Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79253.t1 | XP_013468521.1 | 96 | 547 | 22 | 0 | 2 | 548 | 48 | 594 | 4.10E-276 | 960.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79253.t1 | Q9LII8 | 30.1 | 482 | 320 | 8 | 63 | 532 | 163 | 639 | 3.1e-46 | 188.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79253.t1 | A0A072VMA4 | 96.0 | 547 | 22 | 0 | 2 | 548 | 48 | 594 | 3.0e-276 | 960.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049207 | MS.gene79253 | 0.832959 | 7.02E-56 | -1.69E-46 |
| MS.gene049254 | MS.gene79253 | 0.809984 | 1.44E-50 | -1.69E-46 |
| MS.gene049343 | MS.gene79253 | 0.836016 | 1.20E-56 | -1.69E-46 |
| MS.gene049666 | MS.gene79253 | 0.81896 | 1.49E-52 | -1.69E-46 |
| MS.gene049824 | MS.gene79253 | 0.834058 | 3.73E-56 | -1.69E-46 |
| MS.gene049825 | MS.gene79253 | 0.85297 | 3.25E-61 | -1.69E-46 |
| MS.gene049873 | MS.gene79253 | 0.844071 | 9.49E-59 | -1.69E-46 |
| MS.gene050026 | MS.gene79253 | 0.801792 | 7.62E-49 | -1.69E-46 |
| MS.gene050303 | MS.gene79253 | 0.820614 | 6.25E-53 | -1.69E-46 |
| MS.gene050559 | MS.gene79253 | 0.803631 | 3.18E-49 | -1.69E-46 |
| MS.gene050885 | MS.gene79253 | 0.803783 | 2.96E-49 | -1.69E-46 |
| MS.gene051574 | MS.gene79253 | 0.81132 | 7.43E-51 | -1.69E-46 |
| MS.gene051700 | MS.gene79253 | 0.812768 | 3.59E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene79253 | 0.818886 | 1.55E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene79253 | 0.812753 | 3.62E-51 | -1.69E-46 |
| MS.gene052582 | MS.gene79253 | 0.848077 | 7.71E-60 | -1.69E-46 |
| MS.gene052584 | MS.gene79253 | 0.855439 | 6.30E-62 | -1.69E-46 |
| MS.gene052717 | MS.gene79253 | 0.833253 | 5.93E-56 | -1.69E-46 |
| MS.gene052773 | MS.gene79253 | 0.80721 | 5.65E-50 | -1.69E-46 |
| MS.gene053080 | MS.gene79253 | 0.815545 | 8.75E-52 | -1.69E-46 |
| MS.gene05308 | MS.gene79253 | 0.819812 | 9.54E-53 | -1.69E-46 |
| MS.gene053122 | MS.gene79253 | 0.842946 | 1.90E-58 | -1.69E-46 |
| MS.gene053226 | MS.gene79253 | 0.874884 | 4.76E-68 | -1.69E-46 |
| MS.gene05365 | MS.gene79253 | 0.814003 | 1.92E-51 | -1.69E-46 |
| MS.gene053995 | MS.gene79253 | 0.803716 | 3.05E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene79253 | -0.802999 | 4.30E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene79253 | 0.805981 | 1.03E-49 | -1.69E-46 |
| MS.gene055166 | MS.gene79253 | 0.829982 | 3.79E-55 | -1.69E-46 |
| MS.gene055586 | MS.gene79253 | 0.800723 | 1.26E-48 | -1.69E-46 |
| MS.gene055589 | MS.gene79253 | 0.812937 | 3.30E-51 | -1.69E-46 |
| MS.gene055778 | MS.gene79253 | 0.833062 | 6.62E-56 | -1.69E-46 |
| MS.gene055808 | MS.gene79253 | 0.856955 | 2.27E-62 | -1.69E-46 |
| MS.gene055841 | MS.gene79253 | 0.805356 | 1.39E-49 | -1.69E-46 |
| MS.gene056091 | MS.gene79253 | 0.826587 | 2.50E-54 | -1.69E-46 |
| MS.gene056215 | MS.gene79253 | 0.803422 | 3.51E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene79253 | 0.815467 | 9.11E-52 | -1.69E-46 |
| MS.gene056403 | MS.gene79253 | 0.848671 | 5.28E-60 | -1.69E-46 |
| MS.gene056506 | MS.gene79253 | 0.811901 | 5.55E-51 | -1.69E-46 |
| MS.gene05659 | MS.gene79253 | 0.810591 | 1.07E-50 | -1.69E-46 |
| MS.gene056605 | MS.gene79253 | 0.828653 | 7.97E-55 | -1.69E-46 |
| MS.gene05689 | MS.gene79253 | 0.855142 | 7.69E-62 | -1.69E-46 |
| MS.gene057060 | MS.gene79253 | 0.806788 | 6.94E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene79253 | 0.812879 | 3.39E-51 | -1.69E-46 |
| MS.gene057314 | MS.gene79253 | 0.815397 | 9.44E-52 | -1.69E-46 |
| MS.gene058037 | MS.gene79253 | 0.809124 | 2.21E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene79253 | 0.804429 | 2.17E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene79253 | 0.800341 | 1.51E-48 | -1.69E-46 |
| MS.gene05950 | MS.gene79253 | 0.808383 | 3.18E-50 | -1.69E-46 |
| MS.gene05953 | MS.gene79253 | 0.836602 | 8.50E-57 | -1.69E-46 |
| MS.gene05954 | MS.gene79253 | 0.84602 | 2.82E-59 | -1.69E-46 |
| MS.gene059625 | MS.gene79253 | 0.822426 | 2.38E-53 | -1.69E-46 |
| MS.gene05985 | MS.gene79253 | -0.808635 | 2.81E-50 | -1.69E-46 |
| MS.gene059935 | MS.gene79253 | 0.876724 | 1.11E-68 | -1.69E-46 |
| MS.gene060365 | MS.gene79253 | 0.830353 | 3.08E-55 | -1.69E-46 |
| MS.gene060429 | MS.gene79253 | 0.838868 | 2.23E-57 | -1.69E-46 |
| MS.gene060521 | MS.gene79253 | 0.806206 | 9.21E-50 | -1.69E-46 |
| MS.gene060634 | MS.gene79253 | -0.806701 | 7.24E-50 | -1.69E-46 |
| MS.gene060830 | MS.gene79253 | 0.837733 | 4.37E-57 | -1.69E-46 |
| MS.gene061040 | MS.gene79253 | -0.80208 | 6.65E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79253.t1 | MTR_1g070145 | 96.986 | 564 | 17 | 0 | 1 | 564 | 47 | 610 | 0.0 | 1120 |
| MS.gene79253.t1 | MTR_8g099745 | 28.514 | 498 | 331 | 6 | 45 | 528 | 65 | 551 | 1.84e-47 | 175 |
| MS.gene79253.t1 | MTR_8g027385 | 27.621 | 496 | 338 | 8 | 45 | 529 | 52 | 537 | 1.02e-41 | 159 |
