AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44427


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44427.t1 MTR_4g097790 88.413 794 56 5 1 769 1 783 0.0 1136
MS.gene44427.t1 MTR_5g005430 44.156 77 31 3 1 68 1 74 2.71e-14 77.0
MS.gene44427.t1 MTR_1g105890 35.025 197 97 8 1 185 1 178 4.01e-14 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44427.t1 AT4G33740 51.429 70 25 2 8 68 7 76 1.84e-17 86.7
MS.gene44427.t1 AT4G33740 51.429 70 25 2 8 68 7 76 1.84e-17 86.7
MS.gene44427.t1 AT4G33740 51.429 70 25 2 8 68 7 76 1.84e-17 86.7
MS.gene44427.t1 AT4G33740 51.429 70 25 2 8 68 7 76 1.84e-17 86.7
MS.gene44427.t1 AT4G33740 51.429 70 25 2 8 68 7 76 1.84e-17 86.7

Find 131 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGTTCTTTGAGTCATTC+TGG 0.163643 8.1:+24772898 None:intergenic
TTTCCTCCACATGAGGTTTA+AGG 0.231421 8.1:+24774689 None:intergenic
GTTTGGTTAGTTTATCAAAT+TGG 0.237146 8.1:-24774790 MS.gene44427:CDS
GCATGACGAGCAAACAAAAT+TGG 0.258368 8.1:-24774605 MS.gene44427:CDS
TAAAGAATCTCGTGTAGATT+TGG 0.278934 8.1:-24772655 MS.gene44427:CDS
GAGGAGAATTAGGCATGTTT+AGG 0.292908 8.1:-24774897 None:intergenic
GGCAATGAAGTTGTTAAGTT+AGG 0.297885 8.1:-24774721 MS.gene44427:CDS
AGAAGAACAATTTGACAAAA+AGG 0.307480 8.1:-24773708 MS.gene44427:CDS
GATTTAGAATCTTCATTGTT+TGG 0.315496 8.1:+24773374 None:intergenic
AGAGAATGAGGAAATCAAAA+AGG 0.319492 8.1:-24774410 MS.gene44427:CDS
CCTTCGCATCACTACCATTC+TGG 0.322961 8.1:+24773960 None:intergenic
CTCTACACTTTCCCTCTCCT+TGG 0.335719 8.1:+24774435 None:intergenic
ACAAAATTGGATGATGTTAA+TGG 0.336252 8.1:-24774592 MS.gene44427:CDS
CCATTCTGCGATGATGTATT+CGG 0.342453 8.1:+24773479 None:intergenic
CTTAGATCTTTGACTCCTCC+TGG 0.358867 8.1:+24774867 None:intergenic
AGAAGGGCATGATAAGATTC+AGG 0.360712 8.1:-24773861 MS.gene44427:CDS
CTCTCCTCCTTCTGTTCCAT+TGG 0.361243 8.1:+24773886 None:intergenic
TGAATCAGTGGAGTCGAAAA+AGG 0.361299 8.1:-24772766 MS.gene44427:CDS
GAAAACCCGGAAAAGAATTC+TGG 0.364276 8.1:-24773251 MS.gene44427:CDS
CCCGAGTTTGCATTGTCATT+CGG 0.373470 8.1:+24773074 None:intergenic
AATGAAGAGAACAAAGAAAC+TGG 0.374256 8.1:-24774334 MS.gene44427:CDS
GAAGTAGAGGACACAGAAAC+TGG 0.375669 8.1:-24774388 MS.gene44427:CDS
AAAGAATCTCGTGTAGATTT+GGG 0.384407 8.1:-24772654 MS.gene44427:CDS
TTCTTGTTGGTGTTTGTGTT+TGG 0.390640 8.1:-24774807 MS.gene44427:CDS
CTTGTTTACTATCTTGCTCA+TGG 0.391649 8.1:+24773921 None:intergenic
ACTTCCTTGATCATTCGAAT+TGG 0.392875 8.1:+24772704 None:intergenic
TTCATCTGATAATCAGGTTC+AGG 0.393266 8.1:-24773831 MS.gene44427:CDS
CCTTCTCACTCTCACTTCCT+TGG 0.393945 8.1:+24773609 None:intergenic
TGGCTTTCTCCGTTGCTGTC+TGG 0.398238 8.1:+24772624 None:intergenic
CTACAAATATGTGTTCTTGT+TGG 0.398603 8.1:-24774820 MS.gene44427:CDS
AGAGACTTCATCTGATAATC+AGG 0.414886 8.1:-24773837 MS.gene44427:CDS
GTCATTAGCACTTTCATCAC+TGG 0.424247 8.1:+24773037 None:intergenic
ATCAGATGTTGCTGGAGATC+AGG 0.424407 8.1:-24773354 MS.gene44427:CDS
AGAAGTGTTTCCGCTGTCAT+TGG 0.432416 8.1:+24772869 None:intergenic
