Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80140.t1 | AFK38663.1 | 97.1 | 276 | 8 | 0 | 1 | 276 | 112 | 387 | 4.00E-145 | 524.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80140.t1 | Q6DYE4 | 56.7 | 277 | 116 | 2 | 1 | 276 | 129 | 402 | 1.7e-83 | 310.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80140.t1 | I3SEH1 | 97.1 | 276 | 8 | 0 | 1 | 276 | 112 | 387 | 2.9e-145 | 524.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049195 | MS.gene80140 | 0.804938 | 1.70E-49 | -1.69E-46 |
| MS.gene049351 | MS.gene80140 | 0.841851 | 3.70E-58 | -1.69E-46 |
| MS.gene049661 | MS.gene80140 | 0.800892 | 1.16E-48 | -1.69E-46 |
| MS.gene050076 | MS.gene80140 | 0.824994 | 5.97E-54 | -1.69E-46 |
| MS.gene050301 | MS.gene80140 | 0.841276 | 5.24E-58 | -1.69E-46 |
| MS.gene050397 | MS.gene80140 | 0.827656 | 1.39E-54 | -1.69E-46 |
| MS.gene050464 | MS.gene80140 | 0.81292 | 3.33E-51 | -1.69E-46 |
| MS.gene050529 | MS.gene80140 | 0.819285 | 1.26E-52 | -1.69E-46 |
| MS.gene050670 | MS.gene80140 | 0.826177 | 3.13E-54 | -1.69E-46 |
| MS.gene050783 | MS.gene80140 | 0.819907 | 9.08E-53 | -1.69E-46 |
| MS.gene05101 | MS.gene80140 | 0.846242 | 2.46E-59 | -1.69E-46 |
| MS.gene051387 | MS.gene80140 | 0.832402 | 9.65E-56 | -1.69E-46 |
| MS.gene051525 | MS.gene80140 | 0.831223 | 1.89E-55 | -1.69E-46 |
| MS.gene051582 | MS.gene80140 | 0.868073 | 8.56E-66 | -1.69E-46 |
| MS.gene051860 | MS.gene80140 | 0.807662 | 4.53E-50 | -1.69E-46 |
| MS.gene051877 | MS.gene80140 | 0.836252 | 1.04E-56 | -1.69E-46 |
| MS.gene052011 | MS.gene80140 | -0.821238 | 4.49E-53 | -1.69E-46 |
| MS.gene052078 | MS.gene80140 | 0.812029 | 5.21E-51 | -1.69E-46 |
| MS.gene052253 | MS.gene80140 | 0.813996 | 1.93E-51 | -1.69E-46 |
| MS.gene052310 | MS.gene80140 | 0.817484 | 3.22E-52 | -1.69E-46 |
| MS.gene052322 | MS.gene80140 | 0.81775 | 2.80E-52 | -1.69E-46 |
| MS.gene052326 | MS.gene80140 | 0.809039 | 2.30E-50 | -1.69E-46 |
| MS.gene052481 | MS.gene80140 | 0.811876 | 5.62E-51 | -1.69E-46 |
| MS.gene052485 | MS.gene80140 | 0.81973 | 9.96E-53 | -1.69E-46 |
| MS.gene053107 | MS.gene80140 | 0.808179 | 3.52E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene80140 | 0.838404 | 2.93E-57 | -1.69E-46 |
| MS.gene053971 | MS.gene80140 | 0.800665 | 1.30E-48 | -1.69E-46 |
| MS.gene054011 | MS.gene80140 | 0.805668 | 1.19E-49 | -1.69E-46 |
| MS.gene054473 | MS.gene80140 | 0.800211 | 1.60E-48 | -1.69E-46 |
| MS.gene054719 | MS.gene80140 | 0.811398 | 7.14E-51 | -1.69E-46 |
| MS.gene055116 | MS.gene80140 | 0.804593 | 2.01E-49 | -1.69E-46 |
| MS.gene055277 | MS.gene80140 | 0.849459 | 3.19E-60 | -1.69E-46 |
| MS.gene055390 | MS.gene80140 | 0.807795 | 4.25E-50 | -1.69E-46 |
| MS.gene055422 | MS.gene80140 | 0.818854 | 1.58E-52 | -1.69E-46 |
| MS.gene055428 | MS.gene80140 | 0.854021 | 1.62E-61 | -1.69E-46 |
| MS.gene05553 | MS.gene80140 | 0.821772 | 3.38E-53 | -1.69E-46 |
| MS.gene055564 | MS.gene80140 | 0.827246 | 1.74E-54 | -1.69E-46 |
| MS.gene055604 | MS.gene80140 | 0.802212 | 6.25E-49 | -1.69E-46 |
| MS.gene055971 | MS.gene80140 | 0.801883 | 7.30E-49 | -1.69E-46 |
| MS.gene056191 | MS.gene80140 | 0.829091 | 6.25E-55 | -1.69E-46 |
| MS.gene056407 | MS.gene80140 | 0.853927 | 1.73E-61 | -1.69E-46 |
| MS.gene056410 | MS.gene80140 | 0.833955 | 3.96E-56 | -1.69E-46 |
| MS.gene056452 | MS.gene80140 | 0.828231 | 1.01E-54 | -1.69E-46 |
| MS.gene056612 | MS.gene80140 | 0.823825 | 1.12E-53 | -1.69E-46 |
| MS.gene056796 | MS.gene80140 | 0.833954 | 3.96E-56 | -1.69E-46 |
| MS.gene056846 | MS.gene80140 | 0.825731 | 4.00E-54 | -1.69E-46 |
| MS.gene057011 | MS.gene80140 | 0.803521 | 3.35E-49 | -1.69E-46 |
| MS.gene05702 | MS.gene80140 | 0.832849 | 7.47E-56 | -1.69E-46 |
| MS.gene057121 | MS.gene80140 | 0.816539 | 5.25E-52 | -1.69E-46 |
