Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74982.t1 | XP_013470260.1 | 98.5 | 331 | 5 | 0 | 1 | 331 | 1 | 331 | 1.80E-183 | 651.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74982.t1 | A0A072VS93 | 98.5 | 331 | 5 | 0 | 1 | 331 | 1 | 331 | 1.3e-183 | 651.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene74982 | 0.81019 | 1.30E-50 | -1.69E-46 |
| MS.gene049680 | MS.gene74982 | 0.807588 | 4.70E-50 | -1.69E-46 |
| MS.gene049807 | MS.gene74982 | 0.805872 | 1.08E-49 | -1.69E-46 |
| MS.gene049821 | MS.gene74982 | 0.808373 | 3.20E-50 | -1.69E-46 |
| MS.gene049863 | MS.gene74982 | 0.800459 | 1.43E-48 | -1.69E-46 |
| MS.gene050273 | MS.gene74982 | 0.800542 | 1.37E-48 | -1.69E-46 |
| MS.gene050559 | MS.gene74982 | 0.820086 | 8.26E-53 | -1.69E-46 |
| MS.gene050561 | MS.gene74982 | 0.80351 | 3.37E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene74982 | 0.809172 | 2.16E-50 | -1.69E-46 |
| MS.gene050945 | MS.gene74982 | 0.842346 | 2.74E-58 | -1.69E-46 |
| MS.gene051154 | MS.gene74982 | 0.819837 | 9.42E-53 | -1.69E-46 |
| MS.gene051279 | MS.gene74982 | 0.810519 | 1.11E-50 | -1.69E-46 |
| MS.gene051343 | MS.gene74982 | 0.800092 | 1.69E-48 | -1.69E-46 |
| MS.gene051699 | MS.gene74982 | 0.85137 | 9.27E-61 | -1.69E-46 |
| MS.gene051744 | MS.gene74982 | 0.818895 | 1.54E-52 | -1.69E-46 |
| MS.gene051832 | MS.gene74982 | 0.80065 | 1.30E-48 | -1.69E-46 |
| MS.gene051902 | MS.gene74982 | 0.805457 | 1.32E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene74982 | 0.800954 | 1.13E-48 | -1.69E-46 |
| MS.gene052239 | MS.gene74982 | -0.865607 | 5.22E-65 | -1.69E-46 |
| MS.gene052533 | MS.gene74982 | 0.801583 | 8.41E-49 | -1.69E-46 |
| MS.gene052793 | MS.gene74982 | 0.825538 | 4.44E-54 | -1.69E-46 |
| MS.gene053006 | MS.gene74982 | 0.808544 | 2.94E-50 | -1.69E-46 |
| MS.gene053189 | MS.gene74982 | 0.81708 | 3.97E-52 | -1.69E-46 |
| MS.gene053272 | MS.gene74982 | -0.820858 | 5.49E-53 | -1.69E-46 |
| MS.gene053931 | MS.gene74982 | 0.804756 | 1.85E-49 | -1.69E-46 |
| MS.gene053963 | MS.gene74982 | 0.805029 | 1.63E-49 | -1.69E-46 |
| MS.gene054222 | MS.gene74982 | 0.815554 | 8.71E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene74982 | 0.811314 | 7.45E-51 | -1.69E-46 |
| MS.gene05548 | MS.gene74982 | 0.837051 | 6.53E-57 | -1.69E-46 |
| MS.gene055555 | MS.gene74982 | 0.80417 | 2.46E-49 | -1.69E-46 |
| MS.gene055841 | MS.gene74982 | 0.805385 | 1.37E-49 | -1.69E-46 |
| MS.gene056082 | MS.gene74982 | 0.808814 | 2.57E-50 | -1.69E-46 |
| MS.gene056215 | MS.gene74982 | 0.800445 | 1.44E-48 | -1.69E-46 |
| MS.gene056677 | MS.gene74982 | 0.802153 | 6.42E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene74982 | 0.817376 | 3.41E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene74982 | 0.833602 | 4.85E-56 | -1.69E-46 |
| MS.gene057208 | MS.gene74982 | 0.82311 | 1.65E-53 | -1.69E-46 |
| MS.gene057598 | MS.gene74982 | 0.813205 | 2.88E-51 | -1.69E-46 |
| MS.gene057694 | MS.gene74982 | 0.809446 | 1.88E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene74982 | 0.842108 | 3.16E-58 | -1.69E-46 |
| MS.gene058008 | MS.gene74982 | 0.800665 | 1.30E-48 | -1.69E-46 |
