Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44427.t1 | XP_003608579.1 | 98.9 | 91 | 1 | 0 | 1 | 91 | 1 | 91 | 3.50E-41 | 180.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44427.t1 | G7JFA7 | 98.9 | 91 | 1 | 0 | 1 | 91 | 1 | 91 | 2.5e-41 | 180.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene44427 | 0.894078 | 3.46E-75 | -1.69E-46 |
MS.gene049159 | MS.gene44427 | 0.822724 | 2.03E-53 | -1.69E-46 |
MS.gene049178 | MS.gene44427 | 0.821087 | 4.86E-53 | -1.69E-46 |
MS.gene049350 | MS.gene44427 | 0.82372 | 1.19E-53 | -1.69E-46 |
MS.gene049368 | MS.gene44427 | 0.830996 | 2.14E-55 | -1.69E-46 |
MS.gene049501 | MS.gene44427 | 0.819662 | 1.03E-52 | -1.69E-46 |
MS.gene049887 | MS.gene44427 | 0.826111 | 3.25E-54 | -1.69E-46 |
MS.gene050551 | MS.gene44427 | 0.842738 | 2.15E-58 | -1.69E-46 |
MS.gene050654 | MS.gene44427 | 0.818519 | 1.88E-52 | -1.69E-46 |
MS.gene050657 | MS.gene44427 | 0.835579 | 1.55E-56 | -1.69E-46 |
MS.gene050826 | MS.gene44427 | 0.804137 | 2.50E-49 | -1.69E-46 |
MS.gene051102 | MS.gene44427 | 0.834638 | 2.67E-56 | -1.69E-46 |
MS.gene051247 | MS.gene44427 | 0.803869 | 2.84E-49 | -1.69E-46 |
MS.gene051490 | MS.gene44427 | 0.803722 | 3.04E-49 | -1.69E-46 |
MS.gene051852 | MS.gene44427 | 0.819127 | 1.37E-52 | -1.69E-46 |
MS.gene052307 | MS.gene44427 | 0.835363 | 1.75E-56 | -1.69E-46 |
MS.gene052434 | MS.gene44427 | 0.814176 | 1.76E-51 | -1.69E-46 |
MS.gene052463 | MS.gene44427 | 0.83875 | 2.39E-57 | -1.69E-46 |
MS.gene052516 | MS.gene44427 | 0.836502 | 9.01E-57 | -1.69E-46 |
MS.gene052609 | MS.gene44427 | 0.844166 | 8.94E-59 | -1.69E-46 |
MS.gene052863 | MS.gene44427 | 0.827345 | 1.65E-54 | -1.69E-46 |
MS.gene052896 | MS.gene44427 | 0.810943 | 8.96E-51 | -1.69E-46 |
MS.gene053079 | MS.gene44427 | 0.810001 | 1.43E-50 | -1.69E-46 |
MS.gene053144 | MS.gene44427 | 0.832244 | 1.06E-55 | -1.69E-46 |
MS.gene053164 | MS.gene44427 | 0.818009 | 2.45E-52 | -1.69E-46 |
MS.gene05350 | MS.gene44427 | 0.814162 | 1.77E-51 | -1.69E-46 |
MS.gene053581 | MS.gene44427 | 0.819636 | 1.05E-52 | -1.69E-46 |
MS.gene054584 | MS.gene44427 | 0.816842 | 4.49E-52 | -1.69E-46 |
MS.gene05458 | MS.gene44427 | 0.816198 | 6.26E-52 | -1.69E-46 |
MS.gene05468 | MS.gene44427 | 0.801106 | 1.05E-48 | -1.69E-46 |
MS.gene055311 | MS.gene44427 | 0.807705 | 4.44E-50 | -1.69E-46 |
MS.gene055313 | MS.gene44427 | 0.82139 | 4.14E-53 | -1.69E-46 |
MS.gene055465 | MS.gene44427 | 0.854929 | 8.87E-62 | -1.69E-46 |
MS.gene055466 | MS.gene44427 | 0.850738 | 1.40E-60 | -1.69E-46 |
MS.gene055467 | MS.gene44427 | 0.804307 | 2.30E-49 | -1.69E-46 |
MS.gene055468 | MS.gene44427 | 0.843316 | 1.51E-58 | -1.69E-46 |
MS.gene055469 | MS.gene44427 | 0.838565 | 2.67E-57 | -1.69E-46 |
MS.gene055513 | MS.gene44427 | 0.868159 | 8.03E-66 | -1.69E-46 |
MS.gene055864 | MS.gene44427 | 0.845698 | 3.45E-59 | -1.69E-46 |
MS.gene055926 | MS.gene44427 | 0.814951 | 1.19E-51 | -1.69E-46 |
MS.gene056043 | MS.gene44427 | -0.800726 | 1.26E-48 | -1.69E-46 |
MS.gene056181 | MS.gene44427 | 0.831924 | 1.27E-55 | -1.69E-46 |
MS.gene056308 | MS.gene44427 | 0.818278 | 2.13E-52 | -1.69E-46 |
MS.gene056390 | MS.gene44427 | 0.812982 | 3.22E-51 | -1.69E-46 |
MS.gene056595 | MS.gene44427 | 0.802404 | 5.70E-49 | -1.69E-46 |
MS.gene056699 | MS.gene44427 | 0.802416 | 5.67E-49 | -1.69E-46 |
MS.gene057294 | MS.gene44427 | 0.803429 | 3.50E-49 | -1.69E-46 |
MS.gene057915 | MS.gene44427 | 0.818167 | 2.26E-52 | -1.69E-46 |
MS.gene058010 | MS.gene44427 | 0.802357 | 5.83E-49 | -1.69E-46 |
MS.gene058081 | MS.gene44427 | 0.822734 | 2.02E-53 | -1.69E-46 |