| MS.gene057146 | MS.gene80140 | 0.810078 | 1.38E-50 | -1.69E-46 |
| MS.gene057245 | MS.gene80140 | 0.813521 | 2.45E-51 | -1.69E-46 |
| MS.gene057749 | MS.gene80140 | 0.805381 | 1.37E-49 | -1.69E-46 |
| MS.gene057823 | MS.gene80140 | 0.80505 | 1.61E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene80140 | 0.830902 | 2.26E-55 | -1.69E-46 |
| MS.gene05811 | MS.gene80140 | 0.833352 | 5.60E-56 | -1.69E-46 |
| MS.gene058142 | MS.gene80140 | 0.806305 | 8.78E-50 | -1.69E-46 |
| MS.gene058233 | MS.gene80140 | 0.847692 | 9.85E-60 | -1.69E-46 |
| MS.gene058660 | MS.gene80140 | 0.850705 | 1.43E-60 | -1.69E-46 |
| MS.gene05886 | MS.gene80140 | 0.824076 | 9.82E-54 | -1.69E-46 |
| MS.gene05907 | MS.gene80140 | 0.865392 | 6.10E-65 | -1.69E-46 |
| MS.gene059420 | MS.gene80140 | 0.808471 | 3.05E-50 | -1.69E-46 |
| MS.gene059536 | MS.gene80140 | 0.819664 | 1.03E-52 | -1.69E-46 |
| MS.gene059597 | MS.gene80140 | 0.806056 | 9.90E-50 | -1.69E-46 |
| MS.gene059676 | MS.gene80140 | 0.817788 | 2.75E-52 | -1.69E-46 |
| MS.gene059688 | MS.gene80140 | 0.812179 | 4.83E-51 | -1.69E-46 |
| MS.gene059692 | MS.gene80140 | 0.805906 | 1.06E-49 | -1.69E-46 |
| MS.gene059695 | MS.gene80140 | 0.809779 | 1.60E-50 | -1.69E-46 |
| MS.gene060403 | MS.gene80140 | 0.827356 | 1.64E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene80140 | 0.837259 | 5.77E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80140.t1 | MTR_5g053280 | 96.739 | 276 | 9 | 0 | 1 | 276 | 112 | 387 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80140.t1 | AT1G26090 | 56.679 | 277 | 116 | 2 | 1 | 276 | 129 | 402 | 1.11e-108 | 323 |
Find 79 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGCTGGTGCTCAAGTTTC+AGG | 0.173599 | 5.1:-42258576 | MS.gene80140:CDS |
| CTTTCGAATGATTCTGGTTT+TGG | 0.183397 | 5.1:+42258528 | None:intergenic |
| CAATTCTGCATTACGTTATT+GGG | 0.192768 | 5.1:-42258610 | MS.gene80140:CDS |
| TCAATTCTGCATTACGTTAT+TGG | 0.222888 | 5.1:-42258611 | MS.gene80140:CDS |
| TTTGCTCTTTCGAATGATTC+TGG | 0.223719 | 5.1:+42258522 | None:intergenic |
| TTCTCAAATCCACGGAAATT+TGG | 0.226348 | 5.1:-42258672 | MS.gene80140:CDS |
| GCTCAAGTTTCAGGCGCTTT+TGG | 0.247175 | 5.1:-42258567 | MS.gene80140:CDS |
| TTTACAGGCGTTCCAATTCT+AGG | 0.261130 | 5.1:-42257496 | MS.gene80140:intron |
| TTGACAGAGGTTGGATTGTT+AGG | 0.266572 | 5.1:+42258630 | None:intergenic |
| AAAACTCTGTTCCAATCTAT+TGG | 0.268032 | 5.1:+42258444 | None:intergenic |
| GAGGAGCTTGGCATCCTTCC+TGG | 0.292361 | 5.1:-42259279 | MS.gene80140:CDS |
| AGGAAGCTCCAATGGTAAAA+AGG | 0.303741 | 5.1:+42257341 | None:intergenic |
| AACTGATGATGTCATGTTAC+TGG | 0.311491 | 5.1:+42258365 | None:intergenic |
| GGACACTTTGGATCAAATTC+TGG | 0.320988 | 5.1:-42258871 | MS.gene80140:CDS |
| CTTGCACTTGAGAGGCTTGT+AGG | 0.332180 | 5.1:-42259234 | MS.gene80140:CDS |
| TTGGCTGAGAAAACTGAAAT+TGG | 0.346531 | 5.1:-42258993 | MS.gene80140:CDS |
| GACTTGTGGCTTGCTGCATT+GGG | 0.373977 | 5.1:-42257370 | MS.gene80140:CDS |
| ATTTGATGTCATAAGAAAAT+CGG | 0.374741 | 5.1:-42258340 | MS.gene80140:CDS |
| GGACTTGTGGCTTGCTGCAT+TGG | 0.382634 | 5.1:-42257371 | MS.gene80140:CDS |
| AGCAGCAGATCTTATTTCAA+TGG | 0.400613 | 5.1:-42258915 | MS.gene80140:CDS |
| AGGGGACCATACCCTAGAAT+TGG | 0.415957 | 5.1:+42257484 | None:intergenic |
| AAACTCTGTTCCAATCTATT+GGG | 0.422618 | 5.1:+42258445 | None:intergenic |
| GAAAACTGAAATTGGTAGAT+TGG | 0.441363 | 5.1:-42258985 | MS.gene80140:CDS |
| TCTTGTTGACTCTTTGAAGA+TGG | 0.447145 | 5.1:+42259198 | None:intergenic |
| CGAGGAAACCTTGAGAATCA+TGG | 0.447952 | 5.1:-42259139 | MS.gene80140:CDS |
| TGCCTTGAGTCATATTAAGC+TGG | 0.456940 | 5.1:+42259475 | None:intergenic |
| TGTGCCATATAATAGATTGT+TGG | 0.457104 | 5.1:-42259303 | MS.gene80140:intron |
