Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46374.t1 | XP_024638649.1 | 95.8 | 166 | 7 | 0 | 1 | 166 | 33 | 198 | 1.30E-84 | 322.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46374.t1 | Q8GT41 | 36.5 | 159 | 93 | 3 | 5 | 159 | 22 | 176 | 4.3e-20 | 99.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46374.t1 | A0A2Z6M3P1 | 84.3 | 166 | 26 | 0 | 1 | 166 | 35 | 200 | 2.8e-73 | 284.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene46374 | 0.825635 | 4.21E-54 | -1.69E-46 |
| MS.gene049435 | MS.gene46374 | 0.808223 | 3.44E-50 | -1.69E-46 |
| MS.gene049501 | MS.gene46374 | 0.808549 | 2.93E-50 | -1.69E-46 |
| MS.gene049821 | MS.gene46374 | 0.809127 | 2.21E-50 | -1.69E-46 |
| MS.gene050020 | MS.gene46374 | 0.81902 | 1.45E-52 | -1.69E-46 |
| MS.gene050303 | MS.gene46374 | 0.821925 | 3.12E-53 | -1.69E-46 |
| MS.gene050442 | MS.gene46374 | 0.82638 | 2.80E-54 | -1.69E-46 |
| MS.gene050750 | MS.gene46374 | 0.811625 | 6.38E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene46374 | 0.841055 | 5.99E-58 | -1.69E-46 |
| MS.gene050815 | MS.gene46374 | 0.849884 | 2.43E-60 | -1.69E-46 |
| MS.gene050844 | MS.gene46374 | 0.80168 | 8.03E-49 | -1.69E-46 |
| MS.gene050953 | MS.gene46374 | 0.821919 | 3.13E-53 | -1.69E-46 |
| MS.gene051243 | MS.gene46374 | 0.803656 | 3.14E-49 | -1.69E-46 |
| MS.gene051265 | MS.gene46374 | 0.815866 | 7.42E-52 | -1.69E-46 |
| MS.gene051328 | MS.gene46374 | 0.800566 | 1.36E-48 | -1.69E-46 |
| MS.gene052012 | MS.gene46374 | 0.804249 | 2.37E-49 | -1.69E-46 |
| MS.gene052376 | MS.gene46374 | 0.81863 | 1.77E-52 | -1.69E-46 |
| MS.gene052426 | MS.gene46374 | 0.811884 | 5.60E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene46374 | 0.803117 | 4.06E-49 | -1.69E-46 |
| MS.gene05288 | MS.gene46374 | 0.838583 | 2.64E-57 | -1.69E-46 |
| MS.gene05289 | MS.gene46374 | 0.826483 | 2.65E-54 | -1.69E-46 |
| MS.gene053008 | MS.gene46374 | 0.836973 | 6.83E-57 | -1.69E-46 |
| MS.gene053074 | MS.gene46374 | 0.830949 | 2.20E-55 | -1.69E-46 |
| MS.gene053166 | MS.gene46374 | 0.806992 | 6.28E-50 | -1.69E-46 |
| MS.gene053184 | MS.gene46374 | 0.802744 | 4.85E-49 | -1.69E-46 |
| MS.gene053630 | MS.gene46374 | 0.808687 | 2.74E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene46374 | 0.802231 | 6.19E-49 | -1.69E-46 |
| MS.gene054405 | MS.gene46374 | 0.815191 | 1.05E-51 | -1.69E-46 |
| MS.gene054472 | MS.gene46374 | 0.821633 | 3.64E-53 | -1.69E-46 |
| MS.gene05468 | MS.gene46374 | 0.820389 | 7.04E-53 | -1.69E-46 |
| MS.gene054713 | MS.gene46374 | 0.842667 | 2.25E-58 | -1.69E-46 |
| MS.gene05510 | MS.gene46374 | 0.816684 | 4.87E-52 | -1.69E-46 |
| MS.gene055358 | MS.gene46374 | 0.811288 | 7.55E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene46374 | 0.812481 | 4.15E-51 | -1.69E-46 |
| MS.gene055608 | MS.gene46374 | 0.863773 | 1.96E-64 | -1.69E-46 |
| MS.gene055818 | MS.gene46374 | 0.809578 | 1.77E-50 | -1.69E-46 |
