Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55759.t1 | RHN43423.1 | 99.5 | 209 | 1 | 0 | 14 | 222 | 136 | 344 | 3.20E-112 | 414.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55759.t1 | A0A072TUG0 | 99.5 | 209 | 1 | 0 | 14 | 222 | 135 | 343 | 2.3e-112 | 414.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene55759 | 0.815031 | 1.14E-51 | -1.69E-46 |
| MS.gene049633 | MS.gene55759 | 0.826667 | 2.39E-54 | -1.69E-46 |
| MS.gene050170 | MS.gene55759 | 0.870774 | 1.13E-66 | -1.69E-46 |
| MS.gene050323 | MS.gene55759 | 0.833363 | 5.57E-56 | -1.69E-46 |
| MS.gene050496 | MS.gene55759 | 0.8261 | 3.26E-54 | -1.69E-46 |
| MS.gene050577 | MS.gene55759 | 0.811647 | 6.31E-51 | -1.69E-46 |
| MS.gene050697 | MS.gene55759 | 0.80449 | 2.11E-49 | -1.69E-46 |
| MS.gene050747 | MS.gene55759 | 0.800755 | 1.24E-48 | -1.69E-46 |
| MS.gene05080 | MS.gene55759 | 0.835853 | 1.32E-56 | -1.69E-46 |
| MS.gene05081 | MS.gene55759 | 0.824129 | 9.54E-54 | -1.69E-46 |
| MS.gene050868 | MS.gene55759 | 0.840479 | 8.48E-58 | -1.69E-46 |
| MS.gene050871 | MS.gene55759 | 0.840789 | 7.04E-58 | -1.69E-46 |
| MS.gene051268 | MS.gene55759 | 0.804146 | 2.48E-49 | -1.69E-46 |
| MS.gene051317 | MS.gene55759 | 0.803717 | 3.05E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene55759 | 0.844172 | 8.91E-59 | -1.69E-46 |
| MS.gene052164 | MS.gene55759 | 0.813301 | 2.74E-51 | -1.69E-46 |
| MS.gene052503 | MS.gene55759 | 0.834198 | 3.44E-56 | -1.69E-46 |
| MS.gene052823 | MS.gene55759 | 0.841003 | 6.18E-58 | -1.69E-46 |
| MS.gene052825 | MS.gene55759 | 0.839038 | 2.01E-57 | -1.69E-46 |
| MS.gene052966 | MS.gene55759 | 0.817425 | 3.32E-52 | -1.69E-46 |
| MS.gene053203 | MS.gene55759 | 0.820944 | 5.25E-53 | -1.69E-46 |
| MS.gene053479 | MS.gene55759 | 0.84334 | 1.49E-58 | -1.69E-46 |
| MS.gene053824 | MS.gene55759 | 0.845497 | 3.91E-59 | -1.69E-46 |
| MS.gene05470 | MS.gene55759 | 0.824802 | 6.63E-54 | -1.69E-46 |
| MS.gene055502 | MS.gene55759 | 0.803464 | 3.44E-49 | -1.69E-46 |
| MS.gene055577 | MS.gene55759 | 0.83649 | 9.08E-57 | -1.69E-46 |
| MS.gene055748 | MS.gene55759 | 0.81492 | 1.20E-51 | -1.69E-46 |
| MS.gene055750 | MS.gene55759 | 0.804106 | 2.53E-49 | -1.69E-46 |
| MS.gene055751 | MS.gene55759 | 0.809305 | 2.02E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene55759 | 0.86665 | 2.44E-65 | -1.69E-46 |
| MS.gene056266 | MS.gene55759 | 0.805958 | 1.04E-49 | -1.69E-46 |
| MS.gene056387 | MS.gene55759 | 0.823937 | 1.06E-53 | -1.69E-46 |
| MS.gene056504 | MS.gene55759 | 0.828436 | 9.00E-55 | -1.69E-46 |
| MS.gene057658 | MS.gene55759 | 0.816824 | 4.53E-52 | -1.69E-46 |