| TTGCACTTGAGAGGCTTGTA+GGG | 0.463616 | 5.1:-42259233 | MS.gene80140:CDS |
| TTCAGAAACATGGGACACTT+TGG | 0.465064 | 5.1:-42258883 | MS.gene80140:CDS |
| CCATTGGAGCTTCCTTGAGC+CGG | 0.473501 | 5.1:-42257333 | MS.gene80140:CDS |
| GCAGCAGATCTTATTTCAAT+GGG | 0.474876 | 5.1:-42258914 | MS.gene80140:CDS |
| AATGCAGAATTGACAGAGGT+TGG | 0.475547 | 5.1:+42258621 | None:intergenic |
| TCGGTTACTCTCTTCATGCC+AGG | 0.479429 | 5.1:-42258321 | MS.gene80140:intron |
| TGGCTTCATCCACAAGTCTC+AGG | 0.482093 | 5.1:+42258949 | None:intergenic |
| TAGTAAATAGCCCAATAGAT+TGG | 0.489863 | 5.1:-42258455 | MS.gene80140:CDS |
| ATTTGGTTGCCTCCTTGTGA+TGG | 0.492410 | 5.1:-42258655 | MS.gene80140:CDS |
| TAGATTGTTGGAGAGGAGCT+TGG | 0.504080 | 5.1:-42259291 | MS.gene80140:CDS |
| GCTTGGCATCCTTCCTGGAA+TGG | 0.510438 | 5.1:-42259274 | MS.gene80140:CDS |
| TTCAGTGCTCAGCCGGCTCA+AGG | 0.511474 | 5.1:+42257321 | None:intergenic |
| TTACAGGCGTTCCAATTCTA+GGG | 0.520056 | 5.1:-42257495 | MS.gene80140:intron |
| TGAGATGAAAGCAGAAGGCA+AGG | 0.520256 | 5.1:+42258485 | None:intergenic |
| ATGACTCAAGGCACACTTGG+AGG | 0.523642 | 5.1:-42259465 | MS.gene80140:CDS |
| TCCTTCACTCCTGAGACTTG+TGG | 0.529663 | 5.1:-42258958 | MS.gene80140:CDS |
| AATTCTGCATTACGTTATTG+GGG | 0.532431 | 5.1:-42258609 | MS.gene80140:CDS |
| ATGATGTCATGTTACTGGAT+TGG | 0.543223 | 5.1:+42258370 | None:intergenic |
| TCTATTGGGCTATTTACTAA+CGG | 0.562951 | 5.1:+42258459 | None:intergenic |
| TGACTCAAGGCACACTTGGA+GGG | 0.565824 | 5.1:-42259464 | MS.gene80140:CDS |
| GAGGAAACCTTGAGAATCAT+GGG | 0.567213 | 5.1:-42259138 | MS.gene80140:CDS |
| CCGGCTCAAGGAAGCTCCAA+TGG | 0.567713 | 5.1:+42257333 | None:intergenic |
| GCCTTGAGTCATATTAAGCT+GGG | 0.571410 | 5.1:+42259476 | None:intergenic |
| GGAGGATGAGTTCAGAAACA+TGG | 0.573634 | 5.1:-42258893 | MS.gene80140:CDS |
| TCCACAAGTCTCAGGAGTGA+AGG | 0.574370 | 5.1:+42258957 | None:intergenic |
| AAATTTCCGTGGATTTGAGA+AGG | 0.575731 | 5.1:+42258674 | None:intergenic |
| GCTTCCACCCATGATTCTCA+AGG | 0.576164 | 5.1:+42259131 | None:intergenic |
| GACTCAAGGCACACTTGGAG+GGG | 0.579696 | 5.1:-42259463 | MS.gene80140:intron |
| GTAATTGTTCAGTGCTCAGC+CGG | 0.586721 | 5.1:+42257314 | None:intergenic |
| CATATAATAGATTGTTGGAG+AGG | 0.586904 | 5.1:-42259298 | MS.gene80140:intron |
| AATATGACTCAAGGCACACT+TGG | 0.591609 | 5.1:-42259468 | MS.gene80140:CDS |
| TTTAAAATATATCCGCACAT+TGG | 0.592995 | 5.1:-42259012 | MS.gene80140:CDS |
| ACACTGTGAATAAAGATGCT+AGG | 0.598622 | 5.1:-42258416 | MS.gene80140:CDS |
| GCCCAGCTTAATATGACTCA+AGG | 0.605769 | 5.1:-42259477 | MS.gene80140:CDS |
| CACTTTGGATCAAATTCTGG+AGG | 0.608227 | 5.1:-42258868 | MS.gene80140:intron |
| TTTGATGTAATAATATATGA+TGG | 0.612450 | 5.1:-42259171 | MS.gene80140:CDS |
| ATTCTGCATTACGTTATTGG+GGG | 0.613562 | 5.1:-42258608 | MS.gene80140:CDS |
| CTTCTGCCTTCTCAAATCCA+CGG | 0.614539 | 5.1:-42258680 | MS.gene80140:CDS |
| GCAGATCTTATTTCAATGGG+AGG | 0.614942 | 5.1:-42258911 | MS.gene80140:CDS |
| AGGAGGCAACCAAATTTCCG+TGG | 0.623402 | 5.1:+42258663 | None:intergenic |
| GGACTTGAGATGAAAGCAGA+AGG | 0.643751 | 5.1:+42258480 | None:intergenic |
| GAGGATGAGTTCAGAAACAT+GGG | 0.643942 | 5.1:-42258892 | MS.gene80140:CDS |
| ATTAGGTTAGGTAAAGAAGA+CGG | 0.655560 | 5.1:-42257392 | MS.gene80140:intron |
| GAGATGAAAGCAGAAGGCAA+GGG | 0.655584 | 5.1:+42258486 | None:intergenic |
| GATTGTTAGGATCCATCACA+AGG | 0.660209 | 5.1:+42258643 | None:intergenic |
| AGGTAAAGAAGACGGACTTG+TGG | 0.662174 | 5.1:-42257384 | MS.gene80140:CDS |
| TGGGTGGAAGCAGTAAAGCA+AGG | 0.674055 | 5.1:-42259119 | MS.gene80140:intron |
| AGATTGAGTCCATTCCAGGA+AGG | 0.677374 | 5.1:+42259265 | None:intergenic |
| GAAACCTTGAGAATCATGGG+TGG | 0.699723 | 5.1:-42259135 | MS.gene80140:CDS |
