Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75909.t1 | XP_027339654.1 | 68.6 | 172 | 51 | 2 | 11 | 182 | 441 | 609 | 5.30E-52 | 214.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75909.t1 | F4JT76 | 51.2 | 172 | 81 | 2 | 11 | 182 | 467 | 635 | 3.5e-36 | 152.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75909.t1 | A0A3Q7XYE2 | 69.8 | 172 | 49 | 2 | 11 | 182 | 443 | 611 | 1.1e-51 | 212.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene75909 | 0.860462 | 2.03E-63 | -1.69E-46 |
| MS.gene049272 | MS.gene75909 | 0.819886 | 9.17E-53 | -1.69E-46 |
| MS.gene049343 | MS.gene75909 | 0.815725 | 7.98E-52 | -1.69E-46 |
| MS.gene049404 | MS.gene75909 | 0.815876 | 7.38E-52 | -1.69E-46 |
| MS.gene049825 | MS.gene75909 | 0.823812 | 1.13E-53 | -1.69E-46 |
| MS.gene049850 | MS.gene75909 | 0.804964 | 1.68E-49 | -1.69E-46 |
| MS.gene049873 | MS.gene75909 | 0.825098 | 5.64E-54 | -1.69E-46 |
| MS.gene049977 | MS.gene75909 | 0.80417 | 2.46E-49 | -1.69E-46 |
| MS.gene050026 | MS.gene75909 | 0.812803 | 3.53E-51 | -1.69E-46 |
| MS.gene050201 | MS.gene75909 | 0.80058 | 1.35E-48 | -1.69E-46 |
| MS.gene050273 | MS.gene75909 | 0.807472 | 4.97E-50 | -1.69E-46 |
| MS.gene050355 | MS.gene75909 | 0.824142 | 9.47E-54 | -1.69E-46 |
| MS.gene050559 | MS.gene75909 | 0.833684 | 4.63E-56 | -1.69E-46 |
| MS.gene050561 | MS.gene75909 | 0.826562 | 2.53E-54 | -1.69E-46 |
| MS.gene050562 | MS.gene75909 | 0.821133 | 4.75E-53 | -1.69E-46 |
| MS.gene050799 | MS.gene75909 | 0.801775 | 7.68E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene75909 | 0.821295 | 4.36E-53 | -1.69E-46 |
| MS.gene051594 | MS.gene75909 | 0.81313 | 2.99E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene75909 | 0.824236 | 9.00E-54 | -1.69E-46 |
| MS.gene051957 | MS.gene75909 | 0.800231 | 1.59E-48 | -1.69E-46 |
| MS.gene052037 | MS.gene75909 | 0.811515 | 6.74E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene75909 | 0.851405 | 9.07E-61 | -1.69E-46 |
| MS.gene052582 | MS.gene75909 | 0.826156 | 3.17E-54 | -1.69E-46 |
| MS.gene052584 | MS.gene75909 | 0.836006 | 1.21E-56 | -1.69E-46 |
| MS.gene052773 | MS.gene75909 | 0.801848 | 7.42E-49 | -1.69E-46 |
| MS.gene052867 | MS.gene75909 | 0.806855 | 6.72E-50 | -1.69E-46 |
| MS.gene053145 | MS.gene75909 | 0.808187 | 3.50E-50 | -1.69E-46 |
| MS.gene053166 | MS.gene75909 | 0.813058 | 3.10E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene75909 | 0.817423 | 3.32E-52 | -1.69E-46 |
| MS.gene05414 | MS.gene75909 | 0.808761 | 2.64E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene75909 | 0.848362 | 6.43E-60 | -1.69E-46 |
| MS.gene054236 | MS.gene75909 | 0.824469 | 7.94E-54 | -1.69E-46 |
| MS.gene05423 | MS.gene75909 | 0.84727 | 1.29E-59 | -1.69E-46 |
| MS.gene054291 | MS.gene75909 | -0.803631 | 3.18E-49 | -1.69E-46 |
| MS.gene05458 | MS.gene75909 | 0.800479 | 1.41E-48 | -1.69E-46 |
| MS.gene054651 | MS.gene75909 | 0.827446 | 1.56E-54 | -1.69E-46 |
