AlfalfaGEDB | MS.gene74982

M. sativa cultivar XinJiangDaYe / MS.gene74982

KEGG: -
GO: -
PFAM: PF01814.26

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74982.t1	XP_013470260.1	98.5	331	5	0	1	331	1	331	1.80E-183	651.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74982.t1	A0A072VS93	98.5	331	5	0	1	331	1	331	1.3e-183	651.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene74982	0.81019	1.30E-50	-1.69E-46
MS.gene049680	MS.gene74982	0.807588	4.70E-50	-1.69E-46
MS.gene049807	MS.gene74982	0.805872	1.08E-49	-1.69E-46
MS.gene049821	MS.gene74982	0.808373	3.20E-50	-1.69E-46
MS.gene049863	MS.gene74982	0.800459	1.43E-48	-1.69E-46
MS.gene050273	MS.gene74982	0.800542	1.37E-48	-1.69E-46
MS.gene050559	MS.gene74982	0.820086	8.26E-53	-1.69E-46
MS.gene050561	MS.gene74982	0.80351	3.37E-49	-1.69E-46
MS.gene050646	MS.gene74982	0.809172	2.16E-50	-1.69E-46
MS.gene050945	MS.gene74982	0.842346	2.74E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74982.t1	MTR_1g111960	98.489	331	5	0	1	331	1	331	0.0	671
MS.gene74982.t1	MTR_1g050385	59.483	348	125	2	1	332	1	348	8.45e-151	427

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74982.t1	AT3G54290	48.603	358	139	5	1	327	1	344	2.54e-112	330

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Find 92 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGCCGGTGATGGTTA+CGG	0.483325	1.3:+75945523	MS.gene74982:CDS
AAAGAAATCATCAAATCTGT+TGG	0.539406	1.3:+75946397	MS.gene74982:CDS
AAAGGCTGTTGATCCTTCTG+TGG	0.562005	1.3:+75945631	MS.gene74982:CDS
AACTCCAATGCCTCCATTAG+TGG	0.389254	1.3:-75946892	None:intergenic
AACTTACCAGCAATAACTTG+AGG	0.649400	1.3:-75946477	None:intergenic
AAGCTATTCGGAGTTGTTGG+AGG	0.559085	1.3:+75945688	MS.gene74982:CDS
AAGGCTGTTGATCCTTCTGT+GGG	0.559583	1.3:+75945632	MS.gene74982:CDS
AATTTCCTTATCTCCATCTT+CGG	0.441143	1.3:-75945659	None:intergenic
AATTTGGTGACGGTGGGCGG+CGG	0.505401	1.3:+75945482	MS.gene74982:CDS
ACAAGGCCTCTTGAAAATCA+GGG	0.569588	1.3:-75946438	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACGAAGAACATGAAGAAA+AGG	-	chr1.3:75946092-75946111	None:intergenic	30.0%
AATTTCCTTATCTCCATCTT+CGG	-	chr1.3:75945662-75945681	None:intergenic	30.0%
CTCTACTCTACTCAATTTAT+AGG	+	chr1.3:75946651-75946670	MS.gene74982:intron	30.0%
TCTTTGTTAATCTGTCATCA+GGG	+	chr1.3:75946826-75946845	MS.gene74982:intron	30.0%
TTCTTTGTTAATCTGTCATC+AGG	+	chr1.3:75946825-75946844	MS.gene74982:intron	30.0%
TTGTATCTCCTTGATTTCAA+TGG	+	chr1.3:75946717-75946736	MS.gene74982:intron	30.0%
AACTTACCAGCAATAACTTG+AGG	-	chr1.3:75946480-75946499	None:intergenic	35.0%
AGGAACGAAATCCAATGAAA+CGG	-	chr1.3:75945336-75945355	None:intergenic	35.0%
ATCTTTCGGGAAAAAATGCA+GGG	+	chr1.3:75946317-75946336	MS.gene74982:intron	35.0%
CAAACAACATTTCAAGGAAG+AGG	+	chr1.3:75946855-75946874	MS.gene74982:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	75945188	75947101	75945188	ID=MS.gene74982
chr1.3	mRNA	75945188	75947101	75945188	ID=MS.gene74982.t1;Parent=MS.gene74982
chr1.3	exon	75945188	75945776	75945188	ID=MS.gene74982.t1.exon1;Parent=MS.gene74982.t1
chr1.3	CDS	75945188	75945776	75945188	ID=cds.MS.gene74982.t1;Parent=MS.gene74982.t1
chr1.3	exon	75946338	75946492	75946338	ID=MS.gene74982.t1.exon2;Parent=MS.gene74982.t1
chr1.3	CDS	75946338	75946492	75946338	ID=cds.MS.gene74982.t1;Parent=MS.gene74982.t1
chr1.3	exon	75946847	75947101	75946847	ID=MS.gene74982.t1.exon3;Parent=MS.gene74982.t1
chr1.3	CDS	75946847	75947101	75946847	ID=cds.MS.gene74982.t1;Parent=MS.gene74982.t1

