AlfalfaGEDB | MS.gene79253

M. sativa cultivar XinJiangDaYe / MS.gene79253

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF13176.9 PF13181.9 PF13374.9 PF13424.9 PF14559.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79253.t1	XP_013468521.1	96	547	22	0	2	548	48	594	4.10E-276	960.3

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79253.t1	Q9LII8	30.1	482	320	8	63	532	163	639	3.1e-46	188.0

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79253.t1	A0A072VMA4	96.0	547	22	0	2	548	48	594	3.0e-276	960.3

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049207	MS.gene79253	0.832959	7.02E-56	-1.69E-46
MS.gene049254	MS.gene79253	0.809984	1.44E-50	-1.69E-46
MS.gene049343	MS.gene79253	0.836016	1.20E-56	-1.69E-46
MS.gene049666	MS.gene79253	0.81896	1.49E-52	-1.69E-46
MS.gene049824	MS.gene79253	0.834058	3.73E-56	-1.69E-46
MS.gene049825	MS.gene79253	0.85297	3.25E-61	-1.69E-46
MS.gene049873	MS.gene79253	0.844071	9.49E-59	-1.69E-46
MS.gene050026	MS.gene79253	0.801792	7.62E-49	-1.69E-46
MS.gene050303	MS.gene79253	0.820614	6.25E-53	-1.69E-46
MS.gene050559	MS.gene79253	0.803631	3.18E-49	-1.69E-46

Showing 1 to 10 of 59 entries

Previous1 2 3 4 5 6Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79253.t1	MTR_1g070145	96.986	564	17	0	1	564	47	610	0.0	1120
MS.gene79253.t1	MTR_8g099745	28.514	498	331	6	45	528	65	551	1.84e-47	175
MS.gene79253.t1	MTR_8g027385	27.621	496	338	8	45	529	52	537	1.02e-41	159
MS.gene79253.t1	MTR_3g077950	26.130	509	360	6	37	536	245	746	6.17e-41	159
MS.gene79253.t1	MTR_3g077950	26.130	509	360	6	37	536	273	774	6.86e-41	159
MS.gene79253.t1	MTR_6g007110	27.475	495	326	7	52	528	190	669	7.45e-39	152
MS.gene79253.t1	MTR_4g106900	24.847	491	357	5	45	528	167	652	1.57e-38	151
MS.gene79253.t1	MTR_6g007110	27.533	454	296	7	52	487	190	628	2.47e-35	141

Showing 1 to 8 of 8 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79253.t1	AT2G31240	68.190	547	168	4	1	544	68	611	0.0	766
MS.gene79253.t1	AT3G27960	29.981	527	347	11	45	557	143	661	5.22e-52	189
MS.gene79253.t1	AT3G27960	29.981	527	347	11	45	557	143	661	5.22e-52	189
MS.gene79253.t1	AT3G27960	29.825	456	302	8	45	487	143	593	2.50e-47	175
MS.gene79253.t1	AT4G10840	28.797	507	326	9	47	529	78	573	1.30e-45	171
MS.gene79253.t1	AT4G10840	28.448	464	298	8	47	487	78	530	1.24e-41	158
MS.gene79253.t1	AT1G27500	26.793	474	334	5	68	533	161	629	2.57e-41	159
MS.gene79253.t1	AT1G27500	26.653	484	322	7	68	533	172	640	3.12e-41	159

Showing 1 to 8 of 8 entries

Previous1Next

Find 146 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTTGCAGACTGTAAA+AGG	0.282943	1.4:-57235063	MS.gene79253:CDS
AACATCTGCGCTGCTGACTG+AGG	0.547767	1.4:+57234683	None:intergenic
AACTGCAAACTCATAGCATA+AGG	0.469559	1.4:+57235742	None:intergenic
AAGAGAACAGATTACACCGG+TGG	0.642489	1.4:-57235008	MS.gene79253:CDS
AAGAGGCGCTAGAGAATCTT+CGG	0.442376	1.4:-57235540	MS.gene79253:CDS
AATAGGTTTAGTGATAGTTT+AGG	0.302645	1.4:-57235694	MS.gene79253:CDS
AATTGCACAGCATGAAGCAC+AGG	0.576090	1.4:+57235601	None:intergenic
ACGTGGCGGTGTGTCAGGTT+GGG	0.514066	1.4:+57232861	None:intergenic
ACTGTTCGGGATTGACGTGG+CGG	0.661175	1.4:+57232847	None:intergenic
AGAAACCTCCATGATATCCT+TGG	0.489502	1.4:+57234652	None:intergenic