| ACGTAATGCAGAATTGACAG+AGG | 0.717466 | 5.1:+42258617 | None:intergenic |
| TGTTAGGATCCATCACAAGG+AGG | 0.756186 | 5.1:+42258646 | None:intergenic |
| ATATGATGGTGTCAGCAGCG+AGG | 0.762833 | 5.1:-42259157 | MS.gene80140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTATATAAATAAAA+TGG | - | chr5.1:42258776-42258795 | MS.gene80140:intron | 0.0% |
| !!! | AATATTTCTTTTGTTTTTAT+GGG | + | chr5.1:42258723-42258742 | None:intergenic | 10.0% |
| !!! | TAATATTTCTTTTGTTTTTA+TGG | + | chr5.1:42258724-42258743 | None:intergenic | 10.0% |
| !! | AAACAAAAGAAATATTACTA+AGG | - | chr5.1:42258727-42258746 | MS.gene80140:intron | 15.0% |
| !! | AGTTAAGAAATTTATTTATC+AGG | + | chr5.1:42258855-42258874 | None:intergenic | 15.0% |
| !! | TTTCTATCTATATTTATGAT+GGG | - | chr5.1:42257427-42257446 | MS.gene80140:intron | 15.0% |
| !! | TTTGATGTAATAATATATGA+TGG | - | chr5.1:42257667-42257686 | MS.gene80140:intron | 15.0% |
| !!! | ATATTTTATGAGAAATAAGA+TGG | - | chr5.1:42258652-42258671 | MS.gene80140:CDS | 15.0% |
| !!! | TTTTCATCAAATTTTTATCA+AGG | - | chr5.1:42257459-42257478 | MS.gene80140:intron | 15.0% |
| !!! | TTTTCTATCTATATTTATGA+TGG | - | chr5.1:42257426-42257445 | MS.gene80140:intron | 15.0% |
| !! | AAATATAAAATGCATGAGAA+AGG | + | chr5.1:42258588-42258607 | None:intergenic | 20.0% |
| !! | AATAAGATGGTTATTATCTT+TGG | - | chr5.1:42258665-42258684 | MS.gene80140:CDS | 20.0% |
| !! | AATCATTATAGAATATTTGG+TGG | + | chr5.1:42259419-42259438 | None:intergenic | 20.0% |
| !! | ACCAAATATTCTATAATGAT+TGG | - | chr5.1:42259418-42259437 | MS.gene80140:intron | 20.0% |
| !! | ATTTGATGTCATAAGAAAAT+CGG | - | chr5.1:42258498-42258517 | MS.gene80140:CDS | 20.0% |
| !! | CATATAATTCTCAAAATACT+AGG | + | chr5.1:42259291-42259310 | None:intergenic | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+CGG | + | chr5.1:42259048-42259067 | None:intergenic | 20.0% |
| ! | GCCAATCATTATAGAATATT+TGG | + | chr5.1:42259422-42259441 | None:intergenic | 25.0% |
| ! | TATAATGATTGGCAATGATT+AGG | - | chr5.1:42259429-42259448 | MS.gene80140:intron | 25.0% |
| ! | TTCAGTGCAATTATAAATGT+TGG | - | chr5.1:42259073-42259092 | MS.gene80140:intron | 25.0% |
| !! | TTTAAAATATATCCGCACAT+TGG | - | chr5.1:42257826-42257845 | MS.gene80140:intron | 25.0% |
| !!! | TTAACTTGCAAAATAGATGT+TGG | - | chr5.1:42258869-42258888 | MS.gene80140:CDS | 25.0% |
| AAAACTCTGTTCCAATCTAT+TGG | + | chr5.1:42258397-42258416 | None:intergenic | 30.0% | |
| AAACTCTGTTCCAATCTATT+GGG | + | chr5.1:42258396-42258415 | None:intergenic | 30.0% | |
| AATTCTGCATTACGTTATTG+GGG | - | chr5.1:42258229-42258248 | MS.gene80140:intron | 30.0% | |
| ATTAGGTTAGGTAAAGAAGA+CGG | - | chr5.1:42259446-42259465 | MS.gene80140:intron | 30.0% | |
| CAATTCTGCATTACGTTATT+GGG | - | chr5.1:42258228-42258247 | MS.gene80140:intron | 30.0% | |
| CATATAATAGATTGTTGGAG+AGG | - | chr5.1:42257540-42257559 | MS.gene80140:intron | 30.0% | |
| CCATGAAGAATATGGTAAAA+AGG | + | chr5.1:42258619-42258638 | None:intergenic | 30.0% | |
| CTCTCCAACAATCTATTATA+TGG | + | chr5.1:42257542-42257561 | None:intergenic | 30.0% | |
| GAAAACTGAAATTGGTAGAT+TGG | - | chr5.1:42257853-42257872 | MS.gene80140:intron | 30.0% | |
| GACTGTTATATATAGTGAGA+GGG | - | chr5.1:42259177-42259196 | MS.gene80140:CDS | 30.0% | |
| TAGTAAATAGCCCAATAGAT+TGG | - | chr5.1:42258383-42258402 | MS.gene80140:CDS | 30.0% | |
| TCAAACGAAAGAAAATGTCA+AGG | + | chr5.1:42257784-42257803 | None:intergenic | 30.0% | |
| TCAACCCTAATTTAGGAATA+CGG | - | chr5.1:42259390-42259409 | MS.gene80140:intron | 30.0% | |
| TCAATTCTGCATTACGTTAT+TGG | - | chr5.1:42258227-42258246 | MS.gene80140:intron | 30.0% | |
| TCTATTATATGGCACAAAAG+AGG | + | chr5.1:42257531-42257550 | None:intergenic | 30.0% | |
| TCTATTGGGCTATTTACTAA+CGG | + | chr5.1:42258382-42258401 | None:intergenic | 30.0% | |