| MS.gene79253.t1 | MTR_3g077950 | 26.130 | 509 | 360 | 6 | 37 | 536 | 245 | 746 | 6.17e-41 | 159 |
| MS.gene79253.t1 | MTR_3g077950 | 26.130 | 509 | 360 | 6 | 37 | 536 | 273 | 774 | 6.86e-41 | 159 |
| MS.gene79253.t1 | MTR_6g007110 | 27.475 | 495 | 326 | 7 | 52 | 528 | 190 | 669 | 7.45e-39 | 152 |
| MS.gene79253.t1 | MTR_4g106900 | 24.847 | 491 | 357 | 5 | 45 | 528 | 167 | 652 | 1.57e-38 | 151 |
| MS.gene79253.t1 | MTR_6g007110 | 27.533 | 454 | 296 | 7 | 52 | 487 | 190 | 628 | 2.47e-35 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79253.t1 | AT2G31240 | 68.190 | 547 | 168 | 4 | 1 | 544 | 68 | 611 | 0.0 | 766 |
| MS.gene79253.t1 | AT3G27960 | 29.981 | 527 | 347 | 11 | 45 | 557 | 143 | 661 | 5.22e-52 | 189 |
| MS.gene79253.t1 | AT3G27960 | 29.981 | 527 | 347 | 11 | 45 | 557 | 143 | 661 | 5.22e-52 | 189 |
| MS.gene79253.t1 | AT3G27960 | 29.825 | 456 | 302 | 8 | 45 | 487 | 143 | 593 | 2.50e-47 | 175 |
| MS.gene79253.t1 | AT4G10840 | 28.797 | 507 | 326 | 9 | 47 | 529 | 78 | 573 | 1.30e-45 | 171 |
| MS.gene79253.t1 | AT4G10840 | 28.448 | 464 | 298 | 8 | 47 | 487 | 78 | 530 | 1.24e-41 | 158 |
| MS.gene79253.t1 | AT1G27500 | 26.793 | 474 | 334 | 5 | 68 | 533 | 161 | 629 | 2.57e-41 | 159 |
| MS.gene79253.t1 | AT1G27500 | 26.653 | 484 | 322 | 7 | 68 | 533 | 172 | 640 | 3.12e-41 | 159 |
Find 146 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTATGAGTTTGCAGTTAA+TGG | 0.164879 | 1.4:-57235737 | MS.gene79253:CDS |
| GAAGCAGGCTATTCCTTATT+TGG | 0.171283 | 1.4:-57234807 | MS.gene79253:CDS |
| TGGTTATATCTACAACAATT+TGG | 0.200770 | 1.4:-57234732 | MS.gene79253:CDS |
| AGCTTTGGTCCCAAACATTT+TGG | 0.213827 | 1.4:-57234758 | MS.gene79253:CDS |
| GCTGCATGTGTATTATTATT+AGG | 0.225487 | 1.4:+57232955 | None:intergenic |
| GGTATCTTAATAAGGCTAAT+AGG | 0.226066 | 1.4:-57235672 | MS.gene79253:CDS |
| TCAGCAGCACTTTCCAAATA+AGG | 0.230202 | 1.4:+57234794 | None:intergenic |
| TCGGAAGTGTTTGGAGATTA+AGG | 0.232786 | 1.4:-57235521 | MS.gene79253:CDS |
| TAATAAGGCTAATAGGGTTT+TGG | 0.236340 | 1.4:-57235665 | MS.gene79253:CDS |
| GAGGAAGATAGTGAGGAGTT+AGG | 0.240509 | 1.4:-57235487 | MS.gene79253:CDS |
| ATGCTGCAGGTGTACTATTA+TGG | 0.241724 | 1.4:+57232893 | None:intergenic |
| GGTTATATCTACAACAATTT+GGG | 0.261299 | 1.4:-57234731 | MS.gene79253:CDS |
| GGGTGGTTGTTGTTGCTTAC+AGG | 0.274076 | 1.4:-57234836 | MS.gene79253:CDS |
| GGCGCTTCCATATTGTTTAA+AGG | 0.274514 | 1.4:-57235410 | MS.gene79253:CDS |
| AGGAGTTAGGGAAAGGGAAT+AGG | 0.275680 | 1.4:-57235474 | MS.gene79253:CDS |
| GAGCATTTCTTCGGTTGTTT+TGG | 0.276205 | 1.4:+57235930 | None:intergenic |
| AAAAGTTTGCAGACTGTAAA+AGG | 0.282943 | 1.4:-57235063 | MS.gene79253:CDS |
| GGTTTAGCTGCATTGAAAAT+TGG | 0.289450 | 1.4:-57235862 | MS.gene79253:CDS |
| GTCTTAATTATGGTTTAAAT+AGG | 0.293303 | 1.4:-57235711 | MS.gene79253:CDS |
| TGTGTCAGGTTGGGAGTTAC+TGG | 0.296347 | 1.4:+57232870 | None:intergenic |
| AATAGGTTTAGTGATAGTTT+AGG | 0.302645 | 1.4:-57235694 | MS.gene79253:CDS |
| TCAAAGGCATATGGTGATAT+TGG | 0.308827 | 1.4:-57234584 | MS.gene79253:CDS |
| AGGAAGATAGTGAGGAGTTA+GGG | 0.310369 | 1.4:-57235486 | MS.gene79253:CDS |
| ATAGGTTTAGTGATAGTTTA+GGG | 0.311847 | 1.4:-57235693 | MS.gene79253:CDS |
| TTAATGGGTAGTCTTAATTA+TGG | 0.322455 | 1.4:-57235721 | MS.gene79253:CDS |
| TCTAACGCCTTTAAACAATA+TGG | 0.334737 | 1.4:+57235403 | None:intergenic |
| CCTCCGAGTGCTGCTCTTGT+GGG | 0.336592 | 1.4:+57234879 | None:intergenic |
| TATGTCAGGTTGGGAGTTAT+TGG | 0.341920 | 1.4:+57232930 | None:intergenic |
| AGGTGTTTAGAGATTTCTAT+TGG | 0.345983 | 1.4:-57235043 | MS.gene79253:CDS |
| GTATCTTAATAAGGCTAATA+GGG | 0.348444 | 1.4:-57235671 | MS.gene79253:CDS |
| GAGATACATACGAAGCGATT+AGG | 0.352147 | 1.4:-57235382 | MS.gene79253:CDS |
| GGCGTTGGAGCAGAATGTTT+TGG | 0.357994 | 1.4:-57235284 | MS.gene79253:CDS |
| AGAGAATCTTCGGAAGTGTT+TGG | 0.370920 | 1.4:-57235530 | MS.gene79253:CDS |
| GCGAATATGATGATTGCTTT+GGG | 0.375275 | 1.4:-57235199 | MS.gene79253:CDS |
| ATAACCAACTCCAAAATGTT+TGG | 0.376664 | 1.4:+57234748 | None:intergenic |
| CTTCTTGGGATTGTTTATAG+TGG | 0.378113 | 1.4:-57235325 | MS.gene79253:CDS |
| GTGTTTGTGTTGATGATGTT+AGG | 0.380305 | 1.4:-57235624 | MS.gene79253:CDS |
| GCGCATGATAGGAAGCTTCT+TGG | 0.385283 | 1.4:-57235340 | MS.gene79253:CDS |
| TAGTTTAGGGTATCTTAATA+AGG | 0.387240 | 1.4:-57235680 | MS.gene79253:CDS |
| GGAAATTTCATTCAATGAAA+AGG | 0.398867 | 1.4:-57235890 | MS.gene79253:CDS |
| CTTCTTCTGCACTTGCTCCA+TGG | 0.399591 | 1.4:+57233070 | None:intergenic |
| AGATACATACGAAGCGATTA+GGG | 0.403607 | 1.4:-57235381 | MS.gene79253:CDS |
| CCCTCCGAGTGCTGCTCTTG+TGG | 0.404697 | 1.4:+57234878 | None:intergenic |
| GCTATGAGTTTGCAGTTAAT+GGG | 0.407040 | 1.4:-57235736 | MS.gene79253:CDS |
| CTGTTGAGGTTGCGCATGAT+AGG | 0.407770 | 1.4:-57235351 | MS.gene79253:CDS |
| GGATGTCTGCTAAACTGTTC+GGG | 0.410647 | 1.4:+57232834 | None:intergenic |
