AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene58103


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58103.t1 MTR_8g093250 98.202 445 8 0 1 445 1 445 0.0 899
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 136 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGGTTCCCTTCAAGATTT+TGG 0.069730 4.2:-9443701 MS.gene58103:CDS
CGCCTTTCTGCGCCCGGGCT+TGG 0.209663 4.2:-9442656 MS.gene58103:CDS
TGCTGAAGTTCTGGCATCTA+AGG 0.222981 4.2:-9442448 MS.gene58103:CDS
CTTCCTGATTGCTGAAGTTC+TGG 0.223414 4.2:-9442457 MS.gene58103:CDS
AAAAGGGACTCTGGTGGTTT+GGG 0.240265 4.2:-9443719 MS.gene58103:CDS
GACACATTAGAGGAAGTAAT+TGG 0.241899 4.2:-9443743 MS.gene58103:CDS
GAAAAGGGACTCTGGTGGTT+TGG 0.264666 4.2:-9443720 MS.gene58103:CDS
TTTGGTGGTTGCACTGGTTA+TGG 0.310624 4.2:-9444549 MS.gene58103:CDS
TTCTTTCACCTCAAATGGTT+GGG 0.316414 4.2:-9442577 MS.gene58103:CDS
TCGGCAGGGTGCAGATTTGA+TGG 0.362196 4.2:-9442771 MS.gene58103:intron
CCATGTGGCGGATATGTTGC+TGG 0.367862 4.2:-9442710 MS.gene58103:CDS
GCCGATGGAACCTTCATTGA+TGG 0.370185 4.2:-9441904 MS.gene58103:CDS
GCAGCGCGCCTTTCTGCGCC+CGG 0.376005 4.2:-9442662 MS.gene58103:CDS
ATTATTTCTTTCACCTCAAA+TGG 0.379919 4.2:-9442582 MS.gene58103:CDS
CCGAGGATGGTGGACTTGAC+TGG 0.385164 4.2:-9443576 MS.gene58103:CDS
CCAATTGCGGGTACCACTCC+TGG 0.392343 4.2:-9442080 MS.gene58103:CDS
ACTTCCTCTAATGTGTCATA+TGG 0.402174 4.2:+9443749 None:intergenic
ATTGCTTCCCCAACCATTTG+AGG 0.410807 4.2:+9442569 None:intergenic
ACCACAATCCACACCAAGCC+CGG 0.425545 4.2:+9442643 None:intergenic
TAGAGGAAGTAATTGGGAAA+AGG 0.426036 4.2:-9443736 MS.gene58103:CDS
AAATGCAGGGTGGCACTCAT+TGG 0.430241 4.2:-9441740 MS.gene58103:intron
CAGCACTTTGGTGGTTGCAC+TGG 0.435214 4.2:-9444555 MS.gene58103:CDS
TGGCACTCATTGGACTCAAT+GGG 0.438629 4.2:-9441730 MS.gene58103:CDS
AGAGGTCATGTGGTTATTCA+TGG 0.439010 4.2:-9443504 MS.gene58103:CDS
AGTGGTACCCGCAATTGGTT+TGG 0.441177 4.2:+9442085 None:intergenic
ATCAGCTATTGTTCGTTCAC+AGG 0.442751 4.2:-9444463 MS.gene58103:intron
GTGGCACTCATTGGACTCAA+TGG 0.444697 4.2:-9441731 MS.gene58103:CDS
AACCTGAACTGTATCACATC+GGG 0.445399 4.2:+9442395 None:intergenic
ATGCCAGAACTTCAGCAATC+AGG 0.447778 4.2:+9442454 None:intergenic
ACTTGTCAACAGTTCTTCTC+AGG 0.450400 4.2:-9443973 MS.gene58103:intron
GGTGAAATACCGAGAAGTTC+CGG 0.451794 4.2:-9443678 MS.gene58103:intron
CCAGGAGTGGTACCCGCAAT+TGG 0.455539 4.2:+9442080 None:intergenic
CAGCGCGCCTTTCTGCGCCC+GGG 0.457346 4.2:-9442661 MS.gene58103:CDS
AGAGGAAGTAATTGGGAAAA+GGG 0.458354 4.2:-9443735 MS.gene58103:CDS
GCCTGGCAAAATACAGCAAA+TGG 0.460230 4.2:+9441841 None:intergenic
TTTCTTTCACCTCAAATGGT+TGG 0.466714 4.2:-9442578 MS.gene58103:CDS
TCATACACCAAACCAATTGC+GGG 0.468084 4.2:-9442092 MS.gene58103:CDS
TTCTGCGCCCGGGCTTGGTG+TGG 0.471332 4.2:-9442651 MS.gene58103:CDS
TTATTTGCCCTCTTGAGGCC+AGG 0.474037 4.2:-9443928 MS.gene58103:CDS
CAGACCTCTGATGCATATCC+AGG 0.477506 4.2:+9442062 None:intergenic
TCTGGAACGAAGGGATTGAT+AGG 0.478948 4.2:+9445488 None:intergenic
TGCCTGTAGGCTGTACAACT+TGG 0.486368 4.2:-9442173 MS.gene58103:intron
CACCAAGCCCGGGCGCAGAA+AGG 0.488183 4.2:+9442654 None:intergenic
AGTTTGAGTGTTAATGACAT+AGG 0.488359 4.2:-9443475 MS.gene58103:CDS
TGCTCCATATGACACATTAG+AGG 0.492829 4.2:-9443753 MS.gene58103:CDS
GTGCTTTATTTGCCCTCTTG+AGG 0.493644 4.2:-9443933 MS.gene58103:CDS
GATGCAAAATCCTGAGTGTT+CGG 0.498240 4.2:-9442920 MS.gene58103:CDS
ATTTCACCCCAAAATCTTGA+AGG 0.501972 4.2:+9443693 None:intergenic
CAGGGTGCAGATTTGATGGC+GGG 0.503740 4.2:-9442767 MS.gene58103:CDS
GGTTATGGTCATGATGAAGC+TGG 0.503942 4.2:-9444534 MS.gene58103:CDS
TTTCATCAGCTTGCCGAGGA+TGG 0.507265 4.2:-9443589 MS.gene58103:intron
AATGGTTGGGGAAGCAATCA+AGG 0.508889 4.2:-9442564 MS.gene58103:intron
TGTTCAGAGAAGCTCTCCTG+TGG 0.510171 4.2:-9442117 MS.gene58103:CDS
AATGGTAGATGTTGTTGTAA+TGG 0.513262 4.2:+9445535 None:intergenic
TAATGCTGTCAGCACTTTGG+TGG 0.513811 4.2:-9444564 MS.gene58103:intron
CATCAGCTTGCCGAGGATGG+TGG 0.516636 4.2:-9443586 MS.gene58103:intron
GTCATGGTGGATAATTGCTA+TGG 0.519956 4.2:-9442898 MS.gene58103:CDS
TAGATTTCAGAACTTCTCCT+AGG 0.521668 4.2:+9441700 None:intergenic
GTTTGAGTGTTAATGACATA+GGG 0.522137 4.2:-9443474 MS.gene58103:CDS
GTTCAGAGAAGCTCTCCTGT+GGG 0.522769 4.2:-9442116 MS.gene58103:CDS
AGCGAGTACCTCTGGAACGA+AGG 0.525027 4.2:+9445478 None:intergenic
TTCTGAATGCAATGCATCAA+CGG 0.525308 4.2:+9445373 None:intergenic
ACACATTAGAGGAAGTAATT+GGG 0.527457 4.2:-9443742 MS.gene58103:CDS
CCAGTCAAGTCCACCATCCT+CGG 0.529194 4.2:+9443576 None:intergenic
TCTCAGGTTATCTTTGCCGA+TGG 0.530646 4.2:-9441919 MS.gene58103:intron
TCTTTCACCTCAAATGGTTG+GGG 0.531494 4.2:-9442576 MS.gene58103:CDS
AAAGGCTCTCATGATATCAC+CGG 0.531537 4.2:+9442613 None:intergenic
CCCGGGCTTGGTGTGGATTG+TGG 0.531980 4.2:-9442644 MS.gene58103:CDS
ACTCAATGGGGACTAGTCCT+AGG 0.534013 4.2:-9441717 MS.gene58103:CDS
GTGGATTGTGGTTCAACTCC+CGG 0.534401 4.2:-9442632 MS.gene58103:CDS
TCATGGTGGATAATTGCTAT+GGG 0.535135 4.2:-9442897 MS.gene58103:CDS