CGGAGTTTGTACATCATCCT+TGG 0.439676 8.1:+24773499 None:intergenic
GCTAGGGAGGAAAATTATTC+CGG 0.440944 8.1:-24773788 MS.gene44427:CDS
AAGATCTAAGAACGGCTTCA+AGG 0.444974 8.1:-24774854 MS.gene44427:CDS
TTCTGAGCATAAAGAGGATT+CGG 0.445078 8.1:-24774557 MS.gene44427:CDS
GCAATGAAGTTGTTAAGTTA+GGG 0.446418 8.1:-24774720 MS.gene44427:CDS
TCCTTGGCTGTTTCGTGTGA+CGG 0.462243 8.1:+24773625 None:intergenic
CAAGATGGCAATACAAATCA+TGG 0.470308 8.1:-24773296 MS.gene44427:CDS
GAGAATGAAAAGATCAAAGA+TGG 0.475291 8.1:-24774127 MS.gene44427:CDS
GATTCTAAATCAGATGTTGC+TGG 0.478943 8.1:-24773362 MS.gene44427:CDS
GAGAATGAAGAGAACAAAGA+TGG 0.485331 8.1:-24774205 MS.gene44427:CDS
GAGAATGAAGAGAACAAAGA+TGG 0.485331 8.1:-24774244 MS.gene44427:CDS
AAGTGAGAGTGAGAAGGATC+AGG 0.486082 8.1:-24773603 MS.gene44427:CDS
ATCTTTGTTGTCAAATGTGT+TGG 0.490461 8.1:+24773196 None:intergenic
ACCGAATGACAATGCAAACT+CGG 0.494622 8.1:-24773075 MS.gene44427:CDS
CCGAATACATCATCGCAGAA+TGG 0.499005 8.1:-24773479 MS.gene44427:CDS
GACGAATCTGCTCACAAAGA+TGG 0.500432 8.1:-24772738 MS.gene44427:CDS
TTAGATCTTTGACTCCTCCT+GGG 0.501240 8.1:+24774868 None:intergenic
CGAATACATCATCGCAGAAT+GGG 0.506493 8.1:-24773478 MS.gene44427:CDS
AAGTGTAGAGAAAGAGAATG+AGG 0.515167 8.1:-24774422 MS.gene44427:CDS
CAGAAGGAGGAGAGAGAGAA+GGG 0.516062 8.1:-24773877 MS.gene44427:CDS
TGAGACAAAGAGTAACGATA+AGG 0.520367 8.1:-24773999 MS.gene44427:CDS
AGATGCAAACTCAAAGAAAG+AGG 0.524658 8.1:-24773420 MS.gene44427:CDS
AATTCCAATTCGAATGATCA+AGG 0.525233 8.1:-24772708 MS.gene44427:CDS
TTCTGAGGAAGATGTAGTAG+TGG 0.531925 8.1:+24773322 None:intergenic
TAATGCCTCCAGTGCTGTAG+TGG 0.536214 8.1:-24773762 MS.gene44427:CDS
ATGAAGTTGTTAAGTTAGGG+AGG 0.537095 8.1:-24774717 MS.gene44427:CDS
TTTGTTATCCACTACAGCAC+TGG 0.540846 8.1:+24773754 None:intergenic
AGCACTGGAGGCATTATCTC+CGG 0.541329 8.1:+24773769 None:intergenic
AGTTGTTAAGTTAGGGAGGA+AGG 0.542263 8.1:-24774713 MS.gene44427:CDS
TCAAAATGCTAAGACTGACT+TGG 0.542530 8.1:-24774509 MS.gene44427:CDS
CATGAGCAAGATAGTAAACA+AGG 0.550003 8.1:-24773920 MS.gene44427:CDS
CAAGGGACGGCGGAGACCAA+TGG 0.550548 8.1:-24773902 MS.gene44427:CDS
TCATCTGAAAACAGTGCAGA+GGG 0.551686 8.1:-24772987 MS.gene44427:CDS
TGAGGAAGATGTAGTAGTGG+TGG 0.552598 8.1:+24773325 None:intergenic
GTGAAAAGAACAATGAGGCT+AGG 0.556837 8.1:-24773805 MS.gene44427:CDS
GACAGAAAATGATTCACAGA+AGG 0.558166 8.1:-24773576 MS.gene44427:CDS
ACAGAAAACAACAGTGCAGA+GGG 0.563947 8.1:-24772954 MS.gene44427:CDS
GAAAAGAATTCTGGTCAAGA+AGG 0.566269 8.1:-24773242 MS.gene44427:CDS
TACAAATCATGGTGAATACA+AGG 0.567359 8.1:-24773285 MS.gene44427:CDS
GCATGTTTAGGTTATCTCCC+AGG 0.568543 8.1:-24774885 MS.gene44427:CDS
ACAGAAGGAGGAGAGAGAGA+AGG 0.571089 8.1:-24773878 MS.gene44427:CDS
GCGGAGACCAATGGAACAGA+AGG 0.571738 8.1:-24773893 MS.gene44427:CDS
TTCTGATACATCAGTCACTC+AGG 0.572160 8.1:-24772682 MS.gene44427:CDS
CAGAAGAAACATCATTGTGA+TGG 0.579215 8.1:+24772604 None:intergenic
CCAGAATGGTAGTGATGCGA+AGG 0.580966 8.1:-24773960 MS.gene44427:CDS
