Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96814.t1 | XP_003607701.1 | 98.7 | 237 | 3 | 0 | 1 | 237 | 1 | 237 | 9.90E-104 | 386.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96814.t1 | Q9FH37 | 70.3 | 239 | 64 | 3 | 1 | 237 | 1 | 234 | 1.4e-61 | 237.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96814.t1 | B7FHK4 | 98.7 | 237 | 3 | 0 | 1 | 237 | 1 | 237 | 7.2e-104 | 386.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene96814.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049129 | MS.gene96814 | 0.806251 | 9.01E-50 | -1.69E-46 |
| MS.gene049283 | MS.gene96814 | -0.809879 | 1.52E-50 | -1.69E-46 |
| MS.gene049580 | MS.gene96814 | -0.816244 | 6.11E-52 | -1.69E-46 |
| MS.gene049824 | MS.gene96814 | -0.83338 | 5.51E-56 | -1.69E-46 |
| MS.gene049825 | MS.gene96814 | -0.859508 | 3.94E-63 | -1.69E-46 |
| MS.gene049873 | MS.gene96814 | -0.834124 | 3.59E-56 | -1.69E-46 |
| MS.gene050752 | MS.gene96814 | -0.840337 | 9.24E-58 | -1.69E-46 |
| MS.gene050945 | MS.gene96814 | -0.81994 | 8.92E-53 | -1.69E-46 |
| MS.gene050955 | MS.gene96814 | -0.833391 | 5.48E-56 | -1.69E-46 |
| MS.gene051003 | MS.gene96814 | -0.821832 | 3.27E-53 | -1.69E-46 |
| MS.gene051234 | MS.gene96814 | -0.825432 | 4.70E-54 | -1.69E-46 |
| MS.gene051343 | MS.gene96814 | -0.807545 | 4.80E-50 | -1.69E-46 |
| MS.gene05134 | MS.gene96814 | -0.814522 | 1.48E-51 | -1.69E-46 |
| MS.gene051676 | MS.gene96814 | -0.808779 | 2.62E-50 | -1.69E-46 |
| MS.gene05188 | MS.gene96814 | -0.80456 | 2.04E-49 | -1.69E-46 |
| MS.gene051902 | MS.gene96814 | -0.834398 | 3.07E-56 | -1.69E-46 |
| MS.gene051975 | MS.gene96814 | -0.821447 | 4.02E-53 | -1.69E-46 |
| MS.gene052072 | MS.gene96814 | -0.831279 | 1.83E-55 | -1.69E-46 |
| MS.gene052947 | MS.gene96814 | -0.825253 | 5.18E-54 | -1.69E-46 |
| MS.gene053122 | MS.gene96814 | -0.800682 | 1.29E-48 | -1.69E-46 |
| MS.gene053226 | MS.gene96814 | -0.821141 | 4.73E-53 | -1.69E-46 |
| MS.gene05364 | MS.gene96814 | -0.857555 | 1.51E-62 | -1.69E-46 |
| MS.gene053931 | MS.gene96814 | -0.81859 | 1.81E-52 | -1.69E-46 |
| MS.gene053995 | MS.gene96814 | -0.802742 | 4.86E-49 | -1.69E-46 |
| MS.gene054403 | MS.gene96814 | -0.845257 | 4.55E-59 | -1.69E-46 |
| MS.gene05517 | MS.gene96814 | -0.800798 | 1.22E-48 | -1.69E-46 |
| MS.gene05548 | MS.gene96814 | -0.825885 | 3.67E-54 | -1.69E-46 |
| MS.gene055512 | MS.gene96814 | -0.805595 | 1.24E-49 | -1.69E-46 |
| MS.gene055555 | MS.gene96814 | -0.857953 | 1.15E-62 | -1.69E-46 |
| MS.gene055808 | MS.gene96814 | -0.822374 | 2.45E-53 | -1.69E-46 |
| MS.gene055841 | MS.gene96814 | -0.830686 | 2.55E-55 | -1.69E-46 |
| MS.gene056091 | MS.gene96814 | -0.818193 | 2.23E-52 | -1.69E-46 |
| MS.gene05689 | MS.gene96814 | -0.803677 | 3.11E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene96814 | -0.818734 | 1.68E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene96814 | -0.845586 | 3.70E-59 | -1.69E-46 |
| MS.gene057208 | MS.gene96814 | -0.808603 | 2.86E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene96814 | -0.869809 | 2.34E-66 | -1.69E-46 |
| MS.gene05781 | MS.gene96814 | -0.802943 | 4.41E-49 | -1.69E-46 |
| MS.gene057890 | MS.gene96814 | 0.804361 | 2.24E-49 | -1.69E-46 |
| MS.gene058008 | MS.gene96814 | -0.805375 | 1.38E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene96814 | -0.803536 | 3.33E-49 | -1.69E-46 |
| MS.gene058783 | MS.gene96814 | -0.801192 | 1.01E-48 | -1.69E-46 |
| MS.gene059146 | MS.gene96814 | -0.823292 | 1.50E-53 | -1.69E-46 |
| MS.gene05950 | MS.gene96814 | -0.802373 | 5.78E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene96814 | -0.8196 | 1.07E-52 | -1.69E-46 |
| MS.gene05985 | MS.gene96814 | 0.848261 | 6.86E-60 | -1.69E-46 |
| MS.gene059935 | MS.gene96814 | -0.810741 | 9.91E-51 | -1.69E-46 |
| MS.gene06011 | MS.gene96814 | -0.80372 | 3.05E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene96814 | -0.805131 | 1.55E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene96814 | -0.818272 | 2.14E-52 | -1.69E-46 |