| MS.gene05952 | MS.gene74982 | 0.822209 | 2.68E-53 | -1.69E-46 |
| MS.gene05985 | MS.gene74982 | -0.866711 | 2.33E-65 | -1.69E-46 |
| MS.gene060244 | MS.gene74982 | 0.802344 | 5.87E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene74982 | 0.824198 | 9.19E-54 | -1.69E-46 |
| MS.gene060935 | MS.gene74982 | 0.817265 | 3.61E-52 | -1.69E-46 |
| MS.gene060937 | MS.gene74982 | 0.815551 | 8.73E-52 | -1.69E-46 |
| MS.gene061100 | MS.gene74982 | 0.824414 | 8.18E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74982.t1 | MTR_1g111960 | 98.489 | 331 | 5 | 0 | 1 | 331 | 1 | 331 | 0.0 | 671 |
| MS.gene74982.t1 | MTR_1g050385 | 59.483 | 348 | 125 | 2 | 1 | 332 | 1 | 348 | 8.45e-151 | 427 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74982.t1 | AT3G54290 | 48.603 | 358 | 139 | 5 | 1 | 327 | 1 | 344 | 2.54e-112 | 330 |
Find 92 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGCGCGGTTTCCGAATT+TGG | 0.161837 | 1.3:+75945466 | MS.gene74982:CDS |
| CATCAAATCTGTTGGTGTTT+TGG | 0.169536 | 1.3:+75946405 | MS.gene74982:CDS |
| GGAGAAGGTGTTGCGGTTTA+TGG | 0.195686 | 1.3:+75945445 | MS.gene74982:CDS |
| TATCCAACCGTCCGTTTATA+CGG | 0.262754 | 1.3:+75945257 | MS.gene74982:CDS |
| TACAAGGCCTCTTGAAAATC+AGG | 0.294709 | 1.3:-75946439 | None:intergenic |
| TTGGTGACGGTGGGCGGCGG+TGG | 0.301202 | 1.3:+75945485 | MS.gene74982:CDS |
| CGGCGGTGGTGGTGTGGAGG+AGG | 0.308518 | 1.3:+75945499 | MS.gene74982:CDS |
| TCTTTCACTTAACTATCATT+TGG | 0.331758 | 1.3:-75947083 | None:intergenic |
| CCGCCCACCGTCACCAAATT+CGG | 0.342200 | 1.3:-75945479 | None:intergenic |
| TCTTCACAAATCCGTTTCAT+TGG | 0.345315 | 1.3:+75945322 | MS.gene74982:CDS |
| AGTTGATTTACTTCCACTAA+TGG | 0.356284 | 1.3:+75946879 | MS.gene74982:CDS |
| TGCTCGCCTCAAGTTATTGC+TGG | 0.359822 | 1.3:+75946471 | MS.gene74982:CDS |
| GGTGGGCGGCGGTGGTGGTG+TGG | 0.365661 | 1.3:+75945493 | MS.gene74982:CDS |
| TGTGAAACGTGGAGGGAAAA+AGG | 0.368154 | 1.3:+75945613 | MS.gene74982:CDS |
| GTGACGGTGGGCGGCGGTGG+TGG | 0.381919 | 1.3:+75945488 | MS.gene74982:CDS |
| AACTCCAATGCCTCCATTAG+TGG | 0.389254 | 1.3:-75946892 | None:intergenic |
| GGGCGGCGGTGGTGGTGTGG+AGG | 0.415226 | 1.3:+75945496 | MS.gene74982:CDS |
| GAAATTCGCGAGAAGCTATT+CGG | 0.416829 | 1.3:+75945676 | MS.gene74982:CDS |
| GTTGGATCCGAAAGTGTTAC+GGG | 0.417848 | 1.3:+75945416 | MS.gene74982:CDS |
| CCGCGAACCCGTAACACTTT+CGG | 0.423723 | 1.3:-75945423 | None:intergenic |
| AATTTCCTTATCTCCATCTT+CGG | 0.441143 | 1.3:-75945659 | None:intergenic |
| AGTTGGATCCGAAAGTGTTA+CGG | 0.443569 | 1.3:+75945415 | MS.gene74982:CDS |
| TGAAGAGTGACGTGTCCATC+CGG | 0.447849 | 1.3:-75945392 | None:intergenic |
| CCGAATTTGGTGACGGTGGG+CGG | 0.455678 | 1.3:+75945479 | MS.gene74982:CDS |
| GGAGTTGTTGGAGGTTATGA+TGG | 0.459395 | 1.3:+75945697 | MS.gene74982:CDS |
| TGTGAAGTCGGAGAAATTAA+CGG | 0.460050 | 1.3:+75945202 | MS.gene74982:CDS |
| GAAACTCTACGAGATCATTT+CGG | 0.461175 | 1.3:+75945362 | MS.gene74982:CDS |
| GAAATGATCTCGTAGAGTTT+CGG | 0.461770 | 1.3:-75945360 | None:intergenic |
| ACTTCCACTAATGGAGGCAT+TGG | 0.465464 | 1.3:+75946888 | MS.gene74982:CDS |
