Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82321.t1 | XP_003590760.1 | 98.1 | 671 | 13 | 0 | 1 | 671 | 1 | 671 | 0.00E+00 | 1298.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82321.t1 | Q9SS87 | 31.4 | 711 | 405 | 21 | 23 | 664 | 34 | 730 | 8.9e-82 | 306.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82321.t1 | E2FKJ6 | 98.1 | 671 | 13 | 0 | 1 | 671 | 1 | 671 | 0.0e+00 | 1298.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene82321 | 0.800323 | 1.52E-48 | -1.69E-46 |
| MS.gene049435 | MS.gene82321 | 0.805593 | 1.24E-49 | -1.69E-46 |
| MS.gene049452 | MS.gene82321 | 0.801002 | 1.11E-48 | -1.69E-46 |
| MS.gene049850 | MS.gene82321 | 0.821713 | 3.49E-53 | -1.69E-46 |
| MS.gene050137 | MS.gene82321 | 0.812042 | 5.17E-51 | -1.69E-46 |
| MS.gene050156 | MS.gene82321 | 0.824671 | 7.11E-54 | -1.69E-46 |
| MS.gene050442 | MS.gene82321 | 0.809815 | 1.57E-50 | -1.69E-46 |
| MS.gene050826 | MS.gene82321 | 0.853221 | 2.76E-61 | -1.69E-46 |
| MS.gene051190 | MS.gene82321 | 0.809965 | 1.46E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene82321 | 0.817778 | 2.76E-52 | -1.69E-46 |
| MS.gene051720 | MS.gene82321 | 0.806707 | 7.22E-50 | -1.69E-46 |
| MS.gene051800 | MS.gene82321 | 0.823714 | 1.19E-53 | -1.69E-46 |
| MS.gene052020 | MS.gene82321 | 0.808588 | 2.88E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene82321 | 0.802663 | 5.04E-49 | -1.69E-46 |
| MS.gene053147 | MS.gene82321 | 0.812843 | 3.46E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene82321 | 0.810313 | 1.23E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene82321 | 0.806095 | 9.71E-50 | -1.69E-46 |
| MS.gene053296 | MS.gene82321 | 0.814397 | 1.57E-51 | -1.69E-46 |
| MS.gene053641 | MS.gene82321 | 0.810128 | 1.34E-50 | -1.69E-46 |
| MS.gene053811 | MS.gene82321 | 0.800395 | 1.47E-48 | -1.69E-46 |
| MS.gene05414 | MS.gene82321 | 0.8005 | 1.40E-48 | -1.69E-46 |
| MS.gene05415 | MS.gene82321 | 0.808617 | 2.84E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene82321 | 0.816769 | 4.66E-52 | -1.69E-46 |
| MS.gene05423 | MS.gene82321 | 0.800585 | 1.35E-48 | -1.69E-46 |
| MS.gene054291 | MS.gene82321 | -0.803494 | 3.39E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene82321 | 0.826083 | 3.29E-54 | -1.69E-46 |
| MS.gene054468 | MS.gene82321 | 0.801888 | 7.28E-49 | -1.69E-46 |
| MS.gene054559 | MS.gene82321 | 0.81077 | 9.77E-51 | -1.69E-46 |
| MS.gene054581 | MS.gene82321 | 0.809688 | 1.67E-50 | -1.69E-46 |
| MS.gene05468 | MS.gene82321 | 0.807337 | 5.31E-50 | -1.69E-46 |
| MS.gene054775 | MS.gene82321 | 0.819318 | 1.24E-52 | -1.69E-46 |
| MS.gene054801 | MS.gene82321 | 0.805569 | 1.25E-49 | -1.69E-46 |
| MS.gene055227 | MS.gene82321 | 0.823429 | 1.39E-53 | -1.69E-46 |
| MS.gene055356 | MS.gene82321 | 0.815948 | 7.12E-52 | -1.69E-46 |
| MS.gene055357 | MS.gene82321 | 0.802362 | 5.82E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene82321 | 0.801557 | 8.51E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene82321 | 0.853664 | 2.06E-61 | -1.69E-46 |
| MS.gene05604 | MS.gene82321 | 0.817223 | 3.69E-52 | -1.69E-46 |
| MS.gene056173 | MS.gene82321 | 0.824683 | 7.07E-54 | -1.69E-46 |
| MS.gene057012 | MS.gene82321 | 0.804678 | 1.92E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene82321 | 0.800884 | 1.17E-48 | -1.69E-46 |
| MS.gene057915 | MS.gene82321 | 0.807804 | 4.23E-50 | -1.69E-46 |
| MS.gene058010 | MS.gene82321 | 0.806951 | 6.41E-50 | -1.69E-46 |
| MS.gene058829 | MS.gene82321 | 0.80592 | 1.06E-49 | -1.69E-46 |
| MS.gene059161 | MS.gene82321 | 0.813125 | 3.00E-51 | -1.69E-46 |
| MS.gene059439 | MS.gene82321 | 0.800121 | 1.67E-48 | -1.69E-46 |
| MS.gene059664 | MS.gene82321 | 0.807682 | 4.49E-50 | -1.69E-46 |
| MS.gene060137 | MS.gene82321 | -0.835249 | 1.87E-56 | -1.69E-46 |
| MS.gene060802 | MS.gene82321 | 0.822787 | 1.97E-53 | -1.69E-46 |
| MS.gene060803 | MS.gene82321 | 0.823033 | 1.72E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82321.t1 | MTR_1g074950 | 98.063 | 671 | 13 | 0 | 1 | 671 | 1 | 671 | 0.0 | 1352 |
| MS.gene82321.t1 | MTR_1g074990 | 59.581 | 668 | 262 | 6 | 9 | 671 | 5 | 669 | 0.0 | 818 |
| MS.gene82321.t1 | MTR_1g075030 | 58.769 | 650 | 261 | 6 | 18 | 663 | 17 | 663 | 0.0 | 770 |
| MS.gene82321.t1 | MTR_1g075095 | 59.077 | 650 | 259 | 6 | 18 | 663 | 17 | 663 | 0.0 | 769 |
