Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61542.t1 | XP_003597891.1 | 93.4 | 106 | 4 | 1 | 1 | 103 | 19 | 124 | 6.10E-50 | 206.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61542.t1 | C0HLF1 | 28.6 | 105 | 71 | 2 | 1 | 101 | 20 | 124 | 5.5e-07 | 55.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61542.t1 | Q2HUA7 | 93.4 | 106 | 4 | 1 | 1 | 103 | 19 | 124 | 4.4e-50 | 206.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049756 | MS.gene61542 | 0.811177 | 7.98E-51 | -1.69E-46 |
| MS.gene050277 | MS.gene61542 | 0.835542 | 1.58E-56 | -1.69E-46 |
| MS.gene050317 | MS.gene61542 | 0.827753 | 1.31E-54 | -1.69E-46 |
| MS.gene050320 | MS.gene61542 | 0.808649 | 2.79E-50 | -1.69E-46 |
| MS.gene050752 | MS.gene61542 | 0.816488 | 5.39E-52 | -1.69E-46 |
| MS.gene050838 | MS.gene61542 | 0.805024 | 1.63E-49 | -1.69E-46 |
| MS.gene051063 | MS.gene61542 | 0.803267 | 3.78E-49 | -1.69E-46 |
| MS.gene051243 | MS.gene61542 | 0.808196 | 3.49E-50 | -1.69E-46 |
| MS.gene051245 | MS.gene61542 | 0.868449 | 6.48E-66 | -1.69E-46 |
| MS.gene051746 | MS.gene61542 | 0.803842 | 2.87E-49 | -1.69E-46 |
| MS.gene051748 | MS.gene61542 | 0.818607 | 1.79E-52 | -1.69E-46 |
| MS.gene051756 | MS.gene61542 | 0.840376 | 9.02E-58 | -1.69E-46 |
| MS.gene051757 | MS.gene61542 | 0.803396 | 3.56E-49 | -1.69E-46 |
| MS.gene051903 | MS.gene61542 | 0.827388 | 1.61E-54 | -1.69E-46 |
| MS.gene052286 | MS.gene61542 | 0.801832 | 7.47E-49 | -1.69E-46 |
| MS.gene052856 | MS.gene61542 | 0.80018 | 1.63E-48 | -1.69E-46 |
| MS.gene053058 | MS.gene61542 | 0.831955 | 1.24E-55 | -1.69E-46 |
| MS.gene053109 | MS.gene61542 | 0.846945 | 1.58E-59 | -1.69E-46 |
| MS.gene053381 | MS.gene61542 | 0.800828 | 1.20E-48 | -1.69E-46 |
| MS.gene05380 | MS.gene61542 | 0.804668 | 1.93E-49 | -1.69E-46 |
| MS.gene053952 | MS.gene61542 | 0.808087 | 3.68E-50 | -1.69E-46 |
| MS.gene054403 | MS.gene61542 | 0.809601 | 1.75E-50 | -1.69E-46 |
| MS.gene054823 | MS.gene61542 | 0.810196 | 1.30E-50 | -1.69E-46 |
| MS.gene055424 | MS.gene61542 | 0.800808 | 1.21E-48 | -1.69E-46 |
| MS.gene055441 | MS.gene61542 | 0.820996 | 5.10E-53 | -1.69E-46 |
| MS.gene056432 | MS.gene61542 | 0.80211 | 6.55E-49 | -1.69E-46 |
| MS.gene056580 | MS.gene61542 | 0.828696 | 7.79E-55 | -1.69E-46 |
| MS.gene056631 | MS.gene61542 | 0.818286 | 2.12E-52 | -1.69E-46 |
| MS.gene056760 | MS.gene61542 | 0.817959 | 2.52E-52 | -1.69E-46 |
| MS.gene056787 | MS.gene61542 | 0.817261 | 3.61E-52 | -1.69E-46 |
| MS.gene057057 | MS.gene61542 | 0.83852 | 2.74E-57 | -1.69E-46 |
| MS.gene057094 | MS.gene61542 | 0.825318 | 5.00E-54 | -1.69E-46 |
