AlfalfaGEDB | MS.gene70702

M. sativa cultivar XinJiangDaYe / MS.gene70702

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70702.t1	XP_003601148.2	96.7	509	17	0	1	509	1	509	1.20E-284	988.4

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70702.t1	P24465	52.9	437	198	3	72	501	63	498	3.8e-133	476.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70702.t1	G7J474	96.7	509	17	0	1	509	1	509	8.8e-285	988.4

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene70702	0.824326	8.57E-54	-1.69E-46
MS.gene049171	MS.gene70702	0.858039	1.08E-62	-1.69E-46
MS.gene049173	MS.gene70702	0.842001	3.38E-58	-1.69E-46
MS.gene049222	MS.gene70702	0.804903	1.73E-49	-1.69E-46
MS.gene049257	MS.gene70702	0.801435	9.02E-49	-1.69E-46
MS.gene049285	MS.gene70702	0.817611	3.01E-52	-1.69E-46
MS.gene049609	MS.gene70702	0.811402	7.13E-51	-1.69E-46
MS.gene049633	MS.gene70702	0.824921	6.21E-54	-1.69E-46
MS.gene049805	MS.gene70702	0.804889	1.74E-49	-1.69E-46
MS.gene050444	MS.gene70702	0.831119	2.00E-55	-1.69E-46

Showing 1 to 10 of 68 entries

Previous1 2 3 4 5 6 7Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70702.t1	MTR_3g076530	96.660	509	17	0	1	509	1	509	0.0	1023
MS.gene70702.t1	MTR_4g089030	47.904	501	246	5	14	503	21	517	3.57e-169	488
MS.gene70702.t1	MTR_4g104610	47.177	496	241	7	18	500	8	495	1.41e-166	481
MS.gene70702.t1	MTR_5g073250	46.000	500	256	6	9	499	2	496	6.36e-165	476
MS.gene70702.t1	MTR_3g057910	47.257	474	236	3	34	499	32	499	7.41e-164	474
MS.gene70702.t1	MTR_5g094540	45.726	503	253	6	9	499	2	496	3.58e-162	469
MS.gene70702.t1	MTR_4g089025	46.680	497	255	4	13	503	26	518	2.31e-161	468
MS.gene70702.t1	MTR_5g094550	46.626	489	249	5	15	499	16	496	3.26e-161	467
MS.gene70702.t1	MTR_5g019010	45.743	505	252	7	13	505	11	505	5.29e-160	464
MS.gene70702.t1	MTR_5g094560	45.399	489	255	5	15	499	16	496	9.09e-160	463

Showing 1 to 10 of 374 entries

Previous1 2 3 4 5…38Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70702.t1	AT3G26300	43.636	495	272	5	14	503	5	497	3.46e-150	439
MS.gene70702.t1	AT3G48280	43.673	490	267	5	15	503	7	488	1.70e-149	437
MS.gene70702.t1	AT3G26310	44.286	490	266	5	15	499	5	492	1.82e-149	437
MS.gene70702.t1	AT5G25120	43.958	480	258	6	14	488	5	478	3.69e-146	429
MS.gene70702.t1	AT5G25140	43.750	480	259	6	14	488	5	478	3.03e-144	424
MS.gene70702.t1	AT3G48270	42.276	492	276	4	14	504	5	489	9.77e-144	422
MS.gene70702.t1	AT3G48290	45.064	466	248	4	28	492	21	479	3.67e-143	421
MS.gene70702.t1	AT3G26330	43.590	468	257	5	41	503	32	497	5.99e-143	421
MS.gene70702.t1	AT5G25130	43.724	478	262	4	14	488	5	478	3.25e-142	418
MS.gene70702.t1	AT3G26320	42.798	486	271	6	23	503	14	497	7.26e-142	417