TGAAAAGAACAATGAGGCTA+GGG 0.583974 8.1:-24773804 MS.gene44427:CDS
GAGACCAATGGAACAGAAGG+AGG 0.585754 8.1:-24773890 MS.gene44427:CDS
TGACAACAAAGATTCTAGCC+AGG 0.586204 8.1:-24773018 MS.gene44427:CDS
AGAATTACTTTCTGCAATCG+AGG 0.586271 8.1:+24773106 None:intergenic
AGATAATTCTGAGCATAAAG+AGG 0.586342 8.1:-24774563 MS.gene44427:CDS
ATTGCCATCTTGAGTTTCTG+AGG 0.586725 8.1:+24773307 None:intergenic
GTTCTGATTCTCATTCACAT+TGG 0.587926 8.1:+24772839 None:intergenic
GAATGACAATGCAGAGACCA+AGG 0.588611 8.1:-24774452 MS.gene44427:CDS
ACAGAAGTTTCCTCCACATG+AGG 0.598636 8.1:+24774682 None:intergenic
TACTACCTCTGATACCTCAT+CGG 0.598827 8.1:-24773147 MS.gene44427:CDS
ACCAAGACTAGTGAAAATGA+AGG 0.600742 8.1:-24772801 MS.gene44427:CDS
CCAAGGAAGTGAGAGTGAGA+AGG 0.602518 8.1:-24773609 MS.gene44427:CDS
AATGAAGAAAGCAACCAGAA+TGG 0.603174 8.1:-24773974 MS.gene44427:CDS
GAAGGACCTTAAACCTCATG+TGG 0.607015 8.1:-24774695 MS.gene44427:CDS
GGAACTTTGCCAGACAGCAA+CGG 0.607653 8.1:-24772633 MS.gene44427:CDS
AATGCTAAGACTGACTTGGA+AGG 0.608284 8.1:-24774505 MS.gene44427:CDS
GTTATCCACTACAGCACTGG+AGG 0.610249 8.1:+24773757 None:intergenic
TTGTTCCGATGAGGTATCAG+AGG 0.610717 8.1:+24773142 None:intergenic
ACAGAAAATGATTCACAGAA+GGG 0.613293 8.1:-24773575 MS.gene44427:CDS
CAAGAAGGAACACAAGAAAG+TGG 0.614187 8.1:-24773227 MS.gene44427:CDS
TCTTCCTCAGAAACTCAAGA+TGG 0.618250 8.1:-24773311 MS.gene44427:CDS
CCGAATGACAATGCAAACTC+GGG 0.619630 8.1:-24773074 MS.gene44427:CDS
CACAGAAAACAACAGTGCAG+AGG 0.623521 8.1:-24772955 MS.gene44427:CDS
TGATGCTCAAAATGAATCAG+TGG 0.624955 8.1:-24772778 MS.gene44427:CDS
ACCGTCACACGAAACAGCCA+AGG 0.625338 8.1:-24773626 MS.gene44427:CDS
ATTGGATGATGTTAATGGTG+TGG 0.625827 8.1:-24774587 MS.gene44427:CDS
GCAAGATAGTAAACAAGGGA+CGG 0.627652 8.1:-24773915 MS.gene44427:CDS
CAATGCAGAGACCAAGGAGA+GGG 0.630030 8.1:-24774446 MS.gene44427:CDS
TTCATCTGAAAACAGTGCAG+AGG 0.631596 8.1:-24772988 MS.gene44427:CDS
GGACACCACTAATGAAAACC+CGG 0.633456 8.1:-24773264 MS.gene44427:CDS
AAAGAACAATGAGGCTAGGG+AGG 0.643597 8.1:-24773801 MS.gene44427:CDS
AGAAACTGGAGAAAGTAATG+AGG 0.649473 8.1:-24774374 MS.gene44427:CDS
TCTGATAATCAGGTTCAGGA+TGG 0.650784 8.1:-24773827 MS.gene44427:CDS
TGTTATAGATGCAAGACACA+AGG 0.650888 8.1:-24774662 MS.gene44427:CDS
TCGTGTGACGGTAGAAACAG+TGG 0.651794 8.1:+24773637 None:intergenic
TTTCAGATGAAGTAGTGACC+TGG 0.653028 8.1:+24773000 None:intergenic
TGCAAGACACAAGGAAGACG+AGG 0.658957 8.1:-24774653 MS.gene44427:CDS
GGACCTTAAACCTCATGTGG+AGG 0.664100 8.1:-24774692 MS.gene44427:CDS
AGGAGTCAAAGATCTAAGAA+CGG 0.671099 8.1:-24774862 MS.gene44427:CDS
ACAATGCAGAGACCAAGGAG+AGG 0.673196 8.1:-24774447 MS.gene44427:CDS
TAGTGATGCGAAGGATCAAG+CGG 0.673292 8.1:-24773951 MS.gene44427:CDS
AGATAGTAAACAAGGGACGG+CGG 0.680895 8.1:-24773912 MS.gene44427:CDS
AAGACACAAGGAAGACGAGG+AGG 0.683212 8.1:-24774650 MS.gene44427:CDS
GGATGGTGAAAAGAACAATG+AGG 0.685838 8.1:-24773810 MS.gene44427:CDS
TGATGCGAAGGATCAAGCGG+AGG 0.696334 8.1:-24773948 MS.gene44427:CDS
AATGAAAATACCAATGACAG+CGG 0.700561 8.1:-24772879 MS.gene44427:CDS