| TGCGAATATGATGATTGCTT+TGG | 0.410869 | 1.4:-57235200 | MS.gene79253:CDS |
| AGCAGCAAGTTATAGATGCT+TGG | 0.412778 | 1.4:-57233098 | MS.gene79253:CDS |
| AGCTCTTGTGCTTGTATCAA+TGG | 0.413035 | 1.4:-57235107 | MS.gene79253:CDS |
| GGAGTTAGGGAAAGGGAATA+GGG | 0.418677 | 1.4:-57235473 | MS.gene79253:CDS |
| TAACCAACTCCAAAATGTTT+GGG | 0.419203 | 1.4:+57234749 | None:intergenic |
| TGGGATTGTTTATAGTGGGA+TGG | 0.423640 | 1.4:-57235320 | MS.gene79253:CDS |
| GGAAGTGTATCTGCAAGAAT+AGG | 0.426493 | 1.4:-57234857 | MS.gene79253:CDS |
| GGGGAAAGCGTTATGTAATC+AGG | 0.427739 | 1.4:-57235086 | MS.gene79253:CDS |
| CGCATGATAGGAAGCTTCTT+GGG | 0.430357 | 1.4:-57235339 | MS.gene79253:CDS |
| GAATGCTTTGAGCATTTCTT+CGG | 0.432282 | 1.4:+57235921 | None:intergenic |
| AGGATGTCTGCTAAACTGTT+CGG | 0.436022 | 1.4:+57232833 | None:intergenic |
| GCTCTTGTGCTTGTATCAAT+GGG | 0.440321 | 1.4:-57235106 | MS.gene79253:CDS |
| AAGAGGCGCTAGAGAATCTT+CGG | 0.442376 | 1.4:-57235540 | MS.gene79253:CDS |
| GGTGTTTAGAGATTTCTATT+GGG | 0.444294 | 1.4:-57235042 | MS.gene79253:CDS |
| GATTGACGTGGCGGTGTGTC+AGG | 0.451015 | 1.4:+57232856 | None:intergenic |
| GCAGCAAGTTATAGATGCTT+GGG | 0.454415 | 1.4:-57233097 | MS.gene79253:CDS |
| TCATGCTGTGCAATTTGAGT+TGG | 0.455338 | 1.4:-57235593 | MS.gene79253:CDS |
| TGCTGCAGGTGTACTATTAT+GGG | 0.459170 | 1.4:+57232894 | None:intergenic |
| GAAGTGTATCTGCAAGAATA+GGG | 0.459783 | 1.4:-57234856 | MS.gene79253:CDS |
| ATAGTGAGGAGTTAGGGAAA+GGG | 0.461155 | 1.4:-57235480 | MS.gene79253:CDS |
| GGAAAGGGAAGAGCCTTCAT+AGG | 0.464833 | 1.4:+57232976 | None:intergenic |
| AACTGCAAACTCATAGCATA+AGG | 0.469559 | 1.4:+57235742 | None:intergenic |
| CAGAATCTTTCAAAGGCATA+TGG | 0.471243 | 1.4:-57234593 | MS.gene79253:CDS |
| TGTGTATTATTATTAGGAAA+GGG | 0.478913 | 1.4:+57232961 | None:intergenic |
| GTCAGCAGCGCAGATGTTTG+CGG | 0.481206 | 1.4:-57234678 | MS.gene79253:CDS |
| TTCTTGGGATTGTTTATAGT+GGG | 0.486322 | 1.4:-57235324 | MS.gene79253:CDS |
| AGAAACCTCCATGATATCCT+TGG | 0.489502 | 1.4:+57234652 | None:intergenic |
| TCATTCAATGAAAAGGAGCT+TGG | 0.491295 | 1.4:-57235883 | MS.gene79253:CDS |
| GCTAATGTTAAGACGGCGAT+GGG | 0.491334 | 1.4:-57235571 | MS.gene79253:CDS |
| TTTGGGTAGGTTAGAGAATG+AGG | 0.492492 | 1.4:-57235647 | MS.gene79253:CDS |
| GAAAGGTTGAAAGAGAGCTT+TGG | 0.492632 | 1.4:-57234773 | MS.gene79253:CDS |
| GTTGTTGTTGCTTACAGGTA+AGG | 0.496912 | 1.4:-57234831 | MS.gene79253:CDS |
| CAGCATATTTAGAGTTGGAT+AGG | 0.498511 | 1.4:-57234706 | MS.gene79253:CDS |
| TGCAAATGAGGTTCCTATGA+AGG | 0.499756 | 1.4:-57232989 | MS.gene79253:CDS |
| GAAGAATTGGAATCTCAGTT+CGG | 0.503248 | 1.4:-57235248 | MS.gene79253:CDS |
| GATGTAACGGTATGTCAGGT+TGG | 0.504036 | 1.4:+57232920 | None:intergenic |
| GATAGTGAGGAGTTAGGGAA+AGG | 0.510103 | 1.4:-57235481 | MS.gene79253:CDS |
| CTGCGATTTCGTTGCTGAAG+AGG | 0.511189 | 1.4:-57234925 | MS.gene79253:CDS |
| ATGTAACGGTATGTCAGGTT+GGG | 0.511251 | 1.4:+57232921 | None:intergenic |
| TTGGGTAGGTTAGAGAATGA+GGG | 0.511672 | 1.4:-57235646 | MS.gene79253:CDS |
| ACGTGGCGGTGTGTCAGGTT+GGG | 0.514066 | 1.4:+57232861 | None:intergenic |
| GATATCATGGAGGTTTCTCT+TGG | 0.517703 | 1.4:-57234647 | MS.gene79253:CDS |
| GTTCATAGTTTCATATAGCA+TGG | 0.522310 | 1.4:+57234958 | None:intergenic |
| GATTGTTTATAGTGGGATGG+AGG | 0.522341 | 1.4:-57235317 | MS.gene79253:CDS |
| GACGTGGCGGTGTGTCAGGT+TGG | 0.523342 | 1.4:+57232860 | None:intergenic |
| GCTCAAAGCATTCAGTGAGA+TGG | 0.525816 | 1.4:-57235911 | MS.gene79253:CDS |
| TGCGATTTCGTTGCTGAAGA+GGG | 0.530007 | 1.4:-57234924 | MS.gene79253:CDS |
| TGCGGTAGCCAAGGATATCA+TGG | 0.531067 | 1.4:-57234660 | MS.gene79253:CDS |
| CCGCGGTGTCTCTGCAAATG+AGG | 0.535152 | 1.4:-57233001 | MS.gene79253:CDS |
| TGTCTAGGAGAGATTTGAGT+GGG | 0.536028 | 1.4:+57236000 | None:intergenic |
| GAAAGGGAATAGGGATTTAG+CGG | 0.537665 | 1.4:-57235464 | MS.gene79253:CDS |
| GCTTACAGGTAAGGTGAAGC+AGG | 0.537806 | 1.4:-57234822 | MS.gene79253:CDS |
| GGAAGTTTCTGAGGCATACT+CGG | 0.541766 | 1.4:-57234987 | MS.gene79253:CDS |
| CTATTATGGGATTGATGTAA+CGG | 0.547602 | 1.4:+57232907 | None:intergenic |
| AACATCTGCGCTGCTGACTG+AGG | 0.547767 | 1.4:+57234683 | None:intergenic |
| GAAACTCAATTGCAAGGGAA+TGG | 0.548823 | 1.4:+57233121 | None:intergenic |
| TGAAGCTTGATCGCGAAGGT+GGG | 0.549482 | 1.4:-57235837 | MS.gene79253:CDS |
| ATGTGTATTATTATTAGGAA+AGG | 0.552489 | 1.4:+57232960 | None:intergenic |
| CCACAAGAGCAGCACTCGGA+GGG | 0.552886 | 1.4:-57234878 | MS.gene79253:CDS |
| GGAGGATCATGAGAAGGCGT+TGG | 0.552931 | 1.4:-57235299 | MS.gene79253:CDS |
| CTGAAGCTTGATCGCGAAGG+TGG | 0.553107 | 1.4:-57235838 | MS.gene79253:CDS |
| TGAGTTGGCTAATGTTAAGA+CGG | 0.567694 | 1.4:-57235578 | MS.gene79253:CDS |
| GATTGATGTAACGGTATGTC+AGG | 0.570067 | 1.4:+57232916 | None:intergenic |
| GGCGATGGGGAGGAGAGAAG+AGG | 0.570707 | 1.4:-57235557 | MS.gene79253:CDS |
| GGCTAATGTTAAGACGGCGA+TGG | 0.573411 | 1.4:-57235572 | MS.gene79253:CDS |