| MS.gene057831 | MS.gene55759 | 0.805844 | 1.10E-49 | -1.69E-46 |
| MS.gene05787 | MS.gene55759 | 0.800817 | 1.21E-48 | -1.69E-46 |
| MS.gene058157 | MS.gene55759 | 0.803592 | 3.24E-49 | -1.69E-46 |
| MS.gene058334 | MS.gene55759 | -0.808528 | 2.96E-50 | -1.69E-46 |
| MS.gene058338 | MS.gene55759 | 0.821085 | 4.87E-53 | -1.69E-46 |
| MS.gene05837 | MS.gene55759 | 0.835395 | 1.72E-56 | -1.69E-46 |
| MS.gene058382 | MS.gene55759 | -0.804999 | 1.65E-49 | -1.69E-46 |
| MS.gene058544 | MS.gene55759 | 0.809208 | 2.12E-50 | -1.69E-46 |
| MS.gene058838 | MS.gene55759 | 0.848383 | 6.35E-60 | -1.69E-46 |
| MS.gene059023 | MS.gene55759 | 0.847817 | 9.10E-60 | -1.69E-46 |
| MS.gene05914 | MS.gene55759 | 0.80568 | 1.19E-49 | -1.69E-46 |
| MS.gene05926 | MS.gene55759 | -0.809379 | 1.95E-50 | -1.69E-46 |
| MS.gene05960 | MS.gene55759 | -0.802815 | 4.69E-49 | -1.69E-46 |
| MS.gene059667 | MS.gene55759 | 0.812853 | 3.44E-51 | -1.69E-46 |
| MS.gene059837 | MS.gene55759 | 0.808084 | 3.69E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene55759 | 0.801193 | 1.01E-48 | -1.69E-46 |
| MS.gene06000 | MS.gene55759 | 0.856568 | 2.95E-62 | -1.69E-46 |
| MS.gene06027 | MS.gene55759 | 0.981401 | 1.68E-152 | -1.69E-46 |
| MS.gene060595 | MS.gene55759 | -0.813559 | 2.41E-51 | -1.69E-46 |
| MS.gene060762 | MS.gene55759 | 0.809604 | 1.74E-50 | -1.69E-46 |
| MS.gene060778 | MS.gene55759 | 0.801594 | 8.36E-49 | -1.69E-46 |
| MS.gene06077 | MS.gene55759 | 0.822392 | 2.43E-53 | -1.69E-46 |
| MS.gene060982 | MS.gene55759 | 0.849033 | 4.19E-60 | -1.69E-46 |
| MS.gene061044 | MS.gene55759 | -0.829068 | 6.33E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55759.t1 | MTR_8g099085 | 99.522 | 209 | 1 | 0 | 14 | 222 | 135 | 343 | 2.00e-148 | 417 |
| MS.gene55759.t1 | MTR_1g099420 | 73.148 | 216 | 58 | 0 | 7 | 222 | 127 | 342 | 5.61e-116 | 334 |
| MS.gene55759.t1 | MTR_8g467540 | 29.469 | 207 | 127 | 4 | 25 | 218 | 120 | 320 | 1.15e-17 | 80.5 |
| MS.gene55759.t1 | MTR_8g467540 | 29.469 | 207 | 127 | 4 | 25 | 218 | 120 | 320 | 1.15e-17 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55759.t1 | AT5G60750 | 79.524 | 210 | 42 | 1 | 14 | 222 | 138 | 347 | 8.00e-116 | 334 |
| MS.gene55759.t1 | AT1G14270 | 45.882 | 85 | 46 | 0 | 134 | 218 | 124 | 208 | 1.51e-18 | 81.3 |
| MS.gene55759.t1 | AT1G14270 | 45.882 | 85 | 46 | 0 | 134 | 218 | 124 | 208 | 1.51e-18 | 81.3 |
| MS.gene55759.t1 | AT1G14270 | 45.882 | 85 | 46 | 0 | 134 | 218 | 144 | 228 | 2.58e-18 | 80.9 |
| MS.gene55759.t1 | AT1G14270 | 45.882 | 85 | 46 | 0 | 134 | 218 | 250 | 334 | 1.09e-17 | 80.9 |
