Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94242.t1 | XP_003616639.1 | 99 | 206 | 2 | 0 | 28 | 233 | 100 | 305 | 4.00E-113 | 417.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94242.t1 | Q9GZU7 | 36.2 | 185 | 94 | 6 | 28 | 211 | 93 | 254 | 6.3e-19 | 95.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94242.t1 | G7KH15 | 99.0 | 206 | 2 | 0 | 28 | 233 | 100 | 305 | 2.9e-113 | 417.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene94242 | 0.861504 | 9.80E-64 | -1.69E-46 |
| MS.gene049283 | MS.gene94242 | 0.816949 | 4.25E-52 | -1.69E-46 |
| MS.gene049343 | MS.gene94242 | 0.810424 | 1.16E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene94242 | 0.826085 | 3.29E-54 | -1.69E-46 |
| MS.gene050559 | MS.gene94242 | 0.839194 | 1.83E-57 | -1.69E-46 |
| MS.gene050561 | MS.gene94242 | 0.823837 | 1.12E-53 | -1.69E-46 |
| MS.gene050562 | MS.gene94242 | 0.81237 | 4.39E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene94242 | 0.820244 | 7.60E-53 | -1.69E-46 |
| MS.gene052463 | MS.gene94242 | 0.81701 | 4.12E-52 | -1.69E-46 |
| MS.gene052516 | MS.gene94242 | 0.814165 | 1.77E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene94242 | 0.830357 | 3.07E-55 | -1.69E-46 |
| MS.gene052533 | MS.gene94242 | 0.80882 | 2.57E-50 | -1.69E-46 |
| MS.gene052534 | MS.gene94242 | 0.807636 | 4.59E-50 | -1.69E-46 |
| MS.gene053006 | MS.gene94242 | 0.817137 | 3.85E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene94242 | 0.847166 | 1.37E-59 | -1.69E-46 |
| MS.gene053272 | MS.gene94242 | -0.810176 | 1.31E-50 | -1.69E-46 |
| MS.gene05364 | MS.gene94242 | 0.800291 | 1.54E-48 | -1.69E-46 |
| MS.gene053931 | MS.gene94242 | 0.808961 | 2.39E-50 | -1.69E-46 |
| MS.gene05423 | MS.gene94242 | 0.804848 | 1.77E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene94242 | 0.849687 | 2.76E-60 | -1.69E-46 |
| MS.gene054892 | MS.gene94242 | 0.807542 | 4.80E-50 | -1.69E-46 |
| MS.gene054893 | MS.gene94242 | 0.813843 | 2.08E-51 | -1.69E-46 |
| MS.gene05517 | MS.gene94242 | 0.8074 | 5.15E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene94242 | 0.80194 | 7.10E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene94242 | 0.821795 | 3.34E-53 | -1.69E-46 |
| MS.gene055841 | MS.gene94242 | 0.810561 | 1.08E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene94242 | 0.823696 | 1.21E-53 | -1.69E-46 |
| MS.gene056776 | MS.gene94242 | 0.830649 | 2.61E-55 | -1.69E-46 |
| MS.gene05686 | MS.gene94242 | 0.852641 | 4.04E-61 | -1.69E-46 |
| MS.gene05690 | MS.gene94242 | 0.822979 | 1.77E-53 | -1.69E-46 |
| MS.gene057102 | MS.gene94242 | 0.835458 | 1.66E-56 | -1.69E-46 |
| MS.gene057208 | MS.gene94242 | 0.869445 | 3.08E-66 | -1.69E-46 |
| MS.gene058008 | MS.gene94242 | 0.813511 | 2.47E-51 | -1.69E-46 |
| MS.gene058009 | MS.gene94242 | 0.808387 | 3.18E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene94242 | 0.813213 | 2.87E-51 | -1.69E-46 |
| MS.gene058781 | MS.gene94242 | 0.823273 | 1.51E-53 | -1.69E-46 |
| MS.gene058783 | MS.gene94242 | 0.849315 | 3.50E-60 | -1.69E-46 |
| MS.gene058979 | MS.gene94242 | 0.809812 | 1.57E-50 | -1.69E-46 |
| MS.gene05952 | MS.gene94242 | 0.812758 | 3.61E-51 | -1.69E-46 |
| MS.gene05985 | MS.gene94242 | -0.830555 | 2.75E-55 | -1.69E-46 |
| MS.gene060244 | MS.gene94242 | 0.806528 | 7.87E-50 | -1.69E-46 |