| MS.gene054775 | MS.gene75909 | 0.803168 | 3.96E-49 | -1.69E-46 |
| MS.gene055166 | MS.gene75909 | 0.808296 | 3.32E-50 | -1.69E-46 |
| MS.gene055228 | MS.gene75909 | 0.82882 | 7.27E-55 | -1.69E-46 |
| MS.gene055586 | MS.gene75909 | 0.813059 | 3.10E-51 | -1.69E-46 |
| MS.gene055589 | MS.gene75909 | 0.802862 | 4.59E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene75909 | 0.82273 | 2.03E-53 | -1.69E-46 |
| MS.gene056050 | MS.gene75909 | 0.822919 | 1.83E-53 | -1.69E-46 |
| MS.gene056162 | MS.gene75909 | 0.800042 | 1.74E-48 | -1.69E-46 |
| MS.gene056506 | MS.gene75909 | 0.806033 | 1.00E-49 | -1.69E-46 |
| MS.gene056776 | MS.gene75909 | 0.81094 | 8.98E-51 | -1.69E-46 |
| MS.gene05686 | MS.gene75909 | 0.817411 | 3.34E-52 | -1.69E-46 |
| MS.gene057026 | MS.gene75909 | 0.803063 | 4.17E-49 | -1.69E-46 |
| MS.gene057027 | MS.gene75909 | 0.806463 | 8.13E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene75909 | 0.821017 | 5.05E-53 | -1.69E-46 |
| MS.gene057208 | MS.gene75909 | 0.820115 | 8.14E-53 | -1.69E-46 |
| MS.gene057314 | MS.gene75909 | 0.806912 | 6.53E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene75909 | 0.80934 | 1.99E-50 | -1.69E-46 |
| MS.gene058037 | MS.gene75909 | 0.851998 | 6.16E-61 | -1.69E-46 |
| MS.gene058625 | MS.gene75909 | 0.85843 | 8.28E-63 | -1.69E-46 |
| MS.gene058979 | MS.gene75909 | 0.823935 | 1.06E-53 | -1.69E-46 |
| MS.gene059015 | MS.gene75909 | 0.808518 | 2.98E-50 | -1.69E-46 |
| MS.gene059272 | MS.gene75909 | 0.826114 | 3.24E-54 | -1.69E-46 |
| MS.gene05954 | MS.gene75909 | 0.850368 | 1.78E-60 | -1.69E-46 |
| MS.gene059584 | MS.gene75909 | 0.802003 | 6.89E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene75909 | 0.823506 | 1.34E-53 | -1.69E-46 |
| MS.gene060322 | MS.gene75909 | 0.81791 | 2.58E-52 | -1.69E-46 |
| MS.gene060521 | MS.gene75909 | 0.820477 | 6.72E-53 | -1.69E-46 |
| MS.gene060634 | MS.gene75909 | -0.820979 | 5.15E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75909.t1 | MTR_2g047908 | 68.023 | 172 | 52 | 2 | 11 | 182 | 447 | 615 | 5.79e-60 | 201 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75909.t1 | AT4G19490 | 51.163 | 172 | 81 | 2 | 11 | 182 | 467 | 635 | 5.61e-37 | 135 |
| MS.gene75909.t1 | AT4G19490 | 51.163 | 172 | 81 | 2 | 11 | 182 | 467 | 635 | 5.61e-37 | 135 |
Find 32 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTTCTTTGCGGTGAATA+TGG | 0.269801 | 2.1:-43626718 | None:intergenic |
| GAGGACTTCATTGCAGTTAT+AGG | 0.306015 | 2.1:+43628310 | MS.gene75909:CDS |
| TTTGTGATTGCAGGCACATT+TGG | 0.361631 | 2.1:+43626543 | MS.gene75909:intron |
| TCTTAGGGAGACTATGTATT+GGG | 0.385098 | 2.1:+43626386 | None:intergenic |
| CTAACAGATTGGTGGAAGAT+TGG | 0.387747 | 2.1:+43628421 | MS.gene75909:intron |
| TAACAGATTGGTGGAAGATT+GGG | 0.423692 | 2.1:+43628422 | MS.gene75909:intron |
| ACCATGAACCTCGCTTTCTT+CGG | 0.436864 | 2.1:-43626683 | None:intergenic |