TGTTTAGGTTATCTCCCAGG+AGG 0.705901 8.1:-24774882 MS.gene44427:CDS
AGAAACCGGAGAAATTACAG+AGG 0.706376 8.1:-24774053 MS.gene44427:CDS
CAAAGATGCTACTAGCGACG+AGG 0.712855 8.1:-24773180 MS.gene44427:CDS
ATGAGCAAGATAGTAAACAA+GGG 0.719871 8.1:-24773919 MS.gene44427:CDS
AGAGCAGAATAACATCACCA+AGG 0.736602 8.1:-24773516 MS.gene44427:CDS
AGAAACTGGAGAAAGTACCG+AGG 0.756900 8.1:-24774320 MS.gene44427:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AATGAAGAGAAGAAAAATGA+AGG - chr8.1:24773394-24773413 MS.gene44427:CDS 25.0%
! ACAAAATTGGATGATGTTAA+TGG - chr8.1:24772887-24772906 MS.gene44427:CDS 25.0%
! AGAAGAACAATTTGACAAAA+AGG - chr8.1:24773771-24773790 MS.gene44427:CDS 25.0%
! ATGAAGAGAAGAAAAATGAA+GGG - chr8.1:24773395-24773414 MS.gene44427:CDS 25.0%
!! GATTTAGAATCTTCATTGTT+TGG + chr8.1:24774108-24774127 None:intergenic 25.0%
!!! GTTTGGTTAGTTTATCAAAT+TGG - chr8.1:24772689-24772708 MS.gene44427:CDS 25.0%
AAAGAATCTCGTGTAGATTT+GGG - chr8.1:24774825-24774844 MS.gene44427:CDS 30.0%
AATGAAAATACCAATGACAG+CGG - chr8.1:24774600-24774619 MS.gene44427:CDS 30.0%
AATGAAGAGAACAAAGAAAC+TGG - chr8.1:24773145-24773164 MS.gene44427:CDS 30.0%
AATTCCAATTCGAATGATCA+AGG - chr8.1:24774771-24774790 MS.gene44427:CDS 30.0%
ACAGAAAATGATTCACAGAA+GGG - chr8.1:24773904-24773923 MS.gene44427:CDS 30.0%
AGAGAATGAGGAAATCAAAA+AGG - chr8.1:24773069-24773088 MS.gene44427:CDS 30.0%
AGATAATTCTGAGCATAAAG+AGG - chr8.1:24772916-24772935 MS.gene44427:CDS 30.0%
ATGAGCAAGATAGTAAACAA+GGG - chr8.1:24773560-24773579 MS.gene44427:CDS 30.0%
CTACAAATATGTGTTCTTGT+TGG - chr8.1:24772659-24772678 MS.gene44427:CDS 30.0%
GAGAATGAAAAGATCAAAGA+TGG - chr8.1:24773352-24773371 MS.gene44427:CDS 30.0%
GCAATGAAGTTGTTAAGTTA+GGG - chr8.1:24772759-24772778 MS.gene44427:CDS 30.0%
TAAAGAATCTCGTGTAGATT+TGG - chr8.1:24774824-24774843 MS.gene44427:CDS 30.0%
TACAAATCATGGTGAATACA+AGG - chr8.1:24774194-24774213 MS.gene44427:CDS 30.0%
TGAAGAGAAGAAAAATGAAG+GGG - chr8.1:24773396-24773415 MS.gene44427:CDS 30.0%
! ATCTTTGTTGTCAAATGTGT+TGG + chr8.1:24774286-24774305 None:intergenic 30.0%
AAGTGTAGAGAAAGAGAATG+AGG - chr8.1:24773057-24773076 MS.gene44427:CDS 35.0%
AATGAAGAAAGCAACCAGAA+TGG - chr8.1:24773505-24773524 MS.gene44427:CDS 35.0%
ACCAAGACTAGTGAAAATGA+AGG - chr8.1:24774678-24774697 MS.gene44427:CDS 35.0%
ACTTCCTTGATCATTCGAAT+TGG + chr8.1:24774778-24774797 None:intergenic 35.0%
AGAAACTGGAGAAAGTAATG+AGG - chr8.1:24773105-24773124 MS.gene44427:CDS 35.0%
AGAATTACTTTCTGCAATCG+AGG + chr8.1:24774376-24774395 None:intergenic 35.0%
AGAGACTTCATCTGATAATC+AGG - chr8.1:24773642-24773661 MS.gene44427:CDS 35.0%
AGATGCAAACTCAAAGAAAG+AGG - chr8.1:24774059-24774078 MS.gene44427:CDS 35.0%
AGGAGTCAAAGATCTAAGAA+CGG - chr8.1:24772617-24772636 MS.gene44427:CDS 35.0%
ATGAAGTTGTTAAGTTAGGG+AGG - chr8.1:24772762-24772781 MS.gene44427:CDS 35.0%
ATTGGATGATGTTAATGGTG+TGG - chr8.1:24772892-24772911 MS.gene44427:CDS 35.0%
CAAGATGGCAATACAAATCA+TGG - chr8.1:24774183-24774202 MS.gene44427:CDS 35.0%