AAGTTCTGAAATCTATATGA+TGG 0.540257 4.2:-9441692 None:intergenic
CAAAATGTGCACTCATACAG+AGG 0.542723 4.2:-9443522 MS.gene58103:CDS
AGTAGCATACCGGAACTTCT+CGG 0.544340 4.2:+9443669 None:intergenic
GAGATTCGAACGGGATGCGT+AGG 0.544625 4.2:+9445557 None:intergenic
GTCATACACCAAACCAATTG+CGG 0.548656 4.2:-9442093 MS.gene58103:CDS
CCTCTTGAGGCCAGGAGATG+AGG 0.549373 4.2:-9443920 MS.gene58103:intron
CCACAATCCACACCAAGCCC+GGG 0.549428 4.2:+9442644 None:intergenic
GCTGAAGTTCTGGCATCTAA+GGG 0.550000 4.2:-9442447 MS.gene58103:CDS
TGTTAATGCTGTCAGCACTT+TGG 0.550318 4.2:-9444567 MS.gene58103:intron
AAAAGGGTTACCTCATCTCC+TGG 0.553149 4.2:+9443910 None:intergenic
ACTAGTACTTCCATCAATGA+AGG 0.556777 4.2:+9441894 None:intergenic
GTTATGGTCATGATGAAGCT+GGG 0.559133 4.2:-9444533 MS.gene58103:CDS
ACTAGTGAGCTTTCATGTGA+TGG 0.559350 4.2:-9441877 MS.gene58103:CDS
CCTCATCTCCTGGCCTCAAG+AGG 0.563110 4.2:+9443920 None:intergenic
GTAATTGGGAAAAGGGACTC+TGG 0.564622 4.2:-9443728 MS.gene58103:CDS
GGCAGTTTGATAAAGAATCC+TGG 0.564656 4.2:-9442746 MS.gene58103:CDS
GGCAAATAAAGCACATGTGA+TGG 0.565843 4.2:+9443942 None:intergenic
ACAGCAAATGGCTCTCTAAG+AGG 0.576106 4.2:+9441853 None:intergenic
ATATTATCGCATACCACCAT+GGG 0.576389 4.2:+9442850 None:intergenic
GTTGTAATGGAGATTCGAAC+GGG 0.577259 4.2:+9445548 None:intergenic
CATATTATCGCATACCACCA+TGG 0.578930 4.2:+9442849 None:intergenic
TTTCACCCCAAAATCTTGAA+GGG 0.581207 4.2:+9443694 None:intergenic
GCATTCAGAATTCAGAGCAG+TGG 0.587918 4.2:-9445360 MS.gene58103:CDS
GGGACGTGAAGCTCTTGACC+AGG 0.591339 4.2:-9444511 MS.gene58103:CDS
CATGGAGCAATCGTTCCACC+AGG 0.592431 4.2:+9442728 None:intergenic
TGTTGTAATGGAGATTCGAA+CGG 0.593925 4.2:+9445547 None:intergenic
CACTCCTGGATATGCATCAG+AGG 0.597649 4.2:-9442066 MS.gene58103:intron
CCAGCAACATATCCGCCACA+TGG 0.599034 4.2:+9442710 None:intergenic
GTGAAAAGCTTTAAGAACAC+GGG 0.600306 4.2:+9445313 None:intergenic
TCCATCAATGAAGGTTCCAT+CGG 0.600675 4.2:+9441903 None:intergenic
TATCAATCCCTTCGTTCCAG+AGG 0.600711 4.2:-9445486 MS.gene58103:intron
GCAGGGTGCAGATTTGATGG+CGG 0.604272 4.2:-9442768 MS.gene58103:intron
AAATCCTGAGTGTTCGGTCA+TGG 0.605022 4.2:-9442914 MS.gene58103:CDS
CATGTGGCGGATATGTTGCT+GGG 0.607387 4.2:-9442709 MS.gene58103:CDS
GAAGCGAGAGGCATAGCGAA+TGG 0.611375 4.2:+9445517 None:intergenic
TAATTGCTATGGGGAACTTG+TGG 0.611820 4.2:-9442887 MS.gene58103:CDS
TCCTGAGTGTTCGGTCATGG+TGG 0.614793 4.2:-9442911 MS.gene58103:CDS
CTCATCTCCTGGCCTCAAGA+GGG 0.618882 4.2:+9443921 None:intergenic
ATGCGTAGGATAAGCAGAGA+AGG 0.621133 4.2:+9445571 None:intergenic
TGCTATGGGGAACTTGTGGA+AGG 0.622880 4.2:-9442883 MS.gene58103:CDS
TTATGGTCATGATGAAGCTG+GGG 0.624757 4.2:-9444532 MS.gene58103:CDS
TTCAGAGAAGCTCTCCTGTG+GGG 0.632335 4.2:-9442115 MS.gene58103:CDS
TGTGAAAAGCTTTAAGAACA+CGG 0.632469 4.2:+9445312 None:intergenic
GGTTTGGTGTATGACCCCAC+AGG 0.633665 4.2:+9442101 None:intergenic
AAACCTGAACTGTATCACAT+CGG 0.634425 4.2:+9442394 None:intergenic
CTCTGATGCATATCCAGGAG+TGG 0.634582 4.2:+9442067 None:intergenic
GGAAGGCATTGAACCTCCCA+TGG 0.640149 4.2:-9442866 MS.gene58103:CDS
AAGGCTCTCATGATATCACC+GGG 0.640580 4.2:+9442614 None:intergenic
GCGAGTACCTCTGGAACGAA+GGG 0.641161 4.2:+9445479 None:intergenic
TCCACCATGACCGAACACTC+AGG 0.644287 4.2:+9442910 None:intergenic
CAGAACTTCAGCAATCAGGA+AGG 0.652209 4.2:+9442458 None:intergenic
GCACTCATACAGAGGTCATG+TGG 0.658940 4.2:-9443514 MS.gene58103:CDS
TTATCGCATACCACCATGGG+AGG 0.664402 4.2:+9442853 None:intergenic
GGAACGATTGCTCCATGTGG+CGG 0.666888 4.2:-9442722 MS.gene58103:CDS
GGCACTCATTGGACTCAATG+GGG 0.670357 4.2:-9441729 MS.gene58103:CDS
ATTGGGAAAAGGGACTCTGG+TGG 0.681378 4.2:-9443725 MS.gene58103:CDS
AAAAGCTTTAAGAACACGGG+TGG 0.682092 4.2:+9445316 None:intergenic
GATAGGAACAGAGAAGCGAG+AGG 0.690097 4.2:+9445505 None:intergenic
GGTGGAACGATTGCTCCATG+TGG 0.694007 4.2:-9442725 MS.gene58103:CDS
CCTGAACTGTATCACATCGG+GGG 0.701546 4.2:+9442397 None:intergenic
ACCTGAACTGTATCACATCG+GGG 0.703191 4.2:+9442396 None:intergenic
CATGGTGGATAATTGCTATG+GGG 0.706640 4.2:-9442896 MS.gene58103:CDS
TATGGTCATGATGAAGCTGG+GGG 0.710054 4.2:-9444531 MS.gene58103:CDS
AGGCATTGAACCTCCCATGG+TGG 0.710958 4.2:-9442863 MS.gene58103:intron
AGTTTGATAAAGAATCCTGG+TGG 0.766897 4.2:-9442743 MS.gene58103:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTATTCATTTACAAAA+CGG + chr4.2:9442049-9442068 None:intergenic 10.0%
!! ATATTAAGTTACTTATTAAT+AGG - chr4.2:9442869-9442888 MS.gene58103:CDS 10.0%
!! TATTAAGTTACTTATTAATA+GGG - chr4.2:9442870-9442889 MS.gene58103:CDS 10.0%
!!! ATTTTAGGTATTTATTTTTT+GGG - chr4.2:9442067-9442086 MS.gene58103:CDS 10.0%
!!! TATTTTAGGTATTTATTTTT+TGG - chr4.2:9442066-9442085 MS.gene58103:intron 10.0%
!!! TGTAAATGAATAATTATTTT+AGG - chr4.2:9442052-9442071 MS.gene58103:intron 10.0%
!!! TTTAAAGTTAATATTATTCA+AGG - chr4.2:9443902-9443921 MS.gene58103:intron 10.0%
!!! TTTTAATTTTGATTTTAAGT+TGG - chr4.2:9444964-9444983 MS.gene58103:intron 10.0%
!! AACTTAATATAAAGAAAACA+GGG + chr4.2:9442859-9442878 None:intergenic 15.0%