| TGTGGAGGAGGGAAAATTGC+CGG | 0.467382 | 1.3:+75945511 | MS.gene74982:CDS |
| TTCTGTGGGGAGTCCGAAGA+TGG | 0.470996 | 1.3:+75945646 | MS.gene74982:CDS |
| CGATCAGCACGATCAAAGAA+AGG | 0.475367 | 1.3:-75945752 | None:intergenic |
| AAAATTGCCGGTGATGGTTA+CGG | 0.483325 | 1.3:+75945523 | MS.gene74982:CDS |
| GAGAAGCTATTCGGAGTTGT+TGG | 0.486257 | 1.3:+75945685 | MS.gene74982:CDS |
| CAAACAACATTTCAAGGAAG+AGG | 0.495491 | 1.3:+75946855 | MS.gene74982:CDS |
| AATTTGGTGACGGTGGGCGG+CGG | 0.505401 | 1.3:+75945482 | MS.gene74982:CDS |
| CCGAAAGTGTTACGGGTTCG+CGG | 0.512674 | 1.3:+75945423 | MS.gene74982:CDS |
| TTTCCGAATTTGGTGACGGT+GGG | 0.517929 | 1.3:+75945476 | MS.gene74982:CDS |
| GCTCTCTAAAGCTGCAAAAG+AGG | 0.520877 | 1.3:+75946339 | MS.gene74982:CDS |
| GCAGTGCAAACAACATTTCA+AGG | 0.524181 | 1.3:+75946849 | MS.gene74982:CDS |
| TCTCGTAGAGTTTCGGATGA+AGG | 0.530435 | 1.3:-75945353 | None:intergenic |
| GGCGGTGGTGGTGTGGAGGA+GGG | 0.536524 | 1.3:+75945500 | MS.gene74982:CDS |
| CGAAAGTGTTACGGGTTCGC+GGG | 0.537233 | 1.3:+75945424 | MS.gene74982:CDS |
| CTCGTCACCGTAACCATCAC+CGG | 0.538428 | 1.3:-75945530 | None:intergenic |
| TATGTTGTGGCATGTGGAGA+GGG | 0.538481 | 1.3:+75945568 | MS.gene74982:CDS |
| GGAGGGAAAATTGCCGGTGA+TGG | 0.538673 | 1.3:+75945517 | MS.gene74982:CDS |
| TGCAAAAGAGGAACATGCTA+GGG | 0.539151 | 1.3:+75946351 | MS.gene74982:CDS |
| AAAGAAATCATCAAATCTGT+TGG | 0.539406 | 1.3:+75946397 | MS.gene74982:CDS |
| TTCTTTGATCGTGCTGATCG+AGG | 0.540804 | 1.3:+75945755 | MS.gene74982:CDS |
| CTGCAAAAGAGGAACATGCT+AGG | 0.545050 | 1.3:+75946350 | MS.gene74982:CDS |
| AGGAACGAAATCCAATGAAA+CGG | 0.556095 | 1.3:-75945333 | None:intergenic |
| AGGGACTTACCTCTCATGAA+TGG | 0.557672 | 1.3:+75946370 | MS.gene74982:CDS |
| TGTTACGGGTTCGCGGGAGA+AGG | 0.558314 | 1.3:+75945430 | MS.gene74982:CDS |
| AAGCTATTCGGAGTTGTTGG+AGG | 0.559085 | 1.3:+75945688 | MS.gene74982:CDS |
| AAGGCTGTTGATCCTTCTGT+GGG | 0.559583 | 1.3:+75945632 | MS.gene74982:CDS |
| GGAGTCCGAAGATGGAGATA+AGG | 0.561789 | 1.3:+75945654 | MS.gene74982:CDS |
| AAAGGCTGTTGATCCTTCTG+TGG | 0.562005 | 1.3:+75945631 | MS.gene74982:CDS |
| AGATCATTTCGGATCCGACC+CGG | 0.564462 | 1.3:+75945373 | MS.gene74982:CDS |
| ACAAGGCCTCTTGAAAATCA+GGG | 0.569588 | 1.3:-75946438 | None:intergenic |
| TGATTTACTTCCACTAATGG+AGG | 0.571191 | 1.3:+75946882 | MS.gene74982:CDS |
| GCGGTTTCCGAATTTGGTGA+CGG | 0.571307 | 1.3:+75945472 | MS.gene74982:CDS |
| GTTTCCGAATTTGGTGACGG+TGG | 0.573026 | 1.3:+75945475 | MS.gene74982:CDS |
| GAAGAGTGACGTGTCCATCC+GGG | 0.576363 | 1.3:-75945391 | None:intergenic |
| GATCAGCACGATCAAAGAAA+GGG | 0.577300 | 1.3:-75945751 | None:intergenic |
| TCGTGATGCTATGAAGTACC+TGG | 0.580547 | 1.3:+75947014 | MS.gene74982:CDS |
| GAACCGTATAAACGGACGGT+TGG | 0.580668 | 1.3:-75945260 | None:intergenic |
| ATCTTCGGACTCCCCACAGA+AGG | 0.580779 | 1.3:-75945644 | None:intergenic |
| GAAGGTGTTGCGGTTTATGG+AGG | 0.583239 | 1.3:+75945448 | MS.gene74982:CDS |
| GGACACGTCACTCTTCAAGT+TGG | 0.588350 | 1.3:+75945398 | MS.gene74982:CDS |
| TAAGAGTATGTTGTGGCATG+TGG | 0.595830 | 1.3:+75945562 | MS.gene74982:CDS |