| MS.gene055860 | MS.gene46374 | 0.800655 | 1.30E-48 | -1.69E-46 |
| MS.gene055926 | MS.gene46374 | 0.827238 | 1.75E-54 | -1.69E-46 |
| MS.gene05604 | MS.gene46374 | 0.808506 | 3.00E-50 | -1.69E-46 |
| MS.gene056215 | MS.gene46374 | 0.801058 | 1.08E-48 | -1.69E-46 |
| MS.gene057693 | MS.gene46374 | 0.833524 | 5.07E-56 | -1.69E-46 |
| MS.gene058084 | MS.gene46374 | 0.829838 | 4.11E-55 | -1.69E-46 |
| MS.gene058146 | MS.gene46374 | 0.829885 | 4.01E-55 | -1.69E-46 |
| MS.gene058168 | MS.gene46374 | 0.824943 | 6.14E-54 | -1.69E-46 |
| MS.gene058548 | MS.gene46374 | 0.804669 | 1.93E-49 | -1.69E-46 |
| MS.gene058549 | MS.gene46374 | 0.800268 | 1.56E-48 | -1.69E-46 |
| MS.gene059006 | MS.gene46374 | 0.803889 | 2.81E-49 | -1.69E-46 |
| MS.gene05979 | MS.gene46374 | 0.805453 | 1.33E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene46374 | 0.82466 | 7.16E-54 | -1.69E-46 |
| MS.gene060322 | MS.gene46374 | 0.840608 | 7.85E-58 | -1.69E-46 |
| MS.gene060429 | MS.gene46374 | 0.82199 | 3.01E-53 | -1.69E-46 |
| MS.gene060802 | MS.gene46374 | 0.83086 | 2.32E-55 | -1.69E-46 |
| MS.gene060803 | MS.gene46374 | 0.84258 | 2.37E-58 | -1.69E-46 |
| MS.gene060998 | MS.gene46374 | 0.82012 | 8.11E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46374.t1 | MTR_8g009300 | 34.783 | 161 | 103 | 2 | 9 | 167 | 27 | 187 | 3.37e-31 | 111 |
| MS.gene46374.t1 | MTR_4g099010 | 33.962 | 159 | 98 | 3 | 8 | 159 | 22 | 180 | 8.86e-24 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46374.t1 | AT5G38610 | 37.278 | 169 | 86 | 4 | 8 | 159 | 24 | 189 | 2.39e-29 | 107 |
| MS.gene46374.t1 | AT5G46940 | 31.169 | 154 | 105 | 1 | 7 | 159 | 21 | 174 | 5.43e-24 | 92.8 |
| MS.gene46374.t1 | AT5G46970 | 30.137 | 146 | 99 | 2 | 5 | 147 | 19 | 164 | 7.86e-17 | 73.9 |
| MS.gene46374.t1 | AT5G46930 | 30.573 | 157 | 102 | 4 | 7 | 159 | 21 | 174 | 1.94e-16 | 73.2 |
| MS.gene46374.t1 | AT5G46960 | 26.974 | 152 | 109 | 2 | 9 | 159 | 23 | 173 | 1.24e-13 | 65.9 |
| MS.gene46374.t1 | AT5G46950 | 26.316 | 152 | 110 | 2 | 9 | 159 | 23 | 173 | 1.99e-11 | 59.7 |
Find 41 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTATGTGTTGGGTTGTTTA+AGG | 0.182100 | 8.3:+21740484 | MS.gene46374:CDS |
| TTTATGCTCGTCGGCTCTTC+CGG | 0.294019 | 8.3:+21740335 | MS.gene46374:CDS |
| GGGTTGTTTAAGGGATTGTT+TGG | 0.324137 | 8.3:+21740494 | MS.gene46374:CDS |
| GACTTGGATGAGTTCGGTTA+TGG | 0.345933 | 8.3:+21740593 | MS.gene46374:CDS |
| GTCGGCTCTTCCGGTGATTC+CGG | 0.364413 | 8.3:+21740344 | MS.gene46374:CDS |
| GTATGTGTTGGGTTGTTTAA+GGG | 0.377573 | 8.3:+21740485 | MS.gene46374:CDS |
| GCGAAGATTCAGAAGATGTT+GGG | 0.391461 | 8.3:+21740444 | MS.gene46374:CDS |
| TATAATCTCTTTCAGTTATG+TGG | 0.394892 | 8.3:+21740684 | MS.gene46374:CDS |
| GATTGCAATGGAGTTGGCTT+TGG | 0.409188 | 8.3:+21740401 | MS.gene46374:CDS |
| CAGCCACAGGGGTGGACAAA+TGG | 0.417230 | 8.3:-21740725 | None:intergenic |