| MS.gene060586 | MS.gene96814 | -0.816515 | 5.31E-52 | -1.69E-46 |
| MS.gene060763 | MS.gene96814 | -0.845929 | 2.99E-59 | -1.69E-46 |
| MS.gene060830 | MS.gene96814 | -0.811481 | 6.85E-51 | -1.69E-46 |
| MS.gene060935 | MS.gene96814 | -0.832936 | 7.11E-56 | -1.69E-46 |
| MS.gene060937 | MS.gene96814 | -0.828328 | 9.55E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96814.t1 | MTR_4g081370 | 98.734 | 237 | 3 | 0 | 1 | 237 | 1 | 237 | 3.08e-176 | 483 |
| MS.gene96814.t1 | MTR_4g081370 | 97.906 | 191 | 4 | 0 | 47 | 237 | 3 | 193 | 2.20e-136 | 381 |
| MS.gene96814.t1 | MTR_2g082640 | 78.243 | 239 | 41 | 5 | 1 | 237 | 1 | 230 | 1.63e-125 | 355 |
| MS.gene96814.t1 | MTR_2g089000 | 49.805 | 257 | 93 | 6 | 9 | 237 | 12 | 260 | 1.80e-74 | 227 |
| MS.gene96814.t1 | MTR_1g043430 | 44.800 | 250 | 110 | 6 | 5 | 237 | 8 | 246 | 2.77e-61 | 192 |
| MS.gene96814.t1 | MTR_4g075480 | 51.515 | 99 | 47 | 1 | 76 | 174 | 6 | 103 | 3.35e-23 | 95.1 |
| MS.gene96814.t1 | MTR_4g075480 | 51.515 | 99 | 47 | 1 | 76 | 174 | 34 | 131 | 7.52e-23 | 94.7 |
| MS.gene96814.t1 | MTR_1g032600 | 36.913 | 149 | 78 | 4 | 35 | 174 | 33 | 174 | 2.32e-19 | 85.9 |
| MS.gene96814.t1 | MTR_4g108360 | 32.090 | 134 | 73 | 3 | 57 | 182 | 40 | 163 | 6.46e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96814.t1 | AT5G54680 | 72.803 | 239 | 58 | 3 | 1 | 237 | 1 | 234 | 3.93e-120 | 342 |
| MS.gene96814.t1 | AT1G51070 | 60.581 | 241 | 76 | 4 | 1 | 237 | 1 | 226 | 3.35e-97 | 283 |
| MS.gene96814.t1 | AT1G51070 | 67.526 | 194 | 54 | 2 | 48 | 237 | 104 | 292 | 1.41e-87 | 261 |
| MS.gene96814.t1 | AT3G23210 | 54.348 | 184 | 71 | 5 | 59 | 237 | 116 | 291 | 7.53e-55 | 177 |
| MS.gene96814.t1 | AT4G14410 | 52.459 | 183 | 76 | 4 | 57 | 237 | 104 | 277 | 1.13e-54 | 177 |
| MS.gene96814.t1 | AT4G14410 | 52.459 | 183 | 76 | 4 | 57 | 237 | 104 | 277 | 1.13e-54 | 177 |
| MS.gene96814.t1 | AT4G14410 | 52.459 | 183 | 76 | 4 | 57 | 237 | 110 | 283 | 1.28e-54 | 177 |
| MS.gene96814.t1 | AT3G23210 | 54.348 | 184 | 71 | 5 | 59 | 237 | 145 | 320 | 1.39e-54 | 178 |
| MS.gene96814.t1 | AT3G19860 | 35.393 | 178 | 80 | 4 | 76 | 224 | 5 | 176 | 8.98e-23 | 94.4 |
| MS.gene96814.t1 | AT3G19860 | 35.165 | 182 | 83 | 4 | 76 | 228 | 58 | 233 | 2.07e-22 | 94.0 |
| MS.gene96814.t1 | AT3G19860 | 35.393 | 178 | 80 | 4 | 76 | 224 | 36 | 207 | 2.30e-22 | 93.6 |
| MS.gene96814.t1 | AT4G36060 | 36.054 | 147 | 84 | 4 | 65 | 207 | 15 | 155 | 1.60e-18 | 82.4 |
| MS.gene96814.t1 | AT4G36060 | 41.818 | 110 | 63 | 1 | 65 | 174 | 15 | 123 | 1.84e-18 | 82.0 |
| MS.gene96814.t1 | AT4G36060 | 41.818 | 110 | 63 | 1 | 65 | 174 | 33 | 141 | 3.60e-18 | 81.6 |
| MS.gene96814.t1 | AT4G36060 | 36.054 | 147 | 84 | 4 | 65 | 207 | 33 | 173 | 3.87e-18 | 81.6 |
| MS.gene96814.t1 | AT3G47640 | 34.375 | 96 | 62 | 1 | 80 | 175 | 31 | 125 | 8.95e-11 | 60.5 |
| MS.gene96814.t1 | AT3G47640 | 34.375 | 96 | 62 | 1 | 80 | 175 | 31 | 125 | 8.95e-11 | 60.5 |
| MS.gene96814.t1 | AT3G47640 | 34.375 | 96 | 62 | 1 | 80 | 175 | 31 | 125 | 8.95e-11 | 60.5 |
Find 79 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTGGCATCTTTCAACTTT+TGG | 0.148107 | 4.3:-28692376 | None:intergenic |
| AGAAAAGATTAAAGAGTTAA+AGG | 0.172284 | 4.3:+28692409 | MS.gene96814:CDS |
| AACTCCTGGATAACTAATAA+AGG | 0.263274 | 4.3:-28692771 | None:intergenic |
| GATGGCAGCCTTGTCGGTTT+TGG | 0.311125 | 4.3:-28692309 | None:intergenic |
| CCAATTTGTTGCCATGGGCT+TGG | 0.333737 | 4.3:-28692745 | None:intergenic |
| CCAAGCCCATGGCAACAAAT+TGG | 0.353392 | 4.3:+28692745 | MS.gene96814:CDS |
| CAACTTCTCCCGACATGCTT+TGG | 0.380918 | 4.3:-28692116 | None:intergenic |
| TTCCTTCCTCCGCCTTCACC+TGG | 0.380977 | 4.3:+28689724 | MS.gene96814:CDS |
| TCAACCTTGCTTCCAATGTC+AGG | 0.389116 | 4.3:+28689763 | MS.gene96814:CDS |
| TGCCGCAGGGAGTGCGGTGG+GGG | 0.394894 | 4.3:-28692708 | None:intergenic |
| TCCGAATGGTGACACAGTTA+AGG | 0.403203 | 4.3:+28692345 | MS.gene96814:CDS |
| GCTGAAATTGATGGCTCGTT+AGG | 0.408473 | 4.3:+28691348 | MS.gene96814:CDS |
| CTGAGTGGGCCAGGTGAAGG+CGG | 0.415799 | 4.3:-28689733 | None:intergenic |