| MS.gene55759.t1 | AT2G20725 | 41.573 | 89 | 48 | 1 | 130 | 218 | 215 | 299 | 3.29e-13 | 67.8 |
Find 63 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAGTGACAAGGCTAAAT+AGG | 0.223638 | 4.3:-5125464 | None:intergenic |
| CAATGTTGTTGCATAGTCTT+TGG | 0.238859 | 4.3:+5125967 | MS.gene55759:CDS |
| ACACCACACAGGCATGTATT+TGG | 0.285573 | 4.3:-5125820 | None:intergenic |
| AAGGATTCTTTGACATTTAG+AGG | 0.293855 | 4.3:+5125435 | MS.gene55759:CDS |
| ATGCTGCCACTTATATTTCT+TGG | 0.297795 | 4.3:+5125897 | MS.gene55759:CDS |
| CCTTGCTGAAGCCAGTTATA+TGG | 0.298053 | 4.3:-5125416 | None:intergenic |
| AGTTTAGCCTGGAAGGAAAA+TGG | 0.299581 | 4.3:+5125565 | MS.gene55759:CDS |
| GCCTGTGTGGTGTGCAATAC+TGG | 0.349411 | 4.3:+5125830 | MS.gene55759:CDS |
| TGCTGCCACTTATATTTCTT+GGG | 0.375579 | 4.3:+5125898 | MS.gene55759:CDS |
| TCATGTTTCCTCTTGTCAAT+CGG | 0.417015 | 4.3:+5125613 | MS.gene55759:CDS |
| ATCAGTGACAAGGCTAAATA+GGG | 0.430586 | 4.3:-5125463 | None:intergenic |
| AGACTATGCAACAACATTGA+TGG | 0.439339 | 4.3:-5125963 | None:intergenic |
| TCCGTCCCCTTCCACCCGAC+TGG | 0.444389 | 4.3:+5125538 | MS.gene55759:CDS |
| GCCACTTATATTTCTTGGGA+TGG | 0.450363 | 4.3:+5125902 | MS.gene55759:CDS |
| CTTGCTGAAGCCAGTTATAT+GGG | 0.459032 | 4.3:-5125415 | None:intergenic |
| TTCTTTGACATTTAGAGGGC+AGG | 0.461094 | 4.3:+5125440 | MS.gene55759:CDS |
| TATATTTCTTGGGATGGTGA+TGG | 0.475959 | 4.3:+5125908 | MS.gene55759:CDS |
| TCGATGGCAGGATGGGTAGT+AGG | 0.477125 | 4.3:-5125656 | None:intergenic |
| TGATTGTTCAACACTTGAAA+GGG | 0.482634 | 4.3:-5125688 | None:intergenic |
| TTGATTGTTCAACACTTGAA+AGG | 0.487389 | 4.3:-5125689 | None:intergenic |
| CGACTGGTTCAAGTTTAGCC+TGG | 0.494889 | 4.3:+5125554 | MS.gene55759:CDS |
| ATATTTCTTGGGATGGTGAT+GGG | 0.495092 | 4.3:+5125909 | MS.gene55759:CDS |
| ATCGGTCTGCGCTCCTGTGT+GGG | 0.497992 | 4.3:+5125758 | MS.gene55759:CDS |
| CTTGAACCAGTCGGGTGGAA+GGG | 0.500064 | 4.3:-5125544 | None:intergenic |
| ACCTGTGTCGATGGCAGGAT+GGG | 0.500774 | 4.3:-5125663 | None:intergenic |
| TTGAACCAGTCGGGTGGAAG+GGG | 0.510746 | 4.3:-5125543 | None:intergenic |
| CCAGTTATATGGGCTGCAAA+AGG | 0.512015 | 4.3:-5125405 | None:intergenic |
| TATCGGTCTGCGCTCCTGTG+TGG | 0.516259 | 4.3:+5125757 | MS.gene55759:CDS |
| GACCTGTGTCGATGGCAGGA+TGG | 0.530416 | 4.3:-5125664 | None:intergenic |
| GATGTAACTGAAGGACTAGC+TGG | 0.531776 | 4.3:+5125483 | MS.gene55759:CDS |
| ACTTGAACCAGTCGGGTGGA+AGG | 0.533549 | 4.3:-5125545 | None:intergenic |
| AGGCTAAACTTGAACCAGTC+GGG | 0.535684 | 4.3:-5125552 | None:intergenic |
| GTTGTATGCAATTGTAGTAT+CGG | 0.544728 | 4.3:+5125740 | MS.gene55759:CDS |