| GGCTGTGATTGCAATGGAGT+TGG | 0.446568 | 8.3:+21740395 | MS.gene46374:CDS |
| GGTTGTTTAAGGGATTGTTT+GGG | 0.450416 | 8.3:+21740495 | MS.gene46374:CDS |
| AGTTTGGATAAGTATGTGTT+GGG | 0.478867 | 8.3:+21740474 | MS.gene46374:CDS |
| GAGTAGGACTTGGATGAGTT+CGG | 0.483782 | 8.3:+21740587 | MS.gene46374:CDS |
| ATTATGAAGTGAGTAGGACT+TGG | 0.486236 | 8.3:+21740577 | MS.gene46374:CDS |
| GGCACTACATTTGCAGCCAC+AGG | 0.494008 | 8.3:-21740738 | None:intergenic |
| GAGCTATAGTTTATGCTCGT+CGG | 0.496841 | 8.3:+21740326 | MS.gene46374:CDS |
| TGCGAAGATTCAGAAGATGT+TGG | 0.501180 | 8.3:+21740443 | MS.gene46374:CDS |
| TATAGCTCAAAATCACAGAT+TGG | 0.515062 | 8.3:-21740311 | None:intergenic |
| GTGTAGGGATACAGCTGGAC+AGG | 0.524147 | 8.3:+21742593 | MS.gene46374:intron |
| GAATGACTCACCGGAATCAC+CGG | 0.525214 | 8.3:-21740354 | None:intergenic |
| TTCGACGAATCTTGAAGGGT+TGG | 0.528585 | 8.3:+21740374 | MS.gene46374:CDS |
| GCTCAAAATCACAGATTGGT+TGG | 0.539682 | 8.3:-21740307 | None:intergenic |
| AGTCATTCGACGAATCTTGA+AGG | 0.549393 | 8.3:+21740369 | MS.gene46374:CDS |
| CGAAGATTCAGAAGATGTTG+GGG | 0.569198 | 8.3:+21740445 | MS.gene46374:CDS |
| CGGGGAATTATGAAGTGAGT+AGG | 0.574860 | 8.3:+21740571 | MS.gene46374:CDS |
| GCTGCATCAACGTGTCAAGA+AGG | 0.587186 | 8.3:+21740618 | MS.gene46374:CDS |
| GCACTACATTTGCAGCCACA+GGG | 0.594356 | 8.3:-21740737 | None:intergenic |
| GTCATTCGACGAATCTTGAA+GGG | 0.605680 | 8.3:+21740370 | MS.gene46374:CDS |
| AGATTCGTCGAATGACTCAC+CGG | 0.610337 | 8.3:-21740363 | None:intergenic |
| CATGTGTGTAGGGATACAGC+TGG | 0.611173 | 8.3:+21742588 | MS.gene46374:intron |
| GAGTTTGGATAAGTATGTGT+TGG | 0.617238 | 8.3:+21740473 | MS.gene46374:CDS |
| TGGAGTTTCGCCATTGACTG+AGG | 0.626534 | 8.3:+21740656 | MS.gene46374:CDS |
| AGGGTTGGCTGTGATTGCAA+TGG | 0.627909 | 8.3:+21740389 | MS.gene46374:CDS |
| CATCCATTTGTCCACCCCTG+TGG | 0.631517 | 8.3:+21740722 | MS.gene46374:CDS |
| TACATTTGCAGCCACAGGGG+TGG | 0.633648 | 8.3:-21740733 | None:intergenic |
| GTTTCATCGATCAAATCATG+AGG | 0.688145 | 8.3:-21740270 | None:intergenic |
| CACTACATTTGCAGCCACAG+GGG | 0.705847 | 8.3:-21740736 | None:intergenic |
| GACTATATAGTGATGCAGTG+TGG | 0.717029 | 8.3:+21740517 | MS.gene46374:CDS |
| GTGGACGATAGTGAGTTCAG+TGG | 0.717886 | 8.3:+21740536 | MS.gene46374:CDS |
| GAAGATTCAGAAGATGTTGG+GGG | 0.731425 | 8.3:+21740446 | MS.gene46374:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTAACAAATTAACTTT+TGG | + | chr8.3:21741678-21741697 | MS.gene46374:intron | 10.0% |
| !! | ATATCTTTATGAGAAAAATT+AGG | - | chr8.3:21741090-21741109 | None:intergenic | 15.0% |
| !! | TATCTTTATGAGAAAAATTA+GGG | - | chr8.3:21741089-21741108 | None:intergenic | 15.0% |
| !! | TTACTTTATAGCATAAAAAT+GGG | + | chr8.3:21742304-21742323 | MS.gene46374:intron | 15.0% |
| !! | TTTACTTTATAGCATAAAAA+TGG | + | chr8.3:21742303-21742322 | MS.gene46374:intron | 15.0% |
| !!! | ATTTGTTAAAATAATAGCAT+TGG | - | chr8.3:21741671-21741690 | None:intergenic | 15.0% |