| GTACCCTTTATTAGTTATCC+AGG | 0.420242 | 4.3:+28692767 | MS.gene96814:CDS |
| CTGAAATTGATGGCTCGTTA+GGG | 0.421366 | 4.3:+28691349 | MS.gene96814:CDS |
| GGGCTGAGTGGGCCAGGTGA+AGG | 0.425472 | 4.3:-28689736 | None:intergenic |
| CAAGGCAGAGAAAGAGAAGT+TGG | 0.426792 | 4.3:+28692640 | MS.gene96814:CDS |
| TTTCCCGGGAAAACACGAAT+TGG | 0.429457 | 4.3:+28689646 | MS.gene96814:CDS |
| ACGAATTGGATTAACGATTA+CGG | 0.430120 | 4.3:+28689660 | MS.gene96814:CDS |
| GCTGCTAGTGCTGAAATTGA+TGG | 0.434631 | 4.3:+28691339 | MS.gene96814:intron |
| TACTAGCTCCAAAGCATGTC+GGG | 0.441749 | 4.3:+28692108 | MS.gene96814:CDS |
| CCCTTAACTGTGTCACCATT+CGG | 0.446843 | 4.3:-28692346 | None:intergenic |
| TAGGGTACGAAATGGTTTCC+CGG | 0.451050 | 4.3:+28689631 | None:intergenic |
| CCGAATGGTGACACAGTTAA+GGG | 0.454973 | 4.3:+28692346 | MS.gene96814:CDS |
| AATTGCCACATTGCAACTCC+TGG | 0.456516 | 4.3:-28692785 | None:intergenic |
| AATCAGGATGGCAGCCTTGT+CGG | 0.459158 | 4.3:-28692315 | None:intergenic |
| ACTCCTGGATAACTAATAAA+GGG | 0.460680 | 4.3:-28692770 | None:intergenic |
| CCATTCGGACAGCATCAATC+AGG | 0.463542 | 4.3:-28692331 | None:intergenic |
| AGGAAGAGCGAAGGTTGAAT+CGG | 0.467851 | 4.3:-28689706 | None:intergenic |
| ACAGAGCCAGCTTAGGCAAC+TGG | 0.474028 | 4.3:-28692857 | None:intergenic |
| TCTGACAGTCTCAAAGAGTC+TGG | 0.477676 | 4.3:+28691375 | MS.gene96814:CDS |
| TATTGAACTAGGCTCCATCT+TGG | 0.477914 | 4.3:+28692271 | MS.gene96814:CDS |
| AATGCCGCAGGGAGTGCGGT+GGG | 0.478526 | 4.3:-28692710 | None:intergenic |
| CCTTGTGCAGCAAATGCCGC+AGG | 0.484770 | 4.3:-28692722 | None:intergenic |
| CTAGGCTCCATCTTGGAGCC+TGG | 0.485022 | 4.3:+28692278 | MS.gene96814:CDS |
| GACATTGGAAGCAAGGTTGA+AGG | 0.488201 | 4.3:-28689760 | None:intergenic |
| GGCCAGGTGAAGGCGGAGGA+AGG | 0.490836 | 4.3:-28689726 | None:intergenic |
| AGGGTACCAATTTGTTGCCA+TGG | 0.491389 | 4.3:-28692751 | None:intergenic |
| GGGTACCAATTTGTTGCCAT+GGG | 0.498672 | 4.3:-28692750 | None:intergenic |
| GCGAAGGTTGAATCGGGAAC+GGG | 0.501622 | 4.3:-28689699 | None:intergenic |
| ACATTGGAAGCAAGGTTGAA+GGG | 0.515771 | 4.3:-28689759 | None:intergenic |
| GCTCCATCTTGGAGCCTGGA+AGG | 0.524851 | 4.3:+28692282 | MS.gene96814:CDS |
| ATTGTTAGGTTTATTGAACT+AGG | 0.530194 | 4.3:+28692260 | MS.gene96814:intron |
| GGAAGAGCGAAGGTTGAATC+GGG | 0.533818 | 4.3:-28689705 | None:intergenic |
| CCTGCGGCATTTGCTGCACA+AGG | 0.540694 | 4.3:+28692722 | MS.gene96814:CDS |
| AAATGCCGCAGGGAGTGCGG+TGG | 0.545674 | 4.3:-28692711 | None:intergenic |
| ATTTATGCCACCTGCTGCAG+TGG | 0.547258 | 4.3:+28692805 | MS.gene96814:CDS |
| TGTGAGGTATCCACTGCAGC+AGG | 0.547849 | 4.3:-28692815 | None:intergenic |
| AGGGTACGAAATGGTTTCCC+GGG | 0.553844 | 4.3:+28689632 | None:intergenic |
| ATGCCGCAGGGAGTGCGGTG+GGG | 0.554371 | 4.3:-28692709 | None:intergenic |
| AGCAAATGCCGCAGGGAGTG+CGG | 0.555070 | 4.3:-28692714 | None:intergenic |
| AAAGTTGAAAGATGCCAACT+CGG | 0.556876 | 4.3:+28692379 | MS.gene96814:CDS |
| GGCGGAGGAAGGAAGAGCGA+AGG | 0.557011 | 4.3:-28689715 | None:intergenic |
| AGTGGGCCAGGTGAAGGCGG+AGG | 0.558235 | 4.3:-28689730 | None:intergenic |
| CTACTAGCTCCAAAGCATGT+CGG | 0.561189 | 4.3:+28692107 | MS.gene96814:CDS |
| CATTGGAAGCAAGGTTGAAG+GGG | 0.566545 | 4.3:-28689758 | None:intergenic |
| AGGCCTTCCAGGCTCCAAGA+TGG | 0.576941 | 4.3:-28692285 | None:intergenic |
| GCTGCACAAGGCCAAGCCCA+TGG | 0.577267 | 4.3:+28692734 | MS.gene96814:CDS |
| AGCGAAGGTTGAATCGGGAA+CGG | 0.583174 | 4.3:-28689700 | None:intergenic |
| AAGAGTCTGGTTCAAAGAAG+AGG | 0.585185 | 4.3:+28691388 | MS.gene96814:CDS |
| TGCTGCAGTGGATACCTCAC+AGG | 0.591418 | 4.3:+28692817 | MS.gene96814:CDS |
| ATTGGAAGCAAGGTTGAAGG+GGG | 0.596778 | 4.3:-28689757 | None:intergenic |
| AAGTTGAAAGATGCCAACTC+GGG | 0.605070 | 4.3:+28692380 | MS.gene96814:CDS |
| CAGACCTGACATTGGAAGCA+AGG | 0.608712 | 4.3:-28689767 | None:intergenic |
| CTTGTGCAGCAAATGCCGCA+GGG | 0.618158 | 4.3:-28692721 | None:intergenic |
| AATGAGTACAGACCTGACAT+TGG | 0.621004 | 4.3:-28689775 | None:intergenic |