!! ATAGAATATTAGAAGAAAAA+AGG + chr4.2:9443395-9443414 None:intergenic 15.0%
!! ATTAAGTTACTTATTAATAG+GGG - chr4.2:9442871-9442890 MS.gene58103:CDS 15.0%
!! TAACTTAATATAAAGAAAAC+AGG + chr4.2:9442860-9442879 None:intergenic 15.0%
!! TAGAATATTAGAAGAAAAAA+GGG + chr4.2:9443394-9443413 None:intergenic 15.0%
!! TTCTAATAAAATGATAAATC+TGG + chr4.2:9444749-9444768 None:intergenic 15.0%
!!! AAAACATAATCAATTTGTTT+AGG + chr4.2:9445270-9445289 None:intergenic 15.0%
!!! AAACATAATCAATTTGTTTA+GGG + chr4.2:9445269-9445288 None:intergenic 15.0%
!!! ATACATTTTTTGCTTATATT+TGG - chr4.2:9444772-9444791 MS.gene58103:intron 15.0%
!!! TAAACAAATTGATTATGTTT+TGG - chr4.2:9445269-9445288 MS.gene58103:intron 15.0%
!!! TTCTGTTCTTTAATATTTTT+AGG + chr4.2:9444196-9444215 None:intergenic 15.0%
!! AATAAGCTAAAAATAGCTTA+TGG - chr4.2:9442227-9442246 MS.gene58103:intron 20.0%
!! AATACTAACAATGTTAACAT+TGG - chr4.2:9442981-9443000 MS.gene58103:intron 20.0%
!! ATCAAAGAGTTATTAATATC+TGG + chr4.2:9445338-9445357 None:intergenic 20.0%
!! ATTAACAAAACAACCAATTA+GGG + chr4.2:9442590-9442609 None:intergenic 20.0%
!! CAAAATTAAAAATCAGATAC+AGG + chr4.2:9444955-9444974 None:intergenic 20.0%
!! GTAATATTGAACATCATTTA+AGG + chr4.2:9445296-9445315 None:intergenic 20.0%
!! TAACTTATAATCAATTCTGA+AGG - chr4.2:9443175-9443194 MS.gene58103:intron 20.0%
!! TATAACTTGAAGCTATAATT+TGG + chr4.2:9443157-9443176 None:intergenic 20.0%
!! TATTAAAGAACAGAAAATAG+TGG - chr4.2:9444201-9444220 MS.gene58103:intron 20.0%
!! TTTGTGATCAGAAAAATTAT+AGG + chr4.2:9444309-9444328 None:intergenic 20.0%
!!! ATTTTCTGTATTCTTTACAA+GGG - chr4.2:9444802-9444821 MS.gene58103:intron 20.0%
!!! TAATATTTTTAGGTCACAAA+AGG + chr4.2:9444186-9444205 None:intergenic 20.0%
!!! TTTTTTATCAACAGAATTAC+TGG - chr4.2:9444132-9444151 MS.gene58103:intron 20.0%
! AAACATTGGATATATAAGAG+AGG - chr4.2:9442406-9442425 MS.gene58103:CDS 25.0%
! AACATTGGATATATAAGAGA+GGG - chr4.2:9442407-9442426 MS.gene58103:CDS 25.0%
! AAGAAATAATCCCTGAAAAA+AGG + chr4.2:9444693-9444712 None:intergenic 25.0%
! AAGAAATATTAGTAGCATAC+CGG + chr4.2:9443629-9443648 None:intergenic 25.0%
! AAGAGTTATTAATATCTGGT+AGG + chr4.2:9445334-9445353 None:intergenic 25.0%
! ACATTGTTAGTATTATATGC+TGG + chr4.2:9442975-9442994 None:intergenic 25.0%
! AGCAATAGTATACTATATAC+AGG - chr4.2:9445484-9445503 MS.gene58103:intron 25.0%
! CATTAACAAAACAACCAATT+AGG + chr4.2:9442591-9442610 None:intergenic 25.0%
! CATTGGCGATTTAAATAAAA+AGG - chr4.2:9442998-9443017 MS.gene58103:intron 25.0%
! CATTGTTAGTATTATATGCT+GGG + chr4.2:9442974-9442993 None:intergenic 25.0%
! TATAGCTTCTACTAGTATTA+TGG + chr4.2:9444010-9444029 None:intergenic 25.0%
! TTATCTATTAGCATAAGCAT+TGG + chr4.2:9442296-9442315 None:intergenic 25.0%
! TTGAATATGTAACTGGAATA+AGG - chr4.2:9443468-9443487 MS.gene58103:CDS 25.0%
!! AGAAGCTATATTGATTGTTA+GGG - chr4.2:9444020-9444039 MS.gene58103:intron 25.0%
!! ATTATTTCTTTCACCTCAAA+TGG - chr4.2:9444703-9444722 MS.gene58103:intron 25.0%
!! GATTTTCTGTATTCTTTACA+AGG - chr4.2:9444801-9444820 MS.gene58103:intron 25.0%
!! TAGAAGCTATATTGATTGTT+AGG - chr4.2:9444019-9444038 MS.gene58103:intron 25.0%
!! TATTATGGACTTTTAGATCA+GGG + chr4.2:9443995-9444014 None:intergenic 25.0%
AATGGTAGATGTTGTTGTAA+TGG + chr4.2:9441753-9441772 None:intergenic 30.0%
AATTAAGGAGTGAAGTGATA+AGG - chr4.2:9442926-9442945 MS.gene58103:intron 30.0%
ACACATTAGAGGAAGTAATT+GGG - chr4.2:9443543-9443562 MS.gene58103:CDS 30.0%
ACATTGGATATATAAGAGAG+GGG - chr4.2:9442408-9442427 MS.gene58103:CDS 30.0%
ACTTATTAATAGGGGATATG+AGG - chr4.2:9442879-9442898 MS.gene58103:CDS 30.0%
AGTTTGAGTGTTAATGACAT+AGG - chr4.2:9443810-9443829 MS.gene58103:intron 30.0%
ATAGTATGCAAGTGTATGTT+TGG + chr4.2:9443288-9443307 None:intergenic 30.0%
ATTAAGGAGTGAAGTGATAA+GGG - chr4.2:9442927-9442946 MS.gene58103:intron 30.0%
ATTAATATCTGGTAGGACTT+TGG + chr4.2:9445327-9445346 None:intergenic 30.0%
ATTCCAGTTACATATTCAAC+AGG + chr4.2:9443467-9443486 None:intergenic 30.0%
GAATAAAGCAATACATACTG+CGG + chr4.2:9444462-9444481 None:intergenic 30.0%
GCAACAAAATTAAGTCTGAA+TGG + chr4.2:9441875-9441894 None:intergenic 30.0%
GTTTGAGTGTTAATGACATA+GGG - chr4.2:9443811-9443830 MS.gene58103:intron 30.0%
TATCACATTTCTACATTCGT+CGG - chr4.2:9444495-9444514 MS.gene58103:CDS 30.0%
TCAAATAAGACAATCCAAAC+AGG - chr4.2:9442318-9442337 MS.gene58103:intron 30.0%
TTCCAGTTACATATTCAACA+GGG + chr4.2:9443466-9443485 None:intergenic 30.0%
! ACTTAATTTTGTTGCAATGC+AGG - chr4.2:9441880-9441899 MS.gene58103:CDS 30.0%
! AGATTCTTAGTTGTGCTTTT+TGG - chr4.2:9443858-9443877 MS.gene58103:intron 30.0%
! ATAAAGACCAATGTGTTGTT+AGG + chr4.2:9442530-9442549 None:intergenic 30.0%
! ATAAAGACCAATGTGTTGTT+GGG + chr4.2:9442530-9442549 None:intergenic 30.0%
! ATTATGTTTTCTCCCAAAAG+TGG - chr4.2:9443260-9443279 MS.gene58103:intron 30.0%
! ATTTTGCATCTGAACATTGA+AGG + chr4.2:9444355-9444374 None:intergenic 30.0%
! CTAATATAGCTATCAGCTTT+TGG - chr4.2:9443499-9443518 MS.gene58103:CDS 30.0%
! GTATGTATTGCTTTATTCCA+AGG - chr4.2:9444464-9444483 MS.gene58103:CDS 30.0%