| MS.gene82321.t1 | MTR_1g075230 | 55.988 | 668 | 286 | 6 | 1 | 664 | 1 | 664 | 0.0 | 737 |
| MS.gene82321.t1 | MTR_1g040360 | 38.117 | 669 | 389 | 11 | 20 | 670 | 24 | 685 | 3.68e-150 | 452 |
| MS.gene82321.t1 | MTR_7g032660 | 31.944 | 720 | 424 | 17 | 1 | 663 | 1 | 711 | 1.83e-106 | 339 |
| MS.gene82321.t1 | MTR_1g075180 | 33.383 | 677 | 390 | 18 | 13 | 667 | 3 | 640 | 8.76e-105 | 332 |
| MS.gene82321.t1 | MTR_1g075153 | 33.526 | 692 | 389 | 21 | 6 | 668 | 19 | 668 | 2.45e-103 | 329 |
| MS.gene82321.t1 | MTR_8g089660 | 32.378 | 698 | 403 | 20 | 23 | 662 | 17 | 703 | 4.44e-101 | 324 |
| MS.gene82321.t1 | MTR_3g075450 | 31.322 | 696 | 413 | 18 | 19 | 661 | 21 | 704 | 4.55e-99 | 319 |
| MS.gene82321.t1 | MTR_1g075170 | 32.738 | 672 | 386 | 22 | 21 | 662 | 31 | 666 | 2.00e-95 | 309 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82321.t1 | AT3G01680 | 31.364 | 711 | 405 | 21 | 23 | 664 | 34 | 730 | 2.96e-98 | 318 |
| MS.gene82321.t1 | AT3G01670 | 26.160 | 711 | 429 | 22 | 23 | 661 | 158 | 844 | 2.97e-59 | 214 |
| MS.gene82321.t1 | AT3G01670 | 26.160 | 711 | 429 | 22 | 23 | 661 | 134 | 820 | 3.47e-59 | 214 |
| MS.gene82321.t1 | AT1G67790 | 23.352 | 698 | 431 | 28 | 24 | 659 | 9 | 664 | 7.38e-35 | 141 |
Find 120 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCATCATCCATTGTAAA+TGG | 0.156346 | 1.3:+53401194 | None:intergenic |
| TCTGCATTTGCACTTGAATT+TGG | 0.183170 | 1.3:-53403859 | MS.gene82321:CDS |
| AAATTCCTGTTGATGTTTAC+TGG | 0.195806 | 1.3:-53403594 | MS.gene82321:CDS |
| AAAACCTCGTAAGTCGATTT+TGG | 0.196977 | 1.3:-53400474 | MS.gene82321:CDS |
| CACTTGAATTTGGTGAATTC+TGG | 0.203329 | 1.3:-53403849 | MS.gene82321:CDS |
| TTCCATTTGATCAAGTCTTA+TGG | 0.239151 | 1.3:-53401230 | MS.gene82321:CDS |
| AGTAAATTTGATCTAAAATT+TGG | 0.244179 | 1.3:+53404982 | None:intergenic |
| TGGTCATCAGACATGGTTAA+TGG | 0.245357 | 1.3:+53405002 | None:intergenic |
| CATTGAATTTATACTTGAAT+TGG | 0.266351 | 1.3:-53403677 | MS.gene82321:CDS |
| TTGTGTCATACCTATCATTA+AGG | 0.284079 | 1.3:+53403650 | None:intergenic |
| CTTGAAATTCCTATTGTTGC+TGG | 0.287322 | 1.3:-53400178 | MS.gene82321:CDS |
| CACAAAGGTTGTTCCTGCTT+TGG | 0.316333 | 1.3:-53403632 | MS.gene82321:CDS |
| TATCACTGAGCTTAATAGTT+TGG | 0.318395 | 1.3:-53403719 | MS.gene82321:CDS |
| ATGAACAATACAAGATTGTT+TGG | 0.318857 | 1.3:-53401448 | MS.gene82321:CDS |
| CAATGCAAATGCAAAACATT+AGG | 0.320284 | 1.3:-53400071 | None:intergenic |
| AATTGGATTACCTTAATGAT+AGG | 0.331280 | 1.3:-53403660 | MS.gene82321:CDS |
| CGAAAATTTACTTACCCATA+TGG | 0.346721 | 1.3:+53401109 | None:intergenic |
| AATGCAAATGCAAAACATTA+GGG | 0.352870 | 1.3:-53400070 | None:intergenic |
| TATCGAATTTCTTGCGTAGC+TGG | 0.357781 | 1.3:+53401399 | None:intergenic |
| CTCAGAAGAAATTGACTTCA+AGG | 0.363511 | 1.3:+53404704 | None:intergenic |
| TTTCAGCAAAGCCACAGATT+TGG | 0.367784 | 1.3:+53403792 | None:intergenic |
| GTAACAGTTTCTTAAGCTCT+TGG | 0.377322 | 1.3:+53403082 | None:intergenic |
| TGCTGCTATTGTTACTCAGT+TGG | 0.382885 | 1.3:-53403557 | MS.gene82321:CDS |
| GGTCATCAGACATGGTTAAT+GGG | 0.399280 | 1.3:+53405003 | None:intergenic |
| ATGTGAAAGCTTGTTCAGTA+TGG | 0.402535 | 1.3:+53403915 | None:intergenic |
| GTTCCTCAGTTGCTTTATGA+TGG | 0.403939 | 1.3:-53403006 | MS.gene82321:CDS |
| TCAAGTTCATTAATGAAGAA+TGG | 0.407316 | 1.3:-53401319 | MS.gene82321:CDS |
| ATGAAAATCTCCATGGTACT+AGG | 0.409436 | 1.3:+53400121 | None:intergenic |
| TTTCATCATCCATTGTAAAT+GGG | 0.417223 | 1.3:+53401195 | None:intergenic |
| CTGTGGCTGAATTTGAGAAA+TGG | 0.418335 | 1.3:-53400288 | MS.gene82321:CDS |
| GATCAAGTCTTATGGAATCA+AGG | 0.421741 | 1.3:-53401222 | MS.gene82321:CDS |
| TTAACCACAACATTTCCATA+TGG | 0.422661 | 1.3:-53401124 | MS.gene82321:CDS |
| GAATTCAGAAGGACAGGAAC+TGG | 0.428024 | 1.3:-53401169 | MS.gene82321:CDS |
| ATGGTCCAGTAAACATCAAC+AGG | 0.429508 | 1.3:+53403589 | None:intergenic |
| GGTAACTTTCCAGCAACAAT+AGG | 0.436825 | 1.3:+53400169 | None:intergenic |
| CAGCAACAATAGGAATTTCA+AGG | 0.438861 | 1.3:+53400179 | None:intergenic |
| TTCCATAAGACTTGATCAAA+TGG | 0.441990 | 1.3:+53401228 | None:intergenic |
| AGCACCACTGTTATTTCAGT+TGG | 0.443068 | 1.3:+53403054 | None:intergenic |
| CAAGTTCATTAATGAAGAAT+GGG | 0.444482 | 1.3:-53401318 | MS.gene82321:CDS |
| GGATTCCAATCGTCGAAGAA+TGG | 0.446974 | 1.3:-53401427 | MS.gene82321:CDS |