| TGAAATTGATGGCTCGTTAG+GGG | 0.622534 | 4.3:+28691350 | MS.gene96814:CDS |
| CCTGATTGATGCTGTCCGAA+TGG | 0.625819 | 4.3:+28692331 | MS.gene96814:CDS |
| AAGGCCTGCCAAAACCGACA+AGG | 0.632388 | 4.3:+28692301 | MS.gene96814:CDS |
| TGACGAGAAACAGAGGCTCA+AGG | 0.635039 | 4.3:+28692622 | MS.gene96814:CDS |
| CGAATGGTGACACAGTTAAG+GGG | 0.650749 | 4.3:+28692347 | MS.gene96814:CDS |
| GAGGTATCCACTGCAGCAGG+TGG | 0.651341 | 4.3:-28692812 | None:intergenic |
| AACTTCGTGACGAGAAACAG+AGG | 0.668282 | 4.3:+28692615 | MS.gene96814:CDS |
| TCGGACAGCATCAATCAGGA+TGG | 0.668544 | 4.3:-28692327 | None:intergenic |
| GTTATCCAGGAGTTGCAATG+TGG | 0.686227 | 4.3:+28692780 | MS.gene96814:CDS |
| GAGCCAGCTTAGGCAACTGG+AGG | 0.695906 | 4.3:-28692854 | None:intergenic |
| TTGGAAGCAAGGTTGAAGGG+GGG | 0.709273 | 4.3:-28689756 | None:intergenic |
| GGGGTAGGCAAGAAACTAGG+TGG | 0.721390 | 4.3:-28692689 | None:intergenic |
| ACGAAGTACATGATCCTGTG+AGG | 0.733239 | 4.3:-28692831 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATGAAAATTATTTCAA+TGG | + | chr4.3:28690237-28690256 | MS.gene96814:intron | 10.0% |
| !! | TTTAAGAAATAAAAATTGAA+GGG | - | chr4.3:28692515-28692534 | None:intergenic | 10.0% |
| !!! | TTTTAAGAAATAAAAATTGA+AGG | - | chr4.3:28692516-28692535 | None:intergenic | 10.0% |
| !! | AATAAGAAATGAGAAAAATA+AGG | - | chr4.3:28690747-28690766 | None:intergenic | 15.0% |
| !! | ATAAATCTCAAATTATCATA+GGG | - | chr4.3:28689931-28689950 | None:intergenic | 15.0% |
| !! | GTATTAAAAAACAAATTTCT+AGG | + | chr4.3:28692580-28692599 | MS.gene96814:intron | 15.0% |
| !! | TATAAATCTCAAATTATCAT+AGG | - | chr4.3:28689932-28689951 | None:intergenic | 15.0% |
| !!! | ATCATTACTCTTATTTAAAA+TGG | - | chr4.3:28690688-28690707 | None:intergenic | 15.0% |
| !!! | TATTTTTCTTTACCTAAAAA+AGG | + | chr4.3:28691482-28691501 | MS.gene96814:intron | 15.0% |
| !!! | TTATTTTTCTCATTTCTTAT+TGG | + | chr4.3:28690746-28690765 | MS.gene96814:intron | 15.0% |
| !! | AAAATTATTTCAATGGAAGT+TGG | + | chr4.3:28690244-28690263 | MS.gene96814:intron | 20.0% |
| !! | AAACTACAAGGAAAAATTAA+TGG | - | chr4.3:28691913-28691932 | None:intergenic | 20.0% |
| !! | AATCATTATTGTAGTATACA+TGG | - | chr4.3:28691679-28691698 | None:intergenic | 20.0% |
| !! | AATTGCACTAATAATTAAGT+TGG | - | chr4.3:28691819-28691838 | None:intergenic | 20.0% |
| !! | ACAAGTAAAACAAAACATAT+TGG | - | chr4.3:28691596-28691615 | None:intergenic | 20.0% |
| !! | AGAAAAGATTAAAGAGTTAA+AGG | + | chr4.3:28692409-28692428 | MS.gene96814:CDS | 20.0% |
| !! | AGAATAAAGATAACATGTAT+AGG | + | chr4.3:28691521-28691540 | MS.gene96814:intron | 20.0% |
| !! | ATGTATACTACAATAATGAT+TGG | + | chr4.3:28691678-28691697 | MS.gene96814:intron | 20.0% |
| !! | ATTTGCATTATGGTATTTAT+AGG | + | chr4.3:28691237-28691256 | MS.gene96814:intron | 20.0% |
| !! | CAAGTAAAACAAAACATATT+GGG | - | chr4.3:28691595-28691614 | None:intergenic | 20.0% |
| !! | CTAACAATGTTCATTATATT+AGG | - | chr4.3:28692248-28692267 | None:intergenic | 20.0% |
| !! | CTAATATAATGAACATTGTT+AGG | + | chr4.3:28692246-28692265 | MS.gene96814:intron | 20.0% |
| !! | TAAAACCCTAATTATGAAAA+GGG | - | chr4.3:28689806-28689825 | None:intergenic | 20.0% |
| !! | TAGGTAAAACTATTTAGAAA+AGG | - | chr4.3:28690422-28690441 | None:intergenic | 20.0% |
| !! | TTAAAACCCTAATTATGAAA+AGG | - | chr4.3:28689807-28689826 | None:intergenic | 20.0% |
| !!! | AAATAGTTTTACCTAAAACT+TGG | + | chr4.3:28690427-28690446 | MS.gene96814:intron | 20.0% |
| !!! | AAATTGTTTAGTTCAATGAA+AGG | - | chr4.3:28691438-28691457 | None:intergenic | 20.0% |
| !!! | AATTGTTTAGTTCAATGAAA+GGG | - | chr4.3:28691437-28691456 | None:intergenic | 20.0% |
| !!! | ATTTTTTGTTTCTTACTTCA+TGG | + | chr4.3:28689869-28689888 | MS.gene96814:intron | 20.0% |
| !!! | TGTTTTCATAACAGTTATAT+AGG | - | chr4.3:28690158-28690177 | None:intergenic | 20.0% |
| !!! | TTTCATAATTAGGGTTTTAA+TGG | + | chr4.3:28689807-28689826 | MS.gene96814:intron | 20.0% |
| !!! | TTTTTCCTTGTAGTTTTTTT+AGG | + | chr4.3:28691917-28691936 | MS.gene96814:intron | 20.0% |