CAGAAGAAACATCATTGTGA+TGG + chr8.1:24774878-24774897 None:intergenic 35.0%
CATGAGCAAGATAGTAAACA+AGG - chr8.1:24773559-24773578 MS.gene44427:CDS 35.0%
CATTGTTCTTTGAGTCATTC+TGG + chr8.1:24774584-24774603 None:intergenic 35.0%
CTTGTTTACTATCTTGCTCA+TGG + chr8.1:24773561-24773580 None:intergenic 35.0%
GAAAAGAATTCTGGTCAAGA+AGG - chr8.1:24774237-24774256 MS.gene44427:CDS 35.0%
GAAGAGAAGAAAAATGAAGG+GGG - chr8.1:24773397-24773416 MS.gene44427:CDS 35.0%
GACAGAAAATGATTCACAGA+AGG - chr8.1:24773903-24773922 MS.gene44427:CDS 35.0%
GAGAATGAAGAGAACAAAGA+TGG - chr8.1:24773196-24773215 MS.gene44427:CDS 35.0%
GATTCTAAATCAGATGTTGC+TGG - chr8.1:24774117-24774136 MS.gene44427:CDS 35.0%
GGAAATCAAAAAGGAAGTAG+AGG - chr8.1:24773078-24773097 MS.gene44427:CDS 35.0%
GGCAATGAAGTTGTTAAGTT+AGG - chr8.1:24772758-24772777 MS.gene44427:CDS 35.0%
GTTCTGATTCTCATTCACAT+TGG + chr8.1:24774643-24774662 None:intergenic 35.0%
TCAAAATGCTAAGACTGACT+TGG - chr8.1:24772970-24772989 MS.gene44427:CDS 35.0%
TGAAAAGAACAATGAGGCTA+GGG - chr8.1:24773675-24773694 MS.gene44427:CDS 35.0%
TGAGACAAAGAGTAACGATA+AGG - chr8.1:24773480-24773499 MS.gene44427:CDS 35.0%
TGATGCTCAAAATGAATCAG+TGG - chr8.1:24774701-24774720 MS.gene44427:CDS 35.0%
TGTTATAGATGCAAGACACA+AGG - chr8.1:24772817-24772836 MS.gene44427:CDS 35.0%
TTCATCTGATAATCAGGTTC+AGG - chr8.1:24773648-24773667 MS.gene44427:CDS 35.0%
TTCTGAGCATAAAGAGGATT+CGG - chr8.1:24772922-24772941 MS.gene44427:CDS 35.0%
! ATCTTTCTTTTGTTCCGATG+AGG + chr8.1:24774349-24774368 None:intergenic 35.0%
! CTTTTCCTCTGTAATTTCTC+CGG + chr8.1:24773434-24773453 None:intergenic 35.0%
! TCTTGACCAGAATTCTTTTC+CGG + chr8.1:24774237-24774256 None:intergenic 35.0%
! TTCTTGTTGGTGTTTGTGTT+TGG - chr8.1:24772672-24772691 MS.gene44427:CDS 35.0%
!! ACCTTCATTTTCACTAGTCT+TGG + chr8.1:24774682-24774701 None:intergenic 35.0%
AAGATCTAAGAACGGCTTCA+AGG - chr8.1:24772625-24772644 MS.gene44427:CDS 40.0%
ACAGAAAACAACAGTGCAGA+GGG - chr8.1:24774525-24774544 MS.gene44427:CDS 40.0%
ACCGAATGACAATGCAAACT+CGG - chr8.1:24774404-24774423 MS.gene44427:CDS 40.0%
AGAAACCGGAGAAATTACAG+AGG - chr8.1:24773426-24773445 MS.gene44427:CDS 40.0%
AGAGCAGAATAACATCACCA+AGG - chr8.1:24773963-24773982 MS.gene44427:CDS 40.0%
AGTTGTTAAGTTAGGGAGGA+AGG - chr8.1:24772766-24772785 MS.gene44427:CDS 40.0%
ATTGCCATCTTGAGTTTCTG+AGG + chr8.1:24774175-24774194 None:intergenic 40.0%
CAAGAAGGAACACAAGAAAG+TGG - chr8.1:24774252-24774271 MS.gene44427:CDS 40.0%
CCATTCTGCGATGATGTATT+CGG + chr8.1:24774003-24774022 None:intergenic 40.0%
CGAATACATCATCGCAGAAT+GGG - chr8.1:24774001-24774020 MS.gene44427:CDS 40.0%
GAAAACCCGGAAAAGAATTC+TGG - chr8.1:24774228-24774247 MS.gene44427:CDS 40.0%
GCAAGATAGTAAACAAGGGA+CGG - chr8.1:24773564-24773583 MS.gene44427:CDS 40.0%
GCATGACGAGCAAACAAAAT+TGG - chr8.1:24772874-24772893 MS.gene44427:CDS 40.0%
GCTAGGGAGGAAAATTATTC+CGG - chr8.1:24773691-24773710 MS.gene44427:CDS 40.0%
GGATGGTGAAAAGAACAATG+AGG - chr8.1:24773669-24773688 MS.gene44427:CDS 40.0%