| MS.gene060716 | MS.gene94242 | 0.804975 | 1.67E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene94242 | 0.844574 | 6.95E-59 | -1.69E-46 |
| MS.gene060937 | MS.gene94242 | 0.832918 | 7.19E-56 | -1.69E-46 |
| MS.gene061188 | MS.gene94242 | 0.807266 | 5.50E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94242.t1 | MTR_5g082660 | 98.551 | 207 | 3 | 0 | 27 | 233 | 99 | 305 | 1.10e-152 | 426 |
| MS.gene94242.t1 | MTR_3g070810 | 76.961 | 204 | 47 | 0 | 27 | 230 | 73 | 276 | 7.89e-115 | 330 |
| MS.gene94242.t1 | MTR_2g049420 | 35.714 | 196 | 103 | 6 | 21 | 215 | 155 | 328 | 2.62e-21 | 90.9 |
| MS.gene94242.t1 | MTR_3g006690 | 43.066 | 137 | 74 | 4 | 81 | 216 | 332 | 465 | 2.85e-21 | 92.0 |
| MS.gene94242.t1 | MTR_2g049420 | 36.548 | 197 | 100 | 8 | 21 | 215 | 283 | 456 | 6.92e-21 | 90.9 |
| MS.gene94242.t1 | MTR_2g049420 | 36.548 | 197 | 100 | 8 | 21 | 215 | 292 | 465 | 6.96e-21 | 90.9 |
| MS.gene94242.t1 | MTR_5g045920 | 37.857 | 140 | 83 | 4 | 81 | 219 | 162 | 298 | 4.43e-20 | 87.0 |
| MS.gene94242.t1 | MTR_2g017810 | 38.650 | 163 | 79 | 6 | 20 | 180 | 100 | 243 | 7.69e-17 | 78.2 |
| MS.gene94242.t1 | MTR_3g085395 | 36.296 | 135 | 82 | 4 | 86 | 219 | 241 | 372 | 7.54e-14 | 70.5 |
| MS.gene94242.t1 | MTR_3g085400 | 32.178 | 202 | 110 | 8 | 19 | 219 | 319 | 494 | 1.13e-13 | 70.1 |
| MS.gene94242.t1 | MTR_5g095530 | 28.244 | 131 | 90 | 3 | 83 | 211 | 215 | 343 | 1.16e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94242.t1 | AT3G55960 | 75.980 | 204 | 49 | 0 | 28 | 231 | 100 | 303 | 4.09e-114 | 329 |
| MS.gene94242.t1 | AT1G29780 | 39.080 | 174 | 85 | 6 | 22 | 194 | 46 | 199 | 5.47e-24 | 95.9 |
| MS.gene94242.t1 | AT5G11860 | 33.663 | 202 | 107 | 7 | 19 | 219 | 109 | 284 | 2.86e-20 | 87.8 |
| MS.gene94242.t1 | AT5G11860 | 33.663 | 202 | 107 | 7 | 19 | 219 | 109 | 284 | 2.86e-20 | 87.8 |
| MS.gene94242.t1 | AT5G11860 | 33.663 | 202 | 107 | 7 | 19 | 219 | 109 | 284 | 2.86e-20 | 87.8 |
| MS.gene94242.t1 | AT5G11860 | 33.663 | 202 | 107 | 7 | 19 | 219 | 109 | 284 | 2.86e-20 | 87.8 |
| MS.gene94242.t1 | AT5G11860 | 33.663 | 202 | 107 | 7 | 19 | 219 | 109 | 284 | 2.86e-20 | 87.8 |
| MS.gene94242.t1 | AT1G29770 | 45.455 | 99 | 52 | 2 | 83 | 180 | 143 | 240 | 1.04e-19 | 85.5 |
| MS.gene94242.t1 | AT5G45700 | 38.365 | 159 | 76 | 6 | 25 | 181 | 97 | 235 | 4.46e-19 | 84.0 |
| MS.gene94242.t1 | AT4G18140 | 40.714 | 140 | 79 | 4 | 79 | 217 | 303 | 439 | 5.49e-19 | 85.5 |
| MS.gene94242.t1 | AT4G18140 | 41.304 | 138 | 77 | 4 | 79 | 215 | 303 | 437 | 8.55e-19 | 84.7 |
| MS.gene94242.t1 | AT4G18140 | 41.304 | 138 | 77 | 4 | 79 | 215 | 303 | 437 | 8.55e-19 | 84.7 |
| MS.gene94242.t1 | AT4G18140 | 41.304 | 138 | 77 | 4 | 79 | 215 | 303 | 437 | 8.55e-19 | 84.7 |
| MS.gene94242.t1 | AT4G18140 | 41.304 | 138 | 77 | 4 | 79 | 215 | 303 | 437 | 9.96e-19 | 84.7 |
| MS.gene94242.t1 | AT4G18140 | 41.304 | 138 | 77 | 4 | 79 | 215 | 303 | 437 | 9.96e-19 | 84.7 |
| MS.gene94242.t1 | AT5G46410 | 36.458 | 192 | 99 | 6 | 25 | 215 | 280 | 449 | 1.31e-18 | 84.3 |
| MS.gene94242.t1 | AT5G46410 | 36.458 | 192 | 99 | 6 | 25 | 215 | 280 | 449 | 1.31e-18 | 84.3 |
| MS.gene94242.t1 | AT5G46410 | 36.458 | 192 | 99 | 6 | 25 | 215 | 283 | 452 | 1.48e-18 | 84.3 |
| MS.gene94242.t1 | AT1G55900 | 31.333 | 150 | 93 | 6 | 83 | 225 | 214 | 360 | 3.51e-16 | 77.0 |