| GGGTGACCTGTGTCGATGGC+AGG | 0.545730 | 4.3:-5125668 | None:intergenic |
| AATATGGTCGTTGCACTCCA+TGG | 0.550589 | 4.3:-5125140 | None:intergenic |
| TGGTTCAAGTTTAGCCTGGA+AGG | 0.555909 | 4.3:+5125558 | MS.gene55759:CDS |
| ACCATCCCAAGAAATATAAG+TGG | 0.557728 | 4.3:-5125903 | None:intergenic |
| TTGAACAATCAATAAAAGCA+AGG | 0.561023 | 4.3:+5125700 | MS.gene55759:CDS |
| GCATGTATTTGGTAAGTGAC+GGG | 0.563519 | 4.3:-5125809 | None:intergenic |
| ACCAGTCGGGTGGAAGGGGA+CGG | 0.564379 | 4.3:-5125539 | None:intergenic |
| GGCATGTATTTGGTAAGTGA+CGG | 0.567093 | 4.3:-5125810 | None:intergenic |
| CAGGCTAAACTTGAACCAGT+CGG | 0.579922 | 4.3:-5125553 | None:intergenic |
| AGGATTCTTTGACATTTAGA+GGG | 0.596115 | 4.3:+5125436 | MS.gene55759:CDS |
| GTGTGATATTTACACGGTCA+AGG | 0.600158 | 4.3:+5125931 | MS.gene55759:CDS |
| TTGTTGCATAGTCTTTGGAA+TGG | 0.609310 | 4.3:+5125972 | MS.gene55759:CDS |
| TGAGAGAGCCGATTGACAAG+AGG | 0.610131 | 4.3:-5125621 | None:intergenic |
| GCAGGATGGGTAGTAGGTCA+AGG | 0.610496 | 4.3:-5125650 | None:intergenic |
| GCATACAACAACATTGCCAC+AGG | 0.610600 | 4.3:-5125726 | None:intergenic |
| TGAACAATCAATAAAAGCAA+GGG | 0.613230 | 4.3:+5125701 | MS.gene55759:CDS |
| GGTCTGCGCTCCTGTGTGGG+AGG | 0.621158 | 4.3:+5125761 | MS.gene55759:CDS |
| GTAATCGATGGGTTGTACCA+TGG | 0.622454 | 4.3:+5125123 | None:intergenic |
| CCATATAACTGGCTTCAGCA+AGG | 0.626497 | 4.3:+5125416 | MS.gene55759:CDS |
| CTTGTCACTGATGTAACTGA+AGG | 0.627885 | 4.3:+5125474 | MS.gene55759:CDS |
| ACCCATCCTGCCATCGACAC+AGG | 0.628035 | 4.3:+5125662 | MS.gene55759:CDS |
| ACCAGTATTGCACACCACAC+AGG | 0.628546 | 4.3:-5125831 | None:intergenic |
| CTAAACTTGAACCAGTCGGG+TGG | 0.632925 | 4.3:-5125549 | None:intergenic |
| AATAAAAGCAAGGGATCCTG+TGG | 0.652461 | 4.3:+5125710 | MS.gene55759:CDS |
| GAAAGGGTGACCTGTGTCGA+TGG | 0.653532 | 4.3:-5125672 | None:intergenic |
| CTTCAGTTACATCAGTGACA+AGG | 0.657659 | 4.3:-5125473 | None:intergenic |
| AAAACTATTTCCTCCCACAC+AGG | 0.659992 | 4.3:-5125771 | None:intergenic |
| TTACCAAATACATGCCTGTG+TGG | 0.698661 | 4.3:+5125817 | MS.gene55759:CDS |
| TGATGGGTGTGATATTTACA+CGG | 0.748257 | 4.3:+5125925 | MS.gene55759:CDS |
| GTGACGGGAGTAGAAAACCG+CGG | 0.770907 | 4.3:-5125794 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAAACACTTACTTTTAATA+TGG | - | chr4.3:5125159-5125178 | None:intergenic | 20.0% |
| ! | TGAACAATCAATAAAAGCAA+GGG | + | chr4.3:5125701-5125720 | MS.gene55759:CDS | 25.0% |
| ! | TTGAACAATCAATAAAAGCA+AGG | + | chr4.3:5125700-5125719 | MS.gene55759:CDS | 25.0% |
| AAGGATTCTTTGACATTTAG+AGG | + | chr4.3:5125435-5125454 | MS.gene55759:CDS | 30.0% | |