| MS.gene057140 | MS.gene61542 | 0.830012 | 3.73E-55 | -1.69E-46 |
| MS.gene057234 | MS.gene61542 | 0.849544 | 3.02E-60 | -1.69E-46 |
| MS.gene05781 | MS.gene61542 | 0.80104 | 1.09E-48 | -1.69E-46 |
| MS.gene057999 | MS.gene61542 | 0.820938 | 5.26E-53 | -1.69E-46 |
| MS.gene058054 | MS.gene61542 | 0.801317 | 9.53E-49 | -1.69E-46 |
| MS.gene058055 | MS.gene61542 | 0.82939 | 5.29E-55 | -1.69E-46 |
| MS.gene058182 | MS.gene61542 | 0.81954 | 1.10E-52 | -1.69E-46 |
| MS.gene058238 | MS.gene61542 | 0.846492 | 2.10E-59 | -1.69E-46 |
| MS.gene058646 | MS.gene61542 | 0.823021 | 1.73E-53 | -1.69E-46 |
| MS.gene058654 | MS.gene61542 | 0.839951 | 1.17E-57 | -1.69E-46 |
| MS.gene058906 | MS.gene61542 | 0.83892 | 2.16E-57 | -1.69E-46 |
| MS.gene059898 | MS.gene61542 | 0.822859 | 1.89E-53 | -1.69E-46 |
| MS.gene06001 | MS.gene61542 | 0.813515 | 2.46E-51 | -1.69E-46 |
| MS.gene06011 | MS.gene61542 | 0.803672 | 3.12E-49 | -1.69E-46 |
| MS.gene060297 | MS.gene61542 | 0.802772 | 4.79E-49 | -1.69E-46 |
| MS.gene060463 | MS.gene61542 | 0.809731 | 1.64E-50 | -1.69E-46 |
| MS.gene060465 | MS.gene61542 | 0.81569 | 8.12E-52 | -1.69E-46 |
| MS.gene060702 | MS.gene61542 | 0.81162 | 6.39E-51 | -1.69E-46 |
| MS.gene060869 | MS.gene61542 | 0.806014 | 1.01E-49 | -1.69E-46 |
| MS.gene061145 | MS.gene61542 | 0.810102 | 1.36E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 27 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTACACTGGCGTTCTTTCT+TGG | 0.246824 | 2.1:-2042220 | MS.gene61542:CDS |
| CGCCGTTTCCTTGATAAGTA+TGG | 0.286828 | 2.1:-2040211 | MS.gene61542:CDS |
| ACTAGGAGCTGATAATCTTA+AGG | 0.380283 | 2.1:-2042193 | MS.gene61542:CDS |
| CAAGGAAACGGCGCTCAGTT+GGG | 0.381526 | 2.1:+2040221 | None:intergenic |
| TGGAAGAATTTGCTTGTGTT+TGG | 0.393493 | 2.1:-2040191 | MS.gene61542:CDS |
| CAGTGTAGGCGCTCCTCTGC+AGG | 0.428518 | 2.1:+2042234 | None:intergenic |
| TACAATAACCTCAGCTGTAA+AGG | 0.434603 | 2.1:-2040260 | MS.gene61542:CDS |
| CGTTCTTTCTTGGTCAAACT+AGG | 0.434756 | 2.1:-2042210 | MS.gene61542:CDS |
| CTAGGAGCTGATAATCTTAA+GGG | 0.435141 | 2.1:-2042192 | MS.gene61542:CDS |
| AAATTCTTCCATACTTATCA+AGG | 0.445192 | 2.1:+2040203 | None:intergenic |
| TGTGTTTGGATGAAATTGTA+TGG | 0.456773 | 2.1:-2040177 | MS.gene61542:CDS |
| TCAAGGAAACGGCGCTCAGT+TGG | 0.462763 | 2.1:+2040220 | None:intergenic |
| TTCCATACTTATCAAGGAAA+CGG | 0.477616 | 2.1:+2040209 | None:intergenic |
| CTTACTTGTGGCAAGCAACT+AGG | 0.484838 | 2.1:+2042151 | None:intergenic |
| AAGGAAACGGCGCTCAGTTG+GGG | 0.501938 | 2.1:+2040222 | None:intergenic |
| GATGTCAGTATATACGTTGT+GGG | 0.529870 | 2.1:-2041521 | MS.gene61542:CDS |