| !!! | TTTTTTGTTTCTTACTTCAT+GGG | + | chr4.3:28689870-28689889 | MS.gene96814:intron | 20.0% |
| ! | AAAACCCTAATTATGAAAAG+GGG | - | chr4.3:28689805-28689824 | None:intergenic | 25.0% |
| ! | AAACTTGTATATTTGTGATG+AGG | + | chr4.3:28690942-28690961 | MS.gene96814:intron | 25.0% |
| ! | AAATAATCAAACCATGCAAA+TGG | - | chr4.3:28690052-28690071 | None:intergenic | 25.0% |
| ! | AATAGAGGATATTTGAATTC+AGG | + | chr4.3:28690366-28690385 | MS.gene96814:intron | 25.0% |
| ! | AATCTCCTAAAGATTTAAAC+AGG | - | chr4.3:28691633-28691652 | None:intergenic | 25.0% |
| ! | ACTACACTACTAAAAAATCT+GGG | - | chr4.3:28691027-28691046 | None:intergenic | 25.0% |
| ! | ACTCCAAAAATCATATCTTA+GGG | + | chr4.3:28692022-28692041 | MS.gene96814:intron | 25.0% |
| ! | ATAGAGGATATTTGAATTCA+GGG | + | chr4.3:28690367-28690386 | MS.gene96814:intron | 25.0% |
| ! | ATCTCCTAAAGATTTAAACA+GGG | - | chr4.3:28691632-28691651 | None:intergenic | 25.0% |
| ! | ATTGTTAGGTTTATTGAACT+AGG | + | chr4.3:28692260-28692279 | MS.gene96814:intron | 25.0% |
| ! | GATTAGAACAATTTGCATTA+TGG | + | chr4.3:28691227-28691246 | MS.gene96814:intron | 25.0% |
| ! | TAGTATACATGGAAAGAAAA+CGG | - | chr4.3:28691668-28691687 | None:intergenic | 25.0% |
| ! | TATCCTCTTGATATAAAACA+TGG | - | chr4.3:28691204-28691223 | None:intergenic | 25.0% |
| ! | TGAAGTCTCAATTTATATTC+AGG | + | chr4.3:28692432-28692451 | MS.gene96814:intron | 25.0% |
| ! | TGACATGTAAATTCATATAG+AGG | - | chr4.3:28691269-28691288 | None:intergenic | 25.0% |
| ! | TGATGCTTAGAATCTTTAAT+CGG | + | chr4.3:28690331-28690350 | MS.gene96814:intron | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | + | chr4.3:28690759-28690778 | MS.gene96814:intron | 25.0% |
| ! | TTTCTTTGTAAATTTGCATG+TGG | + | chr4.3:28692459-28692478 | MS.gene96814:intron | 25.0% |
| !! | ATGTTTTATATCAAGAGGAT+AGG | + | chr4.3:28691203-28691222 | MS.gene96814:intron | 25.0% |
| !! | CAAATATACAAGTTTTGCAA+AGG | - | chr4.3:28690937-28690956 | None:intergenic | 25.0% |
| !! | TGAGTTTTTCATTCAACAAT+AGG | - | chr4.3:28692551-28692570 | None:intergenic | 25.0% |
| !! | TGTTTTATATCAAGAGGATA+GGG | + | chr4.3:28691204-28691223 | MS.gene96814:intron | 25.0% |
| !! | TTAGAAAAGGTTTTTCTTGA+TGG | - | chr4.3:28690409-28690428 | None:intergenic | 25.0% |
| AAAACAATGGAGAGAGAAAA+AGG | + | chr4.3:28690772-28690791 | MS.gene96814:intron | 30.0% | |
| AAACCCTAATTATGAAAAGG+GGG | - | chr4.3:28689804-28689823 | None:intergenic | 30.0% | |
| AACTCCTGGATAACTAATAA+AGG | - | chr4.3:28692774-28692793 | None:intergenic | 30.0% | |
| AAGCAACTAAATCACTTTAC+AGG | - | chr4.3:28690302-28690321 | None:intergenic | 30.0% | |
| AATTCTATCTAGTGAGATAG+GGG | + | chr4.3:28690492-28690511 | MS.gene96814:intron | 30.0% | |
| ACGAATTGGATTAACGATTA+CGG | + | chr4.3:28689660-28689679 | MS.gene96814:CDS | 30.0% | |
| ACTCCTGGATAACTAATAAA+GGG | - | chr4.3:28692773-28692792 | None:intergenic | 30.0% | |
| AGAATCTTTAATCGGAAAAG+CGG | + | chr4.3:28690339-28690358 | MS.gene96814:intron | 30.0% | |
| ATATAGATCATCTGATCCAT+TGG | - | chr4.3:28690466-28690485 | None:intergenic | 30.0% | |
| CAATTCTATCTAGTGAGATA+GGG | + | chr4.3:28690491-28690510 | MS.gene96814:intron | 30.0% | |
| CACTACACTACTAAAAAATC+TGG | - | chr4.3:28691028-28691047 | None:intergenic | 30.0% | |
| CACTCCAAAAATCATATCTT+AGG | + | chr4.3:28692021-28692040 | MS.gene96814:intron | 30.0% | |
| CTATCTCACTAGATAGAATT+GGG | - | chr4.3:28690492-28690511 | None:intergenic | 30.0% | |
| CTCCAAAAATCATATCTTAG+GGG | + | chr4.3:28692023-28692042 | MS.gene96814:intron | 30.0% | |
| CTTGTTAATTTCTTGTTGCA+GGG | + | chr4.3:28692063-28692082 | MS.gene96814:intron | 30.0% | |
| TACAGGTAAGTTTCAACAAT+AGG | - | chr4.3:28690285-28690304 | None:intergenic | 30.0% | |
| TACTCCCTGTTTAAATCTTT+AGG | + | chr4.3:28691625-28691644 | MS.gene96814:intron | 30.0% | |
| TATAGATCATCTGATCCATT+GGG | - | chr4.3:28690465-28690484 | None:intergenic | 30.0% | |
| TCCAAAAATCATATCTTAGG+GGG | + | chr4.3:28692024-28692043 | MS.gene96814:intron | 30.0% | |
| TCTTGTTAATTTCTTGTTGC+AGG | + | chr4.3:28692062-28692081 | MS.gene96814:intron | 30.0% | |