| TGCTTGCTCCAAGCTTACTT+TGG | 0.448220 | 1.3:+53404770 | None:intergenic |
| TTGTGTGCAATTTCCTCACT+TGG | 0.452426 | 1.3:+53403949 | None:intergenic |
| TCTCAATCTCACCAGCTGAT+AGG | 0.452782 | 1.3:+53405030 | None:intergenic |
| AACTGGATTGTATCTGTTGT+AGG | 0.459816 | 1.3:-53401152 | MS.gene82321:CDS |
| GTGAACTAAAATTCGAGATA+AGG | 0.465871 | 1.3:+53404736 | None:intergenic |
| TCGTTCCATTCTTCGACGAT+TGG | 0.466028 | 1.3:+53401422 | None:intergenic |
| GAATTGCTGCAGGCTTTGCT+AGG | 0.467942 | 1.3:+53403758 | None:intergenic |
| TGTGCAATTTCCTCACTTGG+TGG | 0.473616 | 1.3:+53403952 | None:intergenic |
| AAAGATGTTGTTATCAAGAA+GGG | 0.481066 | 1.3:-53400265 | MS.gene82321:CDS |
| TCCATGGTACTAGGACAATC+AGG | 0.486441 | 1.3:+53400130 | None:intergenic |
| TAACCACAACATTTCCATAT+GGG | 0.489037 | 1.3:-53401123 | MS.gene82321:intron |
| AAGCAAGAACTTTCCCACTA+TGG | 0.489618 | 1.3:-53403382 | MS.gene82321:CDS |
| ACAAGCTTTCACATTATGAC+TGG | 0.491657 | 1.3:-53403906 | MS.gene82321:CDS |
| GTTGGATCCATTCTTTGTCA+TGG | 0.491940 | 1.3:+53400590 | None:intergenic |
| TTGCATACTTAGTGAACTGT+TGG | 0.493419 | 1.3:+53400572 | None:intergenic |
| AATAGCAGCAATAGTGATGA+TGG | 0.497646 | 1.3:+53403570 | None:intergenic |
| AGCAACTGAGGAACACCCTT+GGG | 0.498957 | 1.3:+53403015 | None:intergenic |
| ACAGGGTACCAAAGTAAGCT+TGG | 0.502353 | 1.3:-53404778 | MS.gene82321:intron |
| CTTGAAGTCAATTTCTTCTG+AGG | 0.504447 | 1.3:-53404703 | MS.gene82321:intron |
| GAAAGATGTTGTTATCAAGA+AGG | 0.504611 | 1.3:-53400266 | MS.gene82321:CDS |
| CTTAAGAGTACCTTTGATGA+TGG | 0.504661 | 1.3:+53405058 | None:intergenic |
| AAATAAGAATTCAGAAGGAC+AGG | 0.505393 | 1.3:-53401175 | MS.gene82321:CDS |
| ACGGCGGCCATGACAAAGAA+TGG | 0.505835 | 1.3:-53400597 | MS.gene82321:CDS |
| CATTTGCATTGCTCTTGTTG+TGG | 0.511127 | 1.3:+53400083 | None:intergenic |
| TGAACTAAAATTCGAGATAA+GGG | 0.515629 | 1.3:+53404737 | None:intergenic |
| AAAGATACGAACCGTAGTCT+TGG | 0.515674 | 1.3:+53402978 | None:intergenic |
| CAGAATGTCGAAAACATAGC+TGG | 0.516066 | 1.3:-53401344 | MS.gene82321:CDS |
| TATTAAGCTCAGTGATAGCT+TGG | 0.519222 | 1.3:+53403725 | None:intergenic |
| CAAGGCTTTCCCATTTACAA+TGG | 0.524969 | 1.3:-53401204 | MS.gene82321:CDS |
| TCTGTTGTGTTGAGTGGTCA+TGG | 0.529738 | 1.3:-53400328 | MS.gene82321:CDS |
| TTTGTGGTGTTTAGTCCTCA+AGG | 0.535506 | 1.3:-53401275 | MS.gene82321:CDS |
| TTGTGTTGCACCTTTCCTTG+AGG | 0.539203 | 1.3:+53401260 | None:intergenic |
| TGTTTCTACTCTAGATGTCA+CGG | 0.542607 | 1.3:-53401519 | MS.gene82321:CDS |
| TCCTGATTGTCCTAGTACCA+TGG | 0.550611 | 1.3:-53400131 | MS.gene82321:CDS |
| ATGAGTGACACGAGCAACAC+TGG | 0.552524 | 1.3:+53400213 | None:intergenic |
| GTCAACATAGAAGAGTTCAA+TGG | 0.556338 | 1.3:+53400507 | None:intergenic |
| CATTGTTGACAGTGTTGTGC+AGG | 0.556795 | 1.3:-53404877 | MS.gene82321:intron |
| GCTGCAGGCTTTGCTAGGAT+CGG | 0.562793 | 1.3:+53403763 | None:intergenic |
| CAAGCTTTCACATTATGACT+GGG | 0.564097 | 1.3:-53403905 | MS.gene82321:CDS |
| CTTAAGACACTCCTATCAGC+TGG | 0.567003 | 1.3:-53405041 | MS.gene82321:CDS |
| CAACAGATGGTCCTTTGCTA+AGG | 0.567238 | 1.3:+53400344 | None:intergenic |
| GAAAATGTGCTTGTTATGCT+CGG | 0.568033 | 1.3:+53400624 | None:intergenic |
| AACTTCTTGTGTCACTACAT+CGG | 0.569484 | 1.3:+53400408 | None:intergenic |
| CAATGTGTGTTGAACGTGCA+AGG | 0.571029 | 1.3:+53404895 | None:intergenic |
| AAGCAACTGAGGAACACCCT+TGG | 0.576598 | 1.3:+53403014 | None:intergenic |
| TCATATGCAAGCTCCAAAGC+AGG | 0.578263 | 1.3:+53403619 | None:intergenic |
| TGATGAAATAAGAATTCAGA+AGG | 0.583273 | 1.3:-53401180 | MS.gene82321:CDS |
| TAAAATTTGGTCATCAGACA+TGG | 0.584340 | 1.3:+53404995 | None:intergenic |
| TTACCCATATGGAAATGTTG+TGG | 0.584500 | 1.3:+53401120 | None:intergenic |
| AAGAGTACCTTTGATGATGG+TGG | 0.585987 | 1.3:+53405061 | None:intergenic |
| TGTGTCACTGTGGACATGTG+TGG | 0.587756 | 1.3:+53404959 | None:intergenic |
| AAAGCCACAGATTTGGCAAG+TGG | 0.592499 | 1.3:+53403799 | None:intergenic |
| GTGCAAGGGTATTCTGAGCA+AGG | 0.592657 | 1.3:+53404910 | None:intergenic |
| TGACCACTCAACACAACAGA+TGG | 0.592856 | 1.3:+53400331 | None:intergenic |
| TGATGGTGCTACCAAGACTA+CGG | 0.600087 | 1.3:-53402989 | MS.gene82321:intron |
| CGCTCCAAAATCGACTTACG+AGG | 0.601393 | 1.3:+53400470 | None:intergenic |
| GGTGTTTAGTCCTCAAGGAA+AGG | 0.602732 | 1.3:-53401270 | MS.gene82321:CDS |
| ACGGTCTGTCGTCAACAGAT+AGG | 0.603134 | 1.3:-53403316 | MS.gene82321:intron |