| TCAGCTGTAAAGGATGTATG+TGG | 0.535855 | 2.1:-2040250 | MS.gene61542:CDS |
| TATATTGTATACACAGTACT+TGG | 0.537335 | 2.1:-2041545 | MS.gene61542:CDS |
| CAGTATATACGTTGTGGGGA+AGG | 0.538675 | 2.1:-2041516 | MS.gene61542:CDS |
| CTGCAGAGGAGCGCCTACAC+TGG | 0.552563 | 2.1:-2042233 | MS.gene61542:CDS |
| TTTGGATGAAATTGTATGGA+AGG | 0.577163 | 2.1:-2040173 | None:intergenic |
| AGATGTCAGTATATACGTTG+TGG | 0.591952 | 2.1:-2041522 | MS.gene61542:CDS |
| CCAAGAAAGAACGCCAGTGT+AGG | 0.602222 | 2.1:+2042220 | None:intergenic |
| ATGTCAGTATATACGTTGTG+GGG | 0.608096 | 2.1:-2041520 | MS.gene61542:CDS |
| AGGAAACGGCGCTCAGTTGG+GGG | 0.618275 | 2.1:+2040223 | None:intergenic |
| ACATACATCCTTTACAGCTG+AGG | 0.624977 | 2.1:+2040252 | None:intergenic |
| CAGCTGTAAAGGATGTATGT+GGG | 0.637321 | 2.1:-2040249 | MS.gene61542:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATCATTAATGAAAAATT+TGG | - | chr2.1:2040605-2040624 | MS.gene61542:intron | 10.0% |
| !! | ACATATTTAATCAAAAAACA+AGG | - | chr2.1:2041929-2041948 | MS.gene61542:intron | 15.0% |
| !! | TATCCTATTAGAAATAAATA+GGG | - | chr2.1:2041171-2041190 | MS.gene61542:intron | 15.0% |
| !! | TTAAATATGTATACTATTCT+TGG | + | chr2.1:2041919-2041938 | None:intergenic | 15.0% |
| !! | AATAACTAAAATTTAGTCCT+TGG | + | chr2.1:2040411-2040430 | None:intergenic | 20.0% |
| !! | AGTATTCTATCTTTGTAATT+GGG | + | chr2.1:2041203-2041222 | None:intergenic | 20.0% |
| !! | ATAAATCACTGTTTACTAAA+AGG | + | chr2.1:2040819-2040838 | None:intergenic | 20.0% |
| !! | GTATCCTATTAGAAATAAAT+AGG | - | chr2.1:2041170-2041189 | MS.gene61542:intron | 20.0% |
| !! | TAAATCACTGTTTACTAAAA+GGG | + | chr2.1:2040818-2040837 | None:intergenic | 20.0% |
| !! | TAGTATTCTATCTTTGTAAT+TGG | + | chr2.1:2041204-2041223 | None:intergenic | 20.0% |
| !! | TGTCATCAAATAAAAAAGAT+TGG | + | chr2.1:2040968-2040987 | None:intergenic | 20.0% |
| !! | TTATTAGAATTCTATTTGCA+AGG | - | chr2.1:2040426-2040445 | MS.gene61542:intron | 20.0% |
| !! | TTCATATAAACAGATTTCAA+CGG | + | chr2.1:2040460-2040479 | None:intergenic | 20.0% |
| !!! | ATGTGTTGATTATATTTTGT+TGG | - | chr2.1:2041479-2041498 | MS.gene61542:intron | 20.0% |
| !!! | ATTTATTTCTAATAGGATAC+AGG | + | chr2.1:2041170-2041189 | None:intergenic | 20.0% |
| !!! | GACATAATTTTCAAAAATGA+AGG | + | chr2.1:2040770-2040789 | None:intergenic | 20.0% |
| !!! | TTGTTATTTAAGAGAGAATT+GGG | + | chr2.1:2041265-2041284 | None:intergenic | 20.0% |
| !!! | TTTATTTCTAATAGGATACA+GGG | + | chr2.1:2041169-2041188 | None:intergenic | 20.0% |
| !!! | TTTTATTTGATGACAGTAAA+TGG | - | chr2.1:2040973-2040992 | MS.gene61542:intron | 20.0% |