| CCTATGGCATCATTTCTTTG+CGG | 0.468501 | 2.1:-43626727 | None:intergenic |
| TCCGAAGAAAGCGAGGTTCA+TGG | 0.478169 | 2.1:+43626682 | MS.gene75909:CDS |
| TTCTTAGGGAGACTATGTAT+TGG | 0.478379 | 2.1:+43626385 | None:intergenic |
| GTGATACTGCTCACAGAAGA+TGG | 0.485315 | 2.1:+43628200 | MS.gene75909:CDS |
| GTTGCTGCAGCAATTGCTTG+TGG | 0.512434 | 2.1:+43626640 | MS.gene75909:CDS |
| TCACCTTGTATATCTACTAA+AGG | 0.518412 | 2.1:-43628895 | None:intergenic |
| ATTGCAGGCACATTTGGTGC+GGG | 0.520540 | 2.1:+43626549 | MS.gene75909:intron |
| AGCATATGTATTCTGTGTCA+AGG | 0.527620 | 2.1:+43626424 | MS.gene75909:CDS |
| GAAGATGGGCAAAGCTTCTG+AGG | 0.536203 | 2.1:+43628215 | MS.gene75909:CDS |
| TCCCTGAAAAGAGAGACCTA+TGG | 0.541882 | 2.1:-43626743 | None:intergenic |
| GTTGCTCAAAATCCCCTCAA+TGG | 0.551742 | 2.1:-43626590 | None:intergenic |
| AGATTGGGATACAGCATCGA+TGG | 0.561671 | 2.1:+43628437 | MS.gene75909:CDS |
| AGGCCTTTAGTAGATATACA+AGG | 0.564998 | 2.1:+43628892 | MS.gene75909:intron |
| GCATATGTATTCTGTGTCAA+GGG | 0.580748 | 2.1:+43626425 | MS.gene75909:CDS |
| CATTCAAACTAACAGATTGG+TGG | 0.591860 | 2.1:+43628413 | MS.gene75909:intron |
| TGATACTGCTCACAGAAGAT+GGG | 0.598497 | 2.1:+43628201 | MS.gene75909:CDS |
| CCGCAAAGAAATGATGCCAT+AGG | 0.600791 | 2.1:+43626727 | MS.gene75909:CDS |
| GATTGGGATACAGCATCGAT+GGG | 0.628768 | 2.1:+43628438 | MS.gene75909:CDS |
| GATTGCAGGCACATTTGGTG+CGG | 0.637237 | 2.1:+43626548 | MS.gene75909:intron |
| GCAAAGCTTCTGAGGGATCG+TGG | 0.638563 | 2.1:+43628223 | MS.gene75909:CDS |
| AAGATGGGCAAAGCTTCTGA+GGG | 0.648096 | 2.1:+43628216 | MS.gene75909:CDS |
| AGAAACATCCGAAGAAAGCG+AGG | 0.659844 | 2.1:+43626675 | MS.gene75909:CDS |
| AGAAATTGCAGAGATTGCAG+AGG | 0.663419 | 2.1:-43628268 | None:intergenic |
| GACAGTGCAGTCATACACCA+AGG | 0.719412 | 2.1:+43628460 | MS.gene75909:CDS |
| ATACATTGACAGCATCAACG+AGG | 0.785944 | 2.1:+43628291 | MS.gene75909:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTATTATGTAGTTAATT+AGG | + | chr2.1:43627228-43627247 | MS.gene75909:intron | 10.0% |
| !! | ACAACTAAATATAAAAGTAA+TGG | - | chr2.1:43628092-43628111 | None:intergenic | 15.0% |
| !! | ATAATTCTATTGTAATTTGA+CGG | + | chr2.1:43626943-43626962 | MS.gene75909:intron | 15.0% |
| !! | ATGTTAATTTCATTTGTATT+TGG | + | chr2.1:43628594-43628613 | MS.gene75909:intron | 15.0% |
| !! | TCTTATTATTTAATCCTAAT+GGG | - | chr2.1:43627278-43627297 | None:intergenic | 15.0% |
| !!! | AAAAAATTCAGGTTAAATAT+TGG | + | chr2.1:43626802-43626821 | MS.gene75909:intron | 15.0% |
| !!! | ATTCAACAAATATTTTTTTG+AGG | - | chr2.1:43628498-43628517 | None:intergenic | 15.0% |
| !!! | TCTCTTTATTTGTATATAAA+GGG | + | chr2.1:43627326-43627345 | MS.gene75909:intron | 15.0% |
| !!! | TTCTCTTTATTTGTATATAA+AGG | + | chr2.1:43627325-43627344 | MS.gene75909:intron | 15.0% |
| !! | AAATAATAAGAGGCTAATTA+GGG | + | chr2.1:43627287-43627306 | MS.gene75909:intron | 20.0% |