GTCATTAGCACTTTCATCAC+TGG + chr8.1:24774445-24774464 None:intergenic 40.0%
GTGAAAAGAACAATGAGGCT+AGG - chr8.1:24773674-24773693 MS.gene44427:CDS 40.0%
TACTACCTCTGATACCTCAT+CGG - chr8.1:24774332-24774351 MS.gene44427:CDS 40.0%
TCATCTGAAAACAGTGCAGA+GGG - chr8.1:24774492-24774511 MS.gene44427:CDS 40.0%
TCTGATAATCAGGTTCAGGA+TGG - chr8.1:24773652-24773671 MS.gene44427:CDS 40.0%
TCTTCCTCAGAAACTCAAGA+TGG - chr8.1:24774168-24774187 MS.gene44427:CDS 40.0%
TGAATCAGTGGAGTCGAAAA+AGG - chr8.1:24774713-24774732 MS.gene44427:CDS 40.0%
TGACAACAAAGATTCTAGCC+AGG - chr8.1:24774461-24774480 MS.gene44427:CDS 40.0%
TTAGATCTTTGACTCCTCCT+GGG + chr8.1:24772614-24772633 None:intergenic 40.0%
TTCATCTGAAAACAGTGCAG+AGG - chr8.1:24774491-24774510 MS.gene44427:CDS 40.0%
TTCTGATACATCAGTCACTC+AGG - chr8.1:24774797-24774816 MS.gene44427:CDS 40.0%
TTTCAGATGAAGTAGTGACC+TGG + chr8.1:24774482-24774501 None:intergenic 40.0%
TTTCCTCCACATGAGGTTTA+AGG + chr8.1:24772793-24772812 None:intergenic 40.0%
! AGAAGGGCATGATAAGATTC+AGG - chr8.1:24773618-24773637 MS.gene44427:CDS 40.0%
! CTCTAGATGACTCTTTTCCT+CGG + chr8.1:24773179-24773198 None:intergenic 40.0%
! CTTGACCAGAATTCTTTTCC+GGG + chr8.1:24774236-24774255 None:intergenic 40.0%
! CTTTTCCGGGTTTTCATTAG+TGG + chr8.1:24774223-24774242 None:intergenic 40.0%
! TTCTGAGGAAGATGTAGTAG+TGG + chr8.1:24774160-24774179 None:intergenic 40.0%
! TTTGTTATCCACTACAGCAC+TGG + chr8.1:24773728-24773747 None:intergenic 40.0%
!! AATGCTAAGACTGACTTGGA+AGG - chr8.1:24772974-24772993 MS.gene44427:CDS 40.0%
AAAGAACAATGAGGCTAGGG+AGG - chr8.1:24773678-24773697 MS.gene44427:CDS 45.0%
AAGTGAGAGTGAGAAGGATC+AGG - chr8.1:24773876-24773895 MS.gene44427:CDS 45.0%
ACAGAAGTTTCCTCCACATG+AGG + chr8.1:24772800-24772819 None:intergenic 45.0%
AGATAGTAAACAAGGGACGG+CGG - chr8.1:24773567-24773586 MS.gene44427:CDS 45.0%
ATCAGATGTTGCTGGAGATC+AGG - chr8.1:24774125-24774144 MS.gene44427:CDS 45.0%
CACAGAAAACAACAGTGCAG+AGG - chr8.1:24774524-24774543 MS.gene44427:CDS 45.0%
CCCGAGTTTGCATTGTCATT+CGG + chr8.1:24774408-24774427 None:intergenic 45.0%
CCGAATACATCATCGCAGAA+TGG - chr8.1:24774000-24774019 MS.gene44427:CDS 45.0%
CCGAATGACAATGCAAACTC+GGG - chr8.1:24774405-24774424 MS.gene44427:CDS 45.0%
CGGAGTTTGTACATCATCCT+TGG + chr8.1:24773983-24774002 None:intergenic 45.0%
CTTAGATCTTTGACTCCTCC+TGG + chr8.1:24772615-24772634 None:intergenic 45.0%
GAAGGACCTTAAACCTCATG+TGG - chr8.1:24772784-24772803 MS.gene44427:CDS 45.0%
GAAGTAGAGGACACAGAAAC+TGG - chr8.1:24773091-24773110 MS.gene44427:CDS 45.0%
GAATGACAATGCAGAGACCA+AGG - chr8.1:24773027-24773046 MS.gene44427:CDS 45.0%
GACGAATCTGCTCACAAAGA+TGG - chr8.1:24774741-24774760 MS.gene44427:CDS 45.0%
GGACACCACTAATGAAAACC+CGG - chr8.1:24774215-24774234 MS.gene44427:CDS 45.0%
TAGTGATGCGAAGGATCAAG+CGG - chr8.1:24773528-24773547 MS.gene44427:CDS 45.0%
TATGGAGCGAGCACAAAAAC+TGG - chr8.1:24772737-24772756 MS.gene44427:CDS 45.0%
TGAGGAAGATGTAGTAGTGG+TGG + chr8.1:24774157-24774176 None:intergenic 45.0%