| ! | AAAAATTTGGAAAAGAGTTG+TGG | - | chr2.1:2040618-2040637 | MS.gene61542:intron | 25.0% |
| ! | AAATTCTTCCATACTTATCA+AGG | + | chr2.1:2042221-2042240 | None:intergenic | 25.0% |
| ! | ATGGATAAATTACCTTATCT+AGG | - | chr2.1:2040351-2040370 | MS.gene61542:intron | 25.0% |
| ! | CAAAATATAATCAACACATC+AGG | + | chr2.1:2041478-2041497 | None:intergenic | 25.0% |
| ! | GATGATAAACTAGCTATTAA+AGG | - | chr2.1:2041762-2041781 | MS.gene61542:intron | 25.0% |
| ! | GTATTCTATCTTTGTAATTG+GGG | + | chr2.1:2041202-2041221 | None:intergenic | 25.0% |
| ! | TATATTGTATACACAGTACT+TGG | - | chr2.1:2040876-2040895 | MS.gene61542:intron | 25.0% |
| ! | TTCTACTTCTTATCTTTATC+AGG | - | chr2.1:2040847-2040866 | MS.gene61542:intron | 25.0% |
| !! | CTAGTTTATCATCTTTTCTA+GGG | + | chr2.1:2041755-2041774 | None:intergenic | 25.0% |
| !! | TGTTATTTAAGAGAGAATTG+GGG | + | chr2.1:2041264-2041283 | None:intergenic | 25.0% |
| !!! | ATCTGTTACTGATTTTTGAT+GGG | + | chr2.1:2040677-2040696 | None:intergenic | 25.0% |
| !!! | CTTGTTATTTAAGAGAGAAT+TGG | + | chr2.1:2041266-2041285 | None:intergenic | 25.0% |
| !!! | TATCTGTTACTGATTTTTGA+TGG | + | chr2.1:2040678-2040697 | None:intergenic | 25.0% |
| !!! | TGTCCCTATTTATTTCTAAT+AGG | + | chr2.1:2041177-2041196 | None:intergenic | 25.0% |
| AAATTGCAATTTCAAACCCT+TGG | + | chr2.1:2042038-2042057 | None:intergenic | 30.0% | |
| AACTTTATCTGATTCTGAAC+TGG | - | chr2.1:2040384-2040403 | MS.gene61542:intron | 30.0% | |
| AATATAATCAACACATCAGG+AGG | + | chr2.1:2041475-2041494 | None:intergenic | 30.0% | |
| AATTCATTGCTAAACGAGAA+TGG | + | chr2.1:2041729-2041748 | None:intergenic | 30.0% | |
| AATTCTATTTGCAAGGTTAG+TGG | - | chr2.1:2040433-2040452 | MS.gene61542:intron | 30.0% | |
| ATTAAGGCAATAGATCGAAA+AGG | + | chr2.1:2041668-2041687 | None:intergenic | 30.0% | |
| ATTCTATTTGCAAGGTTAGT+GGG | - | chr2.1:2040434-2040453 | MS.gene61542:intron | 30.0% | |
| GAGAAGCTTGCAAAAAATTA+AGG | + | chr2.1:2041684-2041703 | None:intergenic | 30.0% | |
| GATAGAATACTACAGAACTT+CGG | - | chr2.1:2041212-2041231 | MS.gene61542:intron | 30.0% | |
| GTATGAATGTGTATCTTACA+TGG | - | chr2.1:2040332-2040351 | MS.gene61542:intron | 30.0% | |
| TAACAGAGAAGAATCAAACT+TGG | + | chr2.1:2041513-2041532 | None:intergenic | 30.0% | |
| TCGTTCATATTGTGATTTGA+TGG | - | chr2.1:2041956-2041975 | MS.gene61542:intron | 30.0% | |
| TGTGTTTGGATGAAATTGTA+TGG | - | chr2.1:2042244-2042263 | MS.gene61542:CDS | 30.0% | |
| TTCCATACTTATCAAGGAAA+CGG | + | chr2.1:2042215-2042234 | None:intergenic | 30.0% | |
| TTGCCTATAAATAACAAGAG+TGG | + | chr2.1:2041306-2041325 | None:intergenic | 30.0% | |