| !! | AACCTACTTTATAAAATGAT+AGG | - | chr2.1:43627590-43627609 | None:intergenic | 20.0% |
| !! | AATTATACAAGTATATCTAG+TGG | - | chr2.1:43628018-43628037 | None:intergenic | 20.0% |
| !! | AATTTAGTATTAGAAAGCTA+AGG | - | chr2.1:43628850-43628869 | None:intergenic | 20.0% |
| !! | ACTAGATATACTTGTATAAT+TGG | + | chr2.1:43628017-43628036 | MS.gene75909:intron | 20.0% |
| !! | AGATGGTAATTACAAAAATA+GGG | - | chr2.1:43627482-43627501 | None:intergenic | 20.0% |
| !! | ATACTTGTATAATTGGTAAA+TGG | + | chr2.1:43628024-43628043 | MS.gene75909:intron | 20.0% |
| !! | CATTAGGATTAAATAATAAG+AGG | + | chr2.1:43627277-43627296 | MS.gene75909:intron | 20.0% |
| !! | CCTAAATATAATATGGATAA+CGG | + | chr2.1:43627969-43627988 | MS.gene75909:intron | 20.0% |
| !! | CTCTTATTATTTAATCCTAA+TGG | - | chr2.1:43627279-43627298 | None:intergenic | 20.0% |
| !! | TAAATAATAAGAGGCTAATT+AGG | + | chr2.1:43627286-43627305 | MS.gene75909:intron | 20.0% |
| !! | TTGATTCTTTCTTTATTGAA+CGG | + | chr2.1:43627018-43627037 | MS.gene75909:intron | 20.0% |
| !!! | AAAACAATGTTGTTTATTGA+AGG | + | chr2.1:43628660-43628679 | MS.gene75909:intron | 20.0% |
| !!! | CTCTTTATTTGTATATAAAG+GGG | + | chr2.1:43627327-43627346 | MS.gene75909:intron | 20.0% |
| !!! | GTATGTACATATTTTCATTT+TGG | + | chr2.1:43628337-43628356 | MS.gene75909:intron | 20.0% |
| ! | AGTAGGTTTAAAAAACGAAA+TGG | + | chr2.1:43627602-43627621 | MS.gene75909:intron | 25.0% |
| ! | CAGATGGTAATTACAAAAAT+AGG | - | chr2.1:43627483-43627502 | None:intergenic | 25.0% |
| ! | CCGTTATCCATATTATATTT+AGG | - | chr2.1:43627972-43627991 | None:intergenic | 25.0% |
| ! | CTAACAAGTCAAAAAAATTC+AGG | + | chr2.1:43626791-43626810 | MS.gene75909:CDS | 25.0% |
| ! | GATAAGATAAAACATTTGAG+AGG | - | chr2.1:43627837-43627856 | None:intergenic | 25.0% |
| ! | GTAGGTTTAAAAAACGAAAT+GGG | + | chr2.1:43627603-43627622 | MS.gene75909:intron | 25.0% |
| ! | GTATGCTATCATTAACTAAT+TGG | - | chr2.1:43628817-43628836 | None:intergenic | 25.0% |
| ! | TATAGAATATAGATGGCTTA+CGG | - | chr2.1:43627706-43627725 | None:intergenic | 25.0% |
| ! | TGAATGAAAATAGTAGTAGA+AGG | - | chr2.1:43627446-43627465 | None:intergenic | 25.0% |
| ! | TGAGGAAATATTAATAACCT+TGG | - | chr2.1:43628480-43628499 | None:intergenic | 25.0% |
| ! | TTGAGAACATCAAACAAATA+GGG | - | chr2.1:43628117-43628136 | None:intergenic | 25.0% |
| ! | TTTGAGAACATCAAACAAAT+AGG | - | chr2.1:43628118-43628137 | None:intergenic | 25.0% |
| ! | TTTGATGTTCTCAAAAAATC+TGG | + | chr2.1:43628123-43628142 | MS.gene75909:intron | 25.0% |
| ! | TTTGTATATAAAGGGGAATT+AGG | + | chr2.1:43627334-43627353 | MS.gene75909:intron | 25.0% |
| !! | ATGTAGTGTATTTCTTTTAC+TGG | + | chr2.1:43627910-43627929 | MS.gene75909:intron | 25.0% |
| !! | GTCCTATCATTTTATAAAGT+AGG | + | chr2.1:43627585-43627604 | MS.gene75909:intron | 25.0% |
| !!! | AATTCTAATTCTGCTTTTTC+AGG | + | chr2.1:43628872-43628891 | MS.gene75909:intron | 25.0% |
| !!! | GAATTTTTTTGACTTGTTAG+AGG | - | chr2.1:43626791-43626810 | None:intergenic | 25.0% |
