AlfalfaGEDB | MS.gene79201

M. sativa cultivar XinJiangDaYe / MS.gene79201

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79201.t1	XP_003601922.1	94.2	154	9	0	1	154	1	154	1.10E-76	295.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79201.t1	G7J380	94.2	154	9	0	1	154	1	154	8.3e-77	295.8

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049181	MS.gene79201	0.830888	2.28E-55	-1.69E-46
MS.gene049259	MS.gene79201	0.813293	2.75E-51	-1.69E-46
MS.gene049281	MS.gene79201	0.848877	4.63E-60	-1.69E-46
MS.gene05015	MS.gene79201	0.802534	5.36E-49	-1.69E-46
MS.gene050363	MS.gene79201	0.826091	3.28E-54	-1.69E-46
MS.gene050381	MS.gene79201	0.850236	1.93E-60	-1.69E-46
MS.gene050612	MS.gene79201	-0.80256	5.29E-49	-1.69E-46
MS.gene050883	MS.gene79201	0.893446	6.24E-75	-1.69E-46
MS.gene051044	MS.gene79201	0.825729	4.00E-54	-1.69E-46
MS.gene051127	MS.gene79201	0.84873	5.09E-60	-1.69E-46
MS.gene051364	MS.gene79201	0.800482	1.41E-48	-1.69E-46
MS.gene051946	MS.gene79201	0.829773	4.27E-55	-1.69E-46
MS.gene052053	MS.gene79201	0.809818	1.57E-50	-1.69E-46
MS.gene052089	MS.gene79201	0.853226	2.75E-61	-1.69E-46
MS.gene052091	MS.gene79201	0.814937	1.19E-51	-1.69E-46
MS.gene052482	MS.gene79201	-0.807	6.26E-50	-1.69E-46
MS.gene052486	MS.gene79201	-0.810528	1.10E-50	-1.69E-46
MS.gene053420	MS.gene79201	0.81446	1.52E-51	-1.69E-46
MS.gene053549	MS.gene79201	0.813641	2.31E-51	-1.69E-46
MS.gene053561	MS.gene79201	0.812051	5.15E-51	-1.69E-46
MS.gene053826	MS.gene79201	0.843015	1.82E-58	-1.69E-46
MS.gene054056	MS.gene79201	0.840875	6.68E-58	-1.69E-46
MS.gene054959	MS.gene79201	0.803948	2.73E-49	-1.69E-46
MS.gene055124	MS.gene79201	0.801845	7.43E-49	-1.69E-46
MS.gene055154	MS.gene79201	0.83209	1.15E-55	-1.69E-46
MS.gene055549	MS.gene79201	0.871752	5.38E-67	-1.69E-46
MS.gene055550	MS.gene79201	0.866354	3.03E-65	-1.69E-46
MS.gene055551	MS.gene79201	0.842529	2.45E-58	-1.69E-46
MS.gene05589	MS.gene79201	-0.806198	9.24E-50	-1.69E-46
MS.gene055942	MS.gene79201	0.831565	1.55E-55	-1.69E-46
MS.gene056310	MS.gene79201	0.826988	2.00E-54	-1.69E-46
MS.gene056311	MS.gene79201	0.868244	7.54E-66	-1.69E-46
MS.gene056365	MS.gene79201	0.807683	4.48E-50	-1.69E-46
MS.gene056504	MS.gene79201	-0.819026	1.44E-52	-1.69E-46
MS.gene056530	MS.gene79201	0.804771	1.84E-49	-1.69E-46
MS.gene056761	MS.gene79201	0.823425	1.39E-53	-1.69E-46
MS.gene057014	MS.gene79201	0.824244	8.97E-54	-1.69E-46
MS.gene058068	MS.gene79201	0.824161	9.37E-54	-1.69E-46
MS.gene058099	MS.gene79201	0.823685	1.21E-53	-1.69E-46
MS.gene058109	MS.gene79201	0.818043	2.41E-52	-1.69E-46
MS.gene058111	MS.gene79201	0.852729	3.81E-61	-1.69E-46
MS.gene058171	MS.gene79201	0.816552	5.22E-52	-1.69E-46
MS.gene058173	MS.gene79201	0.80982	1.57E-50	-1.69E-46
MS.gene058175	MS.gene79201	0.816482	5.41E-52	-1.69E-46
MS.gene058268	MS.gene79201	0.819918	9.03E-53	-1.69E-46
MS.gene058269	MS.gene79201	0.817168	3.79E-52	-1.69E-46
MS.gene058493	MS.gene79201	0.86833	7.07E-66	-1.69E-46
MS.gene058494	MS.gene79201	0.83195	1.25E-55	-1.69E-46
MS.gene058628	MS.gene79201	0.861061	1.34E-63	-1.69E-46
MS.gene058629	MS.gene79201	0.857518	1.55E-62	-1.69E-46
MS.gene058630	MS.gene79201	0.865619	5.18E-65	-1.69E-46
MS.gene059022	MS.gene79201	-0.802121	6.52E-49	-1.69E-46
MS.gene059045	MS.gene79201	0.816849	4.47E-52	-1.69E-46
MS.gene059690	MS.gene79201	0.833863	4.18E-56	-1.69E-46
MS.gene059694	MS.gene79201	0.836647	8.28E-57	-1.69E-46
MS.gene059697	MS.gene79201	0.830754	2.46E-55	-1.69E-46
MS.gene059865	MS.gene79201	-0.823651	1.24E-53	-1.69E-46
MS.gene060595	MS.gene79201	0.828815	7.29E-55	-1.69E-46
MS.gene060778	MS.gene79201	-0.801887	7.28E-49	-1.69E-46
MS.gene06077	MS.gene79201	-0.818471	1.93E-52	-1.69E-46
MS.gene060982	MS.gene79201	-0.808452	3.08E-50	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79201.t1	MTR_3g086830	94.156	154	9	0	1	154	1	154	1.32e-81	238
MS.gene79201.t1	MTR_8g089920	43.137	153	75	4	4	154	1	143	6.05e-33	114