| AGGATTCTTTGACATTTAGA+GGG | + | chr4.3:5125436-5125455 | MS.gene55759:CDS | 30.0% | |
| ATTCCTCGCAGTTAAAATTT+AGG | + | chr4.3:5125229-5125248 | MS.gene55759:intron | 30.0% | |
| GTTGTATGCAATTGTAGTAT+CGG | + | chr4.3:5125740-5125759 | MS.gene55759:CDS | 30.0% | |
| TGATTGTTCAACACTTGAAA+GGG | - | chr4.3:5125691-5125710 | None:intergenic | 30.0% | |
| TTCCTCGCAGTTAAAATTTA+GGG | + | chr4.3:5125230-5125249 | MS.gene55759:intron | 30.0% | |
| TTGATTGTTCAACACTTGAA+AGG | - | chr4.3:5125692-5125711 | None:intergenic | 30.0% | |
| ! | GTTAAAATTTAGGGTACATG+TGG | + | chr4.3:5125239-5125258 | MS.gene55759:intron | 30.0% |
| !! | TTGCACATTTTAACATACAG+AGG | + | chr4.3:5125874-5125893 | MS.gene55759:CDS | 30.0% |
| !!! | CATTTTGGTTTATAGGATCT+TGG | + | chr4.3:5125376-5125395 | MS.gene55759:intron | 30.0% |
| ACCATCCCAAGAAATATAAG+TGG | - | chr4.3:5125906-5125925 | None:intergenic | 35.0% | |
| AGACTATGCAACAACATTGA+TGG | - | chr4.3:5125966-5125985 | None:intergenic | 35.0% | |
| ATATTTCTTGGGATGGTGAT+GGG | + | chr4.3:5125909-5125928 | MS.gene55759:CDS | 35.0% | |
| ATCAGTGACAAGGCTAAATA+GGG | - | chr4.3:5125466-5125485 | None:intergenic | 35.0% | |
| CAATGTTGTTGCATAGTCTT+TGG | + | chr4.3:5125967-5125986 | MS.gene55759:CDS | 35.0% | |
| GATTTCAACTCTGCTCAATT+GGG | - | chr4.3:5125281-5125300 | None:intergenic | 35.0% | |
| TATATTTCTTGGGATGGTGA+TGG | + | chr4.3:5125908-5125927 | MS.gene55759:CDS | 35.0% | |
| TCATGTTTCCTCTTGTCAAT+CGG | + | chr4.3:5125613-5125632 | MS.gene55759:CDS | 35.0% | |
| ! | ATGCTGCCACTTATATTTCT+TGG | + | chr4.3:5125897-5125916 | MS.gene55759:CDS | 35.0% |
| ! | TGATGGGTGTGATATTTACA+CGG | + | chr4.3:5125925-5125944 | MS.gene55759:CDS | 35.0% |
| ! | TGCTGCCACTTATATTTCTT+GGG | + | chr4.3:5125898-5125917 | MS.gene55759:CDS | 35.0% |
| ! | TTGTTGCATAGTCTTTGGAA+TGG | + | chr4.3:5125972-5125991 | MS.gene55759:CDS | 35.0% |
| !! | ATGGCATTTTGATGTTGTCA+TGG | + | chr4.3:5125584-5125603 | MS.gene55759:CDS | 35.0% |
| !! | TGGCATTTTGATGTTGTCAT+GGG | + | chr4.3:5125585-5125604 | MS.gene55759:CDS | 35.0% |
| !!! | ACATCGGCATTTTGGTTTAT+AGG | + | chr4.3:5125369-5125388 | MS.gene55759:intron | 35.0% |
| !!! | TACCCTAAATTTTAACTGCG+AGG | - | chr4.3:5125235-5125254 | None:intergenic | 35.0% |
| AAAACTATTTCCTCCCACAC+AGG | - | chr4.3:5125774-5125793 | None:intergenic | 40.0% | |
| AACAATAAACGCTCAACCTG+AGG | + | chr4.3:5125304-5125323 | MS.gene55759:intron | 40.0% | |
| AATAAAAGCAAGGGATCCTG+TGG | + | chr4.3:5125710-5125729 | MS.gene55759:CDS | 40.0% | |
| AGGTTGAGCGTTTATTGTTC+AGG | - | chr4.3:5125303-5125322 | None:intergenic | 40.0% | |