| !!! | GATTGAACTTTTGAGTTAAT+TGG | - | chr2.1:43627134-43627153 | None:intergenic | 25.0% |
| !!! | GTTTTTAGTATAAAACTGAC+AGG | - | chr2.1:43627554-43627573 | None:intergenic | 25.0% |
| !!! | TTTTTCTTTTTTGTGATTGC+AGG | + | chr2.1:43626534-43626553 | MS.gene75909:intron | 25.0% |
| AAACTAACGTTGAATCAGTA+TGG | + | chr2.1:43627804-43627823 | MS.gene75909:intron | 30.0% | |
| AACTGTCAAACTAATAAACG+TGG | - | chr2.1:43628570-43628589 | None:intergenic | 30.0% | |
| AAGAATGAAGATGAAACAGA+TGG | - | chr2.1:43627499-43627518 | None:intergenic | 30.0% | |
| AATAAACGTGGAGGAAAATA+TGG | - | chr2.1:43628558-43628577 | None:intergenic | 30.0% | |
| ACAACTAAACTTCAGTAACA+TGG | - | chr2.1:43626457-43626476 | None:intergenic | 30.0% | |
| ACCAATATGGATTCCATAAA+GGG | - | chr2.1:43627075-43627094 | None:intergenic | 30.0% | |
| ACTCAAAAGTTCAATCTGAT+AGG | + | chr2.1:43627138-43627157 | MS.gene75909:intron | 30.0% | |
| AGTTAATGATAGCATACACA+AGG | + | chr2.1:43628820-43628839 | MS.gene75909:intron | 30.0% | |
| ATCAAACAGTTCAAACTTAG+AGG | - | chr2.1:43627003-43627022 | None:intergenic | 30.0% | |
| CCATCTATATTCTATAGCTT+GGG | + | chr2.1:43627710-43627729 | MS.gene75909:intron | 30.0% | |
| CTGCTCTCCTAAATATAATA+TGG | + | chr2.1:43627962-43627981 | MS.gene75909:intron | 30.0% | |
| GAATGAAAACTTTCCCTTTA+TGG | + | chr2.1:43627059-43627078 | MS.gene75909:intron | 30.0% | |
| TACCAATATGGATTCCATAA+AGG | - | chr2.1:43627076-43627095 | None:intergenic | 30.0% | |
| TATCATTAACTAATTGGCCA+GGG | - | chr2.1:43628811-43628830 | None:intergenic | 30.0% | |
| TCAAGTAGATTATTAGTGAG+TGG | + | chr2.1:43627252-43627271 | MS.gene75909:intron | 30.0% | |
| TCACCTTGTATATCTACTAA+AGG | - | chr2.1:43628898-43628917 | None:intergenic | 30.0% | |
| TGTCATTGTGGTTCAATTAT+AGG | + | chr2.1:43627525-43627544 | MS.gene75909:intron | 30.0% | |
| TTGGTCAACTGACATATATT+CGG | + | chr2.1:43628613-43628632 | MS.gene75909:intron | 30.0% | |
| TTTATGGAATCCATATTGGT+AGG | + | chr2.1:43627075-43627094 | MS.gene75909:intron | 30.0% | |
| ! | ACACACAAAAGGTTTTTGTT+AGG | + | chr2.1:43627180-43627199 | MS.gene75909:intron | 30.0% |
| ! | CAATCTGTTAGTTTGAATGT+GGG | - | chr2.1:43628412-43628431 | None:intergenic | 30.0% |
| !! | TACTGATTCAACGTTAGTTT+AGG | - | chr2.1:43627804-43627823 | None:intergenic | 30.0% |
| !!! | TAGTCATTTTTCCGTTTTAG+AGG | + | chr2.1:43627876-43627895 | MS.gene75909:intron | 30.0% |
| AAATGGGACAAAATTGTGAG+AGG | + | chr2.1:43627619-43627638 | MS.gene75909:intron | 35.0% | |
| AAGTTCAATCTGATAGGTGA+AGG | + | chr2.1:43627144-43627163 | MS.gene75909:intron | 35.0% | |
| ACGGAAAAATGACTACTGAA+TGG | - | chr2.1:43627871-43627890 | None:intergenic | 35.0% | |
| AGCATATGTATTCTGTGTCA+AGG | + | chr2.1:43626424-43626443 | MS.gene75909:CDS | 35.0% | |
| AGGCCTTTAGTAGATATACA+AGG | + | chr2.1:43628892-43628911 | MS.gene75909:intron | 35.0% | |
