAAGCAACTCAAGCAACCCGATTTACTCCAGAAATGAAGGAGGGATATAATAGAATATATGTTGGAAGTCTGTCATGGGAAATAACAGAGGAAGAACTAAGGAAATTCTTCTCAAATTGCAATGTAAAGGCCATACGACTTGGTATGGACAAGGAAACGGGAGAATTTCGAGGGTATGCTCATGTTGATTTCAGTGATAGTCAGTCACTGAAGACAGCACTTGCATTGGACCAAAGTGTCTTGTTTGGAAGGCCTGTCAGGATAAGTTGTGCGGTTCCTTTGAACAAAAAACCAGTTGCAGGTTCCAAACCAGTTGCAGGTTCTAAACCAGGTGCAGGTGAAAAATCAGTTGCAGTTGAAAAACCAGGTGCAGGTGAAAAATCAATCGCAGTTGAAAAACCAGCTGCAGCTGAAAAATCAGTTGCTGGTGAAAAATCAGGTGCCGGTGAAAAATCATTTGCAGTTGAGCAACCAGGTGCAGGAGGAAAACCAACTGTTGAGCAACCAAGTTCTGTTGCAAGTGGAAAGAGGAAGAATAGAATGTGCTACGGGTGTCGTCAAAAAGGACATAATCTCTCAGAATGCCCAAACCCACAAATAGCTGCTTCTACTGCACTTTGA

Protein sequence

>MS.gene44404.t1

KNDDSVANGVVVVKDAKKSMKKEKQKKKNQLKKKRKKNKTAEENGKAKIAEENDSNHQEEMPQSTVLANTTTTTSQENGDVATKVYVGGIPYYSSEDDIHSYFEGCGTITEINCMTFPDTGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPCKATQATRFTPEMKEGYNRIYVGSLSWEITEEELRKFFSNCNVKAIRLGMDKETGEFRGYAHVDFSDSQSLKTALALDQSVLFGRPVRISCAVPLNKKPVAGSKPVAGSKPGAGEKSVAVEKPGAGEKSIAVEKPAAAEKSVAGEKSGAGEKSFAVEQPGAGGKPTVEQPSSVASGKRKNRMCYGCRQKGHNLSECPNPQIAASTAL