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 0 sgRNAs with CRISPR-Local

Find 38 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	AATAGTAGAGAGAATCAATA+GGG	+	24130:8388-8407	None:intergenic	25.0%
	AATTAGAAGCAACAAGAGTA+AGG	-	24130:8276-8295	MS.gene79201:CDS	30.0%
	CAATAGTAGAGAGAATCAAT+AGG	+	24130:8389-8408	None:intergenic	30.0%
	CCAAATGATAAACAATTACC+AGG	-	24130:8311-8330	MS.gene79201:CDS	30.0%
	CCTGGTAATTGTTTATCATT+TGG	+	24130:8314-8333	None:intergenic	30.0%
	AGGAATCTGTAGTGAATTCT+AGG	-	24130:8690-8709	MS.gene79201:CDS	35.0%
	AGGTACTCAAATTGAGGAAA+AGG	-	24130:8660-8679	MS.gene79201:CDS	35.0%
	ATGATGCCTCAACAAATCAT+GGG	-	24130:8444-8463	MS.gene79201:CDS	35.0%
	GAGTTTGTCTCTTAAACAAG+AGG	+	24130:8345-8364	None:intergenic	35.0%
	GGTACTCAAATTGAGGAAAA+GGG	-	24130:8661-8680	MS.gene79201:CDS	35.0%
	TTTCCTCAATTTGAGTACCT+TGG	+	24130:8660-8679	None:intergenic	35.0%
!	GAAGAAAGAAAGATGGCTTT+TGG	-	24130:8633-8652	MS.gene79201:CDS	35.0%
!	TTTGTTGAGGCATCATCAAT+AGG	+	24130:8440-8459	None:intergenic	35.0%
	AAACAAGAGGAACAAACACC+TGG	+	24130:8332-8351	None:intergenic	40.0%
	ATTGAGGAAAAGGGATACAG+AGG	-	24130:8670-8689	MS.gene79201:CDS	40.0%
	GAGAGAATCAATAGGGTTCT+TGG	+	24130:8381-8400	None:intergenic	40.0%
	GATGATGCCTCAACAAATCA+TGG	-	24130:8443-8462	MS.gene79201:CDS	40.0%
	GGTAGAGGAAGAAAGAAAGA+TGG	-	24130:8626-8645	MS.gene79201:CDS	40.0%
	TGTCATACAAGAAGCAGAAC+CGG	+	24130:8519-8538	None:intergenic	40.0%
!!	TGAAGACCCATGATTTGTTG+AGG	+	24130:8453-8472	None:intergenic	40.0%
	ATCGTAGTAGACACTTTCGC+AGG	-	24130:8477-8496	MS.gene79201:CDS	45.0%
!	GAAAGATGGCTTTTGGTCCA+AGG	-	24130:8640-8659	MS.gene79201:CDS	45.0%
!	GAGGCATCATCAATAGGTTG+AGG	+	24130:8434-8453	None:intergenic	45.0%
!	GGTCCAAGGTACTCAAATTG+AGG	-	24130:8654-8673	MS.gene79201:CDS	45.0%
!	TCAATAGGTTGAGGAGAAGC+AGG	+	24130:8425-8444	None:intergenic	45.0%