Showing 1 to 10 of 293 entries

Previous1 2 3 4 5…30Next

Find 111 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGCTTGATGAGTACC+AGG	0.590727	3.3:-65216472	MS.gene70702:CDS
AAAGGTATTGTTGGAGGACC+AGG	0.478919	3.3:+65216978	None:intergenic
AAAGTAATATTGATTATAAG+GGG	0.563339	3.3:-65215681	MS.gene70702:CDS
AACATTTATTACCCTTGATT+GGG	0.379355	3.3:-65216019	MS.gene70702:CDS
AACTCCTCTATAGCTTTGAT+TGG	0.390151	3.3:-65215567	MS.gene70702:CDS
AAGGCCTTGTAAAGATATGT+GGG	0.580239	3.3:+65216923	None:intergenic
AAGGGACTTTACAGAAGGAG+GGG	0.662971	3.3:-65216517	MS.gene70702:CDS
AAGTTGCTAGCTTAGTTCAT+AGG	0.382300	3.3:-65216626	MS.gene70702:CDS
ACTCCTCTATAGCTTTGATT+GGG	0.508976	3.3:-65215566	MS.gene70702:CDS
ACTGTATGAGTTTACCCTTT+TGG	0.406303	3.3:+65216665	None:intergenic

Showing 1 to 10 of 111 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGCCTTAATAACCATGTAT+TGG	-	chr3.3:65216360-65216379	MS.gene70702:CDS	30.0%
CAACATTTATTACCCTTGAT+TGG	-	chr3.3:65216525-65216544	MS.gene70702:CDS	30.0%
CCTCAAGTAAAATATCTACA+AGG	+	chr3.3:65216268-65216287	None:intergenic	30.0%
CTATGAAAATGAATACACAG+AGG	+	chr3.3:65215491-65215510	None:intergenic	30.0%
GAGTCTTCATAGAATGTATA+CGG	+	chr3.3:65217100-65217119	None:intergenic	30.0%
TAATATCAAGGCAATAATCC+TGG	-	chr3.3:65216328-65216347	MS.gene70702:CDS	30.0%
TTGTATTACAGCAAAAGACT+TGG	-	chr3.3:65217012-65217031	MS.gene70702:CDS	30.0%
ATATCTTCCATGGATTCTCT+AGG	+	chr3.3:65216725-65216744	None:intergenic	35.0%
ATCTCTCAGTATGTTGAAAG+TGG	-	chr3.3:65216386-65216405	MS.gene70702:CDS	35.0%
ATGAATACACAGAGGAAGAA+TGG	+	chr3.3:65215483-65215502	None:intergenic	35.0%

Showing 1 to 10 of 137 entries

Previous1 2 3 4 5…14Next

Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	65215444	65217123	65215444	ID=MS.gene70702
chr3.3	mRNA	65215444	65217123	65215444	ID=MS.gene70702.t1;Parent=MS.gene70702
chr3.3	exon	65216218	65217123	65216218	ID=MS.gene70702.t1.exon1;Parent=MS.gene70702.t1
chr3.3	CDS	65216218	65217123	65216218	ID=cds.MS.gene70702.t1;Parent=MS.gene70702.t1
chr3.3	exon	65215444	65216067	65215444	ID=MS.gene70702.t1.exon2;Parent=MS.gene70702.t1
chr3.3	CDS	65215444	65216067	65215444	ID=cds.MS.gene70702.t1;Parent=MS.gene70702.t1