| TGACTGTTATATATAGTGAG+AGG | - | chr5.1:42259176-42259195 | MS.gene80140:CDS | 30.0% | |
| TGTGCCATATAATAGATTGT+TGG | - | chr5.1:42257535-42257554 | MS.gene80140:intron | 30.0% | |
| TTTATCAAGGTTTCAAACTG+CGG | - | chr5.1:42257472-42257491 | MS.gene80140:intron | 30.0% | |
| ! | CCTTTTTACCATATTCTTCA+TGG | - | chr5.1:42258616-42258635 | MS.gene80140:CDS | 30.0% |
| ! | GTTTGATACTTCGATTTTGT+AGG | - | chr5.1:42257798-42257817 | MS.gene80140:intron | 30.0% |
| !! | TCTGCTGCTATTTATTTTCA+TGG | + | chr5.1:42257912-42257931 | None:intergenic | 30.0% |
| AAAAAGATTGAGTCCATTCC+AGG | + | chr5.1:42257580-42257599 | None:intergenic | 35.0% | |
| AAATTTCCGTGGATTTGAGA+AGG | + | chr5.1:42258167-42258186 | None:intergenic | 35.0% | |
| AATGAGTGCCATGAAGAATA+TGG | + | chr5.1:42258627-42258646 | None:intergenic | 35.0% | |
| ACACTGTGAATAAAGATGCT+AGG | - | chr5.1:42258422-42258441 | MS.gene80140:CDS | 35.0% | |
| ATGATGTCATGTTACTGGAT+TGG | + | chr5.1:42258471-42258490 | None:intergenic | 35.0% | |
| ATTCTGCATTACGTTATTGG+GGG | - | chr5.1:42258230-42258249 | MS.gene80140:intron | 35.0% | |
| CTTCTTCTAACTATGAAGCA+CGG | + | chr5.1:42259150-42259169 | None:intergenic | 35.0% | |
| GAGACCGTATTCCTAAATTA+GGG | + | chr5.1:42259397-42259416 | None:intergenic | 35.0% | |
| TACTAGGTTATCTCCCAATT+TGG | + | chr5.1:42259275-42259294 | None:intergenic | 35.0% | |
| TAGTTAGAAGCTATGAAGCA+TGG | - | chr5.1:42258987-42259006 | MS.gene80140:CDS | 35.0% | |
| TCTCAAATTATTAGCGGTGT+CGG | + | chr5.1:42259042-42259061 | None:intergenic | 35.0% | |
| TGATTATGTGTTGTCCAGAA+AGG | - | chr5.1:42258133-42258152 | MS.gene80140:intron | 35.0% | |
| TGATTGGCAATGATTAGGTT+AGG | - | chr5.1:42259434-42259453 | MS.gene80140:intron | 35.0% | |
| TGGCTACATAGATCAAATGA+CGG | + | chr5.1:42258044-42258063 | None:intergenic | 35.0% | |
| TGTTATATATAGTGAGAGGG+AGG | - | chr5.1:42259180-42259199 | MS.gene80140:CDS | 35.0% | |
| TTCTCAAATCCACGGAAATT+TGG | - | chr5.1:42258166-42258185 | MS.gene80140:intron | 35.0% | |
| TTGGCTGAGAAAACTGAAAT+TGG | - | chr5.1:42257845-42257864 | MS.gene80140:intron | 35.0% | |
| TTTGCTCTTTCGAATGATTC+TGG | + | chr5.1:42258319-42258338 | None:intergenic | 35.0% | |
| ! | AACTGATGATGTCATGTTAC+TGG | + | chr5.1:42258476-42258495 | None:intergenic | 35.0% |
| ! | AGATTGGAACAGAGTTTTAC+TGG | - | chr5.1:42258399-42258418 | MS.gene80140:CDS | 35.0% |
| ! | AGCAGCAGATCTTATTTCAA+TGG | - | chr5.1:42257923-42257942 | MS.gene80140:intron | 35.0% |
| ! | ATCTCTGATTTGTCAAAACC+TGG | + | chr5.1:42258538-42258557 | None:intergenic | 35.0% |
| ! | GCAGCAGATCTTATTTCAAT+GGG | - | chr5.1:42257924-42257943 | MS.gene80140:intron | 35.0% |
| ! | TGCTTGCTTCAGAAGTTTTA+GGG | + | chr5.1:42257338-42257357 | None:intergenic | 35.0% |
| !! | TCTTGTTGACTCTTTGAAGA+TGG | + | chr5.1:42257643-42257662 | None:intergenic | 35.0% |
| !! | TGGAATGGACTCAATCTTTT+TGG | - | chr5.1:42257579-42257598 | MS.gene80140:intron | 35.0% |
| !!! | CTTTCGAATGATTCTGGTTT+TGG | + | chr5.1:42258313-42258332 | None:intergenic | 35.0% |
| AATATGACTCAAGGCACACT+TGG | - | chr5.1:42257370-42257389 | MS.gene80140:CDS | 40.0% | |
| AATGCAGAATTGACAGAGGT+TGG | + | chr5.1:42258220-42258239 | None:intergenic | 40.0% | |
| ACGTAATGCAGAATTGACAG+AGG | + | chr5.1:42258224-42258243 | None:intergenic | 40.0% | |
| AGAATTGGAACGCCTGTAAA+TGG | + | chr5.1:42259342-42259361 | None:intergenic | 40.0% | |
| AGGAAGCTCCAATGGTAAAA+AGG | + | chr5.1:42259500-42259519 | None:intergenic | 40.0% | |
| CACTTTGGATCAAATTCTGG+AGG | - | chr5.1:42257970-42257989 | MS.gene80140:intron | 40.0% | |
| CCTACACAGTGGATAAAGAT+CGG | - | chr5.1:42258066-42258085 | MS.gene80140:intron | 40.0% | |
| CGATCTTTATCCACTGTGTA+GGG | + | chr5.1:42258068-42258087 | None:intergenic | 40.0% | |
