AlfalfaGEDB | MS.gene60631

M. sativa cultivar XinJiangDaYe / MS.gene60631

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60631.t1	XP_003592178.1	87.3	332	16	5	1	325	1	313	1.60E-144	522.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60631.t1	Q9FLX4	31.8	321	155	12	1	305	1	273	1.2e-20	102.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60631.t1	G7IDX6	87.3	332	16	5	1	325	1	313	1.1e-144	522.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene60631	0.822359	2.47E-53	-1.69E-46
MS.gene049254	MS.gene60631	0.807168	5.77E-50	-1.69E-46
MS.gene049404	MS.gene60631	0.811869	5.64E-51	-1.69E-46
MS.gene049435	MS.gene60631	0.801853	7.40E-49	-1.69E-46
MS.gene049873	MS.gene60631	0.803724	3.04E-49	-1.69E-46
MS.gene050119	MS.gene60631	0.834116	3.61E-56	-1.69E-46
MS.gene05016	MS.gene60631	0.820611	6.26E-53	-1.69E-46
MS.gene050355	MS.gene60631	0.806829	6.80E-50	-1.69E-46
MS.gene050442	MS.gene60631	0.815008	1.15E-51	-1.69E-46
MS.gene05045	MS.gene60631	0.802893	4.52E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60631.t1	MTR_1g099550	87.349	332	16	5	1	325	1	313	0.0	563
MS.gene60631.t1	MTR_8g099045	30.447	358	164	13	1	295	1	336	3.09e-30	118
MS.gene60631.t1	MTR_5g009870	40.444	225	93	12	104	300	159	370	5.09e-30	118

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60631.t1	AT5G52870	33.546	313	147	11	1	299	1	266	1.41e-33	125
MS.gene60631.t1	AT5G52870	33.546	313	147	11	1	299	1	266	1.95e-33	125
MS.gene60631.t1	AT1G64080	49.206	126	45	4	193	300	266	390	7.48e-22	95.5

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Find 58 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGGTGACGAAGCATTT+GGG	0.526267	1.2:-69723188	MS.gene60631:CDS
AAGAGATCCTTCAATTCCAG+AGG	0.646564	1.2:-69723056	MS.gene60631:intron
AAGATGAGGAACAGTGATGT+TGG	0.527025	1.2:+69723889	None:intergenic
AAGGTAAAGATTCTGAAACT+TGG	0.555444	1.2:+69723593	None:intergenic
AAGGTGAAATTCTCCGGCGA+GGG	0.550532	1.2:-69723296	MS.gene60631:CDS
AATTCGGAATCAAGGAACAG+AGG	0.681760	1.2:-69723414	MS.gene60631:CDS
ACGCTGTTGCAGCAACATGA+TGG	0.598349	1.2:-69723104	MS.gene60631:CDS
AGAAGTGAAATGGGTGATTG+TGG	0.566819	1.2:+69723626	None:intergenic
AGCTACCGTCATCCCCTCGC+CGG	0.534216	1.2:+69723283	None:intergenic
AGGTCGTCGGGTACGGTGGC+CGG	0.454518	1.2:-69723158	MS.gene60631:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATTAAGCCTCTTTATGTTA+AGG	-	chr1.2:69723459-69723478	MS.gene60631:CDS	30.0%
TAGTTTCACAGAAAAAACCT+TGG	+	chr1.2:69723293-69723312	None:intergenic	30.0%
TTCGAAACCTTAACATAAAG+AGG	+	chr1.2:69723469-69723488	None:intergenic	30.0%
TTTATGTTAAGGTTTCGAAG+AGG	-	chr1.2:69723470-69723489	MS.gene60631:CDS	30.0%
CTTTAAACTTCCTCAAGTTC+TGG	-	chr1.2:69722867-69722886	MS.gene60631:CDS	35.0%
GAATCAGAAGAAAGAAACCA+AGG	-	chr1.2:69723273-69723292	MS.gene60631:CDS	35.0%
GATTCTTCAATGGATGTTGT+TGG	-	chr1.2:69723886-69723905	MS.gene60631:CDS	35.0%
GCTGATCTTAGAAGTGAAAT+GGG	+	chr1.2:69723184-69723203	None:intergenic	35.0%
TGCTGATCTTAGAAGTGAAA+TGG	+	chr1.2:69723185-69723204	None:intergenic	35.0%
TTCAGAAAACAGAGAAGAAC+TGG	-	chr1.2:69723226-69723245	MS.gene60631:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	69722860	69723960	69722860	ID=MS.gene60631
chr1.2	mRNA	69722860	69723960	69722860	ID=MS.gene60631.t1;Parent=MS.gene60631
chr1.2	exon	69723057	69723960	69723057	ID=MS.gene60631.t1.exon1;Parent=MS.gene60631.t1
chr1.2	CDS	69723057	69723960	69723057	ID=cds.MS.gene60631.t1;Parent=MS.gene60631.t1
chr1.2	exon	69722860	69722933	69722860	ID=MS.gene60631.t1.exon2;Parent=MS.gene60631.t1
chr1.2	CDS	69722860	69722933	69722860	ID=cds.MS.gene60631.t1;Parent=MS.gene60631.t1