MS.gene058292 | MS.gene44427 | 0.801351 | 9.38E-49 | -1.69E-46 |
MS.gene058339 | MS.gene44427 | 0.811243 | 7.72E-51 | -1.69E-46 |
MS.gene058625 | MS.gene44427 | 0.804731 | 1.88E-49 | -1.69E-46 |
MS.gene058638 | MS.gene44427 | 0.801447 | 8.97E-49 | -1.69E-46 |
MS.gene058639 | MS.gene44427 | 0.810764 | 9.80E-51 | -1.69E-46 |
MS.gene058647 | MS.gene44427 | 0.801446 | 8.97E-49 | -1.69E-46 |
MS.gene058649 | MS.gene44427 | 0.807644 | 4.57E-50 | -1.69E-46 |
MS.gene059170 | MS.gene44427 | 0.824103 | 9.68E-54 | -1.69E-46 |
MS.gene059283 | MS.gene44427 | 0.803041 | 4.21E-49 | -1.69E-46 |
MS.gene059439 | MS.gene44427 | 0.821428 | 4.06E-53 | -1.69E-46 |
MS.gene059570 | MS.gene44427 | 0.835288 | 1.83E-56 | -1.69E-46 |
MS.gene059713 | MS.gene44427 | 0.802244 | 6.15E-49 | -1.69E-46 |
MS.gene059842 | MS.gene44427 | 0.820496 | 6.65E-53 | -1.69E-46 |
MS.gene060167 | MS.gene44427 | 0.805591 | 1.24E-49 | -1.69E-46 |
MS.gene060296 | MS.gene44427 | 0.802578 | 5.25E-49 | -1.69E-46 |
MS.gene060380 | MS.gene44427 | 0.803625 | 3.19E-49 | -1.69E-46 |
MS.gene060400 | MS.gene44427 | 0.831225 | 1.88E-55 | -1.69E-46 |
MS.gene06052 | MS.gene44427 | 0.822184 | 2.71E-53 | -1.69E-46 |
MS.gene060637 | MS.gene44427 | 0.821282 | 4.39E-53 | -1.69E-46 |
MS.gene060870 | MS.gene44427 | 0.810302 | 1.23E-50 | -1.69E-46 |
MS.gene060932 | MS.gene44427 | 0.813094 | 3.05E-51 | -1.69E-46 |
MS.gene061006 | MS.gene44427 | 0.818042 | 2.41E-52 | -1.69E-46 |
MS.gene061100 | MS.gene44427 | 0.839169 | 1.86E-57 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44427.t1 | MTR_4g097790 | 88.413 | 794 | 56 | 5 | 1 | 769 | 1 | 783 | 0.0 | 1136 |
MS.gene44427.t1 | MTR_5g005430 | 44.156 | 77 | 31 | 3 | 1 | 68 | 1 | 74 | 2.71e-14 | 77.0 |
MS.gene44427.t1 | MTR_1g105890 | 35.025 | 197 | 97 | 8 | 1 | 185 | 1 | 178 | 4.01e-14 | 76.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44427.t1 | AT4G33740 | 51.429 | 70 | 25 | 2 | 8 | 68 | 7 | 76 | 1.84e-17 | 86.7 |
MS.gene44427.t1 | AT4G33740 | 51.429 | 70 | 25 | 2 | 8 | 68 | 7 | 76 | 1.84e-17 | 86.7 |
MS.gene44427.t1 | AT4G33740 | 51.429 | 70 | 25 | 2 | 8 | 68 | 7 | 76 | 1.84e-17 | 86.7 |
MS.gene44427.t1 | AT4G33740 | 51.429 | 70 | 25 | 2 | 8 | 68 | 7 | 76 | 1.84e-17 | 86.7 |
MS.gene44427.t1 | AT4G33740 | 51.429 | 70 | 25 | 2 | 8 | 68 | 7 | 76 | 1.84e-17 | 86.7 |
Find 131 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATTGTTCTTTGAGTCATTC+TGG | 0.163643 | 8.1:+24772898 | None:intergenic |
TTTCCTCCACATGAGGTTTA+AGG | 0.231421 | 8.1:+24774689 | None:intergenic |
GTTTGGTTAGTTTATCAAAT+TGG | 0.237146 | 8.1:-24774790 | MS.gene44427:CDS |
GCATGACGAGCAAACAAAAT+TGG | 0.258368 | 8.1:-24774605 | MS.gene44427:CDS |
TAAAGAATCTCGTGTAGATT+TGG | 0.278934 | 8.1:-24772655 | MS.gene44427:CDS |
GAGGAGAATTAGGCATGTTT+AGG | 0.292908 | 8.1:-24774897 | None:intergenic |
GGCAATGAAGTTGTTAAGTT+AGG | 0.297885 | 8.1:-24774721 | MS.gene44427:CDS |
AGAAGAACAATTTGACAAAA+AGG | 0.307480 | 8.1:-24773708 | MS.gene44427:CDS |
GATTTAGAATCTTCATTGTT+TGG | 0.315496 | 8.1:+24773374 | None:intergenic |
AGAGAATGAGGAAATCAAAA+AGG | 0.319492 | 8.1:-24774410 | MS.gene44427:CDS |
CCTTCGCATCACTACCATTC+TGG | 0.322961 | 8.1:+24773960 | None:intergenic |
CTCTACACTTTCCCTCTCCT+TGG | 0.335719 | 8.1:+24774435 | None:intergenic |
ACAAAATTGGATGATGTTAA+TGG | 0.336252 | 8.1:-24774592 | MS.gene44427:CDS |
CCATTCTGCGATGATGTATT+CGG | 0.342453 | 8.1:+24773479 | None:intergenic |
CTTAGATCTTTGACTCCTCC+TGG | 0.358867 | 8.1:+24774867 | None:intergenic |
AGAAGGGCATGATAAGATTC+AGG | 0.360712 | 8.1:-24773861 | MS.gene44427:CDS |