| CGTGCTTCATAGTTAGAAGA+AGG | - | chr5.1:42259148-42259167 | MS.gene80140:CDS | 40.0% | |
| CTTGTCCAAGAAACAAGTCT+AGG | - | chr5.1:42259225-42259244 | MS.gene80140:CDS | 40.0% | |
| GAGGAAACCTTGAGAATCAT+GGG | - | chr5.1:42257700-42257719 | MS.gene80140:intron | 40.0% | |
| GAGGATGAGTTCAGAAACAT+GGG | - | chr5.1:42257946-42257965 | MS.gene80140:intron | 40.0% | |
| GATTGTTAGGATCCATCACA+AGG | + | chr5.1:42258198-42258217 | None:intergenic | 40.0% | |
| GCCTTGAGTCATATTAAGCT+GGG | + | chr5.1:42257365-42257384 | None:intergenic | 40.0% | |
| GGACACTTTGGATCAAATTC+TGG | - | chr5.1:42257967-42257986 | MS.gene80140:intron | 40.0% | |
| GGAGACCGTATTCCTAAATT+AGG | + | chr5.1:42259398-42259417 | None:intergenic | 40.0% | |
| GTCAGGTTCAACCCTAATTT+AGG | - | chr5.1:42259383-42259402 | MS.gene80140:intron | 40.0% | |
| TCCATCCTTTCTCCATTTAC+AGG | - | chr5.1:42259327-42259346 | MS.gene80140:intron | 40.0% | |
| TGCCTTGAGTCATATTAAGC+TGG | + | chr5.1:42257366-42257385 | None:intergenic | 40.0% | |
| TTACAGGCGTTCCAATTCTA+GGG | - | chr5.1:42259343-42259362 | MS.gene80140:intron | 40.0% | |
| TTAGGGTTGAACCTGACAAA+AGG | + | chr5.1:42259380-42259399 | None:intergenic | 40.0% | |
| TTCAGAAACATGGGACACTT+TGG | - | chr5.1:42257955-42257974 | MS.gene80140:intron | 40.0% | |
| TTGACAGAGGTTGGATTGTT+AGG | + | chr5.1:42258211-42258230 | None:intergenic | 40.0% | |
| TTTACAGGCGTTCCAATTCT+AGG | - | chr5.1:42259342-42259361 | MS.gene80140:intron | 40.0% | |
| ! | CTGCTTGCTTCAGAAGTTTT+AGG | + | chr5.1:42257339-42257358 | None:intergenic | 40.0% |
| ! | GAAGCAGTAAAGCAAGGTTT+TGG | - | chr5.1:42257725-42257744 | MS.gene80140:intron | 40.0% |
| ! | GCAGATCTTATTTCAATGGG+AGG | - | chr5.1:42257927-42257946 | MS.gene80140:intron | 40.0% |
| ! | GGAAGAAGCCTTTTTACCAT+TGG | - | chr5.1:42259489-42259508 | MS.gene80140:CDS | 40.0% |
| ! | GGTCAATGGTTAGCCAAATT+GGG | - | chr5.1:42259259-42259278 | MS.gene80140:CDS | 40.0% |
| ! | TTTTGGTACTTGCACTTGAG+AGG | - | chr5.1:42257596-42257615 | MS.gene80140:intron | 40.0% |
| !! | GCTTGCTTCAGAAGTTTTAG+GGG | + | chr5.1:42257337-42257356 | None:intergenic | 40.0% |
| AAGCTATGAAGCATGGACAC+CGG | - | chr5.1:42258994-42259013 | MS.gene80140:CDS | 45.0% | |
| AAGGTTTCAAACTGCGGTTG+TGG | - | chr5.1:42257478-42257497 | MS.gene80140:intron | 45.0% | |
| ACACAGTGGATAAAGATCGG+TGG | - | chr5.1:42258069-42258088 | MS.gene80140:intron | 45.0% | |
| AGAAGGCAGAAGATCCTTTC+TGG | + | chr5.1:42258150-42258169 | None:intergenic | 45.0% | |
| AGATTGAGTCCATTCCAGGA+AGG | + | chr5.1:42257576-42257595 | None:intergenic | 45.0% | |
| ATTTGGTTGCCTCCTTGTGA+TGG | - | chr5.1:42258183-42258202 | MS.gene80140:intron | 45.0% | |
| CCGATCTTTATCCACTGTGT+AGG | + | chr5.1:42258069-42258088 | None:intergenic | 45.0% | |
| CGAGGAAACCTTGAGAATCA+TGG | - | chr5.1:42257699-42257718 | MS.gene80140:intron | 45.0% | |
| CTTCTGCCTTCTCAAATCCA+CGG | - | chr5.1:42258158-42258177 | MS.gene80140:intron | 45.0% | |
| CTTTATCCACTGTGTAGGGT+TGG | + | chr5.1:42258064-42258083 | None:intergenic | 45.0% | |
| GAAACCTTGAGAATCATGGG+TGG | - | chr5.1:42257703-42257722 | MS.gene80140:intron | 45.0% | |
| GAACGCCTGTAAATGGAGAA+AGG | + | chr5.1:42259335-42259354 | None:intergenic | 45.0% | |
| GAGATGAAAGCAGAAGGCAA+GGG | + | chr5.1:42258355-42258374 | None:intergenic | 45.0% | |
| GCCCAGCTTAATATGACTCA+AGG | - | chr5.1:42257361-42257380 | MS.gene80140:CDS | 45.0% | |
| GCCTGTAAATGGAGAAAGGA+TGG | + | chr5.1:42259331-42259350 | None:intergenic | 45.0% | |
| GGACTTGAGATGAAAGCAGA+AGG | + | chr5.1:42258361-42258380 | None:intergenic | 45.0% | |
| GGAGGATGAGTTCAGAAACA+TGG | - | chr5.1:42257945-42257964 | MS.gene80140:intron | 45.0% | |
| GGTTGAACCTGACAAAAGGA+GGG | + | chr5.1:42259376-42259395 | None:intergenic | 45.0% | |