| MS.gene94242.t1 | AT1G55900 | 32.061 | 131 | 84 | 4 | 83 | 211 | 214 | 341 | 5.18e-16 | 76.6 |
Find 48 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACATGGAATTCCATTTAC+TGG | 0.300795 | 5.4:+65355449 | None:intergenic |
| AGAAGCTAGTCTTCTGGGTT+TGG | 0.308667 | 5.4:-65358048 | MS.gene94242:CDS |
| TGGTTTGAATTGGTTTGATA+TGG | 0.319744 | 5.4:-65357356 | MS.gene94242:CDS |
| GATTATAGAAGCTAGTCTTC+TGG | 0.323049 | 5.4:-65358054 | MS.gene94242:CDS |
| AAGCTGGAATCCCTTGCTTC+TGG | 0.326322 | 5.4:+65355185 | None:intergenic |
| TGTGGATGCCCAGCAGAAAA+TGG | 0.348481 | 5.4:+65355425 | None:intergenic |
| TTTGTATTGCAACCAGTAAA+TGG | 0.348553 | 5.4:-65355461 | MS.gene94242:CDS |
| ATTATAGAAGCTAGTCTTCT+GGG | 0.376524 | 5.4:-65358053 | MS.gene94242:CDS |
| GATTCAGTTTACGACTTTAC+CGG | 0.385425 | 5.4:-65356982 | MS.gene94242:CDS |
| CAATTGAAGCTGGTTTGAAT+TGG | 0.389764 | 5.4:-65357366 | MS.gene94242:CDS |
| CTTTGAACGGCCTGGGTTGA+AGG | 0.399020 | 5.4:-65357200 | MS.gene94242:CDS |
| GTTACAGTCTTTGAACGGCC+TGG | 0.419543 | 5.4:-65357208 | MS.gene94242:CDS |
| TTACAGTCTTTGAACGGCCT+GGG | 0.443967 | 5.4:-65357207 | MS.gene94242:CDS |
| TACAATGTCCAACTGGAAGC+TGG | 0.452345 | 5.4:+65355169 | None:intergenic |
| GTCAAGATCCTTCGATATGC+AGG | 0.466355 | 5.4:+65355517 | None:intergenic |
| TAAATCCTACAATGTCCAAC+TGG | 0.468553 | 5.4:+65355162 | None:intergenic |
| AGCTTCCAGTTGGACATTGT+AGG | 0.472847 | 5.4:-65355167 | None:intergenic |
| ACCTACGTGCTAATTGTTGA+AGG | 0.482376 | 5.4:+65356959 | None:intergenic |
| CGTTCTCAAGCAATTGAAGC+TGG | 0.482506 | 5.4:-65357376 | MS.gene94242:CDS |
| CTGTTTACTGCGGGTCTCGA+AGG | 0.487308 | 5.4:-65357139 | MS.gene94242:intron |
| CTTGTAGGTAGTACTTGACT+TGG | 0.496374 | 5.4:-65357449 | MS.gene94242:intron |
| TATATGCTTGCAGGGAACAT+AGG | 0.502070 | 5.4:-65355559 | MS.gene94242:intron |
| GCTTGAGAACGTAGTGCAGC+TGG | 0.502523 | 5.4:+65357388 | None:intergenic |
| CCAGCAGAAAATGGAATACA+TGG | 0.507302 | 5.4:+65355434 | None:intergenic |
| ACCTACTTCATTGAGTTCAG+TGG | 0.521441 | 5.4:-65357997 | MS.gene94242:intron |
| ATATGCTTGCAGGGAACATA+GGG | 0.531954 | 5.4:-65355558 | MS.gene94242:intron |
| GTTAAGAATTCCTTCAACCC+AGG | 0.544659 | 5.4:+65357190 | None:intergenic |
| GACCTGGTGCTGTTTACTGC+GGG | 0.551658 | 5.4:-65357148 | MS.gene94242:CDS |
| CTGATTGGTTCCAGAAGCAA+GGG | 0.555776 | 5.4:-65355195 | MS.gene94242:CDS |
| TCTTAGTGAATTTGCTGACC+TGG | 0.560529 | 5.4:-65357164 | MS.gene94242:CDS |
| ACTGATTGGTTCCAGAAGCA+AGG | 0.564868 | 5.4:-65355196 | MS.gene94242:CDS |
| TCAGAGAGTTGCTTGAGAAG+TGG | 0.576195 | 5.4:+65355262 | None:intergenic |
| ATTATGTTACAGTCTTTGAA+CGG | 0.582885 | 5.4:-65357213 | MS.gene94242:CDS |
| ACGTGCTAATTGTTGAAGGC+CGG | 0.585930 | 5.4:+65356963 | None:intergenic |
| ACCACTGAACTCAATGAAGT+AGG | 0.593218 | 5.4:+65357996 | None:intergenic |
| GACCCGCAGTAAACAGCACC+AGG | 0.597074 | 5.4:+65357146 | None:intergenic |
| GGAACATAGGGAACATGTCA+AGG | 0.601739 | 5.4:-65355546 | MS.gene94242:CDS |
| TGACCTGGTGCTGTTTACTG+CGG | 0.602861 | 5.4:-65357149 | MS.gene94242:CDS |
| AAGGGATTCCAGCTTCCAGT+TGG | 0.603406 | 5.4:-65355177 | MS.gene94242:CDS |
| GGTTGCAATACAAAGCTGAA+AGG | 0.613648 | 5.4:+65355470 | None:intergenic |
| GGATCTTACCTGCATATCGA+AGG | 0.615597 | 5.4:-65355525 | MS.gene94242:CDS |