| !!! | CTTTAAATTTTAGAACTAAA+TGG | - | chr8.3:21742159-21742178 | None:intergenic | 15.0% |
| !! | ATATTAATCCTATAACTCTA+TGG | - | chr8.3:21741256-21741275 | None:intergenic | 20.0% |
| !! | GATAATTAAATTATGATGCT+TGG | - | chr8.3:21741999-21742018 | None:intergenic | 20.0% |
| !! | TCTAAATTCATTTATATCTC+TGG | + | chr8.3:21741412-21741431 | MS.gene46374:intron | 20.0% |
| !!! | ACATATTTTAACACATTACA+AGG | - | chr8.3:21741289-21741308 | None:intergenic | 20.0% |
| !!! | TAATTTGCATATTAAAGAAG+TGG | - | chr8.3:21741967-21741986 | None:intergenic | 20.0% |
| ! | AAACTAAAATAACTTCAGTG+TGG | - | chr8.3:21741790-21741809 | None:intergenic | 25.0% |
| ! | AACTAAAATAACTTCAGTGT+GGG | - | chr8.3:21741789-21741808 | None:intergenic | 25.0% |
| ! | AACTGCAGAATATTCAAAAA+TGG | - | chr8.3:21741560-21741579 | None:intergenic | 25.0% |
| ! | AAGTAAGACATAAACCAAAA+AGG | - | chr8.3:21742431-21742450 | None:intergenic | 25.0% |
| ! | ATATATCTTTACATATGCTC+AGG | - | chr8.3:21741857-21741876 | None:intergenic | 25.0% |
| ! | ATTATGAGTTGCATCTAATA+AGG | - | chr8.3:21741724-21741743 | None:intergenic | 25.0% |
| ! | CAATGTACATTCTAATACAT+AGG | - | chr8.3:21740976-21740995 | None:intergenic | 25.0% |
| ! | GTAGCATGATAAACTTAATA+TGG | - | chr8.3:21741349-21741368 | None:intergenic | 25.0% |
| ! | GTTAGAATACTTAAAAGCAA+CGG | - | chr8.3:21742264-21742283 | None:intergenic | 25.0% |
| ! | TAGTATACCAAATAGATCAT+TGG | - | chr8.3:21742057-21742076 | None:intergenic | 25.0% |
| ! | TATAATCTCTTTCAGTTATG+TGG | + | chr8.3:21740684-21740703 | MS.gene46374:CDS | 25.0% |
| ! | TTTAATTATGAATGAGATGC+TGG | + | chr8.3:21742343-21742362 | MS.gene46374:intron | 25.0% |
| ! | TTTGTTTCCAATGATCTATT+TGG | + | chr8.3:21742047-21742066 | MS.gene46374:intron | 25.0% |
| !! | TACTCATGTAAGCTAATTTT+CGG | + | chr8.3:21741176-21741195 | MS.gene46374:intron | 25.0% |
| !! | TATTTTTCCTTTTTCCTAAC+AGG | + | chr8.3:21741448-21741467 | MS.gene46374:intron | 25.0% |
| !! | TCTAAAATGAAGCTATGAAT+GGG | + | chr8.3:21741641-21741660 | MS.gene46374:intron | 25.0% |
| !! | TTATAATTTTCCTCAGTCAA+TGG | - | chr8.3:21740669-21740688 | None:intergenic | 25.0% |
| !! | TTTTGAATATTCTGCAGTTA+CGG | + | chr8.3:21741561-21741580 | MS.gene46374:intron | 25.0% |
| !!! | AACAGAAAGGTATTCATTTT+CGG | - | chr8.3:21740791-21740810 | None:intergenic | 25.0% |
| AATCCTATAACTCTATGGTT+AGG | - | chr8.3:21741251-21741270 | None:intergenic | 30.0% | |
| ACTGCTGTAATGCTTATATA+TGG | - | chr8.3:21742516-21742535 | None:intergenic | 30.0% | |
| AGAAGTGGATGAGAATAAAA+AGG | - | chr8.3:21741952-21741971 | None:intergenic | 30.0% | |
| AGTTTGGATAAGTATGTGTT+GGG | + | chr8.3:21740474-21740493 | MS.gene46374:CDS | 30.0% | |
| ATAAACATTAGAAGGAAGGA+AGG | - | chr8.3:21741322-21741341 | None:intergenic | 30.0% | |
| ATAAACCAAAAAGGCAAAGT+AGG | - | chr8.3:21742422-21742441 | None:intergenic | 30.0% | |