! GTATTATGGACTTTTAGATC+AGG + chr4.2:9443996-9444015 None:intergenic 30.0%
! TAAAGACCAATGTGTTGTTA+GGG + chr4.2:9442644-9442663 None:intergenic 30.0%
! TTTTGCATCTGAACATTGAA+GGG + chr4.2:9444354-9444373 None:intergenic 30.0%
!! GCTGTTTTCATAAGCTATTT+TGG - chr4.2:9442192-9442211 MS.gene58103:intron 30.0%
!! TATGAGTGCACATTTTGTTT+CGG + chr4.2:9443760-9443779 None:intergenic 30.0%
!! TCATTTGTTTTCCAAATGCA+GGG - chr4.2:9445532-9445551 MS.gene58103:CDS 30.0%
!! TGTGAAAAGCTTTAAGAACA+CGG + chr4.2:9441976-9441995 None:intergenic 30.0%
!! TGTTGTTTCTATAAGCTCTT+CGG - chr4.2:9442260-9442279 MS.gene58103:intron 30.0%
!! TTCATTTGTTTTCCAAATGC+AGG - chr4.2:9445531-9445550 MS.gene58103:CDS 30.0%
!!! ATTCGTATTTTAACTCACAC+AGG + chr4.2:9443940-9443959 None:intergenic 30.0%
!!! CTTTTAAAGTATGAGCGTTA+GGG - chr4.2:9444238-9444257 MS.gene58103:intron 30.0%
AAACCTGAACTGTATCACAT+CGG + chr4.2:9444894-9444913 None:intergenic 35.0%
AATTGATCTTCAATGCCTGT+AGG - chr4.2:9445099-9445118 MS.gene58103:intron 35.0%
ACTAGTACTTCCATCAATGA+AGG + chr4.2:9445394-9445413 None:intergenic 35.0%
ACTTCCTCTAATGTGTCATA+TGG + chr4.2:9443539-9443558 None:intergenic 35.0%
AGAGGAAGTAATTGGGAAAA+GGG - chr4.2:9443550-9443569 MS.gene58103:CDS 35.0%
AGTTTGATAAAGAATCCTGG+TGG - chr4.2:9444542-9444561 MS.gene58103:CDS 35.0%
ATACTGAAAGAAACTCCTAC+GGG + chr4.2:9445045-9445064 None:intergenic 35.0%
ATATTATCGCATACCACCAT+GGG + chr4.2:9444438-9444457 None:intergenic 35.0%
ATTAATAGGGGATATGAGGT+TGG - chr4.2:9442883-9442902 MS.gene58103:CDS 35.0%
ATTTCACCCCAAAATCTTGA+AGG + chr4.2:9443595-9443614 None:intergenic 35.0%
CAATCTAAACATGCCCTAAT+TGG - chr4.2:9442574-9442593 MS.gene58103:CDS 35.0%
CATAAAGACCAATGTGTTGT+TGG + chr4.2:9442531-9442550 None:intergenic 35.0%
CATACTGAAAGAAACTCCTA+CGG + chr4.2:9445046-9445065 None:intergenic 35.0%
CTGAACATTGAAGGGTAAAA+AGG + chr4.2:9444346-9444365 None:intergenic 35.0%
GACACATTAGAGGAAGTAAT+TGG - chr4.2:9443542-9443561 MS.gene58103:CDS 35.0%
TAGAGGAAGTAATTGGGAAA+AGG - chr4.2:9443549-9443568 MS.gene58103:CDS 35.0%
TAGATTTCAGAACTTCTCCT+AGG + chr4.2:9445588-9445607 None:intergenic 35.0%
TCTAGAAAGAATGATAGCAC+AGG + chr4.2:9444927-9444946 None:intergenic 35.0%
TCTTTGATATCACTCTTCTC+AGG - chr4.2:9445350-9445369 MS.gene58103:CDS 35.0%
TGTTGCTGGGAAAAAGAAAT+TGG - chr4.2:9444589-9444608 MS.gene58103:intron 35.0%
TTAAGGAGTGAAGTGATAAG+GGG - chr4.2:9442928-9442947 MS.gene58103:intron 35.0%
TTCCCTGTTGAATATGTAAC+TGG - chr4.2:9443461-9443480 MS.gene58103:CDS 35.0%
TTCTGAATGCAATGCATCAA+CGG + chr4.2:9441915-9441934 None:intergenic 35.0%
TTCTTTCACCTCAAATGGTT+GGG - chr4.2:9444708-9444727 MS.gene58103:intron 35.0%
TTGAAGGGTAAAAAGGTTAC+AGG + chr4.2:9444339-9444358 None:intergenic 35.0%
TTTCACCCCAAAATCTTGAA+GGG + chr4.2:9443594-9443613 None:intergenic 35.0%
TTTCTTTCACCTCAAATGGT+TGG - chr4.2:9444707-9444726 MS.gene58103:intron 35.0%
! AATTTGTTTAGGGACTGTGA+AGG + chr4.2:9445259-9445278 None:intergenic 35.0%
! ACCTTAAGGCATTAGGTATA+TGG + chr4.2:9442436-9442455 None:intergenic 35.0%
! ACTCAAAACCTTAAGGCATT+AGG + chr4.2:9442443-9442462 None:intergenic 35.0%
! CAACAATTTCTGAAAAAGCC+TGG + chr4.2:9442795-9442814 None:intergenic 35.0%
! CCTTAAGGCATTAGGTATAT+GGG + chr4.2:9442435-9442454 None:intergenic 35.0%
! TAAAGACCAATGTGTTGTTG+GGG + chr4.2:9442529-9442548 None:intergenic 35.0%
! TGTTGTAATGGAGATTCGAA+CGG + chr4.2:9441741-9441760 None:intergenic 35.0%
!! ATGAGTGCACATTTTGTTTC+GGG + chr4.2:9443759-9443778 None:intergenic 35.0%
!! GTATGTTTGGTTCCACTTTT+GGG + chr4.2:9443275-9443294 None:intergenic 35.0%
!! GTGAAAAGCTTTAAGAACAC+GGG + chr4.2:9441975-9441994 None:intergenic 35.0%
!! TCATGGTGGATAATTGCTAT+GGG - chr4.2:9444388-9444407 MS.gene58103:intron 35.0%
!! TGTATGTTTGGTTCCACTTT+TGG + chr4.2:9443276-9443295 None:intergenic 35.0%
!!! ATCATGAGAGCCTTTTTTCA+GGG - chr4.2:9444680-9444699 MS.gene58103:intron 35.0%
!!! CAGGCTTTTTCAGAAATTGT+TGG - chr4.2:9442793-9442812 MS.gene58103:intron 35.0%
!!! GCTTTTAAAGTATGAGCGTT+AGG - chr4.2:9444237-9444256 MS.gene58103:intron 35.0%
!!! TAATGCCTTAAGGTTTTGAG+TGG - chr4.2:9442442-9442461 MS.gene58103:CDS 35.0%
!!! TATCATGAGAGCCTTTTTTC+AGG - chr4.2:9444679-9444698 MS.gene58103:intron 35.0%
AAAGGCTCTCATGATATCAC+CGG + chr4.2:9444675-9444694 None:intergenic 40.0%
AACCTGAACTGTATCACATC+GGG + chr4.2:9444893-9444912 None:intergenic 40.0%
AATGTGATACTGCACATCCT+TGG + chr4.2:9444484-9444503 None:intergenic 40.0%
ACTAGTGAGCTTTCATGTGA+TGG - chr4.2:9445408-9445427 MS.gene58103:intron 40.0%
ACTTGTCAACAGTTCTTCTC+AGG - chr4.2:9443312-9443331 MS.gene58103:intron 40.0%
AGAGGTCATGTGGTTATTCA+TGG - chr4.2:9443781-9443800 MS.gene58103:intron 40.0%
AGGTCACAAAAGGAATCAGT+TGG + chr4.2:9444176-9444195 None:intergenic 40.0%
AGTATTATATGCTGGGAGTG+TGG + chr4.2:9442967-9442986 None:intergenic 40.0%
ATCAGCTATTGTTCGTTCAC+AGG - chr4.2:9442822-9442841 MS.gene58103:intron 40.0%
CAAAATGTGCACTCATACAG+AGG - chr4.2:9443763-9443782 MS.gene58103:CDS 40.0%