Showing 1 to 10 of 146 entries

Previous1 2 3 4 5…15Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTTTGCAGACTGTAAA+AGG	-	chr1.4:57233801-57233820	MS.gene79253:intron	30.0%
AAGCACATTATCCAAAAACA+AGG	+	chr1.4:57235625-57235644	None:intergenic	30.0%
AATATGAATCCCACACTATT+AGG	+	chr1.4:57234424-57234443	None:intergenic	30.0%
AGCACATTATCCAAAAACAA+GGG	+	chr1.4:57235624-57235643	None:intergenic	30.0%
AGGTGTTTAGAGATTTCTAT+TGG	-	chr1.4:57233821-57233840	MS.gene79253:intron	30.0%
ATAACCAACTCCAAAATGTT+TGG	+	chr1.4:57234119-57234138	None:intergenic	30.0%
ATCTTGAGTACAAAGAGTTA+TGG	-	chr1.4:57235249-57235268	MS.gene79253:CDS	30.0%
CTATTATGGGATTGATGTAA+CGG	+	chr1.4:57235960-57235979	None:intergenic	30.0%
GCTGCATGTGTATTATTATT+AGG	+	chr1.4:57235912-57235931	None:intergenic	30.0%
GGTATCTTAATAAGGCTAAT+AGG	-	chr1.4:57233192-57233211	MS.gene79253:intron	30.0%

Showing 1 to 10 of 228 entries

Previous1 2 3 4 5…23Next

Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	57232843	57236043	57232843	ID=MS.gene79253
chr1.4	mRNA	57232843	57236043	57232843	ID=MS.gene79253.t1;Parent=MS.gene79253
chr1.4	exon	57234581	57236043	57234581	ID=MS.gene79253.t1.exon1;Parent=MS.gene79253.t1
chr1.4	CDS	57234581	57236043	57234581	ID=cds.MS.gene79253.t1;Parent=MS.gene79253.t1
chr1.4	exon	57232843	57233143	57232843	ID=MS.gene79253.t1.exon2;Parent=MS.gene79253.t1
chr1.4	CDS	57232843	57233143	57232843	ID=cds.MS.gene79253.t1;Parent=MS.gene79253.t1