| TGCAAGGGTATTCTGAGCAA+GGG | 0.608420 | 1.3:+53404911 | None:intergenic |
| GAGTAAGATGCCATGGTATG+TGG | 0.608793 | 1.3:-53401369 | MS.gene82321:CDS |
| GTCATGCAAGCCACCAAGTG+AGG | 0.613274 | 1.3:-53403962 | MS.gene82321:CDS |
| TGAACTCTTCTATGTTGACA+AGG | 0.614303 | 1.3:-53400503 | MS.gene82321:CDS |
| ATAGCTGATGAAAATCTCCA+TGG | 0.615023 | 1.3:+53400114 | None:intergenic |
| AAGCCACAGATTTGGCAAGT+GGG | 0.620286 | 1.3:+53403800 | None:intergenic |
| ACTATGGCCACCATCATCAA+AGG | 0.622601 | 1.3:-53405068 | MS.gene82321:CDS |
| AGACCCACTTGCCAAATCTG+TGG | 0.631402 | 1.3:-53403803 | MS.gene82321:CDS |
| AAACTTACGATTCAGTGATG+AGG | 0.634674 | 1.3:+53403530 | None:intergenic |
| ACATTCTGCACCACATACCA+TGG | 0.636446 | 1.3:+53401359 | None:intergenic |
| GGTTGGGCTCTCCTTAGCAA+AGG | 0.640640 | 1.3:-53400355 | MS.gene82321:CDS |
| TAGACTGAGGAAGCAGATCA+CGG | 0.645853 | 1.3:-53403335 | MS.gene82321:CDS |
| GGACCATCTGTTGTGTTGAG+TGG | 0.654679 | 1.3:-53400334 | MS.gene82321:CDS |
| TCTGCTTCCTCAGTCTACTG+AGG | 0.663997 | 1.3:+53403341 | None:intergenic |
| TAATGATAGGTATGACACAA+AGG | 0.667392 | 1.3:-53403647 | MS.gene82321:CDS |
| TACAACAATTCTCAAAACTG+TGG | 0.669361 | 1.3:-53400305 | MS.gene82321:CDS |
| AATGTGTGTTGAACGTGCAA+GGG | 0.673789 | 1.3:+53404896 | None:intergenic |
| GCACCATCATAAAGCAACTG+AGG | 0.688596 | 1.3:+53403003 | None:intergenic |
| AACTCCAACTGAAATAACAG+TGG | 0.694056 | 1.3:-53403058 | MS.gene82321:CDS |
| ACATCATCCTCAGTAGACTG+AGG | 0.697742 | 1.3:-53403348 | MS.gene82321:CDS |
| ATTGACTTCAAGGTGCACAG+TGG | 0.759523 | 1.3:+53404714 | None:intergenic |
| TTCTACTCTAGATGTCACGG+AGG | 0.776640 | 1.3:-53401516 | MS.gene82321:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACATAAAAAAAAATCATA+CGG | - | chr1.3:53402816-53402835 | MS.gene82321:intron | 10.0% |
| !! | ATAATAAATAAACAAAGTAA+AGG | + | chr1.3:53401925-53401944 | None:intergenic | 10.0% |
| !! | TTTAATTAAAAAGTAATATG+TGG | - | chr1.3:53402974-53402993 | MS.gene82321:intron | 10.0% |
| !!! | AAATTTCTAATATTTTTCTT+TGG | + | chr1.3:53402487-53402506 | None:intergenic | 10.0% |
| !!! | TTAAAGGATATTTAATTTAA+AGG | + | chr1.3:53400317-53400336 | None:intergenic | 10.0% |
| !! | AATAGATACTTAAAAAGAAA+CGG | - | chr1.3:53400836-53400855 | MS.gene82321:intron | 15.0% |
| !! | AATATAAATTAATGCTAATG+TGG | - | chr1.3:53401999-53402018 | MS.gene82321:intron | 15.0% |
| !! | ACAAATTAATCAAAATTAAG+AGG | + | chr1.3:53403542-53403561 | None:intergenic | 15.0% |
| !! | AGAAAAATATTAGAAATTTG+TGG | - | chr1.3:53402488-53402507 | MS.gene82321:intron | 15.0% |
| !! | ATAAATTCTAATGAAATTGA+TGG | - | chr1.3:53403276-53403295 | MS.gene82321:intron | 15.0% |
| !! | TACATATATTATTTCAGATA+CGG | - | chr1.3:53402022-53402041 | MS.gene82321:intron | 15.0% |
| !! | TAGAAATTAACATAATAAAG+TGG | + | chr1.3:53400938-53400957 | None:intergenic | 15.0% |
| !! | TCATAACTATTATGAATTAA+AGG | + | chr1.3:53400333-53400352 | None:intergenic | 15.0% |
| !!! | AAAATTTGTTTTAAACATGT+AGG | + | chr1.3:53403184-53403203 | None:intergenic | 15.0% |
| !!! | AGTAAATTTGATCTAAAATT+TGG | + | chr1.3:53400158-53400177 | None:intergenic | 15.0% |
| !!! | TGCTTTTAAATATTTTTTGT+TGG | + | chr1.3:53402910-53402929 | None:intergenic | 15.0% |
| !!! | TTAACTCATATTAGTTTAAT+TGG | + | chr1.3:53401063-53401082 | None:intergenic | 15.0% |
| !!! | TTACAATCATATTTTGATTT+TGG | - | chr1.3:53404304-53404323 | MS.gene82321:intron | 15.0% |
| !! | AAGTAATCAAGTTAAAAATC+TGG | - | chr1.3:53403092-53403111 | MS.gene82321:CDS | 20.0% |
| !! | CATTGAATTTATACTTGAAT+TGG | - | chr1.3:53401460-53401479 | MS.gene82321:CDS | 20.0% |
| !! | CGAGATAAATATGAAAAAAA+GGG | - | chr1.3:53403419-53403438 | MS.gene82321:intron | 20.0% |
| !! | GAAATTATTACTATACGAAA+AGG | - | chr1.3:53403114-53403133 | MS.gene82321:intron | 20.0% |
| !! | TGAATTCAACAAACTTTAAA+TGG | + | chr1.3:53402845-53402864 | None:intergenic | 20.0% |
| !! | TTTCATGAAATTTACATGTT+TGG | + | chr1.3:53404184-53404203 | None:intergenic | 20.0% |
| !!! | AAGAAAAGTTGATATCAATT+TGG | - | chr1.3:53402660-53402679 | MS.gene82321:intron | 20.0% |
| !!! | AATAGTTATGAATTTTGACA+GGG | - | chr1.3:53400342-53400361 | MS.gene82321:CDS | 20.0% |
| !!! | CCTTTTTTTCATATTTATCT+CGG | + | chr1.3:53403421-53403440 | None:intergenic | 20.0% |
| !!! | GATTTTTAACTTGATTACTT+TGG | + | chr1.3:53403092-53403111 | None:intergenic | 20.0% |