CAACTATAGAGCTATACTGC+TGG + chr4.2:9443433-9443452 None:intergenic 40.0%
CATATTATCGCATACCACCA+TGG + chr4.2:9444439-9444458 None:intergenic 40.0%
CATCTCCACTCAAAACCTTA+AGG + chr4.2:9442450-9442469 None:intergenic 40.0%
CCCATATACCTAATGCCTTA+AGG - chr4.2:9442432-9442451 MS.gene58103:CDS 40.0%
GATGCAAAATCCTGAGTGTT+CGG - chr4.2:9444365-9444384 MS.gene58103:intron 40.0%
GATGTGGTGTCTAAGTTTCT+TGG - chr4.2:9442466-9442485 MS.gene58103:intron 40.0%
GATTATATCCCACATGGACT+CGG - chr4.2:9442375-9442394 MS.gene58103:intron 40.0%
GGCAAATAAAGCACATGTGA+TGG + chr4.2:9443346-9443365 None:intergenic 40.0%
GGCAGTTTGATAAAGAATCC+TGG - chr4.2:9444539-9444558 MS.gene58103:CDS 40.0%
GTCATACACCAAACCAATTG+CGG - chr4.2:9445192-9445211 MS.gene58103:intron 40.0%
GTGAGTGATTATATCCCACA+TGG - chr4.2:9442369-9442388 MS.gene58103:intron 40.0%
GTTATGGTCATGATGAAGCT+GGG - chr4.2:9442752-9442771 MS.gene58103:CDS 40.0%
TAATTGCTATGGGGAACTTG+TGG - chr4.2:9444398-9444417 MS.gene58103:intron 40.0%
TCATACACCAAACCAATTGC+GGG - chr4.2:9445193-9445212 MS.gene58103:intron 40.0%
TCCATCAATGAAGGTTCCAT+CGG + chr4.2:9445385-9445404 None:intergenic 40.0%
TCTTTCACCTCAAATGGTTG+GGG - chr4.2:9444709-9444728 MS.gene58103:intron 40.0%
TGCTCCATATGACACATTAG+AGG - chr4.2:9443532-9443551 MS.gene58103:CDS 40.0%
TGTTAATGCTGTCAGCACTT+TGG - chr4.2:9442718-9442737 MS.gene58103:CDS 40.0%
TTAACTCACACAGGTCACAA+TGG + chr4.2:9443931-9443950 None:intergenic 40.0%
TTATGGTCATGATGAAGCTG+GGG - chr4.2:9442753-9442772 MS.gene58103:CDS 40.0%
! AGAAAAGCTGTGGTTGATGT+GGG - chr4.2:9445008-9445027 MS.gene58103:intron 40.0%
! GTTGTAATGGAGATTCGAAC+GGG + chr4.2:9441740-9441759 None:intergenic 40.0%
! TAGAAAAGCTGTGGTTGATG+TGG - chr4.2:9445007-9445026 MS.gene58103:intron 40.0%
! TGGGTTCCCTTCAAGATTTT+GGG - chr4.2:9443585-9443604 MS.gene58103:intron 40.0%
! TTGGGTTCCCTTCAAGATTT+TGG - chr4.2:9443584-9443603 MS.gene58103:intron 40.0%
!! AAAAGCTTTAAGAACACGGG+TGG + chr4.2:9441972-9441991 None:intergenic 40.0%
!! CATGGTGGATAATTGCTATG+GGG - chr4.2:9444389-9444408 MS.gene58103:intron 40.0%
!! GTCATGGTGGATAATTGCTA+TGG - chr4.2:9444387-9444406 MS.gene58103:intron 40.0%
!! TGGCAGCGAAATTTTGTTTC+TGG - chr4.2:9444984-9445003 MS.gene58103:intron 40.0%
!! TGTTTCTGGTAGAAAAGCTG+TGG - chr4.2:9444998-9445017 MS.gene58103:intron 40.0%
!! TTTGTTTTCCAAATGCAGGG+TGG - chr4.2:9445535-9445554 MS.gene58103:CDS 40.0%
!!! ATTTTTTCATCAGCTTGCCG+AGG - chr4.2:9443692-9443711 MS.gene58103:CDS 40.0%
!!! TAAGGTTTTGAGTGGAGATG+TGG - chr4.2:9442450-9442469 MS.gene58103:CDS 40.0%
!!! TACAGCAGTCTTGTTTTGCA+TGG - chr4.2:9444105-9444124 MS.gene58103:intron 40.0%
AAAAAGCAAGGAGACGCTCA+CGG + chr4.2:9445141-9445160 None:intergenic 45.0%
AAAAGGGACTCTGGTGGTTT+GGG - chr4.2:9443566-9443585 MS.gene58103:CDS 45.0%
AAAAGGGTTACCTCATCTCC+TGG + chr4.2:9443378-9443397 None:intergenic 45.0%
AAATCCTGAGTGTTCGGTCA+TGG - chr4.2:9444371-9444390 MS.gene58103:intron 45.0%
AAGGCTCTCATGATATCACC+GGG + chr4.2:9444674-9444693 None:intergenic 45.0%
AATGGTTGGGGAAGCAATCA+AGG - chr4.2:9444721-9444740 MS.gene58103:intron 45.0%
ACAGCAAATGGCTCTCTAAG+AGG + chr4.2:9445435-9445454 None:intergenic 45.0%
ACAGGCTCATCTCATTGTGT+TGG - chr4.2:9442336-9442355 MS.gene58103:intron 45.0%
ACATTTCTACATTCGTCGGC+AGG - chr4.2:9444499-9444518 MS.gene58103:CDS 45.0%
ACCTGAACTGTATCACATCG+GGG + chr4.2:9444892-9444911 None:intergenic 45.0%
ACTCGGAATGGAGGAAACAT+TGG - chr4.2:9442392-9442411 MS.gene58103:intron 45.0%
AGTAGCATACCGGAACTTCT+CGG + chr4.2:9443619-9443638 None:intergenic 45.0%
AGTGAAGTGATAAGGGGTTG+AGG - chr4.2:9442934-9442953 MS.gene58103:intron 45.0%
ATGCCAGAACTTCAGCAATC+AGG + chr4.2:9444834-9444853 None:intergenic 45.0%
ATGCGTAGGATAAGCAGAGA+AGG + chr4.2:9441717-9441736 None:intergenic 45.0%
ATTGCTTCCCCAACCATTTG+AGG + chr4.2:9444719-9444738 None:intergenic 45.0%
CACAATGAGATGAGCCTGTT+TGG + chr4.2:9442335-9442354 None:intergenic 45.0%
CAGAACTTCAGCAATCAGGA+AGG + chr4.2:9444830-9444849 None:intergenic 45.0%
CAGGCTCATCTCATTGTGTT+GGG - chr4.2:9442337-9442356 MS.gene58103:intron 45.0%
CATTTCTACATTCGTCGGCA+GGG - chr4.2:9444500-9444519 MS.gene58103:CDS 45.0%
CTGCTGTAGAGAGTTATCAG+TGG + chr4.2:9444093-9444112 None:intergenic 45.0%
CTTCCTGATTGCTGAAGTTC+TGG - chr4.2:9444828-9444847 MS.gene58103:intron 45.0%
GAACAGCCTCACAAAAAGCA+AGG + chr4.2:9445153-9445172 None:intergenic 45.0%
GCATTCAGAATTCAGAGCAG+TGG - chr4.2:9441925-9441944 MS.gene58103:intron 45.0%
GCCTGGCAAAATACAGCAAA+TGG + chr4.2:9445447-9445466 None:intergenic 45.0%
GGTGAAATACCGAGAAGTTC+CGG - chr4.2:9443607-9443626 MS.gene58103:intron 45.0%
GGTTATGGTCATGATGAAGC+TGG - chr4.2:9442751-9442770 MS.gene58103:CDS 45.0%
GTAATTGGGAAAAGGGACTC+TGG - chr4.2:9443557-9443576 MS.gene58103:CDS 45.0%
GTGAAGTGATAAGGGGTTGA+GGG - chr4.2:9442935-9442954 MS.gene58103:intron 45.0%
GTGGTGTCTAAGTTTCTTGG+TGG - chr4.2:9442469-9442488 MS.gene58103:intron 45.0%
TAATGCTGTCAGCACTTTGG+TGG - chr4.2:9442721-9442740 MS.gene58103:CDS 45.0%