| ATCCATAAACATTAGAAGGA+AGG | - | chr8.3:21741326-21741345 | None:intergenic | 30.0% | |
| ATCCTATAACTCTATGGTTA+GGG | - | chr8.3:21741250-21741269 | None:intergenic | 30.0% | |
| ATGGATCCATAAACATTAGA+AGG | - | chr8.3:21741330-21741349 | None:intergenic | 30.0% | |
| ATTAAGTTTATCATGCTACC+AGG | + | chr8.3:21741350-21741369 | MS.gene46374:intron | 30.0% | |
| ATTGACATTTGAGAGAGTTA+GGG | + | chr8.3:21740992-21741011 | MS.gene46374:intron | 30.0% | |
| CTGTAATGCTTATATATGGA+TGG | - | chr8.3:21742512-21742531 | None:intergenic | 30.0% | |
| TATAGCTCAAAATCACAGAT+TGG | - | chr8.3:21740314-21740333 | None:intergenic | 30.0% | |
| TTCCTTCCTTCTAATGTTTA+TGG | + | chr8.3:21741321-21741340 | MS.gene46374:intron | 30.0% | |
| ! | AAGATTTTCATAAGACAACC+TGG | - | chr8.3:21741371-21741390 | None:intergenic | 30.0% |
| ! | ATTAGCTTACATGAGTACAA+AGG | - | chr8.3:21741173-21741192 | None:intergenic | 30.0% |
| ! | GTCTAAAATGAAGCTATGAA+TGG | + | chr8.3:21741640-21741659 | MS.gene46374:intron | 30.0% |
| ! | TTATTCCTACTTTGCCTTTT+TGG | + | chr8.3:21742414-21742433 | MS.gene46374:intron | 30.0% |
| AACCCTAACCATAGAGTTAT+AGG | + | chr8.3:21741245-21741264 | MS.gene46374:intron | 35.0% | |
| AATTTGTGTTCCATGTGTGT+AGG | + | chr8.3:21742577-21742596 | MS.gene46374:intron | 35.0% | |
| ACTTAAAAGCAACGGCAAAT+GGG | - | chr8.3:21742256-21742275 | None:intergenic | 35.0% | |
| ATCTTGAAGATCGAACTGTT+CGG | + | chr8.3:21741507-21741526 | MS.gene46374:intron | 35.0% | |
| ATGATCCCAAAGTGAAAACA+CGG | - | chr8.3:21740840-21740859 | None:intergenic | 35.0% | |
| ATGTTGGAATCTGCAACATT+TGG | + | chr8.3:21742371-21742390 | MS.gene46374:intron | 35.0% | |
| ATTAGGGAAGAAAATAGAGG+GGG | + | chr8.3:21741595-21741614 | MS.gene46374:intron | 35.0% | |
| ATTATGAAGTGAGTAGGACT+TGG | + | chr8.3:21740577-21740596 | MS.gene46374:CDS | 35.0% | |
| ATTGTAGCCTGTTAGGAAAA+AGG | - | chr8.3:21741458-21741477 | None:intergenic | 35.0% | |
| ATTTGTGTTCCATGTGTGTA+GGG | + | chr8.3:21742578-21742597 | MS.gene46374:intron | 35.0% | |
| CAGTGAGATTCAGAACTAAA+TGG | - | chr8.3:21742228-21742247 | None:intergenic | 35.0% | |
| CATATTGACAAACTAGAGTG+AGG | + | chr8.3:21742471-21742490 | MS.gene46374:intron | 35.0% | |
| CATTAGGGAAGAAAATAGAG+GGG | + | chr8.3:21741594-21741613 | MS.gene46374:intron | 35.0% | |
| CATTGACATTTGAGAGAGTT+AGG | + | chr8.3:21740991-21741010 | MS.gene46374:intron | 35.0% | |
| CCAAGTAGATCTGATAGAAA+CGG | - | chr8.3:21741113-21741132 | None:intergenic | 35.0% | |
| GAGTTTGGATAAGTATGTGT+TGG | + | chr8.3:21740473-21740492 | MS.gene46374:CDS | 35.0% | |
| GCATTAGGGAAGAAAATAGA+GGG | + | chr8.3:21741593-21741612 | MS.gene46374:intron | 35.0% | |
| GGTTGTTTAAGGGATTGTTT+GGG | + | chr8.3:21740495-21740514 | MS.gene46374:CDS | 35.0% | |
| GTGGATGAGAATAAAAAGGA+TGG | - | chr8.3:21741948-21741967 | None:intergenic | 35.0% | |
| GTTTCATCGATCAAATCATG+AGG | - | chr8.3:21740273-21740292 | None:intergenic | 35.0% | |