| TACACATGCTAATCAAGTCC+AGG | 0.596922 | 1.3:-75947032 | None:intergenic |
| TATGATGGAACATGCTCGGA+TGG | 0.599363 | 1.3:+75945712 | MS.gene74982:CDS |
| GCGAGCAGAAAGATTATACA+AGG | 0.601678 | 1.3:-75946455 | None:intergenic |
| GATCTGATGCATGGAACACA+CGG | 0.611566 | 1.3:+75946955 | MS.gene74982:CDS |
| TCTTTGATGCCATTCATGAG+AGG | 0.624433 | 1.3:-75946379 | None:intergenic |
| CATTTCGGATCCGACCCGGA+TGG | 0.625020 | 1.3:+75945377 | MS.gene74982:CDS |
| AGGATCTTGTGAAACGTGGA+GGG | 0.632842 | 1.3:+75945606 | MS.gene74982:CDS |
| GAGGATCTTGTGAAACGTGG+AGG | 0.639878 | 1.3:+75945605 | MS.gene74982:CDS |
| GTATGTTGTGGCATGTGGAG+AGG | 0.640566 | 1.3:+75945567 | MS.gene74982:CDS |
| TAGACTTTAGCTACGTCGCG+AGG | 0.645767 | 1.3:-75945236 | None:intergenic |
| TGGTGAACCGTATAAACGGA+CGG | 0.648385 | 1.3:-75945264 | None:intergenic |
| AACTTACCAGCAATAACTTG+AGG | 0.649400 | 1.3:-75946477 | None:intergenic |
| AGGTTATGATGGAACATGCT+CGG | 0.651869 | 1.3:+75945708 | MS.gene74982:CDS |
| CGGTGATGGTTACGGTGACG+AGG | 0.652846 | 1.3:+75945531 | MS.gene74982:CDS |
| GTTCGCGGGAGAAGGTGTTG+CGG | 0.658726 | 1.3:+75945438 | MS.gene74982:CDS |
| GCGGAGGATCTTGTGAAACG+TGG | 0.670820 | 1.3:+75945602 | MS.gene74982:CDS |
| TGCAGCATAAGAGTATGTTG+TGG | 0.678190 | 1.3:+75945555 | MS.gene74982:CDS |
| AGTGACGTGTCCATCCGGGT+CGG | 0.687526 | 1.3:-75945387 | None:intergenic |
| TGTTGCGGTTTATGGAGGCG+CGG | 0.691904 | 1.3:+75945453 | MS.gene74982:CDS |
| AGGTACTTCATAGCATCACG+AGG | 0.741978 | 1.3:-75947012 | None:intergenic |
| AGGCTGTTGATCCTTCTGTG+GGG | 0.744546 | 1.3:+75945633 | MS.gene74982:CDS |
| GAAGTCGGAGAAATTAACGG+CGG | 0.794619 | 1.3:+75945205 | MS.gene74982:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATGTGTTTTTTAATA+TGG | + | chr1.3:75946794-75946813 | MS.gene74982:intron | 10.0% |
| !!! | TTTTATGTGTTTTTTAATAT+GGG | + | chr1.3:75946795-75946814 | MS.gene74982:intron | 10.0% |
| !! | TTATTAGTAAAAAGAAGAAA+TGG | - | chr1.3:75945784-75945803 | None:intergenic | 15.0% |
| !!! | GTAAGTAATTTTTTCATTTT+GGG | + | chr1.3:75946211-75946230 | MS.gene74982:intron | 15.0% |
| !!! | TATTAAAGTTTTTTCTAGAA+GGG | + | chr1.3:75946983-75947002 | MS.gene74982:CDS | 15.0% |
| !!! | TGTAAGTAATTTTTTCATTT+TGG | + | chr1.3:75946210-75946229 | MS.gene74982:intron | 15.0% |
| !!! | TTATTAAAGTTTTTTCTAGA+AGG | + | chr1.3:75946982-75947001 | MS.gene74982:CDS | 15.0% |
| !! | AATGTTCAACAAAATCAATA+TGG | - | chr1.3:75946126-75946145 | None:intergenic | 20.0% |
| !! | CATGTATTTATTTATCTTTC+GGG | + | chr1.3:75946304-75946323 | MS.gene74982:intron | 20.0% |
| !! | GCATGTATTTATTTATCTTT+CGG | + | chr1.3:75946303-75946322 | MS.gene74982:intron | 20.0% |
| !! | TTCATTTAGTACTTAATTGA+TGG | - | chr1.3:75945808-75945827 | None:intergenic | 20.0% |
| ! | AAAGAAATCATCAAATCTGT+TGG | + | chr1.3:75946397-75946416 | MS.gene74982:CDS | 25.0% |
| ! | ACAGATTAACAAAGAAATCA+AGG | - | chr1.3:75946821-75946840 | None:intergenic | 25.0% |
| !! | TAAGTAGTGAGAATACTTTT+TGG | - | chr1.3:75945287-75945306 | None:intergenic | 25.0% |
| AAACGAAGAACATGAAGAAA+AGG | - | chr1.3:75946092-75946111 | None:intergenic | 30.0% | |