| TCTGGAACCAATCAGTCATG+TGG | 0.624098 | 5.4:+65355203 | None:intergenic |
| TTGTCTATTATGTCAACTAG+CGG | 0.643882 | 5.4:+65357013 | None:intergenic |
| TAGTGTACCTGGGTGTCATG+TGG | 0.653433 | 5.4:+65355407 | None:intergenic |
| TGGGCATCCACATGACACCC+AGG | 0.657885 | 5.4:-65355414 | MS.gene94242:intron |
| GGAATGTGTATCTTCTGACA+AGG | 0.672929 | 5.4:-65357335 | MS.gene94242:intron |
| GCTAGTTGACATAATAGACA+AGG | 0.714010 | 5.4:-65357011 | MS.gene94242:CDS |
| TGTTGTCTACAATTACAATG+CGG | 0.772106 | 5.4:+65355495 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAAAAGTAAAAACAT+TGG | + | chr5.4:65355569-65355588 | None:intergenic | 10.0% |
| !! | ACATTTATAATAATTAACTA+AGG | + | chr5.4:65356629-65356648 | None:intergenic | 10.0% |
| !! | ATAATAAAAGTAAAAACATT+GGG | + | chr5.4:65355568-65355587 | None:intergenic | 10.0% |
| !! | AAGACATTTATAATTAACTA+AGG | + | chr5.4:65356770-65356789 | None:intergenic | 15.0% |
| !! | ATTACACAAATATATAACAT+TGG | + | chr5.4:65356311-65356330 | None:intergenic | 15.0% |
| !! | TTTATAATAATTAACTAAGG+AGG | + | chr5.4:65356626-65356645 | None:intergenic | 15.0% |
| !!! | TGTCTGTATTTAAAATATAA+TGG | - | chr5.4:65357478-65357497 | MS.gene94242:intron | 15.0% |
| !!! | TTCTGAAATATTTAAAGAAT+TGG | + | chr5.4:65356155-65356174 | None:intergenic | 15.0% |
| !! | ACAAATATATAACATTGGAA+TGG | + | chr5.4:65356306-65356325 | None:intergenic | 20.0% |
| !! | ATAACATTTATAAGAATGCA+TGG | + | chr5.4:65357648-65357667 | None:intergenic | 20.0% |
| !! | ATAATTGTAAAATTCGAGAA+AGG | + | chr5.4:65357583-65357602 | None:intergenic | 20.0% |
| !! | TGTAAGCACTATAATTAATA+AGG | + | chr5.4:65356884-65356903 | None:intergenic | 20.0% |
| !!! | AAACAATTGTGTTGATAAAA+AGG | + | chr5.4:65357016-65357035 | None:intergenic | 20.0% |
| !!! | CTTTTAGTAGATTTGTTAAT+AGG | - | chr5.4:65357190-65357209 | MS.gene94242:CDS | 20.0% |
| !!! | GGGTGATTTTATTTTTTTAT+GGG | + | chr5.4:65357871-65357890 | None:intergenic | 20.0% |
| !!! | TGGGTGATTTTATTTTTTTA+TGG | + | chr5.4:65357872-65357891 | None:intergenic | 20.0% |
| !!! | TTTATGTACTTTTGATTTTC+TGG | - | chr5.4:65357070-65357089 | MS.gene94242:intron | 20.0% |
| !!! | TTTTTATCAACACAATTGTT+TGG | - | chr5.4:65357015-65357034 | MS.gene94242:CDS | 20.0% |
| !!! | TTTTTTGTTCGTTGAAATTT+TGG | - | chr5.4:65356981-65357000 | MS.gene94242:CDS | 20.0% |
| ! | AAAACATAAGAATGCTAGAT+GGG | + | chr5.4:65357891-65357910 | None:intergenic | 25.0% |
| ! | AATTTCAACGAACAAAAAAG+AGG | + | chr5.4:65356980-65356999 | None:intergenic | 25.0% |
| ! | ATAAATGTTATATGCTTGCA+GGG | - | chr5.4:65357657-65357676 | MS.gene94242:intron | 25.0% |
| ! | ATTATGTTACAGTCTTTGAA+CGG | - | chr5.4:65356011-65356030 | MS.gene94242:intron | 25.0% |
| ! | TAAAACATAAGAATGCTAGA+TGG | + | chr5.4:65357892-65357911 | None:intergenic | 25.0% |
| ! | TAATATCTTCAAAGTCCTAA+GGG | - | chr5.4:65357047-65357066 | MS.gene94242:intron | 25.0% |
| ! | TACTATCAAATTAGAACTAC+TGG | - | chr5.4:65357372-65357391 | MS.gene94242:CDS | 25.0% |
| ! | TATAAATGTTATATGCTTGC+AGG | - | chr5.4:65357656-65357675 | MS.gene94242:intron | 25.0% |
| ! | TTTAAATACAGACAGACATA+TGG | + | chr5.4:65357472-65357491 | None:intergenic | 25.0% |
| !! | CTAAAAATTCATCACGTTTT+TGG | - | chr5.4:65355281-65355300 | MS.gene94242:CDS | 25.0% |
| !! | TTTTTGTGTCATATTCTTAC+AGG | - | chr5.4:65356178-65356197 | MS.gene94242:intron | 25.0% |