| TACTTAAAAGCAACGGCAAA+TGG | - | chr8.3:21742257-21742276 | None:intergenic | 35.0% | |
| TAGCTCTCAAGAAAACAGAA+AGG | - | chr8.3:21740804-21740823 | None:intergenic | 35.0% | |
| TGTTGGAATCTGCAACATTT+GGG | + | chr8.3:21742372-21742391 | MS.gene46374:intron | 35.0% | |
| ! | AAAGTCTTTTGCCTTTGTCT+CGG | + | chr8.3:21742175-21742194 | MS.gene46374:intron | 35.0% |
| ! | AGTATGTGTTGGGTTGTTTA+AGG | + | chr8.3:21740484-21740503 | MS.gene46374:CDS | 35.0% |
| ! | GTATGTGTTGGGTTGTTTAA+GGG | + | chr8.3:21740485-21740504 | MS.gene46374:CDS | 35.0% |
| ! | TGTTATCTTGAGCTTTTGAC+TGG | + | chr8.3:21741812-21741831 | MS.gene46374:intron | 35.0% |
| ! | TTTTCCTAACAGGCTACAAT+CGG | + | chr8.3:21741458-21741477 | MS.gene46374:intron | 35.0% |
| !! | TCGTTGCGAGTTGATTAAAA+AGG | - | chr8.3:21740762-21740781 | None:intergenic | 35.0% |
| !! | TTCAGTGGATGTGTTTTTGT+CGG | + | chr8.3:21740551-21740570 | MS.gene46374:CDS | 35.0% |
| !!! | CAAGAAGGTTTTGAAGAGAA+GGG | + | chr8.3:21740633-21740652 | MS.gene46374:CDS | 35.0% |
| !!! | TCAAGAAGGTTTTGAAGAGA+AGG | + | chr8.3:21740632-21740651 | MS.gene46374:CDS | 35.0% |
| !!! | TGTTTTCACTTTGGGATCAT+AGG | + | chr8.3:21740840-21740859 | MS.gene46374:intron | 35.0% |
| AACTCTATGGTTAGGGTTGT+AGG | - | chr8.3:21741243-21741262 | None:intergenic | 40.0% | |
| AATATTCTGCAGTTACGGTG+AGG | + | chr8.3:21741566-21741585 | MS.gene46374:intron | 40.0% | |
| ACATAGCTTTCATGCAAGTG+AGG | + | chr8.3:21741907-21741926 | MS.gene46374:intron | 40.0% | |
| AGTCATTCGACGAATCTTGA+AGG | + | chr8.3:21740369-21740388 | MS.gene46374:CDS | 40.0% | |
| CATAGCTTTCATGCAAGTGA+GGG | + | chr8.3:21741908-21741927 | MS.gene46374:intron | 40.0% | |
| CCGTTTCTATCAGATCTACT+TGG | + | chr8.3:21741110-21741129 | MS.gene46374:intron | 40.0% | |
| CGAAGATTCAGAAGATGTTG+GGG | + | chr8.3:21740445-21740464 | MS.gene46374:CDS | 40.0% | |
| CTCGGACATAAATCAGATTC+TGG | + | chr8.3:21742193-21742212 | MS.gene46374:intron | 40.0% | |
| CTGATTTATGTCCGAGACAA+AGG | - | chr8.3:21742189-21742208 | None:intergenic | 40.0% | |
| GAAGATTCAGAAGATGTTGG+GGG | + | chr8.3:21740446-21740465 | MS.gene46374:CDS | 40.0% | |
| GACTATATAGTGATGCAGTG+TGG | + | chr8.3:21740517-21740536 | MS.gene46374:CDS | 40.0% | |
| GAGCTATAGTTTATGCTCGT+CGG | + | chr8.3:21740326-21740345 | MS.gene46374:CDS | 40.0% | |
| GCGAAGATTCAGAAGATGTT+GGG | + | chr8.3:21740444-21740463 | MS.gene46374:CDS | 40.0% | |
| GCTCAAAATCACAGATTGGT+TGG | - | chr8.3:21740310-21740329 | None:intergenic | 40.0% | |
| GCTTACATGAGTACAAAGGT+AGG | - | chr8.3:21741169-21741188 | None:intergenic | 40.0% | |
| GGCATTAGGGAAGAAAATAG+AGG | + | chr8.3:21741592-21741611 | MS.gene46374:intron | 40.0% | |
| GGGTTGTTTAAGGGATTGTT+TGG | + | chr8.3:21740494-21740513 | MS.gene46374:CDS | 40.0% | |
| GTCATTCGACGAATCTTGAA+GGG | + | chr8.3:21740370-21740389 | MS.gene46374:CDS | 40.0% | |
| GTTGGAATCTGCAACATTTG+GGG | + | chr8.3:21742373-21742392 | MS.gene46374:intron | 40.0% | |