| AATTTCCTTATCTCCATCTT+CGG | - | chr1.3:75945662-75945681 | None:intergenic | 30.0% | |
| CTCTACTCTACTCAATTTAT+AGG | + | chr1.3:75946651-75946670 | MS.gene74982:intron | 30.0% | |
| TCTTTGTTAATCTGTCATCA+GGG | + | chr1.3:75946826-75946845 | MS.gene74982:intron | 30.0% | |
| TTCTTTGTTAATCTGTCATC+AGG | + | chr1.3:75946825-75946844 | MS.gene74982:intron | 30.0% | |
| TTGTATCTCCTTGATTTCAA+TGG | + | chr1.3:75946717-75946736 | MS.gene74982:intron | 30.0% | |
| ! | AGTTGATTTACTTCCACTAA+TGG | + | chr1.3:75946879-75946898 | MS.gene74982:CDS | 30.0% |
| ! | CTCTTAGGAATAACTCATTT+TGG | + | chr1.3:75946503-75946522 | MS.gene74982:intron | 30.0% |
| ! | TCTATCTGTCAAGTTTTCAT+TGG | + | chr1.3:75946023-75946042 | MS.gene74982:intron | 30.0% |
| ! | TTCTTCATGTTCTTCGTTTT+GGG | + | chr1.3:75946093-75946112 | MS.gene74982:intron | 30.0% |
| ! | TTTCTTCATGTTCTTCGTTT+TGG | + | chr1.3:75946092-75946111 | MS.gene74982:intron | 30.0% |
| !! | GTCGAATTTTCATTTTAGAG+TGG | + | chr1.3:75946525-75946544 | MS.gene74982:intron | 30.0% |
| !! | TTTTTGGTGAACCGTATAAA+CGG | - | chr1.3:75945271-75945290 | None:intergenic | 30.0% |
| !!! | GCATCGATTCTATTTTATCT+TGG | - | chr1.3:75947062-75947081 | None:intergenic | 30.0% |
| AACTTACCAGCAATAACTTG+AGG | - | chr1.3:75946480-75946499 | None:intergenic | 35.0% | |
| AGGAACGAAATCCAATGAAA+CGG | - | chr1.3:75945336-75945355 | None:intergenic | 35.0% | |
| ATCTTTCGGGAAAAAATGCA+GGG | + | chr1.3:75946317-75946336 | MS.gene74982:intron | 35.0% | |
| CAAACAACATTTCAAGGAAG+AGG | + | chr1.3:75946855-75946874 | MS.gene74982:CDS | 35.0% | |
| CATAGCATTACTTCAAAGAC+AGG | - | chr1.3:75946280-75946299 | None:intergenic | 35.0% | |
| CATTGAAAATGTGTGCTAGA+AGG | + | chr1.3:75946142-75946161 | MS.gene74982:intron | 35.0% | |
| CTTTGTTAATCTGTCATCAG+GGG | + | chr1.3:75946827-75946846 | MS.gene74982:intron | 35.0% | |
| GAAACTCTACGAGATCATTT+CGG | + | chr1.3:75945362-75945381 | MS.gene74982:CDS | 35.0% | |
| GAAATGATCTCGTAGAGTTT+CGG | - | chr1.3:75945363-75945382 | None:intergenic | 35.0% | |
| TATCTTTCGGGAAAAAATGC+AGG | + | chr1.3:75946316-75946335 | MS.gene74982:intron | 35.0% | |
| TCTAAGAGCCATTGAAATCA+AGG | - | chr1.3:75946728-75946747 | None:intergenic | 35.0% | |
| TCTTCACAAATCCGTTTCAT+TGG | + | chr1.3:75945322-75945341 | MS.gene74982:CDS | 35.0% | |
| TGATTTACTTCCACTAATGG+AGG | + | chr1.3:75946882-75946901 | MS.gene74982:CDS | 35.0% | |
| TGTGAAGTCGGAGAAATTAA+CGG | + | chr1.3:75945202-75945221 | MS.gene74982:CDS | 35.0% | |
| !! | CATCAAATCTGTTGGTGTTT+TGG | + | chr1.3:75946405-75946424 | MS.gene74982:CDS | 35.0% |
| !! | CTGTCTTTGAAGTAATGCTA+TGG | + | chr1.3:75946278-75946297 | MS.gene74982:intron | 35.0% |
| !! | TTCATTTTGGGTACCTTGTT+TGG | + | chr1.3:75946223-75946242 | MS.gene74982:intron | 35.0% |
| !!! | CAATGTTTTGATCTGATGCA+TGG | + | chr1.3:75946946-75946965 | MS.gene74982:CDS | 35.0% |
| AAAATGTGTGCTAGAAGGTC+GGG | + | chr1.3:75946147-75946166 | MS.gene74982:intron | 40.0% | |
| ACAAGGCCTCTTGAAAATCA+GGG | - | chr1.3:75946441-75946460 | None:intergenic | 40.0% | |
| GAAAATGTGTGCTAGAAGGT+CGG | + | chr1.3:75946146-75946165 | MS.gene74982:intron | 40.0% | |