| TTGCACAAACAAAACAAACT+AGG | - | chr4.3:28690968-28690987 | None:intergenic | 30.0% | |
| ! | AAAAATGCAATTTTCCATGG+AGG | + | chr4.3:28690533-28690552 | MS.gene96814:intron | 30.0% |
| ! | GTTTTATATCAAGAGGATAG+GGG | + | chr4.3:28691205-28691224 | MS.gene96814:intron | 30.0% |
| ! | TCCAAAAATGCAATTTTCCA+TGG | + | chr4.3:28690530-28690549 | MS.gene96814:intron | 30.0% |
| ! | TCCATGGAAAATTGCATTTT+TGG | - | chr4.3:28690534-28690553 | None:intergenic | 30.0% |
| !!! | AACCACTTTTTGACAACTTT+TGG | - | chr4.3:28690844-28690863 | None:intergenic | 30.0% |
| !!! | AGTTTGTTTTGTTTGTGCAA+TGG | + | chr4.3:28690968-28690987 | MS.gene96814:intron | 30.0% |
| !!! | CAGATTTTTTAGTAGTGTAG+TGG | + | chr4.3:28691026-28691045 | MS.gene96814:intron | 30.0% |
| !!! | CTAAGTTCTCTACTAGTTTT+AGG | + | chr4.3:28690025-28690044 | MS.gene96814:intron | 30.0% |
| !!! | GTTCCTTGACAATGTTTTTT+AGG | + | chr4.3:28690629-28690648 | MS.gene96814:intron | 30.0% |
| AAAGTTGAAAGATGCCAACT+CGG | + | chr4.3:28692379-28692398 | MS.gene96814:CDS | 35.0% | |
| AACAAGGAAATAGAGAGACA+GGG | - | chr4.3:28692193-28692212 | None:intergenic | 35.0% | |
| AACCCTAATTATGAAAAGGG+GGG | - | chr4.3:28689803-28689822 | None:intergenic | 35.0% | |
| AATCAAGATGACAAGTCCTA+AGG | + | chr4.3:28691858-28691877 | MS.gene96814:intron | 35.0% | |
| ACAAATGTACCCATGTTATG+AGG | - | chr4.3:28691158-28691177 | None:intergenic | 35.0% | |
| ACTAGACATCTGTTAGTTGA+AGG | - | chr4.3:28691784-28691803 | None:intergenic | 35.0% | |
| AGAAAGAATGTTGAGGTGAA+TGG | + | chr4.3:28690197-28690216 | MS.gene96814:intron | 35.0% | |
| AGTAGTCAATGCTACAAGAT+GGG | - | chr4.3:28691966-28691985 | None:intergenic | 35.0% | |
| ATATGGACACAAAAGCAACA+AGG | - | chr4.3:28692209-28692228 | None:intergenic | 35.0% | |
| CCAATTCTATCTAGTGAGAT+AGG | + | chr4.3:28690490-28690509 | MS.gene96814:intron | 35.0% | |
| CCTATCTCACTAGATAGAAT+TGG | - | chr4.3:28690493-28690512 | None:intergenic | 35.0% | |
| CTAAAACTTGGTTTCTGCTA+GGG | + | chr4.3:28690439-28690458 | MS.gene96814:intron | 35.0% | |
| CTAGTAGAGAACTTAGTGTT+AGG | - | chr4.3:28690021-28690040 | None:intergenic | 35.0% | |
| GAAAGAATGTTGAGGTGAAT+GGG | + | chr4.3:28690198-28690217 | MS.gene96814:intron | 35.0% | |
| GATATTTGAATTCAGGGTAG+AGG | + | chr4.3:28690373-28690392 | MS.gene96814:intron | 35.0% | |
| GATTGGAGACTGAGATTAAA+AGG | + | chr4.3:28691695-28691714 | MS.gene96814:intron | 35.0% | |
| GTACCCTTTATTAGTTATCC+AGG | + | chr4.3:28692767-28692786 | MS.gene96814:CDS | 35.0% | |
| GTCCAAAAGTTGTCAAAAAG+TGG | + | chr4.3:28690839-28690858 | MS.gene96814:intron | 35.0% | |
| TACCCATGTTATGAGGAATT+GGG | - | chr4.3:28691151-28691170 | None:intergenic | 35.0% | |
| TAGTAGTGTAGTGGTTTGAA+TGG | + | chr4.3:28691035-28691054 | MS.gene96814:intron | 35.0% | |
| TATTCAAACCCCAAAATGAC+TGG | + | chr4.3:28691995-28692014 | MS.gene96814:intron | 35.0% | |
| TCATAACATGGGTACATTTG+TGG | + | chr4.3:28691157-28691176 | MS.gene96814:intron | 35.0% | |
| TGGAGTAGAAAATGAATTGC+TGG | + | chr4.3:28690988-28691007 | MS.gene96814:intron | 35.0% | |
| ! | AGTTGGCATCTTTCAACTTT+TGG | - | chr4.3:28692379-28692398 | None:intergenic | 35.0% |
| ! | GCACCATGTTTTATATCAAG+AGG | + | chr4.3:28691198-28691217 | MS.gene96814:intron | 35.0% |
| ! | GTTGGCATCTTTCAACTTTT+GGG | - | chr4.3:28692378-28692397 | None:intergenic | 35.0% |
| ! | GTTGGCCTAAAAAAACTACA+AGG | - | chr4.3:28691925-28691944 | None:intergenic | 35.0% |
| ! | GTTTAGTTCAATGAAAGGGA+AGG | - | chr4.3:28691433-28691452 | None:intergenic | 35.0% |
| ! | TAATCCAATTCGTGTTTTCC+CGG | - | chr4.3:28689653-28689672 | None:intergenic | 35.0% |
| ! | TCCCCCTAAGATATGATTTT+TGG | - | chr4.3:28692028-28692047 | None:intergenic | 35.0% |
| !!! | CCTTGACAATGTTTTTTAGG+CGG | + | chr4.3:28690632-28690651 | MS.gene96814:intron | 35.0% |
| !!! | CTTGACAATGTTTTTTAGGC+GGG | + | chr4.3:28690633-28690652 | MS.gene96814:intron | 35.0% |
| !!! | GTTTTTTTAGGCCAACTTTC+CGG | + | chr4.3:28691929-28691948 | MS.gene96814:intron | 35.0% |