Gene Sequence

>MS.gene60631

ATGGATGCTTTAAACTTCCTCAAGTTCTGGAAGAACAACACAACAACCTCCAACATCACTGTTCCTCATCTTGTTGTAGAAACAGACAGCGAATCAGACGAAGATGACTCATTCTTCGACTTAGAACTCTCCATGAATGATTTCGACAACAAAACCAATGACGACCCACATGTCCAAACCAAAACTCACAAAACAGAAAACATTACCTACGAGAAAACTGAAACTAATGTTCCTCAAAAAACAACACTTCTTATGTCTCCAAACGAACCTATCTCAAAAAGAAAAGTGCTTCCAATTGAACCCATTTCAAAACCACAATCACCCATTTCACTTCTAAGATCAGCACCAAGTTTCAGAATCTTTACCTTCAGAAAACAGAGAAGAACTGGTTCTGAAAAAACAGAGTGTGAAAAGAATCAGAAGAAAGAAACCAAGGTTTTTTCTGTGAAACTAAATATAGAAGAAGATTTTCATTCTACTCCAATGCTTAGTAGAGAGAACAGCACAAGAAACTTTGGTAGCAAAATTCGGAATCAAGGAACAGAGGAACCCAAAACAGAGCGAGTTTCAAAGGAGATTTTGCAGAAATATTTGAAACTGATTAAGCCTCTTTATGTTAAGGTTTCGAAGAGGTACGGTGATAAGGTGAAATTCTCCGGCGAGGGGATGACGGTAGCTGCTTCGCCGTCGTCGTCACCGGCGGTTGGCTCTTTGAGGAAAGAGAAACACGGGAGTTTTCCGGCTGGGATGAAAGTGGTGACGAAGCATTTGGGTAAGAGTAGGTCGTCGGGTACGGTGGCCGGAGCTTGTTCTCCGGCGAACAGGAGTGATGATACGCTGTTGCAGCAACATGATGGAATTCAAAGTGCTATTCTTCATTGCAAGAGATCCTTCAATTCCAGAGGTAAAATTTGTTTCACAAATAATATTTTTTTTATTCATATGCTAAATATGATTATTTTTGAAAGGATATGCTAAATATGATTTGTAATGTCAATTAATTATAGTTAATTTTTATAATTTTCAGATTCTTCAATGGATGTTGTTGGTGGTGATGGATCAATGTATTCAACAAGAAATTCTTTTGAGGATGAAGTGTGA

Protein sequence

>MS.gene60631.t1

MDALNFLKFWKNNTTTSNITVPHLVVETDSESDEDDSFFDLELSMNDFDNKTNDDPHVQTKTHKTENITYEKTETNVPQKTTLLMSPNEPISKRKVLPIEPISKPQSPISLLRSAPSFRIFTFRKQRRTGSEKTECEKNQKKETKVFSVKLNIEEDFHSTPMLSRENSTRNFGSKIRNQGTEEPKTERVSKEILQKYLKLIKPLYVKVSKRYGDKVKFSGEGMTVAASPSSSPAVGSLRKEKHGSFPAGMKVVTKHLGKSRSSGTVAGACSPANRSDDTLLQQHDGIQSAILHCKRSFNSRDSSMDVVGGDGSMYSTRNSFEDEV