| !!! | TAATAGTTATGAATTTTGAC+AGG | - | chr1.3:53400341-53400360 | MS.gene82321:CDS | 20.0% |
| !!! | TATTATTAGTGTTTTGTTGA+TGG | - | chr1.3:53403475-53403494 | MS.gene82321:intron | 20.0% |
| ! | AAACTTAAACATCATACACA+TGG | - | chr1.3:53400520-53400539 | MS.gene82321:CDS | 25.0% |
| ! | AAAGATGTTGTTATCAAGAA+GGG | - | chr1.3:53404872-53404891 | MS.gene82321:intron | 25.0% |
| ! | AATTGGATTACCTTAATGAT+AGG | - | chr1.3:53401477-53401496 | MS.gene82321:CDS | 25.0% |
| ! | ATGAACAATACAAGATTGTT+TGG | - | chr1.3:53403689-53403708 | MS.gene82321:CDS | 25.0% |
| ! | ATTTCATCATCCATTGTAAA+TGG | + | chr1.3:53403946-53403965 | None:intergenic | 25.0% |
| ! | CAAGTTCATTAATGAAGAAT+GGG | - | chr1.3:53403819-53403838 | MS.gene82321:CDS | 25.0% |
| ! | CCGAGATAAATATGAAAAAA+AGG | - | chr1.3:53403418-53403437 | MS.gene82321:intron | 25.0% |
| ! | TCAAGTTCATTAATGAAGAA+TGG | - | chr1.3:53403818-53403837 | MS.gene82321:CDS | 25.0% |
| ! | TGAACTAAAATTCGAGATAA+GGG | + | chr1.3:53400403-53400422 | None:intergenic | 25.0% |
| ! | TGATGAAATAAGAATTCAGA+AGG | - | chr1.3:53403957-53403976 | MS.gene82321:CDS | 25.0% |
| ! | TTACAAAAATGAAACTGGTT+GGG | - | chr1.3:53404766-53404785 | MS.gene82321:CDS | 25.0% |
| ! | TTTCATCATCCATTGTAAAT+GGG | + | chr1.3:53403945-53403964 | None:intergenic | 25.0% |
| !! | GCAAGAAATTCGATATTTTA+AGG | - | chr1.3:53403746-53403765 | MS.gene82321:CDS | 25.0% |
| !! | TAATTTACGAAAAGTATGTG+TGG | + | chr1.3:53403160-53403179 | None:intergenic | 25.0% |
| !! | TTTTTCATATTTATCTCGGT+TGG | + | chr1.3:53403417-53403436 | None:intergenic | 25.0% |
| !!! | TGTGTATGATGTTTAAGTTT+TGG | + | chr1.3:53400520-53400539 | None:intergenic | 25.0% |
| AAAATGAGTACAACACTTTG+TGG | - | chr1.3:53402257-53402276 | MS.gene82321:intron | 30.0% | |
| AAATAAGAATTCAGAAGGAC+AGG | - | chr1.3:53403962-53403981 | MS.gene82321:CDS | 30.0% | |
| AAATTCCTGTTGATGTTTAC+TGG | - | chr1.3:53401543-53401562 | MS.gene82321:CDS | 30.0% | |
| AGAAACACGTGTCATAATAA+TGG | - | chr1.3:53402548-53402567 | MS.gene82321:intron | 30.0% | |
| AGTATGATGTTACAGTTGTA+AGG | + | chr1.3:53401874-53401893 | None:intergenic | 30.0% | |
| ATTATTATGACACGTGTTTC+TGG | + | chr1.3:53402549-53402568 | None:intergenic | 30.0% | |
| CAAAAAGAAGTCTATGTTTG+TGG | - | chr1.3:53403846-53403865 | MS.gene82321:CDS | 30.0% | |
| CAATGCAAATGCAAAACATT+AGG | - | chr1.3:53405066-53405085 | MS.gene82321:CDS | 30.0% | |
| CGAAAATTTACTTACCCATA+TGG | + | chr1.3:53404031-53404050 | None:intergenic | 30.0% | |
| CTGTCTTACAAAAATGAAAC+TGG | - | chr1.3:53404761-53404780 | MS.gene82321:CDS | 30.0% | |
| CTTACAAAAATGAAACTGGT+TGG | - | chr1.3:53404765-53404784 | MS.gene82321:CDS | 30.0% | |
| GAAACACGTGTCATAATAAT+GGG | - | chr1.3:53402549-53402568 | MS.gene82321:intron | 30.0% | |
| GAAAGATGTTGTTATCAAGA+AGG | - | chr1.3:53404871-53404890 | MS.gene82321:intron | 30.0% | |
| GTAAATTTCTCGATCTCTAA+CGG | - | chr1.3:53401847-53401866 | MS.gene82321:intron | 30.0% | |
| GTGAACTAAAATTCGAGATA+AGG | + | chr1.3:53400404-53400423 | None:intergenic | 30.0% | |
| TAAAATTTGGTCATCAGACA+TGG | + | chr1.3:53400145-53400164 | None:intergenic | 30.0% | |
| TAAATAGGCAAGAAGAGAAA+AGG | + | chr1.3:53403331-53403350 | None:intergenic | 30.0% | |
| TAACCACAACATTTCCATAT+GGG | - | chr1.3:53404014-53404033 | MS.gene82321:intron | 30.0% | |
| TAATGATAGGTATGACACAA+AGG | - | chr1.3:53401490-53401509 | MS.gene82321:CDS | 30.0% | |
| TACAACAATTCTCAAAACTG+TGG | - | chr1.3:53404832-53404851 | MS.gene82321:intron | 30.0% | |
| TATCACTGAGCTTAATAGTT+TGG | - | chr1.3:53401418-53401437 | MS.gene82321:CDS | 30.0% | |
| TTAACCACAACATTTCCATA+TGG | - | chr1.3:53404013-53404032 | MS.gene82321:intron | 30.0% | |
| TTCCATAAGACTTGATCAAA+TGG | + | chr1.3:53403912-53403931 | None:intergenic | 30.0% | |
| TTCCATTTGATCAAGTCTTA+TGG | - | chr1.3:53403907-53403926 | MS.gene82321:CDS | 30.0% | |
| TTGTGTCATACCTATCATTA+AGG | + | chr1.3:53401490-53401509 | None:intergenic | 30.0% | |
| ! | AACAAGCACATTTTCTTCTA+CGG | - | chr1.3:53404521-53404540 | MS.gene82321:intron | 30.0% |
| ! | TGTAAAGACCGTTGAATTTT+GGG | - | chr1.3:53404090-53404109 | MS.gene82321:intron | 30.0% |
| ! | TGTTAGCTTAATGCTTAGAA+TGG | + | chr1.3:53403513-53403532 | None:intergenic | 30.0% |
| !! | ATCGGTTGTTTTGTGAATTT+TGG | + | chr1.3:53404714-53404733 | None:intergenic | 30.0% |