CTCTCCTCCTTCTGTTCCAT+TGG | 0.361243 | 8.1:+24773886 | None:intergenic |
TGAATCAGTGGAGTCGAAAA+AGG | 0.361299 | 8.1:-24772766 | MS.gene44427:CDS |
GAAAACCCGGAAAAGAATTC+TGG | 0.364276 | 8.1:-24773251 | MS.gene44427:CDS |
CCCGAGTTTGCATTGTCATT+CGG | 0.373470 | 8.1:+24773074 | None:intergenic |
AATGAAGAGAACAAAGAAAC+TGG | 0.374256 | 8.1:-24774334 | MS.gene44427:CDS |
GAAGTAGAGGACACAGAAAC+TGG | 0.375669 | 8.1:-24774388 | MS.gene44427:CDS |
AAAGAATCTCGTGTAGATTT+GGG | 0.384407 | 8.1:-24772654 | MS.gene44427:CDS |
TTCTTGTTGGTGTTTGTGTT+TGG | 0.390640 | 8.1:-24774807 | MS.gene44427:CDS |
CTTGTTTACTATCTTGCTCA+TGG | 0.391649 | 8.1:+24773921 | None:intergenic |
ACTTCCTTGATCATTCGAAT+TGG | 0.392875 | 8.1:+24772704 | None:intergenic |
TTCATCTGATAATCAGGTTC+AGG | 0.393266 | 8.1:-24773831 | MS.gene44427:CDS |
CCTTCTCACTCTCACTTCCT+TGG | 0.393945 | 8.1:+24773609 | None:intergenic |
TGGCTTTCTCCGTTGCTGTC+TGG | 0.398238 | 8.1:+24772624 | None:intergenic |
CTACAAATATGTGTTCTTGT+TGG | 0.398603 | 8.1:-24774820 | MS.gene44427:CDS |
AGAGACTTCATCTGATAATC+AGG | 0.414886 | 8.1:-24773837 | MS.gene44427:CDS |
GTCATTAGCACTTTCATCAC+TGG | 0.424247 | 8.1:+24773037 | None:intergenic |
ATCAGATGTTGCTGGAGATC+AGG | 0.424407 | 8.1:-24773354 | MS.gene44427:CDS |
AGAAGTGTTTCCGCTGTCAT+TGG | 0.432416 | 8.1:+24772869 | None:intergenic |
CGGAGTTTGTACATCATCCT+TGG | 0.439676 | 8.1:+24773499 | None:intergenic |
GCTAGGGAGGAAAATTATTC+CGG | 0.440944 | 8.1:-24773788 | MS.gene44427:CDS |
AAGATCTAAGAACGGCTTCA+AGG | 0.444974 | 8.1:-24774854 | MS.gene44427:CDS |
TTCTGAGCATAAAGAGGATT+CGG | 0.445078 | 8.1:-24774557 | MS.gene44427:CDS |
GCAATGAAGTTGTTAAGTTA+GGG | 0.446418 | 8.1:-24774720 | MS.gene44427:CDS |
TCCTTGGCTGTTTCGTGTGA+CGG | 0.462243 | 8.1:+24773625 | None:intergenic |
CAAGATGGCAATACAAATCA+TGG | 0.470308 | 8.1:-24773296 | MS.gene44427:CDS |
GAGAATGAAAAGATCAAAGA+TGG | 0.475291 | 8.1:-24774127 | MS.gene44427:CDS |
GATTCTAAATCAGATGTTGC+TGG | 0.478943 | 8.1:-24773362 | MS.gene44427:CDS |
GAGAATGAAGAGAACAAAGA+TGG | 0.485331 | 8.1:-24774205 | MS.gene44427:CDS |
GAGAATGAAGAGAACAAAGA+TGG | 0.485331 | 8.1:-24774244 | MS.gene44427:CDS |
AAGTGAGAGTGAGAAGGATC+AGG | 0.486082 | 8.1:-24773603 | MS.gene44427:CDS |
ATCTTTGTTGTCAAATGTGT+TGG | 0.490461 | 8.1:+24773196 | None:intergenic |
ACCGAATGACAATGCAAACT+CGG | 0.494622 | 8.1:-24773075 | MS.gene44427:CDS |
CCGAATACATCATCGCAGAA+TGG | 0.499005 | 8.1:-24773479 | MS.gene44427:CDS |
GACGAATCTGCTCACAAAGA+TGG | 0.500432 | 8.1:-24772738 | MS.gene44427:CDS |
TTAGATCTTTGACTCCTCCT+GGG | 0.501240 | 8.1:+24774868 | None:intergenic |
CGAATACATCATCGCAGAAT+GGG | 0.506493 | 8.1:-24773478 | MS.gene44427:CDS |
AAGTGTAGAGAAAGAGAATG+AGG | 0.515167 | 8.1:-24774422 | MS.gene44427:CDS |
CAGAAGGAGGAGAGAGAGAA+GGG | 0.516062 | 8.1:-24773877 | MS.gene44427:CDS |
TGAGACAAAGAGTAACGATA+AGG | 0.520367 | 8.1:-24773999 | MS.gene44427:CDS |
AGATGCAAACTCAAAGAAAG+AGG | 0.524658 | 8.1:-24773420 | MS.gene44427:CDS |
AATTCCAATTCGAATGATCA+AGG | 0.525233 | 8.1:-24772708 | MS.gene44427:CDS |
TTCTGAGGAAGATGTAGTAG+TGG | 0.531925 | 8.1:+24773322 | None:intergenic |
TAATGCCTCCAGTGCTGTAG+TGG | 0.536214 | 8.1:-24773762 | MS.gene44427:CDS |
ATGAAGTTGTTAAGTTAGGG+AGG | 0.537095 | 8.1:-24774717 | MS.gene44427:CDS |
TTTGTTATCCACTACAGCAC+TGG | 0.540846 | 8.1:+24773754 | None:intergenic |
AGCACTGGAGGCATTATCTC+CGG | 0.541329 | 8.1:+24773769 | None:intergenic |
AGTTGTTAAGTTAGGGAGGA+AGG | 0.542263 | 8.1:-24774713 | MS.gene44427:CDS |
TCAAAATGCTAAGACTGACT+TGG | 0.542530 | 8.1:-24774509 | MS.gene44427:CDS |
CATGAGCAAGATAGTAAACA+AGG | 0.550003 | 8.1:-24773920 | MS.gene44427:CDS |