| !!! | GTTTGTCCATTTTAAAACAT+TGG | - | chr5.4:65355452-65355471 | MS.gene94242:CDS | 25.0% |
| !!! | TAAAATATTTTGACCCTTGT+TGG | - | chr5.4:65357093-65357112 | MS.gene94242:intron | 25.0% |
| !!! | TTCATCTAAGTTTTAGAGAT+TGG | + | chr5.4:65357232-65357251 | None:intergenic | 25.0% |
| !!! | TTTGTGCCAATGTTTTAAAA+TGG | + | chr5.4:65355461-65355480 | None:intergenic | 25.0% |
| AAAAATTCCACATGACTGAT+TGG | - | chr5.4:65358014-65358033 | MS.gene94242:CDS | 30.0% | |
| AAGTGAATCTGTGAATAGAA+GGG | - | chr5.4:65355605-65355624 | MS.gene94242:intron | 30.0% | |
| AGCGCAACAGTTAAATATTA+AGG | + | chr5.4:65356685-65356704 | None:intergenic | 30.0% | |
| ATAACATTGGAATGGAAACA+AGG | + | chr5.4:65356298-65356317 | None:intergenic | 30.0% | |
| ATACATGGAATTCCATTTAC+TGG | + | chr5.4:65357778-65357797 | None:intergenic | 30.0% | |
| CACCAAATATTAGTGTCTTT+GGG | + | chr5.4:65356488-65356507 | None:intergenic | 30.0% | |
| CACGTTATTATCAGAAAACA+TGG | - | chr5.4:65357510-65357529 | MS.gene94242:intron | 30.0% | |
| GATCTTATGTATTCACTTGT+AGG | - | chr5.4:65355760-65355779 | MS.gene94242:intron | 30.0% | |
| GTAATATCTTCAAAGTCCTA+AGG | - | chr5.4:65357046-65357065 | MS.gene94242:intron | 30.0% | |
| GTGTAATTTATCTCTCTTTC+TGG | - | chr5.4:65356324-65356343 | MS.gene94242:intron | 30.0% | |
| TATACTAATCCCAGAAGATA+AGG | + | chr5.4:65357333-65357352 | None:intergenic | 30.0% | |
| TGTTGTCTACAATTACAATG+CGG | + | chr5.4:65357732-65357751 | None:intergenic | 30.0% | |
| TTCAATAGATTAGTGTACCT+GGG | + | chr5.4:65357830-65357849 | None:intergenic | 30.0% | |
| TTGTCTATTATGTCAACTAG+CGG | + | chr5.4:65356214-65356233 | None:intergenic | 30.0% | |
| TTTCAATAGATTAGTGTACC+TGG | + | chr5.4:65357831-65357850 | None:intergenic | 30.0% | |
| TTTGTATTGCAACCAGTAAA+TGG | - | chr5.4:65357763-65357782 | MS.gene94242:intron | 30.0% | |
| ! | AAAAGTGTAAATACAGGAGA+TGG | + | chr5.4:65357919-65357938 | None:intergenic | 30.0% |
| ! | GCTGATAAAAGTGTAAATAC+AGG | + | chr5.4:65357925-65357944 | None:intergenic | 30.0% |
| ! | TCAAAAGTACATAAACCCTT+AGG | + | chr5.4:65357065-65357084 | None:intergenic | 30.0% |
| ! | TGACAAACATTATTTTCAGC+TGG | + | chr5.4:65355639-65355658 | None:intergenic | 30.0% |
| ! | TGGAATTTTTCATAGAGCAA+AGG | + | chr5.4:65358004-65358023 | None:intergenic | 30.0% |
| !! | AACAGTGAAGCTTAGTTTTT+AGG | + | chr5.4:65356116-65356135 | None:intergenic | 30.0% |
| !! | AGAACACAAAATTCTAGTTC+TGG | + | chr5.4:65355941-65355960 | None:intergenic | 30.0% |
| !! | AGATTTGTTAATAGGTAACC+AGG | - | chr5.4:65357198-65357217 | MS.gene94242:CDS | 30.0% |
| !! | ATTATAGAAGCTAGTCTTCT+GGG | - | chr5.4:65355171-65355190 | MS.gene94242:CDS | 30.0% |
| !! | TATGGATTGGGATTTAATAG+AGG | + | chr5.4:65357454-65357473 | None:intergenic | 30.0% |
| !! | TGGTTTGAATTGGTTTGATA+TGG | - | chr5.4:65355868-65355887 | MS.gene94242:intron | 30.0% |
| AACGAACAAAAAAGAGGTTG+AGG | + | chr5.4:65356974-65356993 | None:intergenic | 35.0% | |
| AACGCAAAAAAACTCACATC+TGG | - | chr5.4:65355479-65355498 | MS.gene94242:CDS | 35.0% | |
| ACTTGAGGAGAACTAAAAAG+TGG | + | chr5.4:65357270-65357289 | None:intergenic | 35.0% | |
| AGCGCAACAGTTAAATATCA+AGG | + | chr5.4:65356544-65356563 | None:intergenic | 35.0% | |
| ATACAGACAGACATATGGAT+TGG | + | chr5.4:65357467-65357486 | None:intergenic | 35.0% | |