| TGCGAAGATTCAGAAGATGT+TGG | + | chr8.3:21740443-21740462 | MS.gene46374:CDS | 40.0% | |
| TTAGGGAAGAAAATAGAGGG+GGG | + | chr8.3:21741596-21741615 | MS.gene46374:intron | 40.0% | |
| ! | AATACCGATTGTAGCCTGTT+AGG | - | chr8.3:21741465-21741484 | None:intergenic | 40.0% |
| ! | AGAGATCCGTGTTTTCACTT+TGG | + | chr8.3:21740831-21740850 | MS.gene46374:intron | 40.0% |
| ! | GAGATCCGTGTTTTCACTTT+GGG | + | chr8.3:21740832-21740851 | MS.gene46374:intron | 40.0% |
| !! | TCAGTGGATGTGTTTTTGTC+GGG | + | chr8.3:21740552-21740571 | MS.gene46374:CDS | 40.0% |
| !! | TTCCTCATTAACTGACTTGC+CGG | + | chr8.3:21740906-21740925 | MS.gene46374:intron | 40.0% |
| AGATTCGTCGAATGACTCAC+CGG | - | chr8.3:21740366-21740385 | None:intergenic | 45.0% | |
| AGTTAGGGCCTTTGAGCATT+GGG | + | chr8.3:21741007-21741026 | MS.gene46374:intron | 45.0% | |
| ATGCACTTCCCAATGCTCAA+AGG | - | chr8.3:21741018-21741037 | None:intergenic | 45.0% | |
| CGGGGAATTATGAAGTGAGT+AGG | + | chr8.3:21740571-21740590 | MS.gene46374:CDS | 45.0% | |
| CTATGGTTAGGGTTGTAGGA+GGG | - | chr8.3:21741239-21741258 | None:intergenic | 45.0% | |
| GACTTGGATGAGTTCGGTTA+TGG | + | chr8.3:21740593-21740612 | MS.gene46374:CDS | 45.0% | |
| GAGTAGGACTTGGATGAGTT+CGG | + | chr8.3:21740587-21740606 | MS.gene46374:CDS | 45.0% | |
| GCTGCAGTTATGGTAAGATG+TGG | + | chr8.3:21741529-21741548 | MS.gene46374:intron | 45.0% | |
| TACGGTGAGGAATGGCATTA+GGG | + | chr8.3:21741579-21741598 | MS.gene46374:intron | 45.0% | |
| TAGGGAAGAAAATAGAGGGG+GGG | + | chr8.3:21741597-21741616 | MS.gene46374:intron | 45.0% | |
| TCTATGGTTAGGGTTGTAGG+AGG | - | chr8.3:21741240-21741259 | None:intergenic | 45.0% | |
| TGAGATGCTGGAAGTCATGT+TGG | + | chr8.3:21742355-21742374 | MS.gene46374:intron | 45.0% | |
| TTACGGTGAGGAATGGCATT+AGG | + | chr8.3:21741578-21741597 | MS.gene46374:intron | 45.0% | |
| TTCGACGAATCTTGAAGGGT+TGG | + | chr8.3:21740374-21740393 | MS.gene46374:CDS | 45.0% | |
| ! | GATTGCAATGGAGTTGGCTT+TGG | + | chr8.3:21740401-21740420 | MS.gene46374:CDS | 45.0% |
| !! | CAGTGGATGTGTTTTTGTCG+GGG | + | chr8.3:21740553-21740572 | MS.gene46374:CDS | 45.0% |
| !! | TCCTCATTAACTGACTTGCC+GGG | + | chr8.3:21740907-21740926 | MS.gene46374:intron | 45.0% |
| !!! | GAAGGTTTTGAAGAGAAGGG+TGG | + | chr8.3:21740636-21740655 | MS.gene46374:CDS | 45.0% |
| !! | ATATATAAAAATACTAAATT+TGG | + | chr8.3:21741871-21741890 | MS.gene46374:intron | 5.0% |
| !! | TATATAAAAATACTAAATTT+GGG | + | chr8.3:21741872-21741891 | MS.gene46374:intron | 5.0% |
| CACTACATTTGCAGCCACAG+GGG | - | chr8.3:21740739-21740758 | None:intergenic | 50.0% | |
| CAGCTGTATCCCTACACACA+TGG | - | chr8.3:21742590-21742609 | None:intergenic | 50.0% | |
| CATGTGTGTAGGGATACAGC+TGG | + | chr8.3:21742588-21742607 | MS.gene46374:intron | 50.0% | |
| CTAGTCATACTCCTAGTCCC+CGG | - | chr8.3:21740928-21740947 | None:intergenic | 50.0% | |