! TGTTTAGGTTATCTCCCAGG+AGG - chr8.1:24772597-24772616 MS.gene44427:CDS 45.0%
! TTGTTCCGATGAGGTATCAG+AGG + chr8.1:24774340-24774359 None:intergenic 45.0%
!! AGAAACTGGAGAAAGTACCG+AGG - chr8.1:24773159-24773178 MS.gene44427:CDS 45.0%
!! AGAAGTGTTTCCGCTGTCAT+TGG + chr8.1:24774613-24774632 None:intergenic 45.0%
AAGACACAAGGAAGACGAGG+AGG - chr8.1:24772829-24772848 MS.gene44427:CDS 50.0%
ACAATGCAGAGACCAAGGAG+AGG - chr8.1:24773032-24773051 MS.gene44427:CDS 50.0%
ACAGAAGGAGGAGAGAGAGA+AGG - chr8.1:24773601-24773620 MS.gene44427:CDS 50.0%
CAAAGATGCTACTAGCGACG+AGG - chr8.1:24774299-24774318 MS.gene44427:CDS 50.0%
CAATGCAGAGACCAAGGAGA+GGG - chr8.1:24773033-24773052 MS.gene44427:CDS 50.0%
CAGAAGGAGGAGAGAGAGAA+GGG - chr8.1:24773602-24773621 MS.gene44427:CDS 50.0%
CCAAGGAAGTGAGAGTGAGA+AGG - chr8.1:24773870-24773889 MS.gene44427:CDS 50.0%
CCTTCGCATCACTACCATTC+TGG + chr8.1:24773522-24773541 None:intergenic 50.0%
CCTTCTCACTCTCACTTCCT+TGG + chr8.1:24773873-24773892 None:intergenic 50.0%
CTCTACACTTTCCCTCTCCT+TGG + chr8.1:24773047-24773066 None:intergenic 50.0%
CTCTCCTCCTTCTGTTCCAT+TGG + chr8.1:24773596-24773615 None:intergenic 50.0%
GAAGGGGGAGAGAAAGAAAC+CGG - chr8.1:24773412-24773431 MS.gene44427:CDS 50.0%
GAGACCAATGGAACAGAAGG+AGG - chr8.1:24773589-24773608 MS.gene44427:CDS 50.0%
GGAACTTTGCCAGACAGCAA+CGG - chr8.1:24774846-24774865 MS.gene44427:CDS 50.0%
GGACCTTAAACCTCATGTGG+AGG - chr8.1:24772787-24772806 MS.gene44427:CDS 50.0%
TAATGCCTCCAGTGCTGTAG+TGG - chr8.1:24773717-24773736 MS.gene44427:CDS 50.0%
TCGTGTGACGGTAGAAACAG+TGG + chr8.1:24773845-24773864 None:intergenic 50.0%
TGCAAGACACAAGGAAGACG+AGG - chr8.1:24772826-24772845 MS.gene44427:CDS 50.0%
! CCAGAATGGTAGTGATGCGA+AGG - chr8.1:24773519-24773538 MS.gene44427:CDS 50.0%
! GTTATCCACTACAGCACTGG+AGG + chr8.1:24773725-24773744 None:intergenic 50.0%
! TCCTTGGCTGTTTCGTGTGA+CGG + chr8.1:24773857-24773876 None:intergenic 50.0%
!! AGCACTGGAGGCATTATCTC+CGG + chr8.1:24773713-24773732 None:intergenic 50.0%
!! CGCGAGCAAAAAGCGTCTTA+TGG - chr8.1:24772719-24772738 MS.gene44427:CDS 50.0%
ACCGTCACACGAAACAGCCA+AGG - chr8.1:24773853-24773872 MS.gene44427:CDS 55.0%
GCGGAGACCAATGGAACAGA+AGG - chr8.1:24773586-24773605 MS.gene44427:CDS 55.0%
TGATGCGAAGGATCAAGCGG+AGG - chr8.1:24773531-24773550 MS.gene44427:CDS 55.0%
TGGCTTTCTCCGTTGCTGTC+TGG + chr8.1:24774858-24774877 None:intergenic 55.0%
CAAGGGACGGCGGAGACCAA+TGG - chr8.1:24773577-24773596 MS.gene44427:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 24772596 24774905 24772596 ID=MS.gene44427
chr8.1 mRNA 24772596 24774905 24772596 ID=MS.gene44427.t1;Parent=MS.gene44427
chr8.1 exon 24772596 24774905 24772596 ID=MS.gene44427.t1.exon1;Parent=MS.gene44427.t1
chr8.1 CDS 24772596 24774905 24772596 ID=cds.MS.gene44427.t1;Parent=MS.gene44427.t1
Gene Sequence

>MS.gene44427