| CAAGTACTCTCATTAAGTTC+CGG | - | chr5.4:65357285-65357304 | MS.gene94242:intron | 35.0% | |
| CACCCAAAGACACTAATATT+TGG | - | chr5.4:65356483-65356502 | MS.gene94242:intron | 35.0% | |
| CTGGCTATAGATCAATATCA+CGG | - | chr5.4:65357391-65357410 | MS.gene94242:CDS | 35.0% | |
| GAAGTGAATCTGTGAATAGA+AGG | - | chr5.4:65355604-65355623 | MS.gene94242:intron | 35.0% | |
| GATTCACATCCTTATCTTCT+GGG | - | chr5.4:65357321-65357340 | MS.gene94242:intron | 35.0% | |
| GATTCAGTTTACGACTTTAC+CGG | - | chr5.4:65356242-65356261 | MS.gene94242:intron | 35.0% | |
| GCAAATTAATGAACCAGTTC+AGG | + | chr5.4:65355367-65355386 | None:intergenic | 35.0% | |
| GCACCAAATATTAGTGTCTT+TGG | + | chr5.4:65356489-65356508 | None:intergenic | 35.0% | |
| GCTAGTTGACATAATAGACA+AGG | - | chr5.4:65356213-65356232 | MS.gene94242:intron | 35.0% | |
| TACAGACAGACATATGGATT+GGG | + | chr5.4:65357466-65357485 | None:intergenic | 35.0% | |
| TCCAACTTATAGAGAAGATG+AGG | + | chr5.4:65356428-65356447 | None:intergenic | 35.0% | |
| TCCTCATCTTCTCTATAAGT+TGG | - | chr5.4:65356424-65356443 | MS.gene94242:intron | 35.0% | |
| TGAATCCATGCTTTAACAAC+CGG | + | chr5.4:65357307-65357326 | None:intergenic | 35.0% | |
| TGATAGCTGGGAAATATATC+AGG | - | chr5.4:65356358-65356377 | MS.gene94242:intron | 35.0% | |
| TGGCTATAGATCAATATCAC+GGG | - | chr5.4:65357392-65357411 | MS.gene94242:CDS | 35.0% | |
| TTTCTTGTTCACTCAACACT+CGG | - | chr5.4:65356945-65356964 | MS.gene94242:intron | 35.0% | |
| ! | CATGTATTCCATTTTCTGCT+GGG | - | chr5.4:65357791-65357810 | MS.gene94242:intron | 35.0% |
| ! | GCTTGAAGTTTAGAGTCTAT+TGG | - | chr5.4:65357615-65357634 | MS.gene94242:intron | 35.0% |
| !! | CAATTGAAGCTGGTTTGAAT+TGG | - | chr5.4:65355858-65355877 | MS.gene94242:intron | 35.0% |
| !! | CTAGTTCTGGAAAAGCAATT+AGG | + | chr5.4:65355928-65355947 | None:intergenic | 35.0% |
| !! | GAACTTAATGAGAGTACTTG+AGG | + | chr5.4:65357285-65357304 | None:intergenic | 35.0% |
| !! | GATTATAGAAGCTAGTCTTC+TGG | - | chr5.4:65355170-65355189 | MS.gene94242:CDS | 35.0% |
| AAAACAACACTACAGCTCAG+TGG | + | chr5.4:65355423-65355442 | None:intergenic | 40.0% | |
| AAACAACACTACAGCTCAGT+GGG | + | chr5.4:65355422-65355441 | None:intergenic | 40.0% | |
| AACTTGAGTGCAAGTCTTGA+AGG | - | chr5.4:65356903-65356922 | MS.gene94242:intron | 40.0% | |
| AAGTTCCGGTTGTTAAAGCA+TGG | - | chr5.4:65357299-65357318 | MS.gene94242:intron | 40.0% | |
| ACCACTGAACTCAATGAAGT+AGG | + | chr5.4:65355231-65355250 | None:intergenic | 40.0% | |
| ACCTACGTGCTAATTGTTGA+AGG | + | chr5.4:65356268-65356287 | None:intergenic | 40.0% | |
| ACCTACTTCATTGAGTTCAG+TGG | - | chr5.4:65355227-65355246 | MS.gene94242:CDS | 40.0% | |
| ATAATCTCGTGGTGCAATAG+AGG | - | chr5.4:65356724-65356743 | MS.gene94242:intron | 40.0% | |
| ATATGCTTGCAGGGAACATA+GGG | - | chr5.4:65357666-65357685 | MS.gene94242:intron | 40.0% | |
| CCAGCAGAAAATGGAATACA+TGG | + | chr5.4:65357793-65357812 | None:intergenic | 40.0% | |
| CTTGTAGGTAGTACTTGACT+TGG | - | chr5.4:65355775-65355794 | MS.gene94242:intron | 40.0% | |
| GCTTCTGGTAAAACCAACAA+GGG | + | chr5.4:65357109-65357128 | None:intergenic | 40.0% | |
| GGAATGTGTATCTTCTGACA+AGG | - | chr5.4:65355889-65355908 | MS.gene94242:intron | 40.0% | |
| GGATTCACATCCTTATCTTC+TGG | - | chr5.4:65357320-65357339 | MS.gene94242:intron | 40.0% | |