| GAAATTCGCGAGAAGCTATT+CGG | + | chr1.3:75945676-75945695 | MS.gene74982:CDS | 40.0% | |
| GATCAGCACGATCAAAGAAA+GGG | - | chr1.3:75945754-75945773 | None:intergenic | 40.0% | |
| GCAGTGCAAACAACATTTCA+AGG | + | chr1.3:75946849-75946868 | MS.gene74982:CDS | 40.0% | |
| GCGAGCAGAAAGATTATACA+AGG | - | chr1.3:75946458-75946477 | None:intergenic | 40.0% | |
| TACAAGGCCTCTTGAAAATC+AGG | - | chr1.3:75946442-75946461 | None:intergenic | 40.0% | |
| TACACATGCTAATCAAGTCC+AGG | - | chr1.3:75947035-75947054 | None:intergenic | 40.0% | |
| TATCCAACCGTCCGTTTATA+CGG | + | chr1.3:75945257-75945276 | MS.gene74982:CDS | 40.0% | |
| TCTTTGATGCCATTCATGAG+AGG | - | chr1.3:75946382-75946401 | None:intergenic | 40.0% | |
| TGCAAAAGAGGAACATGCTA+GGG | + | chr1.3:75946351-75946370 | MS.gene74982:CDS | 40.0% | |
| ! | AAAATTGCCGGTGATGGTTA+CGG | + | chr1.3:75945523-75945542 | MS.gene74982:CDS | 40.0% |
| ! | AGGTTATGATGGAACATGCT+CGG | + | chr1.3:75945708-75945727 | MS.gene74982:CDS | 40.0% |
| ! | GGGAAACTGTTTTGTGAAGT+CGG | + | chr1.3:75945190-75945209 | MS.gene74982:CDS | 40.0% |
| ! | TAAGAGTATGTTGTGGCATG+TGG | + | chr1.3:75945562-75945581 | MS.gene74982:CDS | 40.0% |
| ! | TGCAGCATAAGAGTATGTTG+TGG | + | chr1.3:75945555-75945574 | MS.gene74982:CDS | 40.0% |
| !! | AGTTGGATCCGAAAGTGTTA+CGG | + | chr1.3:75945415-75945434 | MS.gene74982:CDS | 40.0% |
| !! | TTCATGTTCTTCGTTTTGGG+TGG | + | chr1.3:75946096-75946115 | MS.gene74982:intron | 40.0% |
| !! | TTTTGGGTACCTTGTTTGGT+AGG | + | chr1.3:75946227-75946246 | MS.gene74982:intron | 40.0% |
| AAAGGCTGTTGATCCTTCTG+TGG | + | chr1.3:75945631-75945650 | MS.gene74982:CDS | 45.0% | |
| AACTCCAATGCCTCCATTAG+TGG | - | chr1.3:75946895-75946914 | None:intergenic | 45.0% | |
| AAGCTATTCGGAGTTGTTGG+AGG | + | chr1.3:75945688-75945707 | MS.gene74982:CDS | 45.0% | |
| AAGGCTGTTGATCCTTCTGT+GGG | + | chr1.3:75945632-75945651 | MS.gene74982:CDS | 45.0% | |
| AGGATCTTGTGAAACGTGGA+GGG | + | chr1.3:75945606-75945625 | MS.gene74982:CDS | 45.0% | |
| AGGGACTTACCTCTCATGAA+TGG | + | chr1.3:75946370-75946389 | MS.gene74982:CDS | 45.0% | |
| AGGTACTTCATAGCATCACG+AGG | - | chr1.3:75947015-75947034 | None:intergenic | 45.0% | |
| CGATCAGCACGATCAAAGAA+AGG | - | chr1.3:75945755-75945774 | None:intergenic | 45.0% | |
| CTGCAAAAGAGGAACATGCT+AGG | + | chr1.3:75946350-75946369 | MS.gene74982:CDS | 45.0% | |
| GAAGTCGGAGAAATTAACGG+CGG | + | chr1.3:75945205-75945224 | MS.gene74982:CDS | 45.0% | |
| GAGAAGCTATTCGGAGTTGT+TGG | + | chr1.3:75945685-75945704 | MS.gene74982:CDS | 45.0% | |
| GATCTGATGCATGGAACACA+CGG | + | chr1.3:75946955-75946974 | MS.gene74982:CDS | 45.0% | |
| GGAGTTGTTGGAGGTTATGA+TGG | + | chr1.3:75945697-75945716 | MS.gene74982:CDS | 45.0% | |
| TATGTTGTGGCATGTGGAGA+GGG | + | chr1.3:75945568-75945587 | MS.gene74982:CDS | 45.0% | |
| TCTCGTAGAGTTTCGGATGA+AGG | - | chr1.3:75945356-75945375 | None:intergenic | 45.0% | |
| TGCTGGTAAGTTCAGCTCTT+AGG | + | chr1.3:75946488-75946507 | MS.gene74982:intron | 45.0% | |
| TGGTGAACCGTATAAACGGA+CGG | - | chr1.3:75945267-75945286 | None:intergenic | 45.0% | |
| TGTGAAACGTGGAGGGAAAA+AGG | + | chr1.3:75945613-75945632 | MS.gene74982:CDS | 45.0% | |