ATGTTTAGGTTATCTCCCAGGAGGAGTCAAAGATCTAAGAACGGCTTCAAGGTGAAGCATGCTCTACAAATATGTGTTCTTGTTGGTGTTTGTGTTTGGTTAGTTTATCAAATTGGACATTCACGCGAGCAAAAAGCGTCTTATGGAGCGAGCACAAAAACTGGCAATGAAGTTGTTAAGTTAGGGAGGAAGGACCTTAAACCTCATGTGGAGGAAACTTCTGTTATAGATGCAAGACACAAGGAAGACGAGGAGGAAGCAGATGAACTAGACAATAAGCATGACGAGCAAACAAAATTGGATGATGTTAATGGTGTGGAAGATAATTCTGAGCATAAAGAGGATTCGGTAGAGCAAGAGAGTGAAGAGAGTTCTCAAAATGCTAAGACTGACTTGGAAGGTGAACAGCATACAGAGAAAGTTGATGAAGAGAATGACAATGCAGAGACCAAGGAGAGGGAAAGTGTAGAGAAAGAGAATGAGGAAATCAAAAAGGAAGTAGAGGACACAGAAACTGGAGAAAGTAATGAGGAAAAGAGTCATTTAGAAAATGAAGAGAACAAAGAAACTGGAGAAAGTACCGAGGAAAAGAGTCATCTAGAGAATGAAGAGAACAAAGATGAAGAAAAGAGTCAGCAAGAGAATGAAGAGAACAAAGATGGAGAAAAGATTCAGCAAGAGAATGAAGAGAACAAAGATGGAGAAAAGATTCAGCAAGAGAATGAAGAGAACAAAGATGAAGAAAAGAGTCAGCAAGAGAATGAAAAGATCAAAGATGGAGAAAAGATTCAGCAAGAGAATGAAGAGAAGAAAAATGAAGGGGGAGAGAAAGAAACCGGAGAAATTACAGAGGAAAAGAGTAAGCAAGAGAATGAAGAGACAAGTGAGACAAAGAGTAACGATAAGGAGAATGAAGAAAGCAACCAGAATGGTAGTGATGCGAAGGATCAAGCGGAGGAAAACCATGAGCAAGATAGTAAACAAGGGACGGCGGAGACCAATGGAACAGAAGGAGGAGAGAGAGAAGGGCATGATAAGATTCAGGAAGAGACTTCATCTGATAATCAGGTTCAGGATGGTGAAAAGAACAATGAGGCTAGGGAGGAAAATTATTCCGGAGATAATGCCTCCAGTGCTGTAGTGGATAACAAATCACAAGAAAGTTCTAACAAGACAGAAGAACAATTTGACAAAAAGGAAAAGAATGAGTTTGAGTCTCAGAAAAATAGTGATGAAACTACTGAATCCACTGTTTCTACCGTCACACGAAACAGCCAAGGAAGTGAGAGTGAGAAGGATCAGGCACAGACAGAAAATGATTCACAGAAGGGTTCTGCATCAGAGTCAGATGAACAGAAGCAAGAGCAAGAGCAGAATAACATCACCAAGGATGATGTACAAACTCCGAATACATCATCGCAGAATGGGAATGACACAGCTGAAAAACAGAATGAAAAATCTGAAGATGCAAACTCAAAGAAAGAGGACTCTAGCGCGCAAAATACAACGCCAAACAATGAAGATTCTAAATCAGATGTTGCTGGAGATCAGGCTGATTCCACCACTACTACATCTTCCTCAGAAACTCAAGATGGCAATACAAATCATGGTGAATACAAGGACACCACTAATGAAAACCCGGAAAAGAATTCTGGTCAAGAAGGAACACAAGAAAGTGGTTCATCATCCAACACATTTGACAACAAAGATGCTACTAGCGACGAGGTTAAACTAACTACTACCTCTGATACCTCATCGGAACAAAAGAAAGATGAATCCTCGATTGCAGAAAGTAATTCTGAATCTTCACCGAATGACAATGCAAACTCGGGTCAAAGCAACACAACCAGTGATGAAAGTGCTAATGACAACAAAGATTCTAGCCAGGTCACTACTTCATCTGAAAACAGTGCAGAGGGAAACTCAAACACAGAAAACAACAGTGCAGAGGGAAACTCAAACACAGAAAACAACAGTGACGCAAACCAGAATGACTCAAAGAACAATGAAAATACCAATGACAGCGGAAACACTTCTAATGATGCCAATGTGAATGAGAATCAGAACGAGAACGCTGCTCAGACCAAGACTAGTGAAAATGAAGGTGATGCTCAAAATGAATCAGTGGAGTCGAAAAAGGAGAATGACGAATCTGCTCACAAAGATGGAGATAACAATTCCAATTCGAATGATCAAGGAAGTTCTGATACATCAGTCACTCAGGATGATAAAGAATCTCGTGTAGATTTGGGAACTTTGCCAGACAGCAACGGAGAAAGCCATCACAATGATGTTTCTTCTGCAGAATGA

Protein sequence

>MS.gene44427.t1

MFRLSPRRSQRSKNGFKVKHALQICVLVGVCVWLVYQIGHSREQKASYGASTKTGNEVVKLGRKDLKPHVEETSVIDARHKEDEEEADELDNKHDEQTKLDDVNGVEDNSEHKEDSVEQESEESSQNAKTDLEGEQHTEKVDEENDNAETKERESVEKENEEIKKEVEDTETGESNEEKSHLENEENKETGESTEEKSHLENEENKDEEKSQQENEENKDGEKIQQENEENKDGEKIQQENEENKDEEKSQQENEKIKDGEKIQQENEEKKNEGGEKETGEITEEKSKQENEETSETKSNDKENEESNQNGSDAKDQAEENHEQDSKQGTAETNGTEGGEREGHDKIQEETSSDNQVQDGEKNNEAREENYSGDNASSAVVDNKSQESSNKTEEQFDKKEKNEFESQKNSDETTESTVSTVTRNSQGSESEKDQAQTENDSQKGSASESDEQKQEQEQNNITKDDVQTPNTSSQNGNDTAEKQNEKSEDANSKKEDSSAQNTTPNNEDSKSDVAGDQADSTTTTSSSETQDGNTNHGEYKDTTNENPEKNSGQEGTQESGSSSNTFDNKDATSDEVKLTTTSDTSSEQKKDESSIAESNSESSPNDNANSGQSNTTSDESANDNKDSSQVTTSSENSAEGNSNTENNSAEGNSNTENNSDANQNDSKNNENTNDSGNTSNDANVNENQNENAAQTKTSENEGDAQNESVESKKENDESAHKDGDNNSNSNDQGSSDTSVTQDDKESRVDLGTLPDSNGESHHNDVSSAE