| GGGAGATACGATGAAGCTGT+TGG | 0.573991 | 1.4:-57235178 | MS.gene79253:CDS |
| GCTGCTGAAACTCAATTGCA+AGG | 0.574173 | 1.4:+57233115 | None:intergenic |
| AATTGCACAGCATGAAGCAC+AGG | 0.576090 | 1.4:+57235601 | None:intergenic |
| GTTATATCTACAACAATTTG+GGG | 0.576788 | 1.4:-57234730 | MS.gene79253:CDS |
| GAAGCTTGATCGCGAAGGTG+GGG | 0.577273 | 1.4:-57235836 | MS.gene79253:CDS |
| AGGCATATGGTGATATTGGA+AGG | 0.580409 | 1.4:-57234580 | MS.gene79253:intron |
| CTGCTGAAACTCAATTGCAA+GGG | 0.582844 | 1.4:+57233116 | None:intergenic |
| ATTAGGGATGAATTCTGTTG+AGG | 0.587352 | 1.4:-57235365 | MS.gene79253:CDS |
| CTCATTTGCAGAGACACCGC+GGG | 0.591950 | 1.4:+57233002 | None:intergenic |
| TACACCGGTGGAAGTTTCTG+AGG | 0.595722 | 1.4:-57234996 | MS.gene79253:CDS |
| ATGTTAAGACGGCGATGGGG+AGG | 0.595931 | 1.4:-57235567 | MS.gene79253:CDS |
| GCAGATGTTTGCGGTAGCCA+AGG | 0.596662 | 1.4:-57234669 | MS.gene79253:CDS |
| AGCATGTCAGAATCTTTCAA+AGG | 0.601070 | 1.4:-57234600 | MS.gene79253:CDS |
| TGGGAGTTACTGGATGCTGC+AGG | 0.602801 | 1.4:+57232880 | None:intergenic |
| ATTTGGAAAGTGCTGCTGAA+AGG | 0.603968 | 1.4:-57234790 | MS.gene79253:CDS |
| GCTCCCACAAGAGCAGCACT+CGG | 0.608859 | 1.4:-57234882 | MS.gene79253:CDS |
| ATAGATGCTTGGGAAAGCCA+TGG | 0.619820 | 1.4:-57233087 | MS.gene79253:CDS |
| TAAACTGTTCGGGATTGACG+TGG | 0.629660 | 1.4:+57232844 | None:intergenic |
| TGGGATGGAGGATCATGAGA+AGG | 0.633696 | 1.4:-57235305 | MS.gene79253:CDS |
| TTTAGCGGAAGCTTATGTTG+CGG | 0.637589 | 1.4:-57235449 | MS.gene79253:CDS |
| CCCACAAGAGCAGCACTCGG+AGG | 0.640444 | 1.4:-57234879 | MS.gene79253:CDS |
| AAGAGAACAGATTACACCGG+TGG | 0.642489 | 1.4:-57235008 | MS.gene79253:CDS |
| CGAATATGATGATTGCTTTG+GGG | 0.644617 | 1.4:-57235198 | MS.gene79253:CDS |
| TCAATTGTATCTGCATGATG+TGG | 0.648031 | 1.4:+57234623 | None:intergenic |
| ACTGTTCGGGATTGACGTGG+CGG | 0.661175 | 1.4:+57232847 | None:intergenic |
| TTGTCTAGGAGAGATTTGAG+TGG | 0.661188 | 1.4:+57235999 | None:intergenic |
| TATGCCTCAGAAACTTCCAC+CGG | 0.674657 | 1.4:+57234992 | None:intergenic |
| GGTCTGAAGCTTGATCGCGA+AGG | 0.693387 | 1.4:-57235841 | MS.gene79253:CDS |
| GTGTATCTGCAAGAATAGGG+TGG | 0.702061 | 1.4:-57234853 | MS.gene79253:CDS |
| CCTCATTTGCAGAGACACCG+CGG | 0.706770 | 1.4:+57233001 | None:intergenic |
| CTCTTGTGCTTGTATCAATG+GGG | 0.708946 | 1.4:-57235105 | MS.gene79253:CDS |
| TAAAAGAGAACAGATTACAC+CGG | 0.715171 | 1.4:-57235011 | MS.gene79253:CDS |
| TTATATCTACAACAATTTGG+GGG | 0.722117 | 1.4:-57234729 | MS.gene79253:CDS |
| CTAATGTTAAGACGGCGATG+GGG | 0.738436 | 1.4:-57235570 | MS.gene79253:CDS |
| GGTAGCCAAGGATATCATGG+AGG | 0.746203 | 1.4:-57234657 | MS.gene79253:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTATTTCATTATTTAGAT+CGG | - | chr1.4:57235360-57235379 | MS.gene79253:CDS | 15.0% |
| !! | CTGATTTCAAAATAAAAATT+AGG | - | chr1.4:57234577-57234596 | MS.gene79253:intron | 15.0% |
| !! | CTTGAATTACAAAAATATTT+AGG | - | chr1.4:57235486-57235505 | MS.gene79253:CDS | 15.0% |
| !! | TTACAAAAATATTTAGGAAT+CGG | - | chr1.4:57235492-57235511 | MS.gene79253:CDS | 15.0% |
| !!! | ATCAATTATTTTGAAACTTA+AGG | - | chr1.4:57234451-57234470 | MS.gene79253:intron | 15.0% |
| !!! | CTTTATTTTATCTTTTGTTA+TGG | + | chr1.4:57234667-57234686 | None:intergenic | 15.0% |
| !! | AATTCAAGTACATACTATAT+AGG | + | chr1.4:57235474-57235493 | None:intergenic | 20.0% |
| !! | ATGTGTATTATTATTAGGAA+AGG | + | chr1.4:57235907-57235926 | None:intergenic | 20.0% |
| !! | GTCTTAATTATGGTTTAAAT+AGG | - | chr1.4:57233153-57233172 | MS.gene79253:intron | 20.0% |
| !! | TGTGTATTATTATTAGGAAA+GGG | + | chr1.4:57235906-57235925 | None:intergenic | 20.0% |
| !! | TTTCAAAATAATTGATCCAA+TGG | + | chr1.4:57234447-57234466 | None:intergenic | 20.0% |
| !!! | ATTATTTTGAAACTTAAGGA+TGG | - | chr1.4:57234455-57234474 | MS.gene79253:intron | 20.0% |
| !!! | CAGTTTAAACATTTAACTTT+TGG | - | chr1.4:57234391-57234410 | MS.gene79253:intron | 20.0% |
| !!! | TTCATGTTTTCCTAAAATAT+TGG | - | chr1.4:57235712-57235731 | MS.gene79253:CDS | 20.0% |
| ! | AAAAATATTTAGGAATCGGA+AGG | - | chr1.4:57235496-57235515 | MS.gene79253:CDS | 25.0% |
| ! | AATAAAAATTAGGCTGTGTT+TGG | - | chr1.4:57234587-57234606 | MS.gene79253:CDS | 25.0% |
| ! | AATAGGTTTAGTGATAGTTT+AGG | - | chr1.4:57233170-57233189 | MS.gene79253:intron | 25.0% |
| ! | ATAGGTTTAGTGATAGTTTA+GGG | - | chr1.4:57233171-57233190 | MS.gene79253:intron | 25.0% |
| ! | CATTCATTAAATGATGTATG+TGG | - | chr1.4:57234966-57234985 | MS.gene79253:CDS | 25.0% |
| ! | CATTCATTAAATGATGTATG+TGG | + | chr1.4:57234985-57234966 | None:intergenic | 25.0% |
| ! | GGAAATTTCATTCAATGAAA+AGG | - | chr1.4:57232974-57232993 | MS.gene79253:CDS | 25.0% |
| ! | GGTTATATCTACAACAATTT+GGG | - | chr1.4:57234133-57234152 | MS.gene79253:intron | 25.0% |
| ! | GTATCTTAATAAGGCTAATA+GGG | - | chr1.4:57233193-57233212 | MS.gene79253:intron | 25.0% |