| !!! | TAGTTTTAGGTCCATTTGCA+TGG | + | chr4.3:28690038-28690057 | MS.gene96814:intron | 35.0% |
| AACATGGGTACATTTGTGGT+TGG | + | chr4.3:28691161-28691180 | MS.gene96814:intron | 40.0% | |
| AAGATGGGGAAAGATAATGC+CGG | - | chr4.3:28691951-28691970 | None:intergenic | 40.0% | |
| AAGTTGAAAGATGCCAACTC+GGG | + | chr4.3:28692380-28692399 | MS.gene96814:CDS | 40.0% | |
| AATGAGTACAGACCTGACAT+TGG | - | chr4.3:28689778-28689797 | None:intergenic | 40.0% | |
| ACAAGGAAATAGAGAGACAG+GGG | - | chr4.3:28692192-28692211 | None:intergenic | 40.0% | |
| ACATTGGAAGCAAGGTTGAA+GGG | - | chr4.3:28689762-28689781 | None:intergenic | 40.0% | |
| ACCCATGTTATGAGGAATTG+GGG | - | chr4.3:28691150-28691169 | None:intergenic | 40.0% | |
| ACCCTAATTATGAAAAGGGG+GGG | - | chr4.3:28689802-28689821 | None:intergenic | 40.0% | |
| AGAGAGAAAAAGGAAGAGAG+AGG | + | chr4.3:28690782-28690801 | MS.gene96814:intron | 40.0% | |
| CAACAAGGAAATAGAGAGAC+AGG | - | chr4.3:28692194-28692213 | None:intergenic | 40.0% | |
| CAGTAGTCAATGCTACAAGA+TGG | - | chr4.3:28691967-28691986 | None:intergenic | 40.0% | |
| CCGCCTAAAAAACATTGTCA+AGG | - | chr4.3:28690635-28690654 | None:intergenic | 40.0% | |
| CCTAAAACTTGGTTTCTGCT+AGG | + | chr4.3:28690438-28690457 | MS.gene96814:intron | 40.0% | |
| CTGAGATTAAAAGGCAGTGT+TGG | + | chr4.3:28691704-28691723 | MS.gene96814:intron | 40.0% | |
| GAAAGATAATGCCGGAAAGT+TGG | - | chr4.3:28691943-28691962 | None:intergenic | 40.0% | |
| GATAACATATGCAACGCCTT+AGG | - | chr4.3:28691877-28691896 | None:intergenic | 40.0% | |
| GATTTAAACAGGGAGTAGCT+AGG | - | chr4.3:28691622-28691641 | None:intergenic | 40.0% | |
| GCGAACAAGAAAGAATGTTG+AGG | + | chr4.3:28690190-28690209 | MS.gene96814:intron | 40.0% | |
| GTACCCATGTTATGAGGAAT+TGG | - | chr4.3:28691152-28691171 | None:intergenic | 40.0% | |
| GTAGTCAATGCTACAAGATG+GGG | - | chr4.3:28691965-28691984 | None:intergenic | 40.0% | |
| GTTGAGTATGGGAAACTTAG+TGG | + | chr4.3:28690657-28690676 | MS.gene96814:intron | 40.0% | |
| TAGTGTAGTGGTTTGAATGG+AGG | + | chr4.3:28691038-28691057 | MS.gene96814:intron | 40.0% | |
| TAGTTCAATGAAAGGGAAGG+AGG | - | chr4.3:28691430-28691449 | None:intergenic | 40.0% | |
| TATTGAACTAGGCTCCATCT+TGG | + | chr4.3:28692271-28692290 | MS.gene96814:CDS | 40.0% | |
| TCCCCAATTCCTCATAACAT+GGG | + | chr4.3:28691146-28691165 | MS.gene96814:intron | 40.0% | |
| TGTTGACATGTGAATGGGAA+AGG | + | chr4.3:28690569-28690588 | MS.gene96814:intron | 40.0% | |
| TTCCCCAATTCCTCATAACA+TGG | + | chr4.3:28691145-28691164 | MS.gene96814:intron | 40.0% | |
| TTGAATTCAGGGTAGAGGAA+AGG | + | chr4.3:28690378-28690397 | MS.gene96814:intron | 40.0% | |
| TTTGTGTCCATATGTAGCTC+TGG | + | chr4.3:28692216-28692235 | MS.gene96814:intron | 40.0% | |
| ! | AAGAGTCTGGTTCAAAGAAG+AGG | + | chr4.3:28691388-28691407 | MS.gene96814:CDS | 40.0% |
| ! | AATCCAATTCGTGTTTTCCC+GGG | - | chr4.3:28689652-28689671 | None:intergenic | 40.0% |
| ! | ATAGTCCTCGATTTGTCTCA+TGG | + | chr4.3:28690074-28690093 | MS.gene96814:intron | 40.0% |
| ! | CCTAGCAGAAACCAAGTTTT+AGG | - | chr4.3:28690441-28690460 | None:intergenic | 40.0% |
| ! | CTGAAATTGATGGCTCGTTA+GGG | + | chr4.3:28691349-28691368 | MS.gene96814:CDS | 40.0% |
| ! | TCCCCCCCTTTTCATAATTA+GGG | + | chr4.3:28689798-28689817 | MS.gene96814:intron | 40.0% |
| ! | TGAAATTGATGGCTCGTTAG+GGG | + | chr4.3:28691350-28691369 | MS.gene96814:CDS | 40.0% |
| ! | TGGAGTGAATCCAGTCATTT+TGG | - | chr4.3:28692008-28692027 | None:intergenic | 40.0% |
| ! | TTCCCCCCCTTTTCATAATT+AGG | + | chr4.3:28689797-28689816 | MS.gene96814:intron | 40.0% |
| !! | GAGTGAATCCAGTCATTTTG+GGG | - | chr4.3:28692006-28692025 | None:intergenic | 40.0% |
| !! | GGAGTGAATCCAGTCATTTT+GGG | - | chr4.3:28692007-28692026 | None:intergenic | 40.0% |
| !!! | CACACGCTGATTCCTTTTTT+AGG | - | chr4.3:28691497-28691516 | None:intergenic | 40.0% |
| AACTTCGTGACGAGAAACAG+AGG | + | chr4.3:28692615-28692634 | MS.gene96814:CDS | 45.0% | |
| AATTGCCACATTGCAACTCC+TGG | - | chr4.3:28692788-28692807 | None:intergenic | 45.0% | |