CAAGGGACGGCGGAGACCAA+TGG | 0.550548 | 8.1:-24773902 | MS.gene44427:CDS |
TCATCTGAAAACAGTGCAGA+GGG | 0.551686 | 8.1:-24772987 | MS.gene44427:CDS |
TGAGGAAGATGTAGTAGTGG+TGG | 0.552598 | 8.1:+24773325 | None:intergenic |
GTGAAAAGAACAATGAGGCT+AGG | 0.556837 | 8.1:-24773805 | MS.gene44427:CDS |
GACAGAAAATGATTCACAGA+AGG | 0.558166 | 8.1:-24773576 | MS.gene44427:CDS |
ACAGAAAACAACAGTGCAGA+GGG | 0.563947 | 8.1:-24772954 | MS.gene44427:CDS |
GAAAAGAATTCTGGTCAAGA+AGG | 0.566269 | 8.1:-24773242 | MS.gene44427:CDS |
TACAAATCATGGTGAATACA+AGG | 0.567359 | 8.1:-24773285 | MS.gene44427:CDS |
GCATGTTTAGGTTATCTCCC+AGG | 0.568543 | 8.1:-24774885 | MS.gene44427:CDS |
ACAGAAGGAGGAGAGAGAGA+AGG | 0.571089 | 8.1:-24773878 | MS.gene44427:CDS |
GCGGAGACCAATGGAACAGA+AGG | 0.571738 | 8.1:-24773893 | MS.gene44427:CDS |
TTCTGATACATCAGTCACTC+AGG | 0.572160 | 8.1:-24772682 | MS.gene44427:CDS |
CAGAAGAAACATCATTGTGA+TGG | 0.579215 | 8.1:+24772604 | None:intergenic |
CCAGAATGGTAGTGATGCGA+AGG | 0.580966 | 8.1:-24773960 | MS.gene44427:CDS |
TGAAAAGAACAATGAGGCTA+GGG | 0.583974 | 8.1:-24773804 | MS.gene44427:CDS |
GAGACCAATGGAACAGAAGG+AGG | 0.585754 | 8.1:-24773890 | MS.gene44427:CDS |
TGACAACAAAGATTCTAGCC+AGG | 0.586204 | 8.1:-24773018 | MS.gene44427:CDS |
AGAATTACTTTCTGCAATCG+AGG | 0.586271 | 8.1:+24773106 | None:intergenic |
AGATAATTCTGAGCATAAAG+AGG | 0.586342 | 8.1:-24774563 | MS.gene44427:CDS |
ATTGCCATCTTGAGTTTCTG+AGG | 0.586725 | 8.1:+24773307 | None:intergenic |
GTTCTGATTCTCATTCACAT+TGG | 0.587926 | 8.1:+24772839 | None:intergenic |
GAATGACAATGCAGAGACCA+AGG | 0.588611 | 8.1:-24774452 | MS.gene44427:CDS |
ACAGAAGTTTCCTCCACATG+AGG | 0.598636 | 8.1:+24774682 | None:intergenic |
TACTACCTCTGATACCTCAT+CGG | 0.598827 | 8.1:-24773147 | MS.gene44427:CDS |
ACCAAGACTAGTGAAAATGA+AGG | 0.600742 | 8.1:-24772801 | MS.gene44427:CDS |
CCAAGGAAGTGAGAGTGAGA+AGG | 0.602518 | 8.1:-24773609 | MS.gene44427:CDS |
AATGAAGAAAGCAACCAGAA+TGG | 0.603174 | 8.1:-24773974 | MS.gene44427:CDS |
GAAGGACCTTAAACCTCATG+TGG | 0.607015 | 8.1:-24774695 | MS.gene44427:CDS |
GGAACTTTGCCAGACAGCAA+CGG | 0.607653 | 8.1:-24772633 | MS.gene44427:CDS |
AATGCTAAGACTGACTTGGA+AGG | 0.608284 | 8.1:-24774505 | MS.gene44427:CDS |
GTTATCCACTACAGCACTGG+AGG | 0.610249 | 8.1:+24773757 | None:intergenic |
TTGTTCCGATGAGGTATCAG+AGG | 0.610717 | 8.1:+24773142 | None:intergenic |
ACAGAAAATGATTCACAGAA+GGG | 0.613293 | 8.1:-24773575 | MS.gene44427:CDS |
CAAGAAGGAACACAAGAAAG+TGG | 0.614187 | 8.1:-24773227 | MS.gene44427:CDS |
TCTTCCTCAGAAACTCAAGA+TGG | 0.618250 | 8.1:-24773311 | MS.gene44427:CDS |
CCGAATGACAATGCAAACTC+GGG | 0.619630 | 8.1:-24773074 | MS.gene44427:CDS |
CACAGAAAACAACAGTGCAG+AGG | 0.623521 | 8.1:-24772955 | MS.gene44427:CDS |
TGATGCTCAAAATGAATCAG+TGG | 0.624955 | 8.1:-24772778 | MS.gene44427:CDS |
ACCGTCACACGAAACAGCCA+AGG | 0.625338 | 8.1:-24773626 | MS.gene44427:CDS |
ATTGGATGATGTTAATGGTG+TGG | 0.625827 | 8.1:-24774587 | MS.gene44427:CDS |
GCAAGATAGTAAACAAGGGA+CGG | 0.627652 | 8.1:-24773915 | MS.gene44427:CDS |
CAATGCAGAGACCAAGGAGA+GGG | 0.630030 | 8.1:-24774446 | MS.gene44427:CDS |
TTCATCTGAAAACAGTGCAG+AGG | 0.631596 | 8.1:-24772988 | MS.gene44427:CDS |
GGACACCACTAATGAAAACC+CGG | 0.633456 | 8.1:-24773264 | MS.gene44427:CDS |
AAAGAACAATGAGGCTAGGG+AGG | 0.643597 | 8.1:-24773801 | MS.gene44427:CDS |
AGAAACTGGAGAAAGTAATG+AGG | 0.649473 | 8.1:-24774374 | MS.gene44427:CDS |
TCTGATAATCAGGTTCAGGA+TGG | 0.650784 | 8.1:-24773827 | MS.gene44427:CDS |
TGTTATAGATGCAAGACACA+AGG | 0.650888 | 8.1:-24774662 | MS.gene44427:CDS |
TCGTGTGACGGTAGAAACAG+TGG | 0.651794 | 8.1:+24773637 | None:intergenic |