| ! | AACCTACATTGTTGATGAAA+GGG | + | chr2.1:2041384-2041403 | None:intergenic | 30.0% |
| ! | AAGGGTTTGAAATTGCAATT+TGG | - | chr2.1:2042037-2042056 | MS.gene61542:intron | 30.0% |
| !! | AGCATATTGTTATTTCACCA+AGG | - | chr2.1:2042018-2042037 | MS.gene61542:intron | 30.0% |
| !! | GCATATTGTTATTTCACCAA+GGG | - | chr2.1:2042019-2042038 | MS.gene61542:intron | 30.0% |
| !! | GCTAGTTTATCATCTTTTCT+AGG | + | chr2.1:2041756-2041775 | None:intergenic | 30.0% |
| AACAATATGCTTGAGTCACT+CGG | + | chr2.1:2042009-2042028 | None:intergenic | 35.0% | |
| AATAATCAGAACTGCAGACA+AGG | + | chr2.1:2041424-2041443 | None:intergenic | 35.0% | |
| ACTAGGAGCTGATAATCTTA+AGG | - | chr2.1:2040228-2040247 | MS.gene61542:CDS | 35.0% | |
| AGATGTCAGTATATACGTTG+TGG | - | chr2.1:2040899-2040918 | MS.gene61542:intron | 35.0% | |
| AGTTAGAAAAGCTAGCTATC+AGG | - | chr2.1:2041831-2041850 | MS.gene61542:intron | 35.0% | |
| ATGTCAGTATATACGTTGTG+GGG | - | chr2.1:2040901-2040920 | MS.gene61542:intron | 35.0% | |
| CAGTAACAGATACAAGATTG+TGG | - | chr2.1:2040686-2040705 | MS.gene61542:intron | 35.0% | |
| CTAGGAGCTGATAATCTTAA+GGG | - | chr2.1:2040229-2040248 | MS.gene61542:CDS | 35.0% | |
| GATGTCAGTATATACGTTGT+GGG | - | chr2.1:2040900-2040919 | MS.gene61542:intron | 35.0% | |
| GCTATTAAAGGATACTCTTG+CGG | - | chr2.1:2041774-2041793 | MS.gene61542:intron | 35.0% | |
| TACAATAACCTCAGCTGTAA+AGG | - | chr2.1:2042161-2042180 | MS.gene61542:CDS | 35.0% | |
| TTGACAGCTTACGAACATAT+AGG | + | chr2.1:2042068-2042087 | None:intergenic | 35.0% | |
| TTGGAAAAGAGTTGTGGAAA+TGG | - | chr2.1:2040624-2040643 | MS.gene61542:intron | 35.0% | |
| ! | GAACCTACATTGTTGATGAA+AGG | + | chr2.1:2041385-2041404 | None:intergenic | 35.0% |
| ! | TGGAAGAATTTGCTTGTGTT+TGG | - | chr2.1:2042230-2042249 | MS.gene61542:CDS | 35.0% |
| ! | TTAAAGTGCTCACCTAGATA+AGG | + | chr2.1:2040366-2040385 | None:intergenic | 35.0% |
| ! | TTGTCTGCAGTTCTGATTAT+TGG | - | chr2.1:2041423-2041442 | MS.gene61542:intron | 35.0% |
| !! | CGACCACTCTTGTTATTTAT+AGG | - | chr2.1:2041300-2041319 | MS.gene61542:intron | 35.0% |
| !!! | GTTTTGTTTTTCTCCAGTGT+CGG | - | chr2.1:2042129-2042148 | MS.gene61542:intron | 35.0% |
| AAATAACAAGAGTGGTCGAG+AGG | + | chr2.1:2041298-2041317 | None:intergenic | 40.0% | |
| AAGAGAGAATTGGGGACTTT+GGG | + | chr2.1:2041256-2041275 | None:intergenic | 40.0% | |
| AATAACAAGAGTGGTCGAGA+GGG | + | chr2.1:2041297-2041316 | None:intergenic | 40.0% | |
| ACATACATCCTTTACAGCTG+AGG | + | chr2.1:2042172-2042191 | None:intergenic | 40.0% | |
| AGCCCTTTCATCAACAATGT+AGG | - | chr2.1:2041379-2041398 | MS.gene61542:intron | 40.0% | |