| ACGAAGTACATGATCCTGTG+AGG | - | chr4.3:28692834-28692853 | None:intergenic | 45.0% | |
| AGAATGTTGAGGTGAATGGG+TGG | + | chr4.3:28690201-28690220 | MS.gene96814:intron | 45.0% | |
| AGGAAGAGCGAAGGTTGAAT+CGG | - | chr4.3:28689709-28689728 | None:intergenic | 45.0% | |
| AGTGCTCCTATTTGTATCGC+TGG | - | chr4.3:28691756-28691775 | None:intergenic | 45.0% | |
| ATTGGAAGCAAGGTTGAAGG+GGG | - | chr4.3:28689760-28689779 | None:intergenic | 45.0% | |
| CAAGGCAGAGAAAGAGAAGT+TGG | + | chr4.3:28692640-28692659 | MS.gene96814:CDS | 45.0% | |
| CATTGGAAGCAAGGTTGAAG+GGG | - | chr4.3:28689761-28689780 | None:intergenic | 45.0% | |
| CCCTTAACTGTGTCACCATT+CGG | - | chr4.3:28692349-28692368 | None:intergenic | 45.0% | |
| CCGAATGGTGACACAGTTAA+GGG | + | chr4.3:28692346-28692365 | MS.gene96814:CDS | 45.0% | |
| CGAATGGTGACACAGTTAAG+GGG | + | chr4.3:28692347-28692366 | MS.gene96814:CDS | 45.0% | |
| CGGAAAAGCGGATCAAATAG+AGG | + | chr4.3:28690351-28690370 | MS.gene96814:intron | 45.0% | |
| CTACTAGCTCCAAAGCATGT+CGG | + | chr4.3:28692107-28692126 | MS.gene96814:CDS | 45.0% | |
| CTCGTGCTAGATGGATGAAA+TGG | + | chr4.3:28690098-28690117 | MS.gene96814:intron | 45.0% | |
| GACATTGGAAGCAAGGTTGA+AGG | - | chr4.3:28689763-28689782 | None:intergenic | 45.0% | |
| GTACACACCAGAGCTACATA+TGG | - | chr4.3:28692226-28692245 | None:intergenic | 45.0% | |
| GTTATCCAGGAGTTGCAATG+TGG | + | chr4.3:28692780-28692799 | MS.gene96814:CDS | 45.0% | |
| TACTAGCTCCAAAGCATGTC+GGG | + | chr4.3:28692108-28692127 | MS.gene96814:CDS | 45.0% | |
| TCAACCTTGCTTCCAATGTC+AGG | + | chr4.3:28689763-28689782 | MS.gene96814:CDS | 45.0% | |
| TCCGAATGGTGACACAGTTA+AGG | + | chr4.3:28692345-28692364 | MS.gene96814:CDS | 45.0% | |
| TCCTATTTGTATCGCTGGCA+AGG | - | chr4.3:28691751-28691770 | None:intergenic | 45.0% | |
| TCTGACAGTCTCAAAGAGTC+TGG | + | chr4.3:28691375-28691394 | MS.gene96814:CDS | 45.0% | |
| TTTAGGCGGGAGTTGAGTAT+GGG | + | chr4.3:28690646-28690665 | MS.gene96814:intron | 45.0% | |
| TTTCCCGGGAAAACACGAAT+TGG | + | chr4.3:28689646-28689665 | MS.gene96814:CDS | 45.0% | |
| ! | CTTTTCTTGAAGACCCGAGT+TGG | - | chr4.3:28692396-28692415 | None:intergenic | 45.0% |
| ! | GCTGAAATTGATGGCTCGTT+AGG | + | chr4.3:28691348-28691367 | MS.gene96814:CDS | 45.0% |
| ! | GCTGCTAGTGCTGAAATTGA+TGG | + | chr4.3:28691339-28691358 | MS.gene96814:intron | 45.0% |
| ! | TGCAATTTTCCATGGAGGCA+TGG | + | chr4.3:28690538-28690557 | MS.gene96814:intron | 45.0% |
| ! | TTCAATGGAAGTTGGTCTGC+AGG | + | chr4.3:28690252-28690271 | MS.gene96814:intron | 45.0% |
| ! | TTTTAGGCGGGAGTTGAGTA+TGG | + | chr4.3:28690645-28690664 | MS.gene96814:intron | 45.0% |
| !! | AGGGTACCAATTTGTTGCCA+TGG | - | chr4.3:28692754-28692773 | None:intergenic | 45.0% |
| !! | GCAATTTTCCATGGAGGCAT+GGG | + | chr4.3:28690539-28690558 | MS.gene96814:intron | 45.0% |
| !! | GCTGGTGTTGACATGTGAAT+GGG | + | chr4.3:28690564-28690583 | MS.gene96814:intron | 45.0% |
| !! | GGGTACCAATTTGTTGCCAT+GGG | - | chr4.3:28692753-28692772 | None:intergenic | 45.0% |
| !! | TGCTGGTGTTGACATGTGAA+TGG | + | chr4.3:28690563-28690582 | MS.gene96814:intron | 45.0% |
| AGCGAAGGTTGAATCGGGAA+CGG | - | chr4.3:28689703-28689722 | None:intergenic | 50.0% | |
| ATTGGGGAACATGCTACAGC+TGG | - | chr4.3:28691134-28691153 | None:intergenic | 50.0% | |
| ATTTATGCCACCTGCTGCAG+TGG | + | chr4.3:28692805-28692824 | MS.gene96814:CDS | 50.0% | |
| CAACTTCTCCCGACATGCTT+TGG | - | chr4.3:28692119-28692138 | None:intergenic | 50.0% | |
| CAGACCTGACATTGGAAGCA+AGG | - | chr4.3:28689770-28689789 | None:intergenic | 50.0% | |
| CCAAGCCCATGGCAACAAAT+TGG | + | chr4.3:28692745-28692764 | MS.gene96814:CDS | 50.0% | |
| CCATTCGGACAGCATCAATC+AGG | - | chr4.3:28692334-28692353 | None:intergenic | 50.0% | |
| CCTGATTGATGCTGTCCGAA+TGG | + | chr4.3:28692331-28692350 | MS.gene96814:CDS | 50.0% | |
| CGAGTCCATGAGACAAATCG+AGG | - | chr4.3:28690082-28690101 | None:intergenic | 50.0% | |
| GCCTTGCCAGCGATACAAAT+AGG | + | chr4.3:28691747-28691766 | MS.gene96814:intron | 50.0% | |
| GGAAATAGAGAGACAGGGGA+AGG | - | chr4.3:28692188-