| TTGGTAGGCTACTAGGCTTT+GGG | + | chr1.3:75946242-75946261 | MS.gene74982:intron | 45.0% | |
| TTTGGTAGGCTACTAGGCTT+TGG | + | chr1.3:75946241-75946260 | MS.gene74982:intron | 45.0% | |
| ! | ACCTTGTTTGGTAGGCTACT+AGG | + | chr1.3:75946235-75946254 | MS.gene74982:intron | 45.0% |
| ! | ACTTCCACTAATGGAGGCAT+TGG | + | chr1.3:75946888-75946907 | MS.gene74982:CDS | 45.0% |
| ! | TATGATGGAACATGCTCGGA+TGG | + | chr1.3:75945712-75945731 | MS.gene74982:CDS | 45.0% |
| ! | TCGTGATGCTATGAAGTACC+TGG | + | chr1.3:75947014-75947033 | MS.gene74982:CDS | 45.0% |
| ! | TTCTTTGATCGTGCTGATCG+AGG | + | chr1.3:75945755-75945774 | MS.gene74982:CDS | 45.0% |
| !! | GCTCTCTAAAGCTGCAAAAG+AGG | + | chr1.3:75946339-75946358 | MS.gene74982:CDS | 45.0% |
| !! | GTTGGATCCGAAAGTGTTAC+GGG | + | chr1.3:75945416-75945435 | MS.gene74982:CDS | 45.0% |
| !! | TCTGTTGGTGTTTTGGACTC+TGG | + | chr1.3:75946412-75946431 | MS.gene74982:CDS | 45.0% |
| !! | TGGAAGCCCTGATTTTCAAG+AGG | + | chr1.3:75946432-75946451 | MS.gene74982:CDS | 45.0% |
| !! | TTTCCGAATTTGGTGACGGT+GGG | + | chr1.3:75945476-75945495 | MS.gene74982:CDS | 45.0% |
| AGATCATTTCGGATCCGACC+CGG | + | chr1.3:75945373-75945392 | MS.gene74982:CDS | 50.0% | |
| AGGCTGTTGATCCTTCTGTG+GGG | + | chr1.3:75945633-75945652 | MS.gene74982:CDS | 50.0% | |
| GAACCGTATAAACGGACGGT+TGG | - | chr1.3:75945263-75945282 | None:intergenic | 50.0% | |
| GAGGATCTTGTGAAACGTGG+AGG | + | chr1.3:75945605-75945624 | MS.gene74982:CDS | 50.0% | |
| GCCTAGTAGCCTACCAAACA+AGG | - | chr1.3:75946239-75946258 | None:intergenic | 50.0% | |
| GGACACGTCACTCTTCAAGT+TGG | + | chr1.3:75945398-75945417 | MS.gene74982:CDS | 50.0% | |
| GGAGTCCGAAGATGGAGATA+AGG | + | chr1.3:75945654-75945673 | MS.gene74982:CDS | 50.0% | |
| GTATGTTGTGGCATGTGGAG+AGG | + | chr1.3:75945567-75945586 | MS.gene74982:CDS | 50.0% | |
| TAGACTTTAGCTACGTCGCG+AGG | - | chr1.3:75945239-75945258 | None:intergenic | 50.0% | |
| TGAAGAGTGACGTGTCCATC+CGG | - | chr1.3:75945395-75945414 | None:intergenic | 50.0% | |
| TGCTCGCCTCAAGTTATTGC+TGG | + | chr1.3:75946471-75946490 | MS.gene74982:CDS | 50.0% | |
| TGTGGAGGAGGGAAAATTGC+CGG | + | chr1.3:75945511-75945530 | MS.gene74982:CDS | 50.0% | |
| ! | GCGGTTTCCGAATTTGGTGA+CGG | + | chr1.3:75945472-75945491 | MS.gene74982:CDS | 50.0% |
| !! | AGGCTACTAGGCTTTGGGAA+AGG | + | chr1.3:75946247-75946266 | MS.gene74982:intron | 50.0% |
| !! | GAAGGTGTTGCGGTTTATGG+AGG | + | chr1.3:75945448-75945467 | MS.gene74982:CDS | 50.0% |
| !! | GGAGAAGGTGTTGCGGTTTA+TGG | + | chr1.3:75945445-75945464 | MS.gene74982:CDS | 50.0% |
| !! | GTTTCCGAATTTGGTGACGG+TGG | + | chr1.3:75945475-75945494 | MS.gene74982:CDS | 50.0% |
| !!! | ATGTGGAGAGGGTTTTGAGG+TGG | + | chr1.3:75945579-75945598 | MS.gene74982:CDS | 50.0% |
| !!! | TGTGGAGAGGGTTTTGAGGT+GGG | + | chr1.3:75945580-75945599 | MS.gene74982:CDS | 50.0% |
| ATCTTCGGACTCCCCACAGA+AGG | - | chr1.3:75945647-75945666 | None:intergenic | 55.0% | |
| CCGCGAACCCGTAACACTTT+CGG | - | chr1.3:75945426-75945445 | None:intergenic | 55.0% | |
| CTCGTCACCGTAACCATCAC+CGG | - | chr1.3:75945533-75945552 | None:intergenic | 55.0% | |