| !! | ATTAATTTGTTAAACCGTGC+AGG | - | chr1.3:53403552-53403571 | MS.gene82321:CDS | 30.0% |
| !! | TGATTACTTTGGTGACTTTT+TGG | + | chr1.3:53403081-53403100 | None:intergenic | 30.0% |
| AAACTTACGATTCAGTGATG+AGG | + | chr1.3:53401610-53401629 | None:intergenic | 35.0% | |
| AACATTAATGTCAACCTGCA+CGG | + | chr1.3:53403569-53403588 | None:intergenic | 35.0% | |
| AACTCCAACTGAAATAACAG+TGG | - | chr1.3:53402079-53402098 | MS.gene82321:intron | 35.0% | |
| AACTGGATTGTATCTGTTGT+AGG | - | chr1.3:53403985-53404004 | MS.gene82321:intron | 35.0% | |
| AATAGCAGCAATAGTGATGA+TGG | + | chr1.3:53401570-53401589 | None:intergenic | 35.0% | |
| ACAAGCTTTCACATTATGAC+TGG | - | chr1.3:53401231-53401250 | MS.gene82321:CDS | 35.0% | |
| ATAGCTGATGAAAATCTCCA+TGG | + | chr1.3:53405026-53405045 | None:intergenic | 35.0% | |
| ATGAAAATCTCCATGGTACT+AGG | + | chr1.3:53405019-53405038 | None:intergenic | 35.0% | |
| CAAGCTTTCACATTATGACT+GGG | - | chr1.3:53401232-53401251 | MS.gene82321:CDS | 35.0% | |
| CAGCAACAATAGGAATTTCA+AGG | + | chr1.3:53404961-53404980 | None:intergenic | 35.0% | |
| CTTGAAATTCCTATTGTTGC+TGG | - | chr1.3:53404959-53404978 | MS.gene82321:CDS | 35.0% | |
| CTTGAAGTCAATTTCTTCTG+AGG | - | chr1.3:53400434-53400453 | MS.gene82321:CDS | 35.0% | |
| GAAAAGGTAACTTCTATGCA+AGG | + | chr1.3:53403315-53403334 | None:intergenic | 35.0% | |
| GCTTCTCTCTTTAAATCTCA+CGG | - | chr1.3:53404131-53404150 | MS.gene82321:intron | 35.0% | |
| GTAACAGTTTCTTAAGCTCT+TGG | + | chr1.3:53402058-53402077 | None:intergenic | 35.0% | |
| GTCAACATAGAAGAGTTCAA+TGG | + | chr1.3:53404633-53404652 | None:intergenic | 35.0% | |
| GTGTATTATGGAGTTAGCAA+CGG | + | chr1.3:53403059-53403078 | None:intergenic | 35.0% | |
| TATTAAGCTCAGTGATAGCT+TGG | + | chr1.3:53401415-53401434 | None:intergenic | 35.0% | |
| TCTGCATTTGCACTTGAATT+TGG | - | chr1.3:53401278-53401297 | MS.gene82321:CDS | 35.0% | |
| TGAACTCTTCTATGTTGACA+AGG | - | chr1.3:53404634-53404653 | MS.gene82321:intron | 35.0% | |
| TTACAACTTCAGCAGATAGA+CGG | - | chr1.3:53404157-53404176 | MS.gene82321:intron | 35.0% | |
| TTACCCATATGGAAATGTTG+TGG | + | chr1.3:53404020-53404039 | None:intergenic | 35.0% | |
| TTGCATACTTAGTGAACTGT+TGG | + | chr1.3:53404568-53404587 | None:intergenic | 35.0% | |
| ! | AACTTCTTGTGTCACTACAT+CGG | + | chr1.3:53404732-53404751 | None:intergenic | 35.0% |
| ! | ATGTGAAAGCTTGTTCAGTA+TGG | + | chr1.3:53401225-53401244 | None:intergenic | 35.0% |
| ! | CACTTGAATTTGGTGAATTC+TGG | - | chr1.3:53401288-53401307 | MS.gene82321:CDS | 35.0% |
| ! | CTCAGAAGAAATTGACTTCA+AGG | + | chr1.3:53400436-53400455 | None:intergenic | 35.0% |
| ! | GATCAAGTCTTATGGAATCA+AGG | - | chr1.3:53403915-53403934 | MS.gene82321:CDS | 35.0% |
| ! | GGGTAAGTAAATTTTCGACT+TGG | - | chr1.3:53404034-53404053 | MS.gene82321:intron | 35.0% |
| ! | GTGTAAAGACCGTTGAATTT+TGG | - | chr1.3:53404089-53404108 | MS.gene82321:intron | 35.0% |
| ! | GTTGATCTTTTGACCATAGT+GGG | + | chr1.3:53401771-53401790 | None:intergenic | 35.0% |
| ! | TCAGGACATTTTATAGTCTC+AGG | + | chr1.3:53404992-53405011 | None:intergenic | 35.0% |
| ! | TCGTTTCTGATTTTTCCCAA+GGG | - | chr1.3:53402107-53402126 | MS.gene82321:intron | 35.0% |
| ! | TGTTGATCTTTTGACCATAG+TGG | + | chr1.3:53401772-53401791 | None:intergenic | 35.0% |
| ! | TGTTTCTACTCTAGATGTCA+CGG | - | chr1.3:53403618-53403637 | MS.gene82321:CDS | 35.0% |
| ! | TTCGTTTCTGATTTTTCCCA+AGG | - | chr1.3:53402106-53402125 | MS.gene82321:intron | 35.0% |
| !! | AAAACCTCGTAAGTCGATTT+TGG | - | chr1.3:53404663-53404682 | MS.gene82321:intron | 35.0% |
| !! | AAAGGTGTTTGAATCCTCAT+CGG | + | chr1.3:53401907-53401926 | None:intergenic | 35.0% |
| !! | CATCAAATTTTGTGTCACTG+TGG | + | chr1.3:53400191-53400210 | None:intergenic | 35.0% |
| !! | CTTAAGAGTACCTTTGATGA+TGG | + | chr1.3:53400082-53400101 | None:intergenic | 35.0% |
| !! | GAAAATGTGCTTGTTATGCT+CGG | + | chr1.3:53404516-53404535 | None:intergenic | 35.0% |
| !! | GGTGACTTTTTGGTGTATTA+TGG | + | chr1.3:53403071-53403090 | None:intergenic | 35.0% |
| !! | TTTTAAGGAGTAAGATGCCA+TGG | - | chr1.3:53403761-53403780 | MS.gene82321:CDS | 35.0% |
| AAAGATACGAACCGTAGTCT+TGG | + | chr1.3:53402162-53402181 | None:intergenic | 40.0% | |
| AAGCAAGAACTTTCCCACTA+TGG | - | chr1.3:53401755-53401774 | MS.gene82321:intron | 40.0% | |
| AATGTGTGTTGAACGTGCAA+GGG | + | chr1.3:53400244-53400263 | None:intergenic | 40.0% | |