TATCAATCCCTTCGTTCCAG+AGG - chr4.2:9441799-9441818 MS.gene58103:intron 45.0%
TATGGTCATGATGAAGCTGG+GGG - chr4.2:9442754-9442773 MS.gene58103:CDS 45.0%
TCTCAGGTTATCTTTGCCGA+TGG - chr4.2:9445366-9445385 MS.gene58103:CDS 45.0%
TGATGCAAAACCAACATGCC+TGG + chr4.2:9445464-9445483 None:intergenic 45.0%
TGGCACTCATTGGACTCAAT+GGG - chr4.2:9445555-9445574 MS.gene58103:CDS 45.0%
TGGCTGAAGTAGGGGAATTA+AGG - chr4.2:9442911-9442930 MS.gene58103:CDS 45.0%
TTCCAAGTTGTACAGCCTAC+AGG + chr4.2:9445117-9445136 None:intergenic 45.0%
! AATGTGTTGTTAGGGAGTCC+GGG + chr4.2:9442636-9442655 None:intergenic 45.0%
! CAATGTGTTGTTAGGGAGTC+CGG + chr4.2:9442637-9442656 None:intergenic 45.0%
! CTGTATTTTGCCAGGCATGT+TGG - chr4.2:9445451-9445470 MS.gene58103:intron 45.0%
! GCTGAAGTTCTGGCATCTAA+GGG - chr4.2:9444838-9444857 MS.gene58103:intron 45.0%
! GCTTTTCACAATGCTCGACT+TGG - chr4.2:9441986-9442005 MS.gene58103:intron 45.0%
! GGGTTCCCTTCAAGATTTTG+GGG - chr4.2:9443586-9443605 MS.gene58103:intron 45.0%
! TAGGGGATATGAGGTTGGTT+TGG - chr4.2:9442888-9442907 MS.gene58103:CDS 45.0%
! TATCAGCTTTTGGCAGTTGC+TGG - chr4.2:9443509-9443528 MS.gene58103:CDS 45.0%
! TCTGGAACGAAGGGATTGAT+AGG + chr4.2:9441800-9441819 None:intergenic 45.0%
! TGCTGAAGTTCTGGCATCTA+AGG - chr4.2:9444837-9444856 MS.gene58103:intron 45.0%
!! GTGCTTTATTTGCCCTCTTG+AGG - chr4.2:9443352-9443371 MS.gene58103:intron 45.0%
!! TTGGTTTGGTGGCTGAAGTA+GGG - chr4.2:9442902-9442921 MS.gene58103:CDS 45.0%
!! TTTGGTGGTTGCACTGGTTA+TGG - chr4.2:9442736-9442755 MS.gene58103:CDS 45.0%
!!! GCCATTTGCTGTATTTTGCC+AGG - chr4.2:9445443-9445462 MS.gene58103:intron 45.0%
AAATGCAGGGTGGCACTCAT+TGG - chr4.2:9445545-9445564 MS.gene58103:CDS 50.0%
AATGAGTGCCACCCTGCATT+TGG + chr4.2:9445546-9445565 None:intergenic 50.0%
AGTGGTACCCGCAATTGGTT+TGG + chr4.2:9445203-9445222 None:intergenic 50.0%
ATTGGGAAAAGGGACTCTGG+TGG - chr4.2:9443560-9443579 MS.gene58103:CDS 50.0%
CACTCCTGGATATGCATCAG+AGG - chr4.2:9445219-9445238 MS.gene58103:intron 50.0%
CAGACCTCTGATGCATATCC+AGG + chr4.2:9445226-9445245 None:intergenic 50.0%
CCTGAACTGTATCACATCGG+GGG + chr4.2:9444891-9444910 None:intergenic 50.0%
CGGACTCCCTAACAACACAT+TGG - chr4.2:9442635-9442654 MS.gene58103:CDS 50.0%
CTCTGATGCATATCCAGGAG+TGG + chr4.2:9445221-9445240 None:intergenic 50.0%
GAAAAGGGACTCTGGTGGTT+TGG - chr4.2:9443565-9443584 MS.gene58103:CDS 50.0%
GATAGGAACAGAGAAGCGAG+AGG + chr4.2:9441783-9441802 None:intergenic 50.0%
GCACTCATACAGAGGTCATG+TGG - chr4.2:9443771-9443790 MS.gene58103:CDS 50.0%
GCCGATGGAACCTTCATTGA+TGG - chr4.2:9445381-9445400 MS.gene58103:CDS 50.0%
GGCACTCATTGGACTCAATG+GGG - chr4.2:9445556-9445575 MS.gene58103:CDS 50.0%
GTGGCACTCATTGGACTCAA+TGG - chr4.2:9445554-9445573 MS.gene58103:CDS 50.0%
GTTCAGAGAAGCTCTCCTGT+GGG - chr4.2:9445169-9445188 MS.gene58103:intron 50.0%
TATCCCACATGGACTCGGAA+TGG - chr4.2:9442380-9442399 MS.gene58103:intron 50.0%
TGCCTGTAGGCTGTACAACT+TGG - chr4.2:9445112-9445131 MS.gene58103:intron 50.0%
TGCTATGGGGAACTTGTGGA+AGG - chr4.2:9444402-9444421 MS.gene58103:intron 50.0%
TGGGCAAAAACTTGTCCCGT+AGG - chr4.2:9445027-9445046 MS.gene58103:intron 50.0%
TGTTCAGAGAAGCTCTCCTG+TGG - chr4.2:9445168-9445187 MS.gene58103:intron 50.0%
TTATCGCATACCACCATGGG+AGG + chr4.2:9444435-9444454 None:intergenic 50.0%
TTATTTGCCCTCTTGAGGCC+AGG - chr4.2:9443357-9443376 MS.gene58103:intron 50.0%
TTCAGAGAAGCTCTCCTGTG+GGG - chr4.2:9445170-9445189 MS.gene58103:intron 50.0%
TTTCATCAGCTTGCCGAGGA+TGG - chr4.2:9443696-9443715 MS.gene58103:CDS 50.0%
! ATGTGTTGTTAGGGAGTCCG+GGG + chr4.2:9442635-9442654 None:intergenic 50.0%
! CAATGTGTTGTTGGGGAGTC+CGG + chr4.2:9442522-9442541 None:intergenic 50.0%
! GTGGATTGTGGTTCAACTCC+CGG - chr4.2:9444653-9444672 MS.gene58103:intron 50.0%
!! ACTCAATGGGGACTAGTCCT+AGG - chr4.2:9445568-9445587 MS.gene58103:CDS 50.0%
!! CATGTGGCGGATATGTTGCT+GGG - chr4.2:9444576-9444595 MS.gene58103:intron 50.0%
!! GGGATATGAGGTTGGTTTGG+TGG - chr4.2:9442891-9442910 MS.gene58103:CDS 50.0%
!! GTTGGTTTGGTGGCTGAAGT+AGG - chr4.2:9442901-9442920 MS.gene58103:CDS 50.0%
!! TGGTTTGGTGGCTGAAGTAG+GGG - chr4.2:9442903-9442922 MS.gene58103:CDS 50.0%
!!! GCGTCTCCTTGCTTTTTGTG+AGG - chr4.2:9445144-9445163 MS.gene58103:intron 50.0%
ACCACAATCCACACCAAGCC+CGG + chr4.2:9444645-9444664 None:intergenic 55.0%
CATGGAGCAATCGTTCCACC+AGG + chr4.2:9444560-9444579 None:intergenic 55.0%
CCAGCAACATATCCGCCACA+TGG + chr4.2:9444578-9444597 None:intergenic 55.0%
CCAGTCAAGTCCACCATCCT+CGG + chr4.2:9443712-9443731 None:intergenic 55.0%
CCCCCGATGTGATACAGTTC+AGG - chr4.2:9444888-9444907 MS.gene58103:intron 55.0%
CCTCCATTCCGAGTCCATGT+GGG + chr4.2:9442386-9442405 None:intergenic 55.0%
CGGACTCCCCAACAACACAT+TGG - chr4.2:9442520-9442539 MS.gene58103:intron 55.0%
CTCATCTCCTGGCCTCAAGA+GGG + chr4.2:9443367-9443386 None:intergenic 55.0%
GAAGAGTGAGCGAGTACCTC+TGG + chr4.2:9441818-9441837 None:intergenic 55.0%
GAGATTCGAACGGGATGCGT+AGG + chr4.2:9441731-9441750 None:intergenic 55.0%