| ATCATTAACTAATTGGCCAG+GGG | - | chr2.1:43628810-43628829 | None:intergenic | 35.0% | |
| CATTCAAACTAACAGATTGG+TGG | + | chr2.1:43628413-43628432 | MS.gene75909:intron | 35.0% | |
| CCACATTCAAACTAACAGAT+TGG | + | chr2.1:43628410-43628429 | MS.gene75909:intron | 35.0% | |
| CCCAAGCTATAGAATATAGA+TGG | - | chr2.1:43627713-43627732 | None:intergenic | 35.0% | |
| CGGAAGTTAAGAACATGATT+TGG | + | chr2.1:43627989-43628008 | MS.gene75909:intron | 35.0% | |
| CTATCATTAACTAATTGGCC+AGG | - | chr2.1:43628812-43628831 | None:intergenic | 35.0% | |
| CTGTAAAAAAAGCCATTGAG+GGG | + | chr2.1:43626578-43626597 | MS.gene75909:CDS | 35.0% | |
| CTTAAAACACCCTCTCATAT+TGG | - | chr2.1:43627208-43627227 | None:intergenic | 35.0% | |
| GAAAAGAGTTCCTACCAATA+TGG | - | chr2.1:43627088-43627107 | None:intergenic | 35.0% | |
| GCAATACATCATCTCTGTTT+GGG | - | chr2.1:43628150-43628169 | None:intergenic | 35.0% | |
| GCATATGTATTCTGTGTCAA+GGG | + | chr2.1:43626425-43626444 | MS.gene75909:CDS | 35.0% | |
| GCCATCTATATTCTATAGCT+TGG | + | chr2.1:43627709-43627728 | MS.gene75909:intron | 35.0% | |
| GCTGTAAAAAAAGCCATTGA+GGG | + | chr2.1:43626577-43626596 | MS.gene75909:CDS | 35.0% | |
| GTTAGCAAATACAGTAGGTT+AGG | + | chr2.1:43628686-43628705 | MS.gene75909:intron | 35.0% | |
| TAACAGATTGGTGGAAGATT+GGG | + | chr2.1:43628422-43628441 | MS.gene75909:intron | 35.0% | |
| TATACTGCATTAGCAAGTCT+GGG | - | chr2.1:43626890-43626909 | None:intergenic | 35.0% | |
| TCATTTCTTTGCGGTGAATA+TGG | - | chr2.1:43626721-43626740 | None:intergenic | 35.0% | |
| TCCCTTTATGGAATCCATAT+TGG | + | chr2.1:43627071-43627090 | MS.gene75909:intron | 35.0% | |
| TGAATGTGGGAATTCAATCA+GGG | - | chr2.1:43628399-43628418 | None:intergenic | 35.0% | |
| TGCAATACATCATCTCTGTT+TGG | - | chr2.1:43628151-43628170 | None:intergenic | 35.0% | |
| TGCTGTAAAAAAAGCCATTG+AGG | + | chr2.1:43626576-43626595 | MS.gene75909:CDS | 35.0% | |
| TGGTCAACTGACATATATTC+GGG | + | chr2.1:43628614-43628633 | MS.gene75909:intron | 35.0% | |
| TGTCAAACTAATAAACGTGG+AGG | - | chr2.1:43628567-43628586 | None:intergenic | 35.0% | |
| TGTTAGGATCCAATATGAGA+GGG | + | chr2.1:43627196-43627215 | MS.gene75909:intron | 35.0% | |
| TTGAATGTGGGAATTCAATC+AGG | - | chr2.1:43628400-43628419 | None:intergenic | 35.0% | |
| TTGTTAGGATCCAATATGAG+AGG | + | chr2.1:43627195-43627214 | MS.gene75909:intron | 35.0% | |
| ! | AAAATCCACGTTTTTCTGTC+AGG | - | chr2.1:43628756-43628775 | None:intergenic | 35.0% |
| ! | AAATCCTAGAGCCTCTAAAA+CGG | - | chr2.1:43627890-43627909 | None:intergenic | 35.0% |
| ! | AACCTACTGTATTTGCTAAC+TGG | - | chr2.1:43628686-43628705 | None:intergenic | 35.0% |
| ! | ATTCTTTCGTTGTGTCATTG+TGG | + | chr2.1:43627513-43627532 | MS.gene75909:intron | 35.0% |
| ! | CCAATCTGTTAGTTTGAATG+TGG | - | chr2.1:43628413-43628432 | None:intergenic | 35.0% |
| ! | TTAGTTGTCCTGTTTTCCAA+TGG | + | chr2.1:43626469-43626488 | MS.gene75909:intron | 35.0% |
| ! | TTCAACGTTAGTTTAGGTGA+TGG | - | chr2.1:43627798-43627817 | None:intergenic | 35.0% |