| AGTTTAGCCTGGAAGGAAAA+TGG | + | chr4.3:5125565-5125584 | MS.gene55759:CDS | 40.0% | |
| CATCAGTGACAAGGCTAAAT+AGG | - | chr4.3:5125467-5125486 | None:intergenic | 40.0% | |
| CTTCAGTTACATCAGTGACA+AGG | - | chr4.3:5125476-5125495 | None:intergenic | 40.0% | |
| CTTGCTGAAGCCAGTTATAT+GGG | - | chr4.3:5125418-5125437 | None:intergenic | 40.0% | |
| CTTGTCACTGATGTAACTGA+AGG | + | chr4.3:5125474-5125493 | MS.gene55759:CDS | 40.0% | |
| GCATGTATTTGGTAAGTGAC+GGG | - | chr4.3:5125812-5125831 | None:intergenic | 40.0% | |
| GCCACTTATATTTCTTGGGA+TGG | + | chr4.3:5125902-5125921 | MS.gene55759:CDS | 40.0% | |
| GGATTTCAACTCTGCTCAAT+TGG | - | chr4.3:5125282-5125301 | None:intergenic | 40.0% | |
| GGCATGTATTTGGTAAGTGA+CGG | - | chr4.3:5125813-5125832 | None:intergenic | 40.0% | |
| GGTTATGCTTCTTTGGACAT+CGG | + | chr4.3:5125353-5125372 | MS.gene55759:intron | 40.0% | |
| GTGTGATATTTACACGGTCA+AGG | + | chr4.3:5125931-5125950 | MS.gene55759:CDS | 40.0% | |
| TTACCAAATACATGCCTGTG+TGG | + | chr4.3:5125817-5125836 | MS.gene55759:CDS | 40.0% | |
| TTCTTTGACATTTAGAGGGC+AGG | + | chr4.3:5125440-5125459 | MS.gene55759:CDS | 40.0% | |
| ! | TTCTTTGGACATCGGCATTT+TGG | + | chr4.3:5125361-5125380 | MS.gene55759:intron | 40.0% |
| !!! | CAAAATGCCATTTTCCTTCC+AGG | - | chr4.3:5125575-5125594 | None:intergenic | 40.0% |
| AATATGGTCGTTGCACTCCA+TGG | - | chr4.3:5125143-5125162 | None:intergenic | 45.0% | |
| ACACCACACAGGCATGTATT+TGG | - | chr4.3:5125823-5125842 | None:intergenic | 45.0% | |
| AGGCTAAACTTGAACCAGTC+GGG | - | chr4.3:5125555-5125574 | None:intergenic | 45.0% | |
| ATTCGTGCAATCTTTGACGC+AGG | + | chr4.3:5125332-5125351 | MS.gene55759:intron | 45.0% | |
| ATTGCACGAATTACAGCCTC+AGG | - | chr4.3:5125323-5125342 | None:intergenic | 45.0% | |
| CAGGCTAAACTTGAACCAGT+CGG | - | chr4.3:5125556-5125575 | None:intergenic | 45.0% | |
| CCTTGCTGAAGCCAGTTATA+TGG | - | chr4.3:5125419-5125438 | None:intergenic | 45.0% | |
| GCATACAACAACATTGCCAC+AGG | - | chr4.3:5125729-5125748 | None:intergenic | 45.0% | |
| TAGGGTACATGTGGCAATCA+TGG | + | chr4.3:5125248-5125267 | MS.gene55759:intron | 45.0% | |
| TGACGCAGGTTATGCTTCTT+TGG | + | chr4.3:5125346-5125365 | MS.gene55759:intron | 45.0% | |
| ! | CCAGTTATATGGGCTGCAAA+AGG | - | chr4.3:5125408-5125427 | None:intergenic | 45.0% |
| ! | CCATATAACTGGCTTCAGCA+AGG | + | chr4.3:5125416-5125435 | MS.gene55759:CDS | 45.0% |
| ! | CCTTTTGCAGCCCATATAAC+TGG | + | chr4.3:5125405-5125424 | MS.gene55759:CDS | 45.0% |
| ! | GATGTAACTGAAGGACTAGC+TGG | + | chr4.3:5125483-5125502 | MS.gene55759:CDS | 45.0% |