| GAAGAGTGACGTGTCCATCC+GGG | - | chr1.3:75945394-75945413 | None:intergenic | 55.0% | |
| GCGGAGGATCTTGTGAAACG+TGG | + | chr1.3:75945602-75945621 | MS.gene74982:CDS | 55.0% | |
| GGAGGGAAAATTGCCGGTGA+TGG | + | chr1.3:75945517-75945536 | MS.gene74982:CDS | 55.0% | |
| TGTTGCGGTTTATGGAGGCG+CGG | + | chr1.3:75945453-75945472 | MS.gene74982:CDS | 55.0% | |
| TTCTGTGGGGAGTCCGAAGA+TGG | + | chr1.3:75945646-75945665 | MS.gene74982:CDS | 55.0% | |
| ! | GGCATGTGGAGAGGGTTTTG+AGG | + | chr1.3:75945576-75945595 | MS.gene74982:CDS | 55.0% |
| !! | CCGAAAGTGTTACGGGTTCG+CGG | + | chr1.3:75945423-75945442 | MS.gene74982:CDS | 55.0% |
| !! | CGAAAGTGTTACGGGTTCGC+GGG | + | chr1.3:75945424-75945443 | MS.gene74982:CDS | 55.0% |
| AGTGACGTGTCCATCCGGGT+CGG | - | chr1.3:75945390-75945409 | None:intergenic | 60.0% | |
| CATTTCGGATCCGACCCGGA+TGG | + | chr1.3:75945377-75945396 | MS.gene74982:CDS | 60.0% | |
| CCGCCCACCGTCACCAAATT+CGG | - | chr1.3:75945482-75945501 | None:intergenic | 60.0% | |
| TGTTACGGGTTCGCGGGAGA+AGG | + | chr1.3:75945430-75945449 | MS.gene74982:CDS | 60.0% | |
| ! | CGGTGATGGTTACGGTGACG+AGG | + | chr1.3:75945531-75945550 | MS.gene74982:CDS | 60.0% |
| ! | GGAGGCGCGGTTTCCGAATT+TGG | + | chr1.3:75945466-75945485 | MS.gene74982:CDS | 60.0% |
| !! | AATTTGGTGACGGTGGGCGG+CGG | + | chr1.3:75945482-75945501 | MS.gene74982:CDS | 60.0% |
| !! | CCGAATTTGGTGACGGTGGG+CGG | + | chr1.3:75945479-75945498 | MS.gene74982:CDS | 60.0% |
| !! | GTTCGCGGGAGAAGGTGTTG+CGG | + | chr1.3:75945438-75945457 | MS.gene74982:CDS | 60.0% |
| !!! | GGAGAGGGTTTTGAGGTGGG+CGG | + | chr1.3:75945583-75945602 | MS.gene74982:CDS | 60.0% |
| !!! | GAGGGTTTTGAGGTGGGCGG+AGG | + | chr1.3:75945586-75945605 | MS.gene74982:CDS | 65.0% |
| ! | GGCGGTGGTGGTGTGGAGGA+GGG | + | chr1.3:75945500-75945519 | MS.gene74982:CDS | 70.0% |
| ! | CGGCGGTGGTGGTGTGGAGG+AGG | + | chr1.3:75945499-75945518 | MS.gene74982:CDS | 75.0% |
| !! | TTGGTGACGGTGGGCGGCGG+TGG | + | chr1.3:75945485-75945504 | MS.gene74982:CDS | 75.0% |
| ! | GTGACGGTGGGCGGCGGTGG+TGG | + | chr1.3:75945488-75945507 | MS.gene74982:CDS | 80.0% |
| !! | GGGCGGCGGTGGTGGTGTGG+AGG | + | chr1.3:75945496-75945515 | MS.gene74982:CDS | 80.0% |
| !! | GGTGGGCGGCGGTGGTGGTG+TGG | + | chr1.3:75945493-75945512 | MS.gene74982:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 75945188 | 75947101 | 75945188 | ID=MS.gene74982 |
| chr1.3 | mRNA | 75945188 | 75947101 | 75945188 | ID=MS.gene74982.t1;Parent=MS.gene74982 |
| chr1.3 | exon | 75945188 | 75945776 | 75945188 | ID=MS.gene74982.t1.exon1;Parent=MS.gene74982.t1 |
| chr1.3 | CDS | 75945188 | 75945776 | 75945188 | ID=cds.MS.gene74982.t1;Parent=MS.gene74982.t1 |
| chr1.3 | exon | 75946338 | 75946492 | 75946338 | ID=MS.gene74982.t1.exon2;Parent=MS.gene74982.t1 |
| chr1.3 | CDS | 75946338 | 75946492 | 75946338 | ID=cds.MS.gene74982.t1;Parent=MS.gene74982.t1 |
| chr1.3 | exon | 75946847 | 75947101 | 75946847 | ID=MS.gene74982.t1.exon3;Parent=MS.gene74982.t1 |
| chr1.3 | CDS | 75946847 | 75947101 | 75946847 | ID=cds.MS.gene74982.t1;Parent=MS.gene74982.t1 |
| Gene Sequence |
| Protein sequence |