TTTCAGATGAAGTAGTGACC+TGG | 0.653028 | 8.1:+24773000 | None:intergenic |
TGCAAGACACAAGGAAGACG+AGG | 0.658957 | 8.1:-24774653 | MS.gene44427:CDS |
GGACCTTAAACCTCATGTGG+AGG | 0.664100 | 8.1:-24774692 | MS.gene44427:CDS |
AGGAGTCAAAGATCTAAGAA+CGG | 0.671099 | 8.1:-24774862 | MS.gene44427:CDS |
ACAATGCAGAGACCAAGGAG+AGG | 0.673196 | 8.1:-24774447 | MS.gene44427:CDS |
TAGTGATGCGAAGGATCAAG+CGG | 0.673292 | 8.1:-24773951 | MS.gene44427:CDS |
AGATAGTAAACAAGGGACGG+CGG | 0.680895 | 8.1:-24773912 | MS.gene44427:CDS |
AAGACACAAGGAAGACGAGG+AGG | 0.683212 | 8.1:-24774650 | MS.gene44427:CDS |
GGATGGTGAAAAGAACAATG+AGG | 0.685838 | 8.1:-24773810 | MS.gene44427:CDS |
TGATGCGAAGGATCAAGCGG+AGG | 0.696334 | 8.1:-24773948 | MS.gene44427:CDS |
AATGAAAATACCAATGACAG+CGG | 0.700561 | 8.1:-24772879 | MS.gene44427:CDS |
TGTTTAGGTTATCTCCCAGG+AGG | 0.705901 | 8.1:-24774882 | MS.gene44427:CDS |
AGAAACCGGAGAAATTACAG+AGG | 0.706376 | 8.1:-24774053 | MS.gene44427:CDS |
CAAAGATGCTACTAGCGACG+AGG | 0.712855 | 8.1:-24773180 | MS.gene44427:CDS |
ATGAGCAAGATAGTAAACAA+GGG | 0.719871 | 8.1:-24773919 | MS.gene44427:CDS |
AGAGCAGAATAACATCACCA+AGG | 0.736602 | 8.1:-24773516 | MS.gene44427:CDS |
AGAAACTGGAGAAAGTACCG+AGG | 0.756900 | 8.1:-24774320 | MS.gene44427:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AATGAAGAGAAGAAAAATGA+AGG | - | chr8.1:24773394-24773413 | MS.gene44427:CDS | 25.0% |
! | ACAAAATTGGATGATGTTAA+TGG | - | chr8.1:24772887-24772906 | MS.gene44427:CDS | 25.0% |
! | AGAAGAACAATTTGACAAAA+AGG | - | chr8.1:24773771-24773790 | MS.gene44427:CDS | 25.0% |
! | ATGAAGAGAAGAAAAATGAA+GGG | - | chr8.1:24773395-24773414 | MS.gene44427:CDS | 25.0% |
!! | GATTTAGAATCTTCATTGTT+TGG | + | chr8.1:24774108-24774127 | None:intergenic | 25.0% |
!!! | GTTTGGTTAGTTTATCAAAT+TGG | - | chr8.1:24772689-24772708 | MS.gene44427:CDS | 25.0% |
AAAGAATCTCGTGTAGATTT+GGG | - | chr8.1:24774825-24774844 | MS.gene44427:CDS | 30.0% | |
AATGAAAATACCAATGACAG+CGG | - | chr8.1:24774600-24774619 | MS.gene44427:CDS | 30.0% | |
AATGAAGAGAACAAAGAAAC+TGG | - | chr8.1:24773145-24773164 | MS.gene44427:CDS | 30.0% | |
AATTCCAATTCGAATGATCA+AGG | - | chr8.1:24774771-24774790 | MS.gene44427:CDS | 30.0% | |
ACAGAAAATGATTCACAGAA+GGG | - | chr8.1:24773904-24773923 | MS.gene44427:CDS | 30.0% | |
AGAGAATGAGGAAATCAAAA+AGG | - | chr8.1:24773069-24773088 | MS.gene44427:CDS | 30.0% | |
AGATAATTCTGAGCATAAAG+AGG | - | chr8.1:24772916-24772935 | MS.gene44427:CDS | 30.0% | |
ATGAGCAAGATAGTAAACAA+GGG | - | chr8.1:24773560-24773579 | MS.gene44427:CDS | 30.0% | |
CTACAAATATGTGTTCTTGT+TGG | - | chr8.1:24772659-24772678 | MS.gene44427:CDS | 30.0% | |
GAGAATGAAAAGATCAAAGA+TGG | - | chr8.1:24773352-24773371 | MS.gene44427:CDS | 30.0% | |
GCAATGAAGTTGTTAAGTTA+GGG | - | chr8.1:24772759-24772778 | MS.gene44427:CDS | 30.0% | |
TAAAGAATCTCGTGTAGATT+TGG | - | chr8.1:24774824-24774843 | MS.gene44427:CDS | 30.0% | |
TACAAATCATGGTGAATACA+AGG | - | chr8.1:24774194-24774213 | MS.gene44427:CDS | 30.0% | |
TGAAGAGAAGAAAAATGAAG+GGG | - | chr8.1:24773396-24773415 | MS.gene44427:CDS | 30.0% | |
! | ATCTTTGTTGTCAAATGTGT+TGG | + | chr8.1:24774286-24774305 | None:intergenic | 30.0% |
AAGTGTAGAGAAAGAGAATG+AGG | - | chr8.1:24773057-24773076 | MS.gene44427:CDS | 35.0% | |
AATGAAGAAAGCAACCAGAA+TGG | - | chr8.1:24773505-24773524 | MS.gene44427:CDS | 35.0% | |
ACCAAGACTAGTGAAAATGA+AGG | - | chr8.1:24774678-24774697 | MS.gene44427:CDS | 35.0% | |
ACTTCCTTGATCATTCGAAT+TGG | + | chr8.1:24774778-24774797 | None:intergenic | 35.0% | |
AGAAACTGGAGAAAGTAATG+AGG | - | chr8.1:24773105-24773124 | MS.gene44427:CDS | 35.0% | |