GCAGGGTGCAGATTTGATGG+CGG - chr4.2:9444517-9444536 MS.gene58103:CDS 55.0%
GGAACGATTGCTCCATGTGG+CGG - chr4.2:9444563-9444582 MS.gene58103:intron 55.0%
GGTGGAACGATTGCTCCATG+TGG - chr4.2:9444560-9444579 MS.gene58103:intron 55.0%
GTTTAGCCCATTGCCGTCTC+CGG - chr4.2:9442500-9442519 MS.gene58103:intron 55.0%
TCCACCATGACCGAACACTC+AGG + chr4.2:9444378-9444397 None:intergenic 55.0%
TCCTCCATTCCGAGTCCATG+TGG + chr4.2:9442387-9442406 None:intergenic 55.0%
TCCTGAGTGTTCGGTCATGG+TGG - chr4.2:9444374-9444393 MS.gene58103:intron 55.0%
TCGGCAGGGTGCAGATTTGA+TGG - chr4.2:9444514-9444533 MS.gene58103:CDS 55.0%
TTTAACCCATTGCCGCTCCC+CGG - chr4.2:9442615-9442634 MS.gene58103:CDS 55.0%
! CAGCACTTTGGTGGTTGCAC+TGG - chr4.2:9442730-9442749 MS.gene58103:CDS 55.0%
! CAGGGTGCAGATTTGATGGC+GGG - chr4.2:9444518-9444537 MS.gene58103:CDS 55.0%
! GAAGCGAGAGGCATAGCGAA+TGG + chr4.2:9441771-9441790 None:intergenic 55.0%
!! AGCGAGTACCTCTGGAACGA+AGG + chr4.2:9441810-9441829 None:intergenic 55.0%
!! AGGCATTGAACCTCCCATGG+TGG - chr4.2:9444422-9444441 MS.gene58103:intron 55.0%
!! CCATGTGGCGGATATGTTGC+TGG - chr4.2:9444575-9444594 MS.gene58103:intron 55.0%
!! CGGCAATGGGCTAAACGTTC+AGG + chr4.2:9442496-9442515 None:intergenic 55.0%
!! GCGAGTACCTCTGGAACGAA+GGG + chr4.2:9441809-9441828 None:intergenic 55.0%
!! GGAAGGCATTGAACCTCCCA+TGG - chr4.2:9444419-9444438 MS.gene58103:intron 55.0%
!! GGTTTGGTGTATGACCCCAC+AGG + chr4.2:9445187-9445206 None:intergenic 55.0%
CATCAGCTTGCCGAGGATGG+TGG - chr4.2:9443699-9443718 MS.gene58103:CDS 60.0%
CCAATTGCGGGTACCACTCC+TGG - chr4.2:9445205-9445224 MS.gene58103:intron 60.0%
CCACAATCCACACCAAGCCC+GGG + chr4.2:9444644-9444663 None:intergenic 60.0%
CCAGGAGTGGTACCCGCAAT+TGG + chr4.2:9445208-9445227 None:intergenic 60.0%
CCCACATGGACTCGGAATGG+AGG - chr4.2:9442383-9442402 MS.gene58103:intron 60.0%
CCTCATCTCCTGGCCTCAAG+AGG + chr4.2:9443368-9443387 None:intergenic 60.0%
CCTCTTGAGGCCAGGAGATG+AGG - chr4.2:9443365-9443384 MS.gene58103:intron 60.0%
GGGACGTGAAGCTCTTGACC+AGG - chr4.2:9442774-9442793 MS.gene58103:intron 60.0%
GTTGTTGGGGAGTCCGGAGA+CGG + chr4.2:9442516-9442535 None:intergenic 60.0%
TATCACATCGGGGGACGCGA+GGG + chr4.2:9444882-9444901 None:intergenic 60.0%
TTGTTAGGGAGTCCGGGGAG+CGG + chr4.2:9442630-9442649 None:intergenic 60.0%
!! CCGAGGATGGTGGACTTGAC+TGG - chr4.2:9443709-9443728 MS.gene58103:CDS 60.0%
GGGAGTCCGGAGACGGCAAT+GGG + chr4.2:9442509-9442528 None:intergenic 65.0%
GTATCACATCGGGGGACGCG+AGG + chr4.2:9444883-9444902 None:intergenic 65.0%
!! CCCGGGCTTGGTGTGGATTG+TGG - chr4.2:9444641-9444660 MS.gene58103:intron 65.0%
CACCAAGCCCGGGCGCAGAA+AGG + chr4.2:9444634-9444653 None:intergenic 70.0%
GGAGTCCGGGGAGCGGCAAT+GGG + chr4.2:9442623-9442642 None:intergenic 70.0%
GGGGAGTCCGGAGACGGCAA+TGG + chr4.2:9442510-9442529 None:intergenic 70.0%
!! TTCTGCGCCCGGGCTTGGTG+TGG - chr4.2:9444634-9444653 MS.gene58103:intron 70.0%
CAGCGCGCCTTTCTGCGCCC+GGG - chr4.2:9444624-9444643 MS.gene58103:intron 75.0%
CATCGGGGGACGCGAGGGAG+TGG + chr4.2:9444877-9444896 None:intergenic 75.0%
CGCCTTTCTGCGCCCGGGCT+TGG - chr4.2:9444629-9444648 MS.gene58103:intron 75.0%
GCAGCGCGCCTTTCTGCGCC+CGG - chr4.2:9444623-9444642 MS.gene58103:intron 75.0%
GGGAGTCCGGGGAGCGGCAA+TGG + chr4.2:9442624-9442643 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 9441695 9445612 9441695 ID=MS.gene58103
chr4.2 mRNA 9441695 9445612 9441695 ID=MS.gene58103.t1;Parent=MS.gene58103
chr4.2 exon 9445487 9445612 9445487 ID=MS.gene58103.t1.exon1;Parent=MS.gene58103.t1
chr4.2 CDS 9445487 9445612 9445487 ID=cds.MS.gene58103.t1;Parent=MS.gene58103.t1
chr4.2 exon 9445292 9445405 9445292 ID=MS.gene58103.t1.exon2;Parent=MS.gene58103.t1
chr4.2 CDS 9445292 9445405 9445292 ID=cds.MS.gene58103.t1;Parent=MS.gene58103.t1
chr4.2 exon 9444464 9444574 9444464 ID=MS.gene58103.t1.exon3;Parent=MS.gene58103.t1
chr4.2 CDS 9444464 9444574 9444464 ID=cds.MS.gene58103.t1;Parent=MS.gene58103.t1
chr4.2 exon 9443921 9443983 9443921 ID=MS.gene58103.t1.exon4;Parent=MS.gene58103.t1
chr4.2 CDS 9443921 9443983 9443921 ID=cds.MS.gene58103.t1;Parent=MS.gene58103.t1
chr4.2 exon 9443679 9443792 9443679 ID=MS.gene58103.t1.exon5;Parent=MS.gene58103.t1
chr4.2 CDS 9443679 9443792 9443679 ID=cds.MS.gene58103.t1;Parent=MS.gene58103.t1
chr4.2 exon 9443453 9443602 9443453 ID=MS.gene58103.t1.exon6;Parent=MS.gene58103.t1
chr4.2 CDS 9443453 9443602 9443453 ID=cds.MS.gene58103.t1;Parent=MS.gene58103.t1
chr4.2 exon 9442864 9442941 9442864 ID=MS.gene58103.t1.exon7;Parent=MS.gene58103.t1
chr4.2 CDS 9442864 9442941 9442864 ID=cds.MS.gene58103.t1;Parent=MS.gene58103.t1
chr4.2 exon 9442565 9442786 9442565 ID=MS.gene58103.t1.exon8;Parent=MS.gene58103.t1
chr4.2 CDS 9442565 9442786 9442565 ID=cds.MS.gene58103.t1;Parent=MS.gene58103.t1
chr4.2 exon 9442398 9442484 9442398 ID=MS.gene58103.t1.exon9;Parent=MS.gene58103.t1
chr4.2 CDS 9442398 9442484 9442398 ID=cds.MS.gene58103.t1;Parent=MS.gene58103.t1
chr4.2 exon 9442067 9442186 9442067 ID=MS.gene58103.t1.exon10;Parent=MS.gene58103.t1