	AGGAATGCTTCACAAGCGAC+CGG	-	24130:8497-8516	MS.gene79201:CDS	50.0%
	TGAGGAGAAGCAGGAGAAGA+AGG	+	24130:8416-8435	None:intergenic	50.0%
	TGTTTCGAGGAACCGAGTCA+GGG	-	24130:8586-8605	MS.gene79201:CDS	50.0%
	TTGTTTCGAGGAACCGAGTC+AGG	-	24130:8585-8604	MS.gene79201:CDS	50.0%
!	GACTCGGTTCCTCGAAACAA+CGG	+	24130:8585-8604	None:intergenic	50.0%
	CAACATCCCTCTCCCTGACT+CGG	+	24130:8601-8620	None:intergenic	55.0%
!	AGGGATGTTGGTGGAGGTAG+AGG	-	24130:8611-8630	MS.gene79201:CDS	55.0%
!	AGTCGCTTGCCGTTGTTTCG+AGG	-	24130:8573-8592	MS.gene79201:CDS	55.0%
	CGAGTCAGGGAGAGGGATGT+TGG	-	24130:8599-8618	MS.gene79201:CDS	60.0%
	GAGGAACCGAGTCAGGGAGA+GGG	-	24130:8592-8611	MS.gene79201:CDS	60.0%
	GTCAGGGAGAGGGATGTTGG+TGG	-	24130:8602-8621	MS.gene79201:CDS	60.0%
!	AGGGAGAGGGATGTTGGTGG+AGG	-	24130:8605-8624	MS.gene79201:CDS	60.0%
	CGAGGAACCGAGTCAGGGAG+AGG	-	24130:8591-8610	MS.gene79201:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
24130	gene	8254	8718	8254	ID=MS.gene79201
24130	mRNA	8254	8718	8254	ID=MS.gene79201.t1;Parent=MS.gene79201
24130	exon	8254	8718	8254	ID=MS.gene79201.t1.exon1;Parent=MS.gene79201.t1
24130	CDS	8254	8718	8254	ID=cds.MS.gene79201.t1;Parent=MS.gene79201.t1

Gene Sequence

>MS.gene79201

ATGAATCAGATGAAGTGGTGCGAATTAGAAGCAACAAGAGTAAGGTGCAAAGAACATCCAAATGATAAACAATTACCAGGTGTTTGTTCCTCTTGTTTAAGAGACAAACTCTCAAATCTATACACCAAGAACCCTATTGATTCTCTCTACTATTGTTCTCCTTCTTCTCCTGCTTCTCCTCAACCTATTGATGATGCCTCAACAAATCATGGGTCTTCAGCTCATCGTAGTAGACACTTTCGCAGGAATGCTTCACAAGCGACCGGTTCTGCTTCTTGTATGACAAGCTTTAATCATGCGTTGAACTTGAAGAAGAGCAAGTCGCTTGCCGTTGTTTCGAGGAACCGAGTCAGGGAGAGGGATGTTGGTGGAGGTAGAGGAAGAAAGAAAGATGGCTTTTGGTCCAAGGTACTCAAATTGAGGAAAAGGGATACAGAGGAATCTGTAGTGAATTCTAGGACTTGA

Protein sequence

>MS.gene79201.t1

MNQMKWCELEATRVRCKEHPNDKQLPGVCSSCLRDKLSNLYTKNPIDSLYYCSPSSPASPQPIDDASTNHGSSAHRSRHFRRNASQATGSASCMTSFNHALNLKKSKSLAVVSRNRVRERDVGGGRGRKKDGFWSKVLKLRKRDTEESVVNSRT