Gene Sequence

>MS.gene74982

ATGGGAAACTGTTTTGTGAAGTCGGAGAAATTAACGGCGGAGATTATACCTCGCGACGTAGCTAAAGTCTATCCAACCGTCCGTTTATACGGTTCACCAAAAAGTATTCTCACTACTTACATTCGTTTCGCTCTTCTTCACAAATCCGTTTCATTGGATTTCGTTCCTTCATCCGAAACTCTACGAGATCATTTCGGATCCGACCCGGATGGACACGTCACTCTTCAAGTTGGATCCGAAAGTGTTACGGGTTCGCGGGAGAAGGTGTTGCGGTTTATGGAGGCGCGGTTTCCGAATTTGGTGACGGTGGGCGGCGGTGGTGGTGTGGAGGAGGGAAAATTGCCGGTGATGGTTACGGTGACGAGGTTGCAGCATAAGAGTATGTTGTGGCATGTGGAGAGGGTTTTGAGGTGGGCGGAGGATCTTGTGAAACGTGGAGGGAAAAAGGCTGTTGATCCTTCTGTGGGGAGTCCGAAGATGGAGATAAGGAAATTCGCGAGAAGCTATTCGGAGTTGTTGGAGGTTATGATGGAACATGCTCGGATGGAAGAGACTCTTCTCTTCCCTTTCTTTGATCGTGCTGATCGAGGTAACCATTTCTTCTTTTTACTAATAAACCATCAATTAAGTACTAAATGAACTATATGAAATTGAAATTCGTCTCTTTTGTCGATAAAGTATATGAAATTTGTAAATTTAGTTAACATCTTCATAGCATAGATAACTGAATAATAAATTGAACAAATTGTGATAGTTTTTAATTTTGTATAGATTTTGTTACATTTTATCATTTGTGTGAATTTTTTTTTGCAGTATCTGTTTAAAAAGTTTTTTCTCTATCTGTCAAGTTTTCATTGGTTTATTTGTATTTGTTGTGTGAAAAAAATGATAAGTTGATTTTCCTTTTCTTCATGTTCTTCGTTTTGGGTGGATTTCCATATTGATTTTGTTGAACATTGAAAATGTGTGCTAGAAGGTCGGGCTGTAGTATTGATTAATTGTTAAATTAGTGTTTTTTGTTTTGTAAGTAATTTTTTCATTTTGGGTACCTTGTTTGGTAGGCTACTAGGCTTTGGGAAAGGAAGTTTACCTGTCTTTGAAGTAATGCTATGGATGCATGTATTTATTTATCTTTCGGGAAAAAATGCAGGGCTCTCTAAAGCTGCAAAAGAGGAACATGCTAGGGACTTACCTCTCATGAATGGCATCAAAGAAATCATCAAATCTGTTGGTGTTTTGGACTCTGGAAGCCCTGATTTTCAAGAGGCCTTGTATAATCTTTCTGCTCGCCTCAAGTTATTGCTGGTAAGTTCAGCTCTTAGGAATAACTCATTTTGGTCGAATTTTCATTTTAGAGTGGAAAGTAAGTAATTTCAATCACTGACAAATAAATTCATAGTTGATATTACATGCACGTGCATACGAACACATAGACATGAATGAAGTAACTATTAATAATCTCACTCTACTCTACTCAATTTATAGGAGTTTGATGTCATCGATTTTGTTGTTATAATTTCGATTATATTTTGTATCTCCTTGATTTCAATGGCTCTTAGAACATTACTGTTAATAGCATATCTGTAGTCAATTTGCGATCTTCTGAATTTTATGTGTTTTTTAATATGGGCCTTGATTTCTTTGTTAATCTGTCATCAGGGGCAGTGCAAACAACATTTCAAGGAAGAGGAAGTTGATTTACTTCCACTAATGGAGGCATTGGAGTTAAGCAAAGATCAAGAAGAGACTGCACTAGATCAATGTTTTGATCTGATGCATGGAACACACGGTCGTTTATTAAAGTTTTTTCTAGAAGGGCTTCAACCTCGTGATGCTATGAAGTACCTGGACTTGATTAGCATGTGTAGTAACCAAGATAAAATAGAATCGATGCTCCAAATGATAGTTAAGTGA

Protein sequence

>MS.gene74982.t1

MGNCFVKSEKLTAEIIPRDVAKVYPTVRLYGSPKSILTTYIRFALLHKSVSLDFVPSSETLRDHFGSDPDGHVTLQVGSESVTGSREKVLRFMEARFPNLVTVGGGGGVEEGKLPVMVTVTRLQHKSMLWHVERVLRWAEDLVKRGGKKAVDPSVGSPKMEIRKFARSYSELLEVMMEHARMEETLLFPFFDRADRGLSKAAKEEHARDLPLMNGIKEIIKSVGVLDSGSPDFQEALYNLSARLKLLLGQCKQHFKEEEVDLLPLMEALELSKDQEETALDQCFDLMHGTHGRLLKFFLEGLQPRDAMKYLDLISMCSNQDKIESMLQMIVK