| ! | TGGGAGGAAATAGTTTTCCG+CGG | + | chr4.3:5125777-5125796 | MS.gene55759:CDS | 45.0% |
| ! | TGGTTCAAGTTTAGCCTGGA+AGG | + | chr4.3:5125558-5125577 | MS.gene55759:CDS | 45.0% |
| ACCAGTATTGCACACCACAC+AGG | - | chr4.3:5125834-5125853 | None:intergenic | 50.0% | |
| CTAAACTTGAACCAGTCGGG+TGG | - | chr4.3:5125552-5125571 | None:intergenic | 50.0% | |
| TGAGAGAGCCGATTGACAAG+AGG | - | chr4.3:5125624-5125643 | None:intergenic | 50.0% | |
| ! | CGACTGGTTCAAGTTTAGCC+TGG | + | chr4.3:5125554-5125573 | MS.gene55759:CDS | 50.0% |
| ACTTGAACCAGTCGGGTGGA+AGG | - | chr4.3:5125548-5125567 | None:intergenic | 55.0% | |
| CTTGAACCAGTCGGGTGGAA+GGG | - | chr4.3:5125547-5125566 | None:intergenic | 55.0% | |
| GAAAGGGTGACCTGTGTCGA+TGG | - | chr4.3:5125675-5125694 | None:intergenic | 55.0% | |
| GCAGGATGGGTAGTAGGTCA+AGG | - | chr4.3:5125653-5125672 | None:intergenic | 55.0% | |
| GCCTGTGTGGTGTGCAATAC+TGG | + | chr4.3:5125830-5125849 | MS.gene55759:CDS | 55.0% | |
| TCGATGGCAGGATGGGTAGT+AGG | - | chr4.3:5125659-5125678 | None:intergenic | 55.0% | |
| TTGAACCAGTCGGGTGGAAG+GGG | - | chr4.3:5125546-5125565 | None:intergenic | 55.0% | |
| ! | ACCTGTGTCGATGGCAGGAT+GGG | - | chr4.3:5125666-5125685 | None:intergenic | 55.0% |
| ! | GTGACGGGAGTAGAAAACCG+CGG | - | chr4.3:5125797-5125816 | None:intergenic | 55.0% |
| ACCCATCCTGCCATCGACAC+AGG | + | chr4.3:5125662-5125681 | MS.gene55759:CDS | 60.0% | |
| ATCGGTCTGCGCTCCTGTGT+GGG | + | chr4.3:5125758-5125777 | MS.gene55759:CDS | 60.0% | |
| TATCGGTCTGCGCTCCTGTG+TGG | + | chr4.3:5125757-5125776 | MS.gene55759:CDS | 60.0% | |
| ! | GACCTGTGTCGATGGCAGGA+TGG | - | chr4.3:5125667-5125686 | None:intergenic | 60.0% |
| ACCAGTCGGGTGGAAGGGGA+CGG | - | chr4.3:5125542-5125561 | None:intergenic | 65.0% | |
| ! | GGGTGACCTGTGTCGATGGC+AGG | - | chr4.3:5125671-5125690 | None:intergenic | 65.0% |
| GGTCTGCGCTCCTGTGTGGG+AGG | + | chr4.3:5125761-5125780 | MS.gene55759:CDS | 70.0% | |
| TCCGTCCCCTTCCACCCGAC+TGG | + | chr4.3:5125538-5125557 | MS.gene55759:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 5125130 | 5126022 | 5125130 | ID=MS.gene55759 |
| chr4.3 | mRNA | 5125130 | 5126022 | 5125130 | ID=MS.gene55759.t1;Parent=MS.gene55759 |
| chr4.3 | exon | 5125130 | 5125166 | 5125130 | ID=MS.gene55759.t1.exon1;Parent=MS.gene55759.t1 |
| chr4.3 | CDS | 5125130 | 5125166 | 5125130 | ID=cds.MS.gene55759.t1;Parent=MS.gene55759.t1 |
| chr4.3 | exon | 5125391 | 5126022 | 5125391 | ID=MS.gene55759.t1.exon2;Parent=MS.gene55759.t1 |
| chr4.3 | CDS | 5125391 | 5126022 | 5125391 | ID=cds.MS.gene55759.t1;Parent=MS.gene55759.t1 |
| Gene Sequence |
| Protein sequence |