| ! | GTTATATCTACAACAATTTG+GGG | - | chr1.4:57234134-57234153 | MS.gene79253:intron | 25.0% |
| ! | TGGTTATATCTACAACAATT+TGG | - | chr1.4:57234132-57234151 | MS.gene79253:intron | 25.0% |
| ! | TTATATCTACAACAATTTGG+GGG | - | chr1.4:57234135-57234154 | MS.gene79253:intron | 25.0% |
| ! | TTTCAAGAGAAACAATATCA+GGG | + | chr1.4:57234340-57234359 | None:intergenic | 25.0% |
| ! | TTTCATATAAGTAGCTATGT+TGG | - | chr1.4:57234696-57234715 | MS.gene79253:CDS | 25.0% |
| !! | AACTGTATATGTTTTTCCAA+CGG | - | chr1.4:57235684-57235703 | MS.gene79253:CDS | 25.0% |
| !! | TAGTTTAGGGTATCTTAATA+AGG | - | chr1.4:57233184-57233203 | MS.gene79253:intron | 25.0% |
| !! | TTAATGGGTAGTCTTAATTA+TGG | - | chr1.4:57233143-57233162 | MS.gene79253:intron | 25.0% |
| !! | TTGTTTCTCTTGAAAACAAT+TGG | - | chr1.4:57234345-57234364 | MS.gene79253:intron | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | - | chr1.4:57235040-57235059 | MS.gene79253:CDS | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | + | chr1.4:57235059-57235040 | None:intergenic | 25.0% |
| !!! | ATCAATGTTTTGCTTGTTTT+TGG | - | chr1.4:57235325-57235344 | MS.gene79253:CDS | 25.0% |
| !!! | CTTGAAAACAATTGGTTTTT+GGG | - | chr1.4:57234353-57234372 | MS.gene79253:intron | 25.0% |
| !!! | TCTTGAAAACAATTGGTTTT+TGG | - | chr1.4:57234352-57234371 | MS.gene79253:intron | 25.0% |
| !!! | TTTTCAAGAGAAACAATATC+AGG | + | chr1.4:57234341-57234360 | None:intergenic | 25.0% |
| AAAAGTTTGCAGACTGTAAA+AGG | - | chr1.4:57233801-57233820 | MS.gene79253:intron | 30.0% | |
| AAGCACATTATCCAAAAACA+AGG | + | chr1.4:57235625-57235644 | None:intergenic | 30.0% | |
| AATATGAATCCCACACTATT+AGG | + | chr1.4:57234424-57234443 | None:intergenic | 30.0% | |
| AGCACATTATCCAAAAACAA+GGG | + | chr1.4:57235624-57235643 | None:intergenic | 30.0% | |
| AGGTGTTTAGAGATTTCTAT+TGG | - | chr1.4:57233821-57233840 | MS.gene79253:intron | 30.0% | |
| ATAACCAACTCCAAAATGTT+TGG | + | chr1.4:57234119-57234138 | None:intergenic | 30.0% | |
| ATCTTGAGTACAAAGAGTTA+TGG | - | chr1.4:57235249-57235268 | MS.gene79253:CDS | 30.0% | |
| CTATTATGGGATTGATGTAA+CGG | + | chr1.4:57235960-57235979 | None:intergenic | 30.0% | |
| GCTGCATGTGTATTATTATT+AGG | + | chr1.4:57235912-57235931 | None:intergenic | 30.0% | |
| GGTATCTTAATAAGGCTAAT+AGG | - | chr1.4:57233192-57233211 | MS.gene79253:intron | 30.0% | |
| GGTGTTTAGAGATTTCTATT+GGG | - | chr1.4:57233822-57233841 | MS.gene79253:intron | 30.0% | |
| GTTCATAGTTTCATATAGCA+TGG | + | chr1.4:57233909-57233928 | None:intergenic | 30.0% | |
| TAAAAGAGAACAGATTACAC+CGG | - | chr1.4:57233853-57233872 | MS.gene79253:intron | 30.0% | |
| TAACCAACTCCAAAATGTTT+GGG | + | chr1.4:57234118-57234137 | None:intergenic | 30.0% | |
| TCTAACGCCTTTAAACAATA+TGG | + | chr1.4:57233464-57233483 | None:intergenic | 30.0% | |
| TTATGAGCATAGCATGAATA+AGG | + | chr1.4:57234848-57234867 | None:intergenic | 30.0% | |
| TTCTTGGGATTGTTTATAGT+GGG | - | chr1.4:57233540-57233559 | MS.gene79253:intron | 30.0% | |
| ! | AATAAGGCTAATAGGGTTTT+GGG | - | chr1.4:57233200-57233219 | MS.gene79253:intron | 30.0% |
| ! | GAAAACATGAATTTTTCCGT+TGG | + | chr1.4:57235703-57235722 | None:intergenic | 30.0% |
| ! | TAATAAGGCTAATAGGGTTT+TGG | - | chr1.4:57233199-57233218 | MS.gene79253:intron | 30.0% |
| !!! | TGTTGCGGTTTTGAATTTTA+AGG | - | chr1.4:57233430-57233449 | MS.gene79253:intron | 30.0% |
| AACTATATGAGAGGTAGACA+TGG | + | chr1.4:57234883-57234902 | None:intergenic | 35.0% | |
| AACTGCAAACTCATAGCATA+AGG | + | chr1.4:57233125-57233144 | None:intergenic | 35.0% | |
| AGATACATACGAAGCGATTA+GGG | - | chr1.4:57233483-57233502 | MS.gene79253:intron | 35.0% | |
| AGCAATTCCATGTGCAATTA+TGG | + | chr1.4:57235282-57235301 | None:intergenic | 35.0% | |
| AGCATGTCAGAATCTTTCAA+AGG | - | chr1.4:57234264-57234283 | MS.gene79253:intron | 35.0% | |
| AGGTAGACATGGAAACTAAA+AGG | + | chr1.4:57234872-57234891 | None:intergenic | 35.0% | |
| ATATGCAATTGAGCTCGAAA+TGG | + | chr1.4:57235387-57235406 | None:intergenic | 35.0% | |
| ATTAGGGATGAATTCTGTTG+AGG | - | chr1.4:57233499-57233518 | MS.gene79253:intron | 35.0% | |
| CAATTAAAGAAAAAAGCCCG+CGG | - | chr1.4:57235846-57235865 | MS.gene79253:CDS | 35.0% | |
| CGAATATGATGATTGCTTTG+GGG | - | chr1.4:57233666-57233685 | MS.gene79253:intron | 35.0% | |
| CTGACATAAAATAGAGTGCA+GGG | - | chr1.4:57234510-57234529 | MS.gene79253:intron | 35.0% | |
| CTTCTTGGGATTGTTTATAG+TGG | - | chr1.4:57233539-57233558 | MS.gene79253:intron | 35.0% | |
| GAAGAATTGGAATCTCAGTT+CGG | - | chr1.4:57233616-57233635 | MS.gene79253:intron | 35.0% | |
| GAAGTGTATCTGCAAGAATA+GGG | - | chr1.4:57234008-57234027 | MS.gene79253:intron | 35.0% | |
| GATGGAAAGAACTATATGAG+AGG | + | chr1.4:57234892-57234911 | None:intergenic | 35.0% | |
| GCAATTCCATGTGCAATTAT+GGG | + | chr1.4:57235281-57235300 | None:intergenic | 35.0% | |
| GCGAATATGATGATTGCTTT+GGG | - | chr1.4:57233665-57233684 | MS.gene79253:intron | 35.0% | |