AGAATTACTTTCTGCAATCG+AGG | + | chr8.1:24774376-24774395 | None:intergenic | 35.0% | |
AGAGACTTCATCTGATAATC+AGG | - | chr8.1:24773642-24773661 | MS.gene44427:CDS | 35.0% | |
AGATGCAAACTCAAAGAAAG+AGG | - | chr8.1:24774059-24774078 | MS.gene44427:CDS | 35.0% | |
AGGAGTCAAAGATCTAAGAA+CGG | - | chr8.1:24772617-24772636 | MS.gene44427:CDS | 35.0% | |
ATGAAGTTGTTAAGTTAGGG+AGG | - | chr8.1:24772762-24772781 | MS.gene44427:CDS | 35.0% | |
ATTGGATGATGTTAATGGTG+TGG | - | chr8.1:24772892-24772911 | MS.gene44427:CDS | 35.0% | |
CAAGATGGCAATACAAATCA+TGG | - | chr8.1:24774183-24774202 | MS.gene44427:CDS | 35.0% | |
CAGAAGAAACATCATTGTGA+TGG | + | chr8.1:24774878-24774897 | None:intergenic | 35.0% | |
CATGAGCAAGATAGTAAACA+AGG | - | chr8.1:24773559-24773578 | MS.gene44427:CDS | 35.0% | |
CATTGTTCTTTGAGTCATTC+TGG | + | chr8.1:24774584-24774603 | None:intergenic | 35.0% | |
CTTGTTTACTATCTTGCTCA+TGG | + | chr8.1:24773561-24773580 | None:intergenic | 35.0% | |
GAAAAGAATTCTGGTCAAGA+AGG | - | chr8.1:24774237-24774256 | MS.gene44427:CDS | 35.0% | |
GAAGAGAAGAAAAATGAAGG+GGG | - | chr8.1:24773397-24773416 | MS.gene44427:CDS | 35.0% | |
GACAGAAAATGATTCACAGA+AGG | - | chr8.1:24773903-24773922 | MS.gene44427:CDS | 35.0% | |
GAGAATGAAGAGAACAAAGA+TGG | - | chr8.1:24773196-24773215 | MS.gene44427:CDS | 35.0% | |
GATTCTAAATCAGATGTTGC+TGG | - | chr8.1:24774117-24774136 | MS.gene44427:CDS | 35.0% | |
GGAAATCAAAAAGGAAGTAG+AGG | - | chr8.1:24773078-24773097 | MS.gene44427:CDS | 35.0% | |
GGCAATGAAGTTGTTAAGTT+AGG | - | chr8.1:24772758-24772777 | MS.gene44427:CDS | 35.0% | |
GTTCTGATTCTCATTCACAT+TGG | + | chr8.1:24774643-24774662 | None:intergenic | 35.0% | |
TCAAAATGCTAAGACTGACT+TGG | - | chr8.1:24772970-24772989 | MS.gene44427:CDS | 35.0% | |
TGAAAAGAACAATGAGGCTA+GGG | - | chr8.1:24773675-24773694 | MS.gene44427:CDS | 35.0% | |
TGAGACAAAGAGTAACGATA+AGG | - | chr8.1:24773480-24773499 | MS.gene44427:CDS | 35.0% | |
TGATGCTCAAAATGAATCAG+TGG | - | chr8.1:24774701-24774720 | MS.gene44427:CDS | 35.0% | |
TGTTATAGATGCAAGACACA+AGG | - | chr8.1:24772817-24772836 | MS.gene44427:CDS | 35.0% | |
TTCATCTGATAATCAGGTTC+AGG | - | chr8.1:24773648-24773667 | MS.gene44427:CDS | 35.0% | |
TTCTGAGCATAAAGAGGATT+CGG | - | chr8.1:24772922-24772941 | MS.gene44427:CDS | 35.0% | |
! | ATCTTTCTTTTGTTCCGATG+AGG | + | chr8.1:24774349-24774368 | None:intergenic | 35.0% |
! | CTTTTCCTCTGTAATTTCTC+CGG | + | chr8.1:24773434-24773453 | None:intergenic | 35.0% |
! | TCTTGACCAGAATTCTTTTC+CGG | + | chr8.1:24774237-24774256 | None:intergenic | 35.0% |
! | TTCTTGTTGGTGTTTGTGTT+TGG | - | chr8.1:24772672-24772691 | MS.gene44427:CDS | 35.0% |
!! | ACCTTCATTTTCACTAGTCT+TGG | + | chr8.1:24774682-24774701 | None:intergenic | 35.0% |
AAGATCTAAGAACGGCTTCA+AGG | - | chr8.1:24772625-24772644 | MS.gene44427:CDS | 40.0% | |
ACAGAAAACAACAGTGCAGA+GGG | - | chr8.1:24774525-24774544 | MS.gene44427:CDS | 40.0% | |
ACCGAATGACAATGCAAACT+CGG | - | chr8.1:24774404-24774423 | MS.gene44427:CDS | 40.0% | |
AGAAACCGGAGAAATTACAG+AGG | - | chr8.1:24773426-24773445 | MS.gene44427:CDS | 40.0% | |
AGAGCAGAATAACATCACCA+AGG | - | chr8.1:24773963-24773982 | MS.gene44427:CDS | 40.0% | |
AGTTGTTAAGTTAGGGAGGA+AGG | - | chr8.1:24772766-24772785 | MS.gene44427:CDS | 40.0% | |
ATTGCCATCTTGAGTTTCTG+AGG | + | chr8.1:24774175-24774194 | None:intergenic | 40.0% | |
CAAGAAGGAACACAAGAAAG+TGG | - | chr8.1:24774252-24774271 | MS.gene44427:CDS | 40.0% | |
CCATTCTGCGATGATGTATT+CGG | + | chr8.1:24774003-24774022 | None:intergenic | 40.0% | |