| GTTGAACCTGACAAAAGGAG+GGG | + | chr5.1:42259375-42259394 | None:intergenic | 45.0% | |
| TAGATTGTTGGAGAGGAGCT+TGG | - | chr5.1:42257547-42257566 | MS.gene80140:intron | 45.0% | |
| TATATAGTGAGAGGGAGGAG+AGG | - | chr5.1:42259185-42259204 | MS.gene80140:CDS | 45.0% | |
| TGAGATGAAAGCAGAAGGCA+AGG | + | chr5.1:42258356-42258375 | None:intergenic | 45.0% | |
| TGTCGATATATGTCGGACAC+CGG | - | chr5.1:42259101-42259120 | MS.gene80140:intron | 45.0% | |
| TGTTAGGATCCATCACAAGG+AGG | + | chr5.1:42258195-42258214 | None:intergenic | 45.0% | |
| TTGCACTTGAGAGGCTTGTA+GGG | - | chr5.1:42257605-42257624 | MS.gene80140:intron | 45.0% | |
| TTTGTAACAAACTAGCCGCG+TGG | - | chr5.1:42258959-42258978 | MS.gene80140:CDS | 45.0% | |
| ! | AGAGGCTTGTAGGGTTTTTG+GGG | - | chr5.1:42257614-42257633 | MS.gene80140:intron | 45.0% |
| ! | AGGTAAAGAAGACGGACTTG+TGG | - | chr5.1:42259454-42259473 | MS.gene80140:intron | 45.0% |
| ! | CAGTTTTCTCAGCCAATGTG+CGG | + | chr5.1:42257841-42257860 | None:intergenic | 45.0% |
| ! | GAGAGGCTTGTAGGGTTTTT+GGG | - | chr5.1:42257613-42257632 | MS.gene80140:intron | 45.0% |
| ! | GGGTCAATGGTTAGCCAAAT+TGG | - | chr5.1:42259258-42259277 | MS.gene80140:CDS | 45.0% |
| ! | GGTGTCGTGTCGATATATGT+CGG | - | chr5.1:42259094-42259113 | MS.gene80140:intron | 45.0% |
| ! | TGAGAGGCTTGTAGGGTTTT+TGG | - | chr5.1:42257612-42257631 | MS.gene80140:intron | 45.0% |
| !!! | TTCTGGTTTTGGTTGCTGAG+TGG | + | chr5.1:42258302-42258321 | None:intergenic | 45.0% |
| ACAAGTCTAGGTCGCCATCA+AGG | - | chr5.1:42259237-42259256 | MS.gene80140:CDS | 50.0% | |
| AGGAGGCAACCAAATTTCCG+TGG | + | chr5.1:42258178-42258197 | None:intergenic | 50.0% | |
| AGGGGACCATACCCTAGAAT+TGG | + | chr5.1:42259357-42259376 | None:intergenic | 50.0% | |
| ATCCTCTCACAGCGTAGCTA+AGG | + | chr5.1:42258930-42258949 | None:intergenic | 50.0% | |
| ATGACTCAAGGCACACTTGG+AGG | - | chr5.1:42257373-42257392 | MS.gene80140:CDS | 50.0% | |
| ATGTAGCCAACCCTACACAG+TGG | - | chr5.1:42258055-42258074 | MS.gene80140:intron | 50.0% | |
| CAAGCTGGTGCTCAAGTTTC+AGG | - | chr5.1:42258262-42258281 | MS.gene80140:intron | 50.0% | |
| CAAGTCTAGGTCGCCATCAA+GGG | - | chr5.1:42259238-42259257 | MS.gene80140:CDS | 50.0% | |
| CTTCTAACTAACCTGCCACG+CGG | + | chr5.1:42258977-42258996 | None:intergenic | 50.0% | |
| CTTGCACTTGAGAGGCTTGT+AGG | - | chr5.1:42257604-42257623 | MS.gene80140:intron | 50.0% | |
| GCTTCCACCCATGATTCTCA+AGG | + | chr5.1:42257710-42257729 | None:intergenic | 50.0% | |
| GGCTAACCATTGACCCTTGA+TGG | + | chr5.1:42259254-42259273 | None:intergenic | 50.0% | |
| GGGTTGAACCTGACAAAAGG+AGG | + | chr5.1:42259377-42259396 | None:intergenic | 50.0% | |
| GTCGATATATGTCGGACACC+GGG | - | chr5.1:42259102-42259121 | MS.gene80140:intron | 50.0% | |
| TAGCTACGCTGTGAGAGGAT+AGG | - | chr5.1:42258930-42258949 | MS.gene80140:CDS | 50.0% | |
| TCAAACTGCGGTTGTGGTTG+CGG | - | chr5.1:42257484-42257503 | MS.gene80140:intron | 50.0% | |
| TCCACAAGTCTCAGGAGTGA+AGG | + | chr5.1:42257884-42257903 | None:intergenic | 50.0% | |
| TCCTCTCACAGCGTAGCTAA+GGG | + | chr5.1:42258929-42258948 | None:intergenic | 50.0% | |
| TCCTTCACTCCTGAGACTTG+TGG | - | chr5.1:42257880-42257899 | MS.gene80140:intron | 50.0% | |
| TCGGTTACTCTCTTCATGCC+AGG | - | chr5.1:42258517-42258536 | MS.gene80140:CDS | 50.0% | |
| TGACTCAAGGCACACTTGGA+GGG | - | chr5.1:42257374-42257393 | MS.gene80140:CDS | 50.0% | |
| TGGCTTCATCCACAAGTCTC+AGG | + | chr5.1:42257892-42257911 | None:intergenic | 50.0% | |
| TGGGTGGAAGCAGTAAAGCA+AGG | - | chr5.1:42257719-42257738 | MS.gene80140:intron | 50.0% | |
| ! | ATATGATGGTGTCAGCAGCG+AGG | - | chr5.1:42257681-42257700 | MS.gene80140:intron | 50.0% |
| ! | GCTCAAGTTTCAGGCGCTTT+TGG | - | chr5.1:42258271-42258290 | MS.gene80140:intron | 50.0% |