| AGCTATCAGGTGAACTAGTA+GGG | - | chr2.1:2041844-2041863 | MS.gene61542:intron | 40.0% | |
| ATGGGAAATATTGTGCAGGA+TGG | + | chr2.1:2041603-2041622 | None:intergenic | 40.0% | |
| CAGCTGTAAAGGATGTATGT+GGG | - | chr2.1:2042172-2042191 | MS.gene61542:CDS | 40.0% | |
| CGTTCTTTCTTGGTCAAACT+AGG | - | chr2.1:2040211-2040230 | MS.gene61542:CDS | 40.0% | |
| GAGAGCAGTATACTTACTTG+TGG | + | chr2.1:2040285-2040304 | None:intergenic | 40.0% | |
| GGTAACAAGGTTAGGTAGTT+GGG | + | chr2.1:2041356-2041375 | None:intergenic | 40.0% | |
| TAAGAGAGAATTGGGGACTT+TGG | + | chr2.1:2041257-2041276 | None:intergenic | 40.0% | |
| TAGCTATCAGGTGAACTAGT+AGG | - | chr2.1:2041843-2041862 | MS.gene61542:intron | 40.0% | |
| TCAGCTGTAAAGGATGTATG+TGG | - | chr2.1:2042171-2042190 | MS.gene61542:CDS | 40.0% | |
| TCATTGCTAAACGAGAATGG+TGG | + | chr2.1:2041726-2041745 | None:intergenic | 40.0% | |
| TGGTAACAAGGTTAGGTAGT+TGG | + | chr2.1:2041357-2041376 | None:intergenic | 40.0% | |
| TGGTATGGGAAATATTGTGC+AGG | + | chr2.1:2041607-2041626 | None:intergenic | 40.0% | |
| TTCTCCTCATGCTGTCAATT+GGG | - | chr2.1:2041561-2041580 | MS.gene61542:intron | 40.0% | |
| ! | ATTGTTGATGAAAGGGCTGT+TGG | + | chr2.1:2041377-2041396 | None:intergenic | 40.0% |
| ! | CTCTTGCGGTGTTGAAAATA+TGG | - | chr2.1:2041788-2041807 | MS.gene61542:intron | 40.0% |
| !! | AAACGAGAATGGTGGATTGA+GGG | + | chr2.1:2041718-2041737 | None:intergenic | 40.0% |
| !! | TAAACGAGAATGGTGGATTG+AGG | + | chr2.1:2041719-2041738 | None:intergenic | 40.0% |
| !!! | GGACGCTAGTTTTATGGTAT+GGG | + | chr2.1:2041621-2041640 | None:intergenic | 40.0% |
| !!! | TGGACGCTAGTTTTATGGTA+TGG | + | chr2.1:2041622-2041641 | None:intergenic | 40.0% |
| ACGTACACATGACTTGAGAG+AGG | + | chr2.1:2040309-2040328 | None:intergenic | 45.0% | |
| CAGTATATACGTTGTGGGGA+AGG | - | chr2.1:2040905-2040924 | MS.gene61542:intron | 45.0% | |
| CGCCGTTTCCTTGATAAGTA+TGG | - | chr2.1:2042210-2042229 | MS.gene61542:CDS | 45.0% | |
| CTTACTTGTGGCAAGCAACT+AGG | + | chr2.1:2040273-2040292 | None:intergenic | 45.0% | |
| CTTCTCCTCATGCTGTCAAT+TGG | - | chr2.1:2041560-2041579 | MS.gene61542:intron | 45.0% | |
| GAAACAGAGCAACAGTGTTG+TGG | + | chr2.1:2041646-2041665 | None:intergenic | 45.0% | |
| GCAGGATGGACAAGATTCTA+GGG | + | chr2.1:2041589-2041608 | None:intergenic | 45.0% | |
| GCTATCAGGTGAACTAGTAG+GGG | - | chr2.1:2041845-2041864 | MS.gene61542:intron | 45.0% | |
| TCTGATTCTGAACTGGTCCA+AGG | - | chr2.1:2040391-2040410 | MS.gene61542:intron | 45.0% | |
| TGCAGGATGGACAAGATTCT+AGG | + | chr2.1:2041590-2041609 | None:intergenic | 45.0% | |
| TGTAAGATAACCTCCGACAC+TGG | + | chr2.1:2042145-2042164 | None:intergenic | 45.0% | |