CGAATACATCATCGCAGAAT+GGG | - | chr8.1:24774001-24774020 | MS.gene44427:CDS | 40.0% | |
GAAAACCCGGAAAAGAATTC+TGG | - | chr8.1:24774228-24774247 | MS.gene44427:CDS | 40.0% | |
GCAAGATAGTAAACAAGGGA+CGG | - | chr8.1:24773564-24773583 | MS.gene44427:CDS | 40.0% | |
GCATGACGAGCAAACAAAAT+TGG | - | chr8.1:24772874-24772893 | MS.gene44427:CDS | 40.0% | |
GCTAGGGAGGAAAATTATTC+CGG | - | chr8.1:24773691-24773710 | MS.gene44427:CDS | 40.0% | |
GGATGGTGAAAAGAACAATG+AGG | - | chr8.1:24773669-24773688 | MS.gene44427:CDS | 40.0% | |
GTCATTAGCACTTTCATCAC+TGG | + | chr8.1:24774445-24774464 | None:intergenic | 40.0% | |
GTGAAAAGAACAATGAGGCT+AGG | - | chr8.1:24773674-24773693 | MS.gene44427:CDS | 40.0% | |
TACTACCTCTGATACCTCAT+CGG | - | chr8.1:24774332-24774351 | MS.gene44427:CDS | 40.0% | |
TCATCTGAAAACAGTGCAGA+GGG | - | chr8.1:24774492-24774511 | MS.gene44427:CDS | 40.0% | |
TCTGATAATCAGGTTCAGGA+TGG | - | chr8.1:24773652-24773671 | MS.gene44427:CDS | 40.0% | |
TCTTCCTCAGAAACTCAAGA+TGG | - | chr8.1:24774168-24774187 | MS.gene44427:CDS | 40.0% | |
TGAATCAGTGGAGTCGAAAA+AGG | - | chr8.1:24774713-24774732 | MS.gene44427:CDS | 40.0% | |
TGACAACAAAGATTCTAGCC+AGG | - | chr8.1:24774461-24774480 | MS.gene44427:CDS | 40.0% | |
TTAGATCTTTGACTCCTCCT+GGG | + | chr8.1:24772614-24772633 | None:intergenic | 40.0% | |
TTCATCTGAAAACAGTGCAG+AGG | - | chr8.1:24774491-24774510 | MS.gene44427:CDS | 40.0% | |
TTCTGATACATCAGTCACTC+AGG | - | chr8.1:24774797-24774816 | MS.gene44427:CDS | 40.0% | |
TTTCAGATGAAGTAGTGACC+TGG | + | chr8.1:24774482-24774501 | None:intergenic | 40.0% | |
TTTCCTCCACATGAGGTTTA+AGG | + | chr8.1:24772793-24772812 | None:intergenic | 40.0% | |
! | AGAAGGGCATGATAAGATTC+AGG | - | chr8.1:24773618-24773637 | MS.gene44427:CDS | 40.0% |
! | CTCTAGATGACTCTTTTCCT+CGG | + | chr8.1:24773179-24773198 | None:intergenic | 40.0% |
! | CTTGACCAGAATTCTTTTCC+GGG | + | chr8.1:24774236-24774255 | None:intergenic | 40.0% |
! | CTTTTCCGGGTTTTCATTAG+TGG | + | chr8.1:24774223-24774242 | None:intergenic | 40.0% |
! | TTCTGAGGAAGATGTAGTAG+TGG | + | chr8.1:24774160-24774179 | None:intergenic | 40.0% |
! | TTTGTTATCCACTACAGCAC+TGG | + | chr8.1:24773728-24773747 | None:intergenic | 40.0% |
!! | AATGCTAAGACTGACTTGGA+AGG | - | chr8.1:24772974-24772993 | MS.gene44427:CDS | 40.0% |
AAAGAACAATGAGGCTAGGG+AGG | - | chr8.1:24773678-24773697 | MS.gene44427:CDS | 45.0% | |
AAGTGAGAGTGAGAAGGATC+AGG | - | chr8.1:24773876-24773895 | MS.gene44427:CDS | 45.0% | |
ACAGAAGTTTCCTCCACATG+AGG | + | chr8.1:24772800-24772819 | None:intergenic | 45.0% | |
AGATAGTAAACAAGGGACGG+CGG | - | chr8.1:24773567-24773586 | MS.gene44427:CDS | 45.0% | |
ATCAGATGTTGCTGGAGATC+AGG | - | chr8.1:24774125-24774144 | MS.gene44427:CDS | 45.0% | |
CACAGAAAACAACAGTGCAG+AGG | - | chr8.1:24774524-24774543 | MS.gene44427:CDS | 45.0% | |
CCCGAGTTTGCATTGTCATT+CGG | + | chr8.1:24774408-24774427 | None:intergenic | 45.0% | |
CCGAATACATCATCGCAGAA+TGG | - | chr8.1:24774000-24774019 | MS.gene44427:CDS | 45.0% | |
CCGAATGACAATGCAAACTC+GGG | - | chr8.1:24774405-24774424 | MS.gene44427:CDS | 45.0% | |
CGGAGTTTGTACATCATCCT+TGG | + | chr8.1:24773983-24774002 | None:intergenic | 45.0% | |
CTTAGATCTTTGACTCCTCC+TGG | + | chr8.1:24772615-24772634 | None:intergenic | 45.0% | |
GAAGGACCTTAAACCTCATG+TGG | - | chr8.1:24772784-24772803 | MS.gene44427:CDS | 45.0% | |
GAAGTAGAGGACACAGAAAC+TGG | - | chr8.1:24773091-24773110 | MS.gene44427:CDS | 45.0% | |
GAATGACAATGCAGAGACCA+AGG | - | chr8.1:24773027-24773046 | MS.gene44427:CDS | 45.0% | |
GACGAATCTGCTCACAAAGA+TGG | - | chr8.1:24774741-24774760 | MS.gene44427:CDS | 45.0% | |