| GCTATGAGTTTGCAGTTAAT+GGG | - | chr1.4:57233128-57233147 | MS.gene79253:intron | 35.0% | |
| GGTTTAGCTGCATTGAAAAT+TGG | - | chr1.4:57233002-57233021 | MS.gene79253:CDS | 35.0% | |
| TAAGAACTAGCAACAGTGTT+TGG | + | chr1.4:57234786-57234805 | None:intergenic | 35.0% | |
| TATGGTGATATTGGAAGGTA+TGG | - | chr1.4:57234289-57234308 | MS.gene79253:intron | 35.0% | |
| TCAAATAAGCCATTCCAAAC+AGG | - | chr1.4:57234821-57234840 | MS.gene79253:CDS | 35.0% | |
| TCAATTGTATCTGCATGATG+TGG | + | chr1.4:57234244-57234263 | None:intergenic | 35.0% | |
| TCATTCAATGAAAAGGAGCT+TGG | - | chr1.4:57232981-57233000 | MS.gene79253:CDS | 35.0% | |
| TCTGACATAAAATAGAGTGC+AGG | - | chr1.4:57234509-57234528 | MS.gene79253:intron | 35.0% | |
| TGCGAATATGATGATTGCTT+TGG | - | chr1.4:57233664-57233683 | MS.gene79253:intron | 35.0% | |
| TGCTATGAGTTTGCAGTTAA+TGG | - | chr1.4:57233127-57233146 | MS.gene79253:intron | 35.0% | |
| ! | AATTTAGACTTGGTTGTTCC+CGG | - | chr1.4:57235522-57235541 | MS.gene79253:CDS | 35.0% |
| ! | CAGAATCTTTCAAAGGCATA+TGG | - | chr1.4:57234271-57234290 | MS.gene79253:intron | 35.0% |
| ! | CAGCATATTTAGAGTTGGAT+AGG | - | chr1.4:57234158-57234177 | MS.gene79253:intron | 35.0% |
| ! | CGGAAGGTATAATTTAGACT+TGG | - | chr1.4:57235512-57235531 | MS.gene79253:CDS | 35.0% |
| ! | GAATGCTTTGAGCATTTCTT+CGG | + | chr1.4:57232946-57232965 | None:intergenic | 35.0% |
| ! | GATTAAGGAGATGACTTTTG+AGG | - | chr1.4:57233358-57233377 | MS.gene79253:intron | 35.0% |
| ! | GGCTGCAATTCCAATATTTT+AGG | + | chr1.4:57235725-57235744 | None:intergenic | 35.0% |
| ! | TCAAAGGCATATGGTGATAT+TGG | - | chr1.4:57234280-57234299 | MS.gene79253:intron | 35.0% |
| ! | TGAGTTGGCTAATGTTAAGA+CGG | - | chr1.4:57233286-57233305 | MS.gene79253:intron | 35.0% |
| ! | TGTTTGGAATGGCTTATTTG+AGG | + | chr1.4:57234822-57234841 | None:intergenic | 35.0% |
| !! | CGCAGAAGATTTTGAAGAAT+TGG | - | chr1.4:57233603-57233622 | MS.gene79253:intron | 35.0% |
| !! | GTGTTTGTGTTGATGATGTT+AGG | - | chr1.4:57233240-57233259 | MS.gene79253:intron | 35.0% |
| !!! | TGCGGTTTTGAATTTTAAGG+AGG | - | chr1.4:57233433-57233452 | MS.gene79253:intron | 35.0% |
| !!! | TTGTTTCTGTCCCTTGTTTT+TGG | - | chr1.4:57235611-57235630 | MS.gene79253:CDS | 35.0% |
| ACACCAAATCAGAACTCTCT+TGG | + | chr1.4:57235135-57235154 | None:intergenic | 40.0% | |
| AGAAACCTCCATGATATCCT+TGG | + | chr1.4:57234215-57234234 | None:intergenic | 40.0% | |
| AGCAGCAAGTTATAGATGCT+TGG | - | chr1.4:57235766-57235785 | MS.gene79253:CDS | 40.0% | |
| AGCATGAATAAGGACCTGTT+TGG | + | chr1.4:57234838-57234857 | None:intergenic | 40.0% | |
| AGCTCTTGTGCTTGTATCAA+TGG | - | chr1.4:57233757-57233776 | MS.gene79253:intron | 40.0% | |
| AGGAAGATAGTGAGGAGTTA+GGG | - | chr1.4:57233378-57233397 | MS.gene79253:intron | 40.0% | |
| AGGCATATGGTGATATTGGA+AGG | - | chr1.4:57234284-57234303 | MS.gene79253:intron | 40.0% | |
| ATAGTGAGGAGTTAGGGAAA+GGG | - | chr1.4:57233384-57233403 | MS.gene79253:intron | 40.0% | |
| ATCTATCAAACTACACCCTC+CGG | - | chr1.4:57234909-57234928 | MS.gene79253:CDS | 40.0% | |
| ATGCTGCAGGTGTACTATTA+TGG | + | chr1.4:57235974-57235993 | None:intergenic | 40.0% | |
| ATGTAACGGTATGTCAGGTT+GGG | + | chr1.4:57235946-57235965 | None:intergenic | 40.0% | |
| CTCTTGTGCTTGTATCAATG+GGG | - | chr1.4:57233759-57233778 | MS.gene79253:intron | 40.0% | |
| CTGCTGAAACTCAATTGCAA+GGG | + | chr1.4:57235751-57235770 | None:intergenic | 40.0% | |
| GAAACTCAATTGCAAGGGAA+TGG | + | chr1.4:57235746-57235765 | None:intergenic | 40.0% | |
| GAAAGGGAATAGGGATTTAG+CGG | - | chr1.4:57233400-57233419 | MS.gene79253:intron | 40.0% | |
| GAAAGGTTGAAAGAGAGCTT+TGG | - | chr1.4:57234091-57234110 | MS.gene79253:intron | 40.0% | |
| GAAGCAGGCTATTCCTTATT+TGG | - | chr1.4:57234057-57234076 | MS.gene79253:intron | 40.0% | |
| GAATAAGGACCTGTTTGGAA+TGG | + | chr1.4:57234833-57234852 | None:intergenic | 40.0% | |
| GAGATACATACGAAGCGATT+AGG | - | chr1.4:57233482-57233501 | MS.gene79253:intron | 40.0% | |
| GAGCACAGAAGAGAATATAG+TGG | + | chr1.4:57235111-57235130 | None:intergenic | 40.0% | |
| GATATCATGGAGGTTTCTCT+TGG | - | chr1.4:57234217-57234236 | MS.gene79253:intron | 40.0% | |
| GATTGATGTAACGGTATGTC+AGG | + | chr1.4:57235951-57235970 | None:intergenic | 40.0% | |
| GCAATAAAACTTACACCCTC+CGG | + | chr1.4:57235062-57235081 | None:intergenic | 40.0% | |
| GCAGCAAGTTATAGATGCTT+GGG | - | chr1.4:57235767-57235786 | MS.gene79253:CDS | 40.0% | |
| GCTCTTGTGCTTGTATCAAT+GGG | - | chr1.4:57233758-57233777 | MS.gene79253:intron | 40.0% | |
| GGACATACACCTAATAGTGT+GGG | - | chr1.4:57234412-57234431 | MS.gene79253:intron | 40.0% | |
| GGCGCTTCCATATTGTTTAA+AGG | - | chr1.4:57233454-57233473 | MS.gene79253:intron | 40.0% | |
| GTGTGGGATTCATATTCCAT+TGG | - | chr1.4:57234428-57234447 | MS.gene79253:intron | 40.0% | |
| TCAACGTAACATACTGTGAG+TGG | - | chr1.4:57235577-57235596 | MS.gene79253:CDS | 40.0% | |