Gene Sequence

>MS.gene79253

ATGTCAACCCTCATCCAAAAACCCACTCAAATCTCTCCTAGACAACGCAAAATCATCGAAAAATCGCATCTTGAAGAAGCTTTTGAGTCCGCCAAAACAACCGAAGAAATGCTCAAAGCATTCAGTGAGATGGAAATTTCATTCAATGAAAAGGAGCTTGGTTTAGCTGCATTGAAAATTGGTCTGAAGCTTGATCGCGAAGGTGGGGATCATGAAAAAGCTCTTGAATTTGCTAATAGAGCTTTGAAAGTGTTTGAAAATGAAAAGAAAGATTCTTTTCCTTATGCTATGAGTTTGCAGTTAATGGGTAGTCTTAATTATGGTTTAAATAGGTTTAGTGATAGTTTAGGGTATCTTAATAAGGCTAATAGGGTTTTGGGTAGGTTAGAGAATGAGGGTGTTTGTGTTGATGATGTTAGGCCTGTGCTTCATGCTGTGCAATTTGAGTTGGCTAATGTTAAGACGGCGATGGGGAGGAGAGAAGAGGCGCTAGAGAATCTTCGGAAGTGTTTGGAGATTAAGGAGATGACTTTTGAGGAAGATAGTGAGGAGTTAGGGAAAGGGAATAGGGATTTAGCGGAAGCTTATGTTGCGGTTTTGAATTTTAAGGAGGCGCTTCCATATTGTTTAAAGGCGTTAGAGATACATACGAAGCGATTAGGGATGAATTCTGTTGAGGTTGCGCATGATAGGAAGCTTCTTGGGATTGTTTATAGTGGGATGGAGGATCATGAGAAGGCGTTGGAGCAGAATGTTTTGGCGCAGAAGATTTTGAAGAATTGGAATCTCAGTTCGGATTTGTTGCGCGCTGAAGTTGATGCTGCGAATATGATGATTGCTTTGGGGAGATACGATGAAGCTGTTGGTACTTTGAAGAACGTTGTGAATCAGACTGAGAAAGATAGTGAGACTCGAGCTCTTGTGCTTGTATCAATGGGGAAAGCGTTATGTAATCAGGAAAAGTTTGCAGACTGTAAAAGGTGTTTAGAGATTTCTATTGGGATTCTTGATAAAAGAGAACAGATTACACCGGTGGAAGTTTCTGAGGCATACTCGGAGATATCCATGCTATATGAAACTATGAACGAGTTCGAAACTGCGATTTCGTTGCTGAAGAGGGCACTAGCTTTGCTCGAGAAGCTCCCACAAGAGCAGCACTCGGAGGGAAGTGTATCTGCAAGAATAGGGTGGTTGTTGTTGCTTACAGGTAAGGTGAAGCAGGCTATTCCTTATTTGGAAAGTGCTGCTGAAAGGTTGAAAGAGAGCTTTGGTCCCAAACATTTTGGAGTTGGTTATATCTACAACAATTTGGGGGCAGCATATTTAGAGTTGGATAGGCCTCAGTCAGCAGCGCAGATGTTTGCGGTAGCCAAGGATATCATGGAGGTTTCTCTTGGTCCACATCATGCAGATACAATTGAAGCATGTCAGAATCTTTCAAAGGCATATGGTGATATTGGAAGGTATGGATTGTTTTATTGCTTCGACTTTATTCCCTGATATTGTTTCTCTTGAAAACAATTGGTTTTTGGGTACACTTTACTCTAGCAGTTTAAACATTTAACTTTTGGACATACACCTAATAGTGTGGGATTCATATTCCATTGGATCAATTATTTTGAAACTTAAGGATGGCTGAATTCTCTTGCATTCAAGTGTAACGATTTCTGACATAAAATAGAGTGCAGGGTATGATTAATATGTCTGCTTCTATTTCTTCATTGTGTTGATTGACTGATTTCAAAATAAAAATTAGGCTGTGTTTGGATCAACAACTTAATTAAGCGCTTATCATATAAGTACTTTATGTGTAAGCTTTGTCCATAACAAAAGATAAAATAAAGTTAAACTATTTTCATATAAGTAGCTATGTTGGAGAACTTATTGAAATAAGCTGAAAACATTTTATGAACATGTCATAAGCTGTTTATGTAAGCTCTCCAAACACTGTTGCTAGTTCTTATGCTAGTAGATAACCTCAAATAAGCCATTCCAAACAGGTCCTTATTCATGCTATGCTCATAATCCTTTTAGTTTCCATGTCTACCTCTCATATAGTTCTTTCCATCTATCAAACTACACCCTCCGGTCACTATTATAAGCAAAAAACTACATTTTAGATTCATTCATTAAATGATGTATGTGGTTCATAATAAAGACCACATACATCATTTAATGAATGAATCTAAAATGTAGTTTTTTGCTTATAATAGTGACCGGAGGGTGTAAGTTTTATTGCTTTCTAAGAGTGAGTTAATTGTTTAACCACTATATTCTCTTCTGTGCTCACCAAGAGAGTTCTGATTTGGTGTTTTGTGTTGTACACTGTAAATTTCTAGTCTTCACATATTAGATAAAATAAAGTGTATCTGAGTAGAATTTGAATGATGAAATTCTCGAGAGTAGATCTTGAGTACAAAGAGTTATGGCCTGAGCCCATAATTGCACATGGAATTGCTGCTAATGTAGTCACTAGTCAGACATCAATGTTTTGCTTGTTTTTGGAACTTTATGCAAACTTATTTCATTATTTAGATCGGTCCATTTCGAGCTCAATTGCATATGATTATTTTGTTTGCAGTCTACACAAATTTTATTTATGAAGTTTATGCACACATGATTTTTTTTCCTATATAGTATGTACTTGAATTACAAAAATATTTAGGAATCGGAAGGTATAATTTAGACTTGGTTGTTCCCGGTTCAGAGGTTCTCGTAAAGGAATTTAATGAATTCAACGTAACATACTGTGAGTGGAATGTGCAAACTTGTTTCTGTCCCTTGTTTTTGGATAATGTGCTTCTATTTTCACTAGTTTAATTTAATTGTCATTGCATTGTGAACTGTATATGTTTTTCCAACGGAAAAATTCATGTTTTCCTAAAATATTGGAATTGCAGCCATTCCCTTGCAATTGAGTTTCAGCAGCAAGTTATAGATGCTTGGGAAAGCCATGGAGCAAGTGCAGAAGAAGAACTAAGAGAAGCTCAGCGACTACTCGAACAATTAAAGAAAAAAGCCCGCGGTGTCTCTGCAAATGAGGTTCCTATGAAGGCTCTTCCCTTTCCTAATAATAATACACATGCAGCATCCAATAACTCCCAACCTGACATACCGTTACATCAATCCCATAATAGTACACCTGCAGCATCCAGTAACTCCCAACCTGACACACCGCCACGTCAATCCCGAACAGTTTAG

Protein sequence

>MS.gene79253.t1

MSTLIQKPTQISPRQRKIIEKSHLEEAFESAKTTEEMLKAFSEMEISFNEKELGLAALKIGLKLDREGGDHEKALEFANRALKVFENEKKDSFPYAMSLQLMGSLNYGLNRFSDSLGYLNKANRVLGRLENEGVCVDDVRPVLHAVQFELANVKTAMGRREEALENLRKCLEIKEMTFEEDSEELGKGNRDLAEAYVAVLNFKEALPYCLKALEIHTKRLGMNSVEVAHDRKLLGIVYSGMEDHEKALEQNVLAQKILKNWNLSSDLLRAEVDAANMMIALGRYDEAVGTLKNVVNQTEKDSETRALVLVSMGKALCNQEKFADCKRCLEISIGILDKREQITPVEVSEAYSEISMLYETMNEFETAISLLKRALALLEKLPQEQHSEGSVSARIGWLLLLTGKVKQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQMFAVAKDIMEVSLGPHHADTIEACQNLSKAYGDIGSHSLAIEFQQQVIDAWESHGASAEEELREAQRLLEQLKKKARGVSANEVPMKALPFPNNNTHAASNNSQPDIPLHQSHNSTPAASSNSQPDTPPRQSRTV