GGACACCACTAATGAAAACC+CGG | - | chr8.1:24774215-24774234 | MS.gene44427:CDS | 45.0% | |
TAGTGATGCGAAGGATCAAG+CGG | - | chr8.1:24773528-24773547 | MS.gene44427:CDS | 45.0% | |
TATGGAGCGAGCACAAAAAC+TGG | - | chr8.1:24772737-24772756 | MS.gene44427:CDS | 45.0% | |
TGAGGAAGATGTAGTAGTGG+TGG | + | chr8.1:24774157-24774176 | None:intergenic | 45.0% | |
! | TGTTTAGGTTATCTCCCAGG+AGG | - | chr8.1:24772597-24772616 | MS.gene44427:CDS | 45.0% |
! | TTGTTCCGATGAGGTATCAG+AGG | + | chr8.1:24774340-24774359 | None:intergenic | 45.0% |
!! | AGAAACTGGAGAAAGTACCG+AGG | - | chr8.1:24773159-24773178 | MS.gene44427:CDS | 45.0% |
!! | AGAAGTGTTTCCGCTGTCAT+TGG | + | chr8.1:24774613-24774632 | None:intergenic | 45.0% |
AAGACACAAGGAAGACGAGG+AGG | - | chr8.1:24772829-24772848 | MS.gene44427:CDS | 50.0% | |
ACAATGCAGAGACCAAGGAG+AGG | - | chr8.1:24773032-24773051 | MS.gene44427:CDS | 50.0% | |
ACAGAAGGAGGAGAGAGAGA+AGG | - | chr8.1:24773601-24773620 | MS.gene44427:CDS | 50.0% | |
CAAAGATGCTACTAGCGACG+AGG | - | chr8.1:24774299-24774318 | MS.gene44427:CDS | 50.0% | |
CAATGCAGAGACCAAGGAGA+GGG | - | chr8.1:24773033-24773052 | MS.gene44427:CDS | 50.0% | |
CAGAAGGAGGAGAGAGAGAA+GGG | - | chr8.1:24773602-24773621 | MS.gene44427:CDS | 50.0% | |
CCAAGGAAGTGAGAGTGAGA+AGG | - | chr8.1:24773870-24773889 | MS.gene44427:CDS | 50.0% | |
CCTTCGCATCACTACCATTC+TGG | + | chr8.1:24773522-24773541 | None:intergenic | 50.0% | |
CCTTCTCACTCTCACTTCCT+TGG | + | chr8.1:24773873-24773892 | None:intergenic | 50.0% | |
CTCTACACTTTCCCTCTCCT+TGG | + | chr8.1:24773047-24773066 | None:intergenic | 50.0% | |
CTCTCCTCCTTCTGTTCCAT+TGG | + | chr8.1:24773596-24773615 | None:intergenic | 50.0% | |
GAAGGGGGAGAGAAAGAAAC+CGG | - | chr8.1:24773412-24773431 | MS.gene44427:CDS | 50.0% | |
GAGACCAATGGAACAGAAGG+AGG | - | chr8.1:24773589-24773608 | MS.gene44427:CDS | 50.0% | |
GGAACTTTGCCAGACAGCAA+CGG | - | chr8.1:24774846-24774865 | MS.gene44427:CDS | 50.0% | |
GGACCTTAAACCTCATGTGG+AGG | - | chr8.1:24772787-24772806 | MS.gene44427:CDS | 50.0% | |
TAATGCCTCCAGTGCTGTAG+TGG | - | chr8.1:24773717-24773736 | MS.gene44427:CDS | 50.0% | |
TCGTGTGACGGTAGAAACAG+TGG | + | chr8.1:24773845-24773864 | None:intergenic | 50.0% | |
TGCAAGACACAAGGAAGACG+AGG | - | chr8.1:24772826-24772845 | MS.gene44427:CDS | 50.0% | |
! | CCAGAATGGTAGTGATGCGA+AGG | - | chr8.1:24773519-24773538 | MS.gene44427:CDS | 50.0% |
! | GTTATCCACTACAGCACTGG+AGG | + | chr8.1:24773725-24773744 | None:intergenic | 50.0% |
! | TCCTTGGCTGTTTCGTGTGA+CGG | + | chr8.1:24773857-24773876 | None:intergenic | 50.0% |
!! | AGCACTGGAGGCATTATCTC+CGG | + | chr8.1:24773713-24773732 | None:intergenic | 50.0% |
!! | CGCGAGCAAAAAGCGTCTTA+TGG | - | chr8.1:24772719-24772738 | MS.gene44427:CDS | 50.0% |
ACCGTCACACGAAACAGCCA+AGG | - | chr8.1:24773853-24773872 | MS.gene44427:CDS | 55.0% | |
GCGGAGACCAATGGAACAGA+AGG | - | chr8.1:24773586-24773605 | MS.gene44427:CDS | 55.0% | |
TGATGCGAAGGATCAAGCGG+AGG | - | chr8.1:24773531-24773550 | MS.gene44427:CDS | 55.0% | |
TGGCTTTCTCCGTTGCTGTC+TGG | + | chr8.1:24774858-24774877 | None:intergenic | 55.0% | |
CAAGGGACGGCGGAGACCAA+TGG | - | chr8.1:24773577-24773596 | MS.gene44427:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 24772596 | 24774905 | 24772596 | ID=MS.gene44427 |
chr8.1 | mRNA | 24772596 | 24774905 | 24772596 | ID=MS.gene44427.t1;Parent=MS.gene44427 |
chr8.1 | exon | 24772596 | 24774905 | 24772596 | ID=MS.gene44427.t1.exon1;Parent=MS.gene44427.t1 |
chr8.1 | CDS | 24772596 | 24774905 | 24772596 | ID=cds.MS.gene44427.t1;Parent=MS.gene44427.t1 |
Gene Sequence |
Protein sequence |