| TCAGCAGCACTTTCCAAATA+AGG | + | chr1.4:57234073-57234092 | None:intergenic | 40.0% | |
| TCATGCTGTGCAATTTGAGT+TGG | - | chr1.4:57233271-57233290 | MS.gene79253:intron | 40.0% | |
| TGCAAATGAGGTTCCTATGA+AGG | - | chr1.4:57235875-57235894 | MS.gene79253:CDS | 40.0% | |
| TGCTGCAGGTGTACTATTAT+GGG | + | chr1.4:57235973-57235992 | None:intergenic | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr1.4:57235044-57235063 | MS.gene79253:CDS | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | + | chr1.4:57235063-57235044 | None:intergenic | 40.0% | |
| TGGACATACACCTAATAGTG+TGG | - | chr1.4:57234411-57234430 | MS.gene79253:intron | 40.0% | |
| TGTCTAGGAGAGATTTGAGT+GGG | + | chr1.4:57232867-57232886 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr1.4:57235043-57235062 | MS.gene79253:CDS | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | chr1.4:57235062-57235043 | None:intergenic | 40.0% | |
| TTGGGTAGGTTAGAGAATGA+GGG | - | chr1.4:57233218-57233237 | MS.gene79253:intron | 40.0% | |
| TTGTCTAGGAGAGATTTGAG+TGG | + | chr1.4:57232868-57232887 | None:intergenic | 40.0% | |
| TTTAGCGGAAGCTTATGTTG+CGG | - | chr1.4:57233415-57233434 | MS.gene79253:intron | 40.0% | |
| TTTGGGTAGGTTAGAGAATG+AGG | - | chr1.4:57233217-57233236 | MS.gene79253:intron | 40.0% | |
| ! | GAGCATTTCTTCGGTTGTTT+TGG | + | chr1.4:57232937-57232956 | None:intergenic | 40.0% |
| ! | GATTGTTTATAGTGGGATGG+AGG | - | chr1.4:57233547-57233566 | MS.gene79253:intron | 40.0% |
| ! | GGAAGTGTATCTGCAAGAAT+AGG | - | chr1.4:57234007-57234026 | MS.gene79253:intron | 40.0% |
| ! | GTTGTTGTTGCTTACAGGTA+AGG | - | chr1.4:57234033-57234052 | MS.gene79253:intron | 40.0% |
| ! | TCACCAAGAGAGTTCTGATT+TGG | - | chr1.4:57235129-57235148 | MS.gene79253:CDS | 40.0% |
| ! | TCGATGATTTTGCGTTGTCT+AGG | + | chr1.4:57232882-57232901 | None:intergenic | 40.0% |
| ! | TGGGATTGTTTATAGTGGGA+TGG | - | chr1.4:57233544-57233563 | MS.gene79253:intron | 40.0% |
| !! | AGAGAATCTTCGGAAGTGTT+TGG | - | chr1.4:57233334-57233353 | MS.gene79253:intron | 40.0% |
| !! | AGCTTTGGTCCCAAACATTT+TGG | - | chr1.4:57234106-57234125 | MS.gene79253:intron | 40.0% |
| !! | ATTTGGAAAGTGCTGCTGAA+AGG | - | chr1.4:57234074-57234093 | MS.gene79253:intron | 40.0% |
| !! | GACTTTTGAGGAAGATAGTG+AGG | - | chr1.4:57233370-57233389 | MS.gene79253:intron | 40.0% |
| !! | GAGAGATTTGAGTGGGTTTT+TGG | + | chr1.4:57232860-57232879 | None:intergenic | 40.0% |
| !! | TATGTCAGGTTGGGAGTTAT+TGG | + | chr1.4:57235937-57235956 | None:intergenic | 40.0% |
| !! | TCGGAAGTGTTTGGAGATTA+AGG | - | chr1.4:57233343-57233362 | MS.gene79253:intron | 40.0% |
| !! | TTGAGTGGGTTTTTGGATGA+GGG | + | chr1.4:57232853-57232872 | None:intergenic | 40.0% |
| !! | TTTGAGTGGGTTTTTGGATG+AGG | + | chr1.4:57232854-57232873 | None:intergenic | 40.0% |
| !!! | CATTTCTTCGGTTGTTTTGG+CGG | + | chr1.4:57232934-57232953 | None:intergenic | 40.0% |
| AAGAGAACAGATTACACCGG+TGG | - | chr1.4:57233856-57233875 | MS.gene79253:intron | 45.0% | |
| AATTGCACAGCATGAAGCAC+AGG | + | chr1.4:57233266-57233285 | None:intergenic | 45.0% | |
| AGGAGTTAGGGAAAGGGAAT+AGG | - | chr1.4:57233390-57233409 | MS.gene79253:intron | 45.0% | |
| ATAGATGCTTGGGAAAGCCA+TGG | - | chr1.4:57235777-57235796 | MS.gene79253:CDS | 45.0% | |
| CGCATGATAGGAAGCTTCTT+GGG | - | chr1.4:57233525-57233544 | MS.gene79253:intron | 45.0% | |
| CTAATGTTAAGACGGCGATG+GGG | - | chr1.4:57233294-57233313 | MS.gene79253:intron | 45.0% | |
| CTTTACGAGAACCTCTGAAC+CGG | + | chr1.4:57235544-57235563 | None:intergenic | 45.0% | |
| GAGGAAGATAGTGAGGAGTT+AGG | - | chr1.4:57233377-57233396 | MS.gene79253:intron | 45.0% | |
| GATAGTGAGGAGTTAGGGAA+AGG | - | chr1.4:57233383-57233402 | MS.gene79253:intron | 45.0% | |
| GATGTAACGGTATGTCAGGT+TGG | + | chr1.4:57235947-57235966 | None:intergenic | 45.0% | |
| GCTAATGTTAAGACGGCGAT+GGG | - | chr1.4:57233293-57233312 | MS.gene79253:intron | 45.0% | |
| GCTGCTGAAACTCAATTGCA+AGG | + | chr1.4:57235752-57235771 | None:intergenic | 45.0% | |
| GGAGTTAGGGAAAGGGAATA+GGG | - | chr1.4:57233391-57233410 | MS.gene79253:intron | 45.0% | |
| GTGTATCTGCAAGAATAGGG+TGG | - | chr1.4:57234011-57234030 | MS.gene79253:intron | 45.0% | |
| TAAACTGTTCGGGATTGACG+TGG | + | chr1.4:57236023-57236042 | None:intergenic | 45.0% | |
| TATGCCTCAGAAACTTCCAC+CGG | + | chr1.4:57233875-57233894 | None:intergenic | 45.0% | |
| TGCGATTTCGTTGCTGAAGA+GGG | - | chr1.4:57233940-57233959 | MS.gene79253:intron | 45.0% | |
| TTTACGAGAACCTCTGAACC+GGG | + | chr1.4:57235543-57235562 | None:intergenic | 45.0% | |
| ! | GCTCAAAGCATTCAGTGAGA+TGG | - | chr1.4:57232953-57232972 | MS.gene79253:CDS | 45.0% |
| ! | GGAGGGTGTAGTTTGATAGA+TGG | + | chr1.4:57234910-57234929 | None:intergenic | 45.0% |
| !! | AAGAGGCGCTAGAGAATCTT+CGG | - | chr1.4:57233324-57233343 | MS.gene79253:intron | 45.0% |
| !! | GGAAGTTTCTGAGGCATACT+CGG | - | chr1.4:57233877-57233896 | MS.gene79253:intron | 45.0% |