| ACAGTTCAAACTTAGAGGAG+AGG | - | chr2.1:43626998-43627017 | None:intergenic | 40.0% | |
| AGAAATTGCAGAGATTGCAG+AGG | - | chr2.1:43628271-43628290 | None:intergenic | 40.0% | |
| ATACATTGACAGCATCAACG+AGG | + | chr2.1:43628291-43628310 | MS.gene75909:CDS | 40.0% | |
| CCATGCAACGGAAAAACAAT+CGG | - | chr2.1:43628722-43628741 | None:intergenic | 40.0% | |
| CCTATGGCATCATTTCTTTG+CGG | - | chr2.1:43626730-43626749 | None:intergenic | 40.0% | |
| CTAACAGATTGGTGGAAGAT+TGG | + | chr2.1:43628421-43628440 | MS.gene75909:intron | 40.0% | |
| CTATACTGCATTAGCAAGTC+TGG | - | chr2.1:43626891-43626910 | None:intergenic | 40.0% | |
| GAGGACTTCATTGCAGTTAT+AGG | + | chr2.1:43628310-43628329 | MS.gene75909:CDS | 40.0% | |
| GCTTGGGTGTCTAATATATC+TGG | + | chr2.1:43627726-43627745 | MS.gene75909:intron | 40.0% | |
| GTCTCTTCTTATCCATGCAA+CGG | - | chr2.1:43628734-43628753 | None:intergenic | 40.0% | |
| TCATTAACTAATTGGCCAGG+GGG | - | chr2.1:43628809-43628828 | None:intergenic | 40.0% | |
| TGATACTGCTCACAGAAGAT+GGG | + | chr2.1:43628201-43628220 | MS.gene75909:CDS | 40.0% | |
| TTATTAGTGAGTGGCCCATT+AGG | + | chr2.1:43627261-43627280 | MS.gene75909:intron | 40.0% | |
| TTTGTGATTGCAGGCACATT+TGG | + | chr2.1:43626543-43626562 | MS.gene75909:intron | 40.0% | |
| ! | CACACAAAGGTACACACAAA+AGG | + | chr2.1:43627169-43627188 | MS.gene75909:intron | 40.0% |
| ! | GGGATTTTGAGCAACTATGA+TGG | + | chr2.1:43626598-43626617 | MS.gene75909:CDS | 40.0% |
| ! | TCTGATAAAGTGCCAACCAT+TGG | - | chr2.1:43626488-43626507 | None:intergenic | 40.0% |
| ! | TTGTCCTGTTTTCCAATGGT+TGG | + | chr2.1:43626473-43626492 | MS.gene75909:intron | 40.0% |
| !!! | ATTGGCTTTTGACAGTGTTG+TGG | - | chr2.1:43627116-43627135 | None:intergenic | 40.0% |
| !!! | TTTTCCGTTTTAGAGGCTCT+AGG | + | chr2.1:43627883-43627902 | MS.gene75909:intron | 40.0% |
| AAGATGGGCAAAGCTTCTGA+GGG | + | chr2.1:43628216-43628235 | MS.gene75909:CDS | 45.0% | |
| ACCATGAACCTCGCTTTCTT+CGG | - | chr2.1:43626686-43626705 | None:intergenic | 45.0% | |
| AGAAACATCCGAAGAAAGCG+AGG | + | chr2.1:43626675-43626694 | MS.gene75909:CDS | 45.0% | |
| AGAGACCTGACAGAAAAACG+TGG | + | chr2.1:43628748-43628767 | MS.gene75909:intron | 45.0% | |
| AGTGCCAACCATTGGAAAAC+AGG | - | chr2.1:43626480-43626499 | None:intergenic | 45.0% | |
| ATTCGGGCAAGAGTTTGATC+TGG | + | chr2.1:43628630-43628649 | MS.gene75909:intron | 45.0% | |
| CATTAACTAATTGGCCAGGG+GGG | - | chr2.1:43628808-43628827 | None:intergenic | 45.0% | |
| CCGCAAAGAAATGATGCCAT+AGG | + | chr2.1:43626727-43626746 | MS.gene75909:CDS | 45.0% | |
| GGCCAGTTAGCAAATACAGT+AGG | + | chr2.1:43628681-43628700 | MS.gene75909:intron | 45.0% | |
| GTGATACTGCTCACAGAAGA+TGG | + | chr2.1:43628200-43628219 | MS.gene75909:CDS | 45.0% | |
| GTTGCTCAAAATCCCCTCAA+TGG | - | chr2.1:43626593-43626612 | None:intergenic | 45.0% | |
| TCCCTGAAAAGAGAGACCTA+TGG | - | chr2.1:43626746-43626765 | None:intergenic | 45.0% | |