Gene Sequence

>MS.gene70702

ATGGCTATGTTCCAATGGCTCAAGGAAAGCCACAAACCATTCTTCCTCTGTGTATTCATTTTCATAGCTCTATTGATGAAATTTTTCATAAACAATTCAAGAAAGAGAAGTTCCAATCTACCTCCTGGTCCTCCAACAATACCTTTCATTGGCAACCTTCACCAGCTTGGCACCATGCCCCACATATCTTTACAAGGCCTTGCAGATAAATATGGACCCATAATTTTCTTACAACTTGGAGAAATCTCAACAGTGGTTGTTTCATCTGCTAGACTAGCAAAGGAGGTGTTGAAAACACATGATCTTGCACTCGCAAGCCGACCGCAACTGTTTTCAGCTAAGTACCTCTTTTACAATTGTACGGACATCGCTTTCGCTCCTTACAGTGCTTACTGGAGGCATGTGAGAAAAATTTGCATACTTGAGCTTCTAAGTGCCAAAAGGGTAAACTCATACAGTGCTGTTAGAGAAGAAGAAGTTGCTAGCTTAGTTCATAGGATTGCAGGGTCTTATTCAGGAACTATCAATTTGTCCAAGATATTGGGACTTTATGCAAATAATGTTGTTTGCCGCGTAGCGTTTGGAAGGGACTTTACAGAAGGAGGGGAGAGTAAAAAATATGGTTTCCAAAAGATGCTTGATGAGTACCAGGAACTCCTTGGAGGATTCAGCGTTGGTGATTTTTTTCCTTCCTTGGAATTCATACACAGCTTGACAGGTATGAAAGCAAGACTCCAAGACACTTCAAAAAAATTTGATCAACTCATTGATCAGATAGTGAGTGAACACAAGGCTTGCAACAAAATAAAGGAGCATAAGGACCTTGTAGATATTTTACTTGAGGTACAAGAGAATGACTCGGGTGAGATGCCTCTTACCATTGATAATATCAAGGCAATAATCCTGGTAAGTGATGAAGCCTTAATAACCATGTATTGGTTTATCTCTCAGTATGTTGAAAGTGGATAAGGCATGATATATTATTCACTTTGCTGAATTGACTAATGACATTTTGACAATACTTTGTTTCTCTCCTTTTTTTTTTTTTTTTTGCAGGATATGTTTGCTGCTGGAACTGATACAACATTTATTACCCTTGATTGGGCAATGACAGAGCTGCTAATGAATCCTCGTGTCATGGAAAAAGCACAAAAGGAAGTGCGTAGCATCCTGCGAGAAAGAAGAGTTGTTGCAGAGAGTGATTTGCATCAACTGCAGTACATGAAGGCTGTAATTAAAGAGATATTTCGGCTGCACCCTGCAGTACCAGTATTAGTCCCTAGAGAATCCATGGAAGATATTATCTTAGAAGGGTACAAAATTCCAGCTAAAACAAGAATTTTTGTCAATGCTTGGGCAATTGGTAGGAATCCGGAAAGTTGGGAAGATCCAACTGCATTTAAACCAGAAAGATTTTTAGAAAGTAATATTGATTATAAGGGGCAGGATTTTGAGCTAATACCTTTTGGAGCAGGCAGAAGAGGTTGTCCAGCTATTACATTTGCCATTGCAGTTGTTGAGCTTGCTCTAGGTCAACTCCTCTATAGCTTTGATTGGGAGCTTCCTCCTTGTATTACAGCAAAAGACTTGGATCTCACTGAAGTTTTTGGCATCTCAATGCACAGGAGAGAAAATCTTCTTGTTGTTGCGAAGCCGTATACATTCTATGAAGACTCATGA

Protein sequence

>MS.gene70702.t1

MAMFQWLKESHKPFFLCVFIFIALLMKFFINNSRKRSSNLPPGPPTIPFIGNLHQLGTMPHISLQGLADKYGPIIFLQLGEISTVVVSSARLAKEVLKTHDLALASRPQLFSAKYLFYNCTDIAFAPYSAYWRHVRKICILELLSAKRVNSYSAVREEEVASLVHRIAGSYSGTINLSKILGLYANNVVCRVAFGRDFTEGGESKKYGFQKMLDEYQELLGGFSVGDFFPSLEFIHSLTGMKARLQDTSKKFDQLIDQIVSEHKACNKIKEHKDLVDILLEVQENDSGEMPLTIDNIKAIILDMFAAGTDTTFITLDWAMTELLMNPRVMEKAQKEVRSILRERRVVAESDLHQLQYMKAVIKEIFRLHPAVPVLVPRESMEDIILEGYKIPAKTRIFVNAWAIGRNPESWEDPTAFKPERFLESNIDYKGQDFELIPFGAGRRGCPAITFAIAVVELALGQLLYSFDWELPPCITAKDLDLTEVFGISMHRRENLLVVAKPYTFYEDS