| !! | GGGGAAAGCGTTATGTAATC+AGG | - | chr1.4:57233778-57233797 | MS.gene79253:intron | 45.0% |
| !!! | AGGCTAATAGGGTTTTGGGT+AGG | - | chr1.4:57233204-57233223 | MS.gene79253:intron | 45.0% |
| !!! | GGTCCCAAACATTTTGGAGT+TGG | - | chr1.4:57234112-57234131 | MS.gene79253:intron | 45.0% |
| CCATGTGCAATTATGGGCTC+AGG | + | chr1.4:57235275-57235294 | None:intergenic | 50.0% | |
| CCTGAGCCCATAATTGCACA+TGG | - | chr1.4:57235272-57235291 | MS.gene79253:CDS | 50.0% | |
| CGGTTCAGAGGTTCTCGTAA+AGG | - | chr1.4:57235542-57235561 | MS.gene79253:CDS | 50.0% | |
| CTGCGATTTCGTTGCTGAAG+AGG | - | chr1.4:57233939-57233958 | MS.gene79253:intron | 50.0% | |
| CTGTTGAGGTTGCGCATGAT+AGG | - | chr1.4:57233513-57233532 | MS.gene79253:intron | 50.0% | |
| CTTCTTCTGCACTTGCTCCA+TGG | + | chr1.4:57235797-57235816 | None:intergenic | 50.0% | |
| GCGCATGATAGGAAGCTTCT+TGG | - | chr1.4:57233524-57233543 | MS.gene79253:intron | 50.0% | |
| GCTTACAGGTAAGGTGAAGC+AGG | - | chr1.4:57234042-57234061 | MS.gene79253:intron | 50.0% | |
| GGAAAGGGAAGAGCCTTCAT+AGG | + | chr1.4:57235891-57235910 | None:intergenic | 50.0% | |
| GGCTAATGTTAAGACGGCGA+TGG | - | chr1.4:57233292-57233311 | MS.gene79253:intron | 50.0% | |
| GGGAGATACGATGAAGCTGT+TGG | - | chr1.4:57233686-57233705 | MS.gene79253:intron | 50.0% | |
| GGTAGCCAAGGATATCATGG+AGG | - | chr1.4:57234207-57234226 | MS.gene79253:intron | 50.0% | |
| TACACCGGTGGAAGTTTCTG+AGG | - | chr1.4:57233868-57233887 | MS.gene79253:intron | 50.0% | |
| TGAAGCTTGATCGCGAAGGT+GGG | - | chr1.4:57233027-57233046 | MS.gene79253:CDS | 50.0% | |
| TGCGGTAGCCAAGGATATCA+TGG | - | chr1.4:57234204-57234223 | MS.gene79253:intron | 50.0% | |
| TGGGATGGAGGATCATGAGA+AGG | - | chr1.4:57233559-57233578 | MS.gene79253:intron | 50.0% | |
| ! | GGGGGCAGCATATTTAGAGT+TGG | - | chr1.4:57234153-57234172 | MS.gene79253:intron | 50.0% |
| ! | GGGTGGTTGTTGTTGCTTAC+AGG | - | chr1.4:57234028-57234047 | MS.gene79253:intron | 50.0% |
| !! | GGCGTTGGAGCAGAATGTTT+TGG | - | chr1.4:57233580-57233599 | MS.gene79253:intron | 50.0% |
| !! | TGTGTCAGGTTGGGAGTTAC+TGG | + | chr1.4:57235997-57236016 | None:intergenic | 50.0% |
| ACTGTTCGGGATTGACGTGG+CGG | + | chr1.4:57236020-57236039 | None:intergenic | 55.0% | |
| ATGTTAAGACGGCGATGGGG+AGG | - | chr1.4:57233297-57233316 | MS.gene79253:intron | 55.0% | |
| CCTCATTTGCAGAGACACCG+CGG | + | chr1.4:57235866-57235885 | None:intergenic | 55.0% | |
| CTCATTTGCAGAGACACCGC+GGG | + | chr1.4:57235865-57235884 | None:intergenic | 55.0% | |
| CTGAAGCTTGATCGCGAAGG+TGG | - | chr1.4:57233026-57233045 | MS.gene79253:CDS | 55.0% | |
| CTTGGTTGTTCCCGGTTCAG+AGG | - | chr1.4:57235530-57235549 | MS.gene79253:CDS | 55.0% | |
| GAAGCTTGATCGCGAAGGTG+GGG | - | chr1.4:57233028-57233047 | MS.gene79253:CDS | 55.0% | |
| GCAGATGTTTGCGGTAGCCA+AGG | - | chr1.4:57234195-57234214 | MS.gene79253:intron | 55.0% | |
| GTCAGCAGCGCAGATGTTTG+CGG | - | chr1.4:57234186-57234205 | MS.gene79253:intron | 55.0% | |
| TGGGAGTTACTGGATGCTGC+AGG | + | chr1.4:57235987-57236006 | None:intergenic | 55.0% | |
| ! | AACATCTGCGCTGCTGACTG+AGG | + | chr1.4:57234184-57234203 | None:intergenic | 55.0% |
| ! | GGAGGATCATGAGAAGGCGT+TGG | - | chr1.4:57233565-57233584 | MS.gene79253:intron | 55.0% |
| ! | GGTCTGAAGCTTGATCGCGA+AGG | - | chr1.4:57233023-57233042 | MS.gene79253:CDS | 55.0% |
| ACGTGGCGGTGTGTCAGGTT+GGG | + | chr1.4:57236006-57236025 | None:intergenic | 60.0% | |
| CCACAAGAGCAGCACTCGGA+GGG | - | chr1.4:57233986-57234005 | MS.gene79253:intron | 60.0% | |
| CCGCGGTGTCTCTGCAAATG+AGG | - | chr1.4:57235863-57235882 | MS.gene79253:CDS | 60.0% | |
| GATTGACGTGGCGGTGTGTC+AGG | + | chr1.4:57236011-57236030 | None:intergenic | 60.0% | |
| GCTCCCACAAGAGCAGCACT+CGG | - | chr1.4:57233982-57234001 | MS.gene79253:intron | 60.0% | |
| ! | CCTCCGAGTGCTGCTCTTGT+GGG | + | chr1.4:57233988-57234007 | None:intergenic | 60.0% |
| CCCACAAGAGCAGCACTCGG+AGG | - | chr1.4:57233985-57234004 | MS.gene79253:intron | 65.0% | |
| GACGTGGCGGTGTGTCAGGT+TGG | + | chr1.4:57236007-57236026 | None:intergenic | 65.0% | |
| GGCGATGGGGAGGAGAGAAG+AGG | - | chr1.4:57233307-57233326 | MS.gene79253:intron | 65.0% | |
| ! | CCCTCCGAGTGCTGCTCTTG+TGG | + | chr1.4:57233989-57234008 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 57232843 | 57236043 | 57232843 | ID=MS.gene79253 |
| chr1.4 | mRNA | 57232843 | 57236043 | 57232843 | ID=MS.gene79253.t1;Parent=MS.gene79253 |
| chr1.4 | exon | 57234581 | 57236043 | 57234581 | ID=MS.gene79253.t1.exon1;Parent=MS.gene79253.t1 |
| chr1.4 | CDS | 57234581 | 57236043 | 57234581 | ID=cds.MS.gene79253.t1;Parent=MS.gene79253.t1 |
| chr1.4 | exon | 57232843 | 57233143 | 57232843 | ID=MS.gene79253.t1.exon2;Parent=MS.gene79253.t1 |
| chr1.4 | CDS | 57232843 | 57233143 | 57232843 | ID=cds.MS.gene79253.t1;Parent=MS.gene79253.t1 |
| Gene Sequence |
| Protein sequence |