| TTCGATGGCACAAGTCAAAG+AGG | - | chr2.1:43627396-43627415 | None:intergenic | 45.0% | |
| ! | AGATTGGGATACAGCATCGA+TGG | + | chr2.1:43628437-43628456 | MS.gene75909:CDS | 45.0% |
| ! | AGATTTCTGATTTTCCCCCC+TGG | + | chr2.1:43628791-43628810 | MS.gene75909:intron | 45.0% |
| ! | AGGGGAATTAGGAGTTCTAG+AGG | + | chr2.1:43627345-43627364 | MS.gene75909:intron | 45.0% |
| ! | ATAGGTGAAGGCACACACAA+AGG | + | chr2.1:43627156-43627175 | MS.gene75909:intron | 45.0% |
| ! | GCCATAGGTCTCTCTTTTCA+GGG | + | chr2.1:43626742-43626761 | MS.gene75909:CDS | 45.0% |
| ! | TGCCATAGGTCTCTCTTTTC+AGG | + | chr2.1:43626741-43626760 | MS.gene75909:CDS | 45.0% |
| !! | CCGATTGTTTTTCCGTTGCA+TGG | + | chr2.1:43628719-43628738 | MS.gene75909:intron | 45.0% |
| !! | CTTCTAGAGCAAAGCTTCGA+TGG | - | chr2.1:43627411-43627430 | None:intergenic | 45.0% |
| !! | GATTGGGATACAGCATCGAT+GGG | + | chr2.1:43628438-43628457 | MS.gene75909:CDS | 45.0% |
| !! | GGAATTAGGAGTTCTAGAGG+AGG | + | chr2.1:43627348-43627367 | MS.gene75909:intron | 45.0% |
| GAAGATGGGCAAAGCTTCTG+AGG | + | chr2.1:43628215-43628234 | MS.gene75909:CDS | 50.0% | |
| GACAGTGCAGTCATACACCA+AGG | + | chr2.1:43628460-43628479 | MS.gene75909:CDS | 50.0% | |
| GTTGCTGCAGCAATTGCTTG+TGG | + | chr2.1:43626640-43626659 | MS.gene75909:CDS | 50.0% | |
| TCCGAAGAAAGCGAGGTTCA+TGG | + | chr2.1:43626682-43626701 | MS.gene75909:CDS | 50.0% | |
| ! | GATTGCAGGCACATTTGGTG+CGG | + | chr2.1:43626548-43626567 | MS.gene75909:intron | 50.0% |
| !! | ATTGCAGGCACATTTGGTGC+GGG | + | chr2.1:43626549-43626568 | MS.gene75909:intron | 50.0% |
| ! | GCAAAGCTTCTGAGGGATCG+TGG | + | chr2.1:43628223-43628242 | MS.gene75909:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 43626399 | 43628917 | 43626399 | ID=MS.gene75909 |
| chr2.1 | mRNA | 43626399 | 43628917 | 43626399 | ID=MS.gene75909.t1;Parent=MS.gene75909 |
| chr2.1 | exon | 43626399 | 43626446 | 43626399 | ID=MS.gene75909.t1.exon1;Parent=MS.gene75909.t1 |
| chr2.1 | CDS | 43626399 | 43626446 | 43626399 | ID=cds.MS.gene75909.t1;Parent=MS.gene75909.t1 |
| chr2.1 | exon | 43626556 | 43626812 | 43626556 | ID=MS.gene75909.t1.exon2;Parent=MS.gene75909.t1 |
| chr2.1 | CDS | 43626556 | 43626812 | 43626556 | ID=cds.MS.gene75909.t1;Parent=MS.gene75909.t1 |
| chr2.1 | exon | 43628156 | 43628336 | 43628156 | ID=MS.gene75909.t1.exon3;Parent=MS.gene75909.t1 |
| chr2.1 | CDS | 43628156 | 43628336 | 43628156 | ID=cds.MS.gene75909.t1;Parent=MS.gene75909.t1 |
| chr2.1 | exon | 43628428 | 43628481 | 43628428 | ID=MS.gene75909.t1.exon4;Parent=MS.gene75909.t1 |
| chr2.1 | CDS | 43628428 | 43628481 | 43628428 | ID=cds.MS.gene75909.t1;Parent=MS.gene75909.t1 |
| chr2.1 | exon | 43628894 | 43628917 | 43628894 | ID=MS.gene75909.t1.exon5;Parent=MS.gene75909.t1 |
| chr2.1 | CDS | 43628894 | 43628917 | 43628894 | ID=cds.MS.gene75909.t1;Parent=MS.gene75909.t1 |
| Gene Sequence |
| Protein sequence |