| GAACTGTTCGGCTGCAGTTA+TGG | + | chr8.3:21741519-21741538 | MS.gene46374:intron | 50.0% | |
| GAATGACTCACCGGAATCAC+CGG | - | chr8.3:21740357-21740376 | None:intergenic | 50.0% | |
| GAGTTAGGGCCTTTGAGCAT+TGG | + | chr8.3:21741006-21741025 | MS.gene46374:intron | 50.0% | |
| GATGTTGGGGGATGAGAGTT+TGG | + | chr8.3:21740458-21740477 | MS.gene46374:CDS | 50.0% | |
| GCACTACATTTGCAGCCACA+GGG | - | chr8.3:21740740-21740759 | None:intergenic | 50.0% | |
| GCTGCATCAACGTGTCAAGA+AGG | + | chr8.3:21740618-21740637 | MS.gene46374:CDS | 50.0% | |
| GGCTGTGATTGCAATGGAGT+TGG | + | chr8.3:21740395-21740414 | MS.gene46374:CDS | 50.0% | |
| GTGGACGATAGTGAGTTCAG+TGG | + | chr8.3:21740536-21740555 | MS.gene46374:CDS | 50.0% | |
| TCTGCAGTTACGGTGAGGAA+TGG | + | chr8.3:21741571-21741590 | MS.gene46374:intron | 50.0% | |
| ! | AAAATAGAGGGGGGGTGCAA+GGG | + | chr8.3:21741605-21741624 | MS.gene46374:intron | 50.0% |
| ! | TGGAGTTTCGCCATTGACTG+AGG | + | chr8.3:21740656-21740675 | MS.gene46374:CDS | 50.0% |
| !! | AGGGTTGGCTGTGATTGCAA+TGG | + | chr8.3:21740389-21740408 | MS.gene46374:CDS | 50.0% |
| !! | CCTCATTAACTGACTTGCCG+GGG | + | chr8.3:21740908-21740927 | MS.gene46374:intron | 50.0% |
| !! | TTTATGCTCGTCGGCTCTTC+CGG | + | chr8.3:21740335-21740354 | MS.gene46374:CDS | 50.0% |
| CATCCATTTGTCCACCCCTG+TGG | + | chr8.3:21740722-21740741 | MS.gene46374:CDS | 55.0% | |
| CCCCGGCAAGTCAGTTAATG+AGG | - | chr8.3:21740911-21740930 | None:intergenic | 55.0% | |
| GGCACTACATTTGCAGCCAC+AGG | - | chr8.3:21740741-21740760 | None:intergenic | 55.0% | |
| GTGTAGGGATACAGCTGGAC+AGG | + | chr8.3:21742593-21742612 | MS.gene46374:intron | 55.0% | |
| TACATTTGCAGCCACAGGGG+TGG | - | chr8.3:21740736-21740755 | None:intergenic | 55.0% | |
| ! | AAATAGAGGGGGGGTGCAAG+GGG | + | chr8.3:21741606-21741625 | MS.gene46374:intron | 55.0% |
| ! | GAAAATAGAGGGGGGGTGCA+AGG | + | chr8.3:21741604-21741623 | MS.gene46374:intron | 55.0% |
| !! | TAACTGACTTGCCGGGGACT+AGG | + | chr8.3:21740914-21740933 | MS.gene46374:intron | 55.0% |
| CAGCCACAGGGGTGGACAAA+TGG | - | chr8.3:21740728-21740747 | None:intergenic | 60.0% | |
| ! | GGTGCAAGGGGCGCATTGTT+TGG | + | chr8.3:21741618-21741637 | MS.gene46374:intron | 60.0% |
| ! | GTCGGCTCTTCCGGTGATTC+CGG | + | chr8.3:21740344-21740363 | MS.gene46374:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 21740255 | 21742625 | 21740255 | ID=MS.gene46374 |
| chr8.3 | mRNA | 21740255 | 21742625 | 21740255 | ID=MS.gene46374.t1;Parent=MS.gene46374 |
| chr8.3 | exon | 21740255 | 21740752 | 21740255 | ID=MS.gene46374.t1.exon1;Parent=MS.gene46374.t1 |
| chr8.3 | CDS | 21740255 | 21740752 | 21740255 | ID=cds.MS.gene46374.t1;Parent=MS.gene46374.t1 |
| chr8.3 | exon | 21742599 | 21742625 | 21742599 | ID=MS.gene46374.t1.exon2;Parent=MS.gene46374.t1 |
| chr8.3 | CDS | 21742599 | 21742625 | 21742599 | ID=cds.MS.gene46374.t1;Parent=MS.gene46374.t1 |
| Gene Sequence |
| Protein sequence |