chr4.2 CDS 9442067 9442186 9442067 ID=cds.MS.gene58103.t1;Parent=MS.gene58103.t1
chr4.2 exon 9441843 9441935 9441843 ID=MS.gene58103.t1.exon11;Parent=MS.gene58103.t1
chr4.2 CDS 9441843 9441935 9441843 ID=cds.MS.gene58103.t1;Parent=MS.gene58103.t1
chr4.2 exon 9441695 9441754 9441695 ID=MS.gene58103.t1.exon12;Parent=MS.gene58103.t1
chr4.2 CDS 9441695 9441754 9441695 ID=cds.MS.gene58103.t1;Parent=MS.gene58103.t1
Gene Sequence

>MS.gene58103

ATGTTGAGCATAACGTGCGCCTTCTCTGCTTATCCTACGCATCCCGTTCGAATCTCCATTACAACAACATCTACCATTCGCTATGCCTCTCGCTTCTCTGTTCCTATCAATCCCTTCGTTCCAGAGGTACTCGCTCACTCTTCTATTTTCTCACTTCATAATTTCGCTGCTTCAAAACCATTCAGACTTAATTTTGTTGCAATGCAGGTTATTGAAGCCGTTGATGCATTGCATTCAGAATTCAGAGCAGTGGATAATTTAGTTGCATACAATACCACCCGTGTTCTTAAAGCTTTTCACAATGCTCGACTTGGTTCTCATGTATGTAACTATGTGCTTTCATTTCGATAACCGTTTTGTAAATGAATAATTATTTTAGGTATTTATTTTTTGGGATAAACTACTTAATTATGCATTTATCGTATAAGTGTTTATGTATAAGTTGTTTCTATAACTAAAGATAAAATCAAGTCAAATTCTTTTCATATAAGCTATAAGCTGTTTTCATAAGCTATTTTGGAGAGCATATGAAAATAAGCTAAAAATAGCTTATGGACATGTTATATGTTGTTTCTATAAGCTCTTCGGAACAGTCTTACCAATGCTTATGCTAATAGATAAGTTCAAATAAGACAATCCAAACAGGCTCATCTCATTGTGTTGGGAAATCAAGTGTGAGTGATTATATCCCACATGGACTCGGAATGGAGGAAACATTGGATATATAAGAGAGGGGACCCATATACCTAATGCCTTAAGGTTTTGAGTGGAGATGTGGTGTCTAAGTTTCTTGGTGGTCCTGAACGTTTAGCCCATTGCCGTCTCCGGACTCCCCAACAACACATTGGTCTTTATGCTAGTAAATAAGCTCAAATAAGTCAATCTAAACATGCCCTAATTGGTTGTTTTGTTAATGAACGTTTAACCCATTGCCGCTCCCCGGACTCCCTAACAACACATTGGTCTTTATGCTAGTAAATAAGCTCAAATAAGTCAATCTAAACATGCCCTAATTGGTTGTTTTGTTAATGCTGTCAGCACTTTGGTGGTTGCACTGGTTATGGTCATGATGAAGCTGGGGGACGTGAAGCTCTTGACCAGGCTTTTTCAGAAATTGTTGGAGCAGAATCAGCTATTGTTCGTTCACAGGTTCTTAACTTTCCCTGTTTTCTTTATATTAAGTTACTTATTAATAGGGGATATGAGGTTGGTTTGGTGGCTGAAGTAGGGGAATTAAGGAGTGAAGTGATAAGGGGTTGAGGGTTTGAACCACACTCCCAGCATATAATACTAACAATGTTAACATTGGCGATTTAAATAAAAAGGTTACTTTTTAATGTTCTCATTGAATATGACGAAAAGTGAGTTCAATGTAAAGTGATTTATGTTTGATACATTTATATAAAAATGCGCTGAACAATAAATTTAAAGCTAAAAATCAGCTATAGAGATGTAAGCTCCAAATTATAGCTTCAAGTTATAACTTATAATCAATTCTGAAGGCAAAATCAATTCTATTCAAGAAAATTCAAACATGTCAAAATCAATTCTACACTTCTAAGTCAATTATGTTTTCTCCCAAAAGTGGAACCAAACATACACTTGCATACTATTCTCACTTGTCAACAGTTCTTCTCAGGTACTCATGCCATCACATGTGCTTTATTTGCCCTCTTGAGGCCAGGAGATGAGGTAACCCTTTTTTCTTCTAATATTCTATGCTTTTCATTCTTTACCAGCAGTATAGCTCTATAGTTGTAGAATGTTTCCCTGTTGAATATGTAACTGGAATAAGGTTTTTAGACTAATATAGCTATCAGCTTTTGGCAGTTGCTGGTGCTCCATATGACACATTAGAGGAAGTAATTGGGAAAAGGGACTCTGGTGGTTTGGGTTCCCTTCAAGATTTTGGGGTGAAATACCGAGAAGTTCCGGTATGCTACTAATATTTCTTTCTAGATCTAATTCATTAGTATTCTATGTGACTCTTCTATGACATTTTTTCATCAGCTTGCCGAGGATGGTGGACTTGACTGGAATGCACTGATGCATGCTGTCAAACCCGAAACAAAATGTGCACTCATACAGAGGTCATGTGGTTATTCATGGCGTCAGAGTTTGAGTGTTAATGACATAGGGAGAGCGATACAAATTATCAAAGTAAGATTCTTAGTTGTGCTTTTTGGTTTGATACTGTAACATTATGTTTTAAAGTTAATATTATTCAAGGCAACCATTGTGACCTGTGTGAGTTAAAATACGAATTGCTCACATAATTTGTAGTTATTGTTTAATTTCCCTGATCTAAAAGTCCATAATACTAGTAGAAGCTATATTGATTGTTAGGGCATGCTCTATAATAATATTTTAGCTTCTATGCTTTTGTTAGATTAAACCACTGATAACTCTCTACAGCAGTCTTGTTTTGCATGGCATTTTTTTTATCAACAGAATTACTGGAATACTACTAGCACAAATCCAACTGATTCCTTTTGTGACCTAAAAATATTAAAGAACAGAAAATAGTGGCATATAGACAGATGCTTTTAAAGTATGAGCGTTAGGGTTTTACACTCAAAATATATTAAACAAATGCTTACTGTCTTCAAAACCTATAATTTTTCTGATCACAAAATCTTCACCTGTAACCTTTTTACCCTTCAATGTTCAGATGCAAAATCCTGAGTGTTCGGTCATGGTGGATAATTGCTATGGGGAACTTGTGGAAGGCATTGAACCTCCCATGGTGGTATGCGATAATATGCCGCAGTATGTATTGCTTTATTCCAAGGATGTGCAGTATCACATTTCTACATTCGTCGGCAGGGTGCAGATTTGATGGCGGGCAGTTTGATAAAGAATCCTGGTGGAACGATTGCTCCATGTGGCGGATATGTTGCTGGGAAAAAGAAATTGGTTGAAGCAGCTGCAGCGCGCCTTTCTGCGCCCGGGCTTGGTGTGGATTGTGGTTCAACTCCCGGTGATATCATGAGAGCCTTTTTTCAGGGATTATTTCTTTCACCTCAAATGGTTGGGGAAGCAATCAAGGTACCAGATTTATCATTTTATTAGAAGATATACATTTTTTGCTTATATTTGGTAGTGAGATTTTCTGTATTCTTTACAAGGGTTCCTTCCTGATTGCTGAAGTTCTGGCATCTAAGGGTTATAAAGTGCAGCCACTCCCTCGCGTCCCCCGATGTGATACAGTTCAGGTTTTCTTGCTGAGCCTGTGCTATCATTCTTTCTAGATGAAACCTGTATCTGATTTTTAATTTTGATTTTAAGTTGGCAGCGAAATTTTGTTTCTGGTAGAAAAGCTGTGGTTGATGTGGGCAAAAACTTGTCCCGTAGGAGTTTCTTTCAGTATGTATATAGATGATAATTATTCAGATCATGAGTAAAATTGATCTTCAATGCCTGTAGGCTGTACAACTTGGAAGCCGTGAGCGTCTCCTTGCTTTTTGTGAGGCTGTTCAGAGAAGCTCTCCTGTGGGGTCATACACCAAACCAATTGCGGGTACCACTCCTGGATATGCATCAGAGGTCTGCTCTGATTAACCTTCACAGTCCCTAAACAAATTGATTATGTTTTGGTCCTTAAATGATGTTCAATATTACTTTGATATCCAAAGTCCTACCAGATATTAATAACTCTTTGATATCACTCTTCTCAGGTTATCTTTGCCGATGGAACCTTCATTGATGGAAGTACTAGTGAGCTTTCATGTGATGGACCTCTTAGAGAGCCATTTGCTGTATTTTGCCAGGCATGTTGGTTTTGCATCAAGCAATAGTATACTATATACAGGTATGATTCACTATTACATATTAACTTCATTTGTTTTCCAAATGCAGGGTGGCACTCATTGGACTCAATGGGGACTAGTCCTAGGAGAAGTTCTGAAATCTATATGA

Protein sequence

>MS.gene58103.t1

MLSITCAFSAYPTHPVRISITTTSTIRYASRFSVPINPFVPEVIEAVDALHSEFRAVDNLVAYNTTRVLKAFHNARLGSHHFGGCTGYGHDEAGGREALDQAFSEIVGAESAIVRSQFFSGTHAITCALFALLRPGDELLAVAGAPYDTLEEVIGKRDSGGLGSLQDFGVKYREVPLAEDGGLDWNALMHAVKPETKCALIQRSCGYSWRQSLSVNDIGRAIQIIKMQNPECSVMVDNCYGELVEGIEPPMVGADLMAGSLIKNPGGTIAPCGGYVAGKKKLVEAAAARLSAPGLGVDCGSTPGDIMRAFFQGLFLSPQMVGEAIKGSFLIAEVLASKGYKVQPLPRVPRCDTVQAVQLGSRERLLAFCEAVQRSSPVGSYTKPIAGTTPGYASEVIFADGTFIDGSTSELSCDGPLREPFAVFCQGGTHWTQWGLVLGEVLKSI