| ! | GGCGACCTAGACTTGTTTCT+TGG | + | chr5.1:42259233-42259252 | None:intergenic | 50.0% |
| ! | TATGGTCCCCTCCTTTTGTC+AGG | - | chr5.1:42259366-42259385 | MS.gene80140:intron | 50.0% |
| !! | GACTTGTGGCTTGCTGCATT+GGG | - | chr5.1:42259468-42259487 | MS.gene80140:CDS | 50.0% |
| !! | GGCGTTCCAATTCTAGGGTA+TGG | - | chr5.1:42259348-42259367 | MS.gene80140:intron | 50.0% |
| ACCCTTAGCTACGCTGTGAG+AGG | - | chr5.1:42258925-42258944 | MS.gene80140:CDS | 55.0% | |
| AGGTCGCCATCAAGGGTCAA+TGG | - | chr5.1:42259245-42259264 | MS.gene80140:CDS | 55.0% | |
| ATCAGTGTCCGTGTCGTGTC+CGG | + | chr5.1:42259016-42259035 | None:intergenic | 55.0% | |
| CCATTGGAGCTTCCTTGAGC+CGG | - | chr5.1:42259505-42259524 | MS.gene80140:CDS | 55.0% | |
| GACTCAAGGCACACTTGGAG+GGG | - | chr5.1:42257375-42257394 | MS.gene80140:CDS | 55.0% | |
| GCACGGACACTCCTTCGATT+AGG | + | chr5.1:42259133-42259152 | None:intergenic | 55.0% | |
| GCTTGGCATCCTTCCTGGAA+TGG | - | chr5.1:42257564-42257583 | MS.gene80140:intron | 55.0% | |
| TAACAAACTAGCCGCGTGGC+AGG | - | chr5.1:42258963-42258982 | MS.gene80140:CDS | 55.0% | |
| TCCTTCGATTAGGCGTGTCC+CGG | + | chr5.1:42259123-42259142 | None:intergenic | 55.0% | |
| ! | TGCGGTTGTGGTTGCGGTTT+TGG | - | chr5.1:42257490-42257509 | MS.gene80140:intron | 55.0% |
| ! | TGGGGGTGTGCAATTCAAGC+TGG | - | chr5.1:42258247-42258266 | MS.gene80140:intron | 55.0% |
| !! | GGACTTGTGGCTTGCTGCAT+TGG | - | chr5.1:42259467-42259486 | MS.gene80140:CDS | 55.0% |
| ACCGGGACACGCCTAATCGA+AGG | - | chr5.1:42259119-42259138 | MS.gene80140:intron | 60.0% | |
| AGTGAGAGGGAGGAGAGGAG+AGG | - | chr5.1:42259190-42259209 | MS.gene80140:CDS | 60.0% | |
| CAAGGCACACTTGGAGGGGT+GGG | - | chr5.1:42257379-42257398 | MS.gene80140:CDS | 60.0% | |
| CATGGACACCGGACACGACA+CGG | - | chr5.1:42259005-42259024 | MS.gene80140:CDS | 60.0% | |
| CCGGCTCAAGGAAGCTCCAA+TGG | + | chr5.1:42259508-42259527 | None:intergenic | 60.0% | |
| GAGGAGCTTGGCATCCTTCC+TGG | - | chr5.1:42257559-42257578 | MS.gene80140:intron | 60.0% | |
| TCAAGGCACACTTGGAGGGG+TGG | - | chr5.1:42257378-42257397 | MS.gene80140:CDS | 60.0% | |
| GAGAGGGAGGAGAGGAGAGG+AGG | - | chr5.1:42259193-42259212 | MS.gene80140:CDS | 65.0% | |
| GGAGGAGAGGAGAGGAGGCT+TGG | - | chr5.1:42259198-42259217 | MS.gene80140:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 42257322 | 42259538 | 42257322 | ID=MS.gene80140 |
| chr5.1 | mRNA | 42257322 | 42259538 | 42257322 | ID=MS.gene80140.t1;Parent=MS.gene80140 |
| chr5.1 | exon | 42259464 | 42259538 | 42259464 | ID=MS.gene80140.t1.exon1;Parent=MS.gene80140.t1 |
| chr5.1 | CDS | 42259464 | 42259538 | 42259464 | ID=cds.MS.gene80140.t1;Parent=MS.gene80140.t1 |
| chr5.1 | exon | 42259120 | 42259310 | 42259120 | ID=MS.gene80140.t1.exon2;Parent=MS.gene80140.t1 |
| chr5.1 | CDS | 42259120 | 42259310 | 42259120 | ID=cds.MS.gene80140.t1;Parent=MS.gene80140.t1 |
| chr5.1 | exon | 42258869 | 42259040 | 42258869 | ID=MS.gene80140.t1.exon3;Parent=MS.gene80140.t1 |
| chr5.1 | CDS | 42258869 | 42259040 | 42258869 | ID=cds.MS.gene80140.t1;Parent=MS.gene80140.t1 |
| chr5.1 | exon | 42258322 | 42258709 | 42258322 | ID=MS.gene80140.t1.exon4;Parent=MS.gene80140.t1 |
| chr5.1 | CDS | 42258322 | 42258709 | 42258322 | ID=cds.MS.gene80140.t1;Parent=MS.gene80140.t1 |
| chr5.1 | exon | 42257496 | 42257511 | 42257496 | ID=MS.gene80140.t1.exon5;Parent=MS.gene80140.t1 |
| chr5.1 | CDS | 42257496 | 42257511 | 42257496 | ID=cds.MS.gene80140.t1;Parent=MS.gene80140.t1 |
| chr5.1 | exon | 42257322 | 42257409 | 42257322 | ID=MS.gene80140.t1.exon6;Parent=MS.gene80140.t1 |
| chr5.1 | CDS | 42257322 | 42257409 | 42257322 | ID=cds.MS.gene80140.t1;Parent=MS.gene80140.t1 |
| Gene Sequence |
| Protein sequence |