| ! | TTTTCATGGAGTTCCTGCAG+AGG | - | chr2.1:2040174-2040193 | MS.gene61542:CDS | 45.0% |
| !! | AACGAGAATGGTGGATTGAG+GGG | + | chr2.1:2041717-2041736 | None:intergenic | 45.0% |
| !! | TGAAAGGGCTGTTGGTAACA+AGG | + | chr2.1:2041369-2041388 | None:intergenic | 45.0% |
| !! | TTGTTTTTCTCCAGTGTCGG+AGG | - | chr2.1:2042132-2042151 | MS.gene61542:intron | 45.0% |
| !!! | GTGGATGGACGCTAGTTTTA+TGG | + | chr2.1:2041627-2041646 | None:intergenic | 45.0% |
| ATGAGGAGAAGCAAAGCCAC+AGG | + | chr2.1:2041551-2041570 | None:intergenic | 50.0% | |
| ATTGTTGTGCCTAGCACCTG+TGG | - | chr2.1:2041532-2041551 | MS.gene61542:CDS | 50.0% | |
| CAGAGCAACAGTGTTGTGGA+TGG | + | chr2.1:2041642-2041661 | None:intergenic | 50.0% | |
| CCAAGAAAGAACGCCAGTGT+AGG | + | chr2.1:2040204-2040223 | None:intergenic | 50.0% | |
| CCTACACTGGCGTTCTTTCT+TGG | - | chr2.1:2040201-2040220 | MS.gene61542:CDS | 50.0% | |
| GGAACCCAATTGACAGCATG+AGG | + | chr2.1:2041568-2041587 | None:intergenic | 50.0% | |
| TGCTTGAGTCACTCGGCAAT+TGG | + | chr2.1:2042002-2042021 | None:intergenic | 50.0% | |
| !! | GGGCTGTTGGTAACAAGGTT+AGG | + | chr2.1:2041364-2041383 | None:intergenic | 50.0% |
| AAGGAAACGGCGCTCAGTTG+GGG | + | chr2.1:2042202-2042221 | None:intergenic | 55.0% | |
| CAAGGAAACGGCGCTCAGTT+GGG | + | chr2.1:2042203-2042222 | None:intergenic | 55.0% | |
| GAAGCAAAGCCACAGGTGCT+AGG | + | chr2.1:2041544-2041563 | None:intergenic | 55.0% | |
| TCAAGGAAACGGCGCTCAGT+TGG | + | chr2.1:2042204-2042223 | None:intergenic | 55.0% | |
| AGGAAACGGCGCTCAGTTGG+GGG | + | chr2.1:2042201-2042220 | None:intergenic | 60.0% | |
| CAGTGTAGGCGCTCCTCTGC+AGG | + | chr2.1:2040190-2040209 | None:intergenic | 65.0% | |
| !! | CTGCAGAGGAGCGCCTACAC+TGG | - | chr2.1:2040188-2040207 | MS.gene61542:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 2040174 | 2042269 | 2040174 | ID=MS.gene61542 |
| chr2.1 | mRNA | 2040174 | 2042269 | 2040174 | ID=MS.gene61542.t1;Parent=MS.gene61542 |
| chr2.1 | exon | 2042156 | 2042269 | 2042156 | ID=MS.gene61542.t1.exon1;Parent=MS.gene61542.t1 |
| chr2.1 | CDS | 2042156 | 2042269 | 2042156 | ID=cds.MS.gene61542.t1;Parent=MS.gene61542.t1 |
| chr2.1 | exon | 2041495 | 2041574 | 2041495 | ID=MS.gene61542.t1.exon2;Parent=MS.gene61542.t1 |
| chr2.1 | CDS | 2041495 | 2041574 | 2041495 | ID=cds.MS.gene61542.t1;Parent=MS.gene61542.t1 |
| chr2.1 | exon | 2040174 | 2040289 | 2040174 | ID=MS.gene61542.t1.exon3;Parent=MS.gene61542.t1 |
| chr2.1 | CDS | 2040174 | 2040289 | 2040174 | ID=cds.MS.gene61542.t1;Parent=MS.gene61542.t1 |
| Gene Sequence |
| Protein sequence |