| GGTTGCAATACAAAGCTGAA+AGG | + | chr5.4:65357757-65357776 | None:intergenic | 40.0% | |
| GTTAAGAATTCCTTCAACCC+AGG | + | chr5.4:65356037-65356056 | None:intergenic | 40.0% | |
| GTTATTCGTTGCTGATAGCT+GGG | - | chr5.4:65356346-65356365 | MS.gene94242:intron | 40.0% | |
| TACATTGTTGTGTCCTGAAC+TGG | - | chr5.4:65355351-65355370 | MS.gene94242:intron | 40.0% | |
| TAGAGATTGGAATGAAGTCC+TGG | + | chr5.4:65357219-65357238 | None:intergenic | 40.0% | |
| TATATGCTTGCAGGGAACAT+AGG | - | chr5.4:65357665-65357684 | MS.gene94242:intron | 40.0% | |
| TGAGGAGAACTAAAAAGTGG+AGG | + | chr5.4:65357267-65357286 | None:intergenic | 40.0% | |
| TTCAGTGGATGATAATCTCG+TGG | - | chr5.4:65356572-65356591 | MS.gene94242:intron | 40.0% | |
| TTGAGTGGATGATAATCTCG+TGG | - | chr5.4:65356713-65356732 | MS.gene94242:intron | 40.0% | |
| ! | AGAGGTGAATCTGGATTAGA+CGG | - | chr5.4:65357133-65357152 | MS.gene94242:intron | 40.0% |
| ! | CCATGTATTCCATTTTCTGC+TGG | - | chr5.4:65357790-65357809 | MS.gene94242:intron | 40.0% |
| ! | TTGAGCGTGTTGGATTTTCA+AGG | - | chr5.4:65355964-65355983 | MS.gene94242:intron | 40.0% |
| !! | ATAATCTCGTGGTGCTATAG+AGG | - | chr5.4:65356583-65356602 | MS.gene94242:intron | 40.0% |
| !! | TCTTAGTGAATTTGCTGACC+TGG | - | chr5.4:65356060-65356079 | MS.gene94242:intron | 40.0% |
| !! | TGGATTTTCAAGGAAGGAGA+AGG | - | chr5.4:65355974-65355993 | MS.gene94242:intron | 40.0% |
| AACAACACTACAGCTCAGTG+GGG | + | chr5.4:65355421-65355440 | None:intergenic | 45.0% | |
| ACGTGCTAATTGTTGAAGGC+CGG | + | chr5.4:65356264-65356283 | None:intergenic | 45.0% | |
| CGCTTCTGGTAAAACCAACA+AGG | + | chr5.4:65357110-65357129 | None:intergenic | 45.0% | |
| CGTTCTCAAGCAATTGAAGC+TGG | - | chr5.4:65355848-65355867 | MS.gene94242:intron | 45.0% | |
| GAAAACATAGACGAACCAGC+TGG | + | chr5.4:65357169-65357188 | None:intergenic | 45.0% | |
| GAGTCCAGACCATTGAATCT+TGG | - | chr5.4:65356446-65356465 | MS.gene94242:intron | 45.0% | |
| GCCTTCAACAATTAGCACGT+AGG | - | chr5.4:65356264-65356283 | MS.gene94242:intron | 45.0% | |
| GGAACATAGGGAACATGTCA+AGG | - | chr5.4:65357678-65357697 | MS.gene94242:intron | 45.0% | |
| GGATCTTACCTGCATATCGA+AGG | - | chr5.4:65357699-65357718 | MS.gene94242:intron | 45.0% | |
| GGTTATTCGTTGCTGATAGC+TGG | - | chr5.4:65356345-65356364 | MS.gene94242:intron | 45.0% | |
| GTCAAGATCCTTCGATATGC+AGG | + | chr5.4:65357710-65357729 | None:intergenic | 45.0% | |
| GTGTTCTCATTTGAGCGTGT+TGG | - | chr5.4:65355954-65355973 | MS.gene94242:intron | 45.0% | |
| TACAATGTCCAACTGGAAGC+TGG | + | chr5.4:65358058-65358077 | None:intergenic | 45.0% | |
| TCAGAGAGTTGCTTGAGAAG+TGG | + | chr5.4:65357965-65357984 | None:intergenic | 45.0% | |
| TCAGTGCTGCCAAGATTCAA+TGG | + | chr5.4:65356458-65356477 | None:intergenic | 45.0% | |
| TGAGTGCAAGTCTTGAAGGA+TGG | - | chr5.4:65356907-65356926 | MS.gene94242:intron | 45.0% | |
| TTACAGTCTTTGAACGGCCT+GGG | - | chr5.4:65356017-65356036 | MS.gene94242:intron | 45.0% | |
| TTGCGCTTTGCATAGTTGAG+TGG | - | chr5.4:65356698-65356717 | MS.gene94242:intron | 45.0% | |
| ! | ACTGATTGGTTCCAGAAGCA+AGG | - | chr5.4:65358028-65358047 | MS.gene94242:CDS | 45.0% |
| ! | CTGATTGGTTCCAGAAGCAA+GGG | - | chr5.4:65358029-65358048 | MS.gene94242:CDS | 45.0% |
| ! | TCTGGAACCAATCAGTCATG+TGG | + | chr5.4:65358024-65358043 | None:intergenic | 45.0% |