| ATGGTCCAGTAAACATCAAC+AGG | + | chr1.3:53401551-53401570 | None:intergenic | 40.0% | |
| CAAGGCTTTCCCATTTACAA+TGG | - | chr1.3:53403933-53403952 | MS.gene82321:CDS | 40.0% | |
| CAGAATGTCGAAAACATAGC+TGG | - | chr1.3:53403793-53403812 | MS.gene82321:CDS | 40.0% | |
| CATTTGCATTGCTCTTGTTG+TGG | + | chr1.3:53405057-53405076 | None:intergenic | 40.0% | |
| CTGTGGCTGAATTTGAGAAA+TGG | - | chr1.3:53404849-53404868 | MS.gene82321:intron | 40.0% | |
| GCTTCTCTCCCAAAATTCAA+CGG | + | chr1.3:53404101-53404120 | None:intergenic | 40.0% | |
| GGTAACTTTCCAGCAACAAT+AGG | + | chr1.3:53404971-53404990 | None:intergenic | 40.0% | |
| GGTCATCAGACATGGTTAAT+GGG | + | chr1.3:53400137-53400156 | None:intergenic | 40.0% | |
| GTCTATCTGCTGAAGTTGTA+AGG | + | chr1.3:53404158-53404177 | None:intergenic | 40.0% | |
| GTTGGATCCATTCTTTGTCA+TGG | + | chr1.3:53404550-53404569 | None:intergenic | 40.0% | |
| TACTACATCTGTATCCGATG+AGG | - | chr1.3:53401890-53401909 | MS.gene82321:intron | 40.0% | |
| TATCGAATTTCTTGCGTAGC+TGG | + | chr1.3:53403741-53403760 | None:intergenic | 40.0% | |
| TGCTGCTATTGTTACTCAGT+TGG | - | chr1.3:53401580-53401599 | MS.gene82321:intron | 40.0% | |
| TGGTCATCAGACATGGTTAA+TGG | + | chr1.3:53400138-53400157 | None:intergenic | 40.0% | |
| TTATGCTCGGTCTGCATTAT+AGG | + | chr1.3:53404503-53404522 | None:intergenic | 40.0% | |
| TTGTGTGCAATTTCCTCACT+TGG | + | chr1.3:53401191-53401210 | None:intergenic | 40.0% | |
| TTTCAGCAAAGCCACAGATT+TGG | + | chr1.3:53401348-53401367 | None:intergenic | 40.0% | |
| TTTGTGGTGTTTAGTCCTCA+AGG | - | chr1.3:53403862-53403881 | MS.gene82321:CDS | 40.0% | |
| ! | AAGCACATTTTCTTCTACGG+CGG | - | chr1.3:53404524-53404543 | MS.gene82321:intron | 40.0% |
| ! | GTTCCTCAGTTGCTTTATGA+TGG | - | chr1.3:53402131-53402150 | MS.gene82321:intron | 40.0% |
| !! | AAGAGTACCTTTGATGATGG+TGG | + | chr1.3:53400079-53400098 | None:intergenic | 40.0% |
| !! | AGCACCACTGTTATTTCAGT+TGG | + | chr1.3:53402086-53402105 | None:intergenic | 40.0% |
| !! | CGATGTTTTTGAATTGCTGC+AGG | + | chr1.3:53401392-53401411 | None:intergenic | 40.0% |
| AAAGCCACAGATTTGGCAAG+TGG | + | chr1.3:53401341-53401360 | None:intergenic | 45.0% | |
| AAGCCACAGATTTGGCAAGT+GGG | + | chr1.3:53401340-53401359 | None:intergenic | 45.0% | |
| ACATCATCCTCAGTAGACTG+AGG | - | chr1.3:53401789-53401808 | MS.gene82321:intron | 45.0% | |
| ACATTCTGCACCACATACCA+TGG | + | chr1.3:53403781-53403800 | None:intergenic | 45.0% | |
| CAACAGATGGTCCTTTGCTA+AGG | + | chr1.3:53404796-53404815 | None:intergenic | 45.0% | |
| CAATGTGTGTTGAACGTGCA+AGG | + | chr1.3:53400245-53400264 | None:intergenic | 45.0% | |
| CACAAAGGTTGTTCCTGCTT+TGG | - | chr1.3:53401505-53401524 | MS.gene82321:CDS | 45.0% | |
| CATTGTTGACAGTGTTGTGC+AGG | - | chr1.3:53400260-53400279 | MS.gene82321:CDS | 45.0% | |
| CTTAAGACACTCCTATCAGC+TGG | - | chr1.3:53400096-53400115 | MS.gene82321:CDS | 45.0% | |
| GAATTCAGAAGGACAGGAAC+TGG | - | chr1.3:53403968-53403987 | MS.gene82321:intron | 45.0% | |
| GAGTAAGATGCCATGGTATG+TGG | - | chr1.3:53403768-53403787 | MS.gene82321:CDS | 45.0% | |
| GCACCATCATAAAGCAACTG+AGG | + | chr1.3:53402137-53402156 | None:intergenic | 45.0% | |
| GGATTCCAATCGTCGAAGAA+TGG | - | chr1.3:53403710-53403729 | MS.gene82321:CDS | 45.0% | |
| GGTGTTTAGTCCTCAAGGAA+AGG | - | chr1.3:53403867-53403886 | MS.gene82321:CDS | 45.0% | |
| TAGACTGAGGAAGCAGATCA+CGG | - | chr1.3:53401802-53401821 | MS.gene82321:intron | 45.0% | |
| TCATATGCAAGCTCCAAAGC+AGG | + | chr1.3:53401521-53401540 | None:intergenic | 45.0% | |
| TCCATGGTACTAGGACAATC+AGG | + | chr1.3:53405010-53405029 | None:intergenic | 45.0% | |
| TCCTGATTGTCCTAGTACCA+TGG | - | chr1.3:53405006-53405025 | MS.gene82321:CDS | 45.0% | |
| TCGTTCCATTCTTCGACGAT+TGG | + | chr1.3:53403718-53403737 | None:intergenic | 45.0% | |
| TCTCAATCTCACCAGCTGAT+AGG | + | chr1.3:53400110-53400129 | None:intergenic | 45.0% | |
| TCTGTTGTGTTGAGTGGTCA+TGG | - | chr1.3:53404809-53404828 | MS.gene82321:intron | 45.0% | |
| TGACCACTCAACACAACAGA+TGG | + | chr1.3:53404809-53404828 | None:intergenic | 45.0% | |
| TGCTTGCTCCAAGCTTACTT+TGG | + | chr1.3:53400370-53400389 | None:intergenic | 45.0% | |
| TGTGCAATTTCCTCACTTGG+TGG | + | chr1.3:53401188-53401207 | None:intergenic | 45.0% | |
| TTCTACTCTAGATGTCACGG+AGG | - | chr1.3:53403621-53403640 | MS.gene82321:CDS | 45.0% | |
| TTGTGTTGCACCTTTCCTTG+AGG | + | chr1.3:53403880-53403899 | None:intergenic | 45.0% | |
| ! | ACAGGGTACCAAAGTAAGCT+TGG | - | chr1.3:53400359-53400378 | MS.gene82321:CDS | 45.0% |
| ! | ATTGACTTCAAGGTGCACAG+TGG | + | chr1.3:53400426-53400445 | None:intergenic | 45.0% |
| ! | TGGGAGAGAAGCGATTTTAG+TGG | - | chr1.3:53404109-53404128 | MS.gene82321:intron | 45.0% |
| !! | CTCGTAAGTCGATTTTGGAG+CGG | - | chr1.3:53404668-53404687 | MS.gene82321:intron | 45.0% |
| !! | TGATGGTGCTACCAAGACTA+CGG | - | chr1.3:53402148-53402167 | MS.gene82321:intron | 45.0% |
| !! | TGCAAGGGTATTCTGAGCAA+GGG | + | chr1.3:53400229-53400248 | None:intergenic | 45.0% |
| !! | TATTATACAAAAAATTAAAT+AGG | + | chr1.3:53403346-53403365 | None:intergenic | 5.0% |
| !! | TTTGTAAAAAAAAAAAAATA+CGG | - | chr1.3:53402719-53402738 | MS.gene82321:intron | 5.0% |
| !!! | AAAAAAAAAATATTTTTTGT+TGG | + | chr1.3:53402880-53402899 | None:intergenic | 5.0% |
| !!! | ATATTTTATTTTTTGTTTTA+AGG | - | chr1.3:53401955-53401974 | MS.gene82321:intron | 5.0% |
| !!! | ATTAATTTTATTAATTATGT+AGG | - | chr1.3:53401726-53401745 | MS.gene82321:intron | 5.0% |
| !!! | TATTTTATTTTTTGTTTTAA+GGG | - | chr1.3:53401956-53401975 | MS.gene82321:intron | 5.0% |
| !!! | TTAATTTTATTAATTATGTA+GGG | - | chr1.3:53401727-53401746 | MS.gene82321:intron | 5.0% |
| AAGCAACTGAGGAACACCCT+TGG | + | chr1.3:53402126-53402145 | None:intergenic | 50.0% | |
| ACGGTCTGTCGTCAACAGAT+AGG | - | chr1.3:53401821-53401840 | MS.gene82321:intron | 50.0% | |
| AGACCCACTTGCCAAATCTG+TGG | - | chr1.3:53401334-53401353 | MS.gene82321:CDS | 50.0% | |
| AGCAACTGAGGAACACCCTT+GGG | + | chr1.3:53402125-53402144 | None:intergenic | 50.0% | |
| ATGAGTGACACGAGCAACAC+TGG | + | chr1.3:53404927-53404946 | None:intergenic | 50.0% | |
| GAATTGCTGCAGGCTTTGCT+AGG | + | chr1.3:53401382-53401401 | None:intergenic | 50.0% | |
| GGACCATCTGTTGTGTTGAG+TGG | - | chr1.3:53404803-53404822 | MS.gene82321:intron | 50.0% | |
| TCTGCTTCCTCAGTCTACTG+AGG | + | chr1.3:53401799-53401818 | None:intergenic | 50.0% | |
| ! | CGCTCCAAAATCGACTTACG+AGG | + | chr1.3:53404670-53404689 | None:intergenic | 50.0% |
| ! | TGTGTCACTGTGGACATGTG+TGG | + | chr1.3:53400181-53400200 | None:intergenic | 50.0% |
| !! | GTGCAAGGGTATTCTGAGCA+AGG | + | chr1.3:53400230-53400249 | None:intergenic | 50.0% |
| ACGGCGGCCATGACAAAGAA+TGG | - | chr1.3:53404540-53404559 | MS.gene82321:intron | 55.0% | |
| GCTGCAGGCTTTGCTAGGAT+CGG | + | chr1.3:53401377-53401396 | None:intergenic | 55.0% | |
| GGTTGGGCTCTCCTTAGCAA+AGG | - | chr1.3:53404782-53404801 | MS.gene82321:intron | 55.0% | |
| GTCATGCAAGCCACCAAGTG+AGG | - | chr1.3:53401175-53401194 | MS.gene82321:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 53400072 | 53405087 | 53400072 | ID=MS.gene82321 |
| chr1.3 | mRNA | 53400072 | 53405087 | 53400072 | ID=MS.gene82321.t1;Parent=MS.gene82321 |
| chr1.3 | exon | 53404878 | 53405087 | 53404878 | ID=MS.gene82321.t1.exon1;Parent=MS.gene82321.t1 |
| chr1.3 | CDS | 53404878 | 53405087 | 53404878 | ID=cds.MS.gene82321.t1;Parent=MS.gene82321.t1 |
| chr1.3 | exon | 53404704 | 53404796 | 53404704 | ID=MS.gene82321.t1.exon2;Parent=MS.gene82321.t1 |
| chr1.3 | CDS | 53404704 | 53404796 | 53404704 | ID=cds.MS.gene82321.t1;Parent=MS.gene82321.t1 |
| chr1.3 | exon | 53403538 | 53403986 | 53403538 | ID=MS.gene82321.t1.exon3;Parent=MS.gene82321.t1 |
| chr1.3 | CDS | 53403538 | 53403986 | 53403538 | ID=cds.MS.gene82321.t1;Parent=MS.gene82321.t1 |
| chr1.3 | exon | 53403317 | 53403411 | 53403317 | ID=MS.gene82321.t1.exon4;Parent=MS.gene82321.t1 |
| chr1.3 | CDS | 53403317 | 53403411 | 53403317 | ID=cds.MS.gene82321.t1;Parent=MS.gene82321.t1 |
| chr1.3 | exon | 53402990 | 53403120 | 53402990 | ID=MS.gene82321.t1.exon5;Parent=MS.gene82321.t1 |
| chr1.3 | CDS | 53402990 | 53403120 | 53402990 | ID=cds.MS.gene82321.t1;Parent=MS.gene82321.t1 |
| chr1.3 | exon | 53401124 | 53401585 | 53401124 | ID=MS.gene82321.t1.exon6;Parent=MS.gene82321.t1 |
| chr1.3 | CDS | 53401124 | 53401585 | 53401124 | ID=cds.MS.gene82321.t1;Parent=MS.gene82321.t1 |
| chr1.3 | exon | 53400072 | 53400647 | 53400072 | ID=MS.gene82321.t1.exon7;Parent=MS.gene82321.t1 |
| chr1.3 | CDS | 53400072 | 53400647 | 53400072 | ID=cds.MS.gene82321.t1;Parent=MS.gene82321.t1 |
| Gene Sequence |
| Protein sequence |