| !! | AGAAGCTAGTCTTCTGGGTT+TGG | - | chr5.4:65355176-65355195 | MS.gene94242:CDS | 45.0% |
| !! | GCGTGTTGGATTTTCAAGGA+AGG | - | chr5.4:65355968-65355987 | MS.gene94242:intron | 45.0% |
| !!! | GTTTTACCAGAAGCGCTTAG+AGG | - | chr5.4:65357115-65357134 | MS.gene94242:intron | 45.0% |
| AAGCTGGAATCCCTTGCTTC+TGG | + | chr5.4:65358042-65358061 | None:intergenic | 50.0% | |
| AAGGGATTCCAGCTTCCAGT+TGG | - | chr5.4:65358047-65358066 | MS.gene94242:CDS | 50.0% | |
| GATTCACCTCTAAGCGCTTC+TGG | + | chr5.4:65357124-65357143 | None:intergenic | 50.0% | |
| GCTGCCAAGATTCAATGGTC+TGG | + | chr5.4:65356453-65356472 | None:intergenic | 50.0% | |
| GTTACAGTCTTTGAACGGCC+TGG | - | chr5.4:65356016-65356035 | MS.gene94242:intron | 50.0% | |
| TGTGGATGCCCAGCAGAAAA+TGG | + | chr5.4:65357802-65357821 | None:intergenic | 50.0% | |
| TTGCGCTTTGCGTAGTTCAG+TGG | - | chr5.4:65356557-65356576 | MS.gene94242:intron | 50.0% | |
| ! | GAAGCGCTTAGAGGTGAATC+TGG | - | chr5.4:65357124-65357143 | MS.gene94242:intron | 50.0% |
| ! | TAGTGTACCTGGGTGTCATG+TGG | + | chr5.4:65357820-65357839 | None:intergenic | 50.0% |
| !! | TGACCTGGTGCTGTTTACTG+CGG | - | chr5.4:65356075-65356094 | MS.gene94242:intron | 50.0% |
| CTGTTTACTGCGGGTCTCGA+AGG | - | chr5.4:65356085-65356104 | MS.gene94242:intron | 55.0% | |
| GACGGACAAAACTGTCCAGC+TGG | - | chr5.4:65357151-65357170 | MS.gene94242:CDS | 55.0% | |
| GCTTGAGAACGTAGTGCAGC+TGG | + | chr5.4:65355839-65355858 | None:intergenic | 55.0% | |
| ! | CTTTGAACGGCCTGGGTTGA+AGG | - | chr5.4:65356024-65356043 | MS.gene94242:intron | 55.0% |
| !! | GACCTGGTGCTGTTTACTGC+GGG | - | chr5.4:65356076-65356095 | MS.gene94242:intron | 55.0% |
| GACCCGCAGTAAACAGCACC+AGG | + | chr5.4:65356081-65356100 | None:intergenic | 60.0% | |
| TGGGCATCCACATGACACCC+AGG | - | chr5.4:65357810-65357829 | MS.gene94242:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 65355168 | 65358078 | 65355168 | ID=MS.gene94242 |
| chr5.4 | mRNA | 65355168 | 65358078 | 65355168 | ID=MS.gene94242.t1;Parent=MS.gene94242 |
| chr5.4 | exon | 65357998 | 65358078 | 65357998 | ID=MS.gene94242.t1.exon1;Parent=MS.gene94242.t1 |
| chr5.4 | CDS | 65357998 | 65358078 | 65357998 | ID=cds.MS.gene94242.t1;Parent=MS.gene94242.t1 |
| chr5.4 | exon | 65357336 | 65357464 | 65357336 | ID=MS.gene94242.t1.exon2;Parent=MS.gene94242.t1 |
| chr5.4 | CDS | 65357336 | 65357464 | 65357336 | ID=cds.MS.gene94242.t1;Parent=MS.gene94242.t1 |
| chr5.4 | exon | 65357140 | 65357260 | 65357140 | ID=MS.gene94242.t1.exon3;Parent=MS.gene94242.t1 |
| chr5.4 | CDS | 65357140 | 65357260 | 65357140 | ID=cds.MS.gene94242.t1;Parent=MS.gene94242.t1 |
| chr5.4 | exon | 65356965 | 65357046 | 65356965 | ID=MS.gene94242.t1.exon4;Parent=MS.gene94242.t1 |
| chr5.4 | CDS | 65356965 | 65357046 | 65356965 | ID=cds.MS.gene94242.t1;Parent=MS.gene94242.t1 |
| chr5.4 | exon | 65355415 | 65355568 | 65355415 | ID=MS.gene94242.t1.exon5;Parent=MS.gene94242.t1 |
| chr5.4 | CDS | 65355415 | 65355568 | 65355415 | ID=cds.MS.gene94242.t1;Parent=MS.gene94242.t1 |
| chr5.4 | exon | 65355168 | 65355302 | 65355168 | ID=MS.gene94242.t1.exon6;Parent=MS.gene94242.t1 |
| chr5.4 | CDS | 65355168 | 65355302 | 65355168 | ID=cds.MS.gene94242.t1;Parent=MS.gene94242.t1 |
| Gene Sequence |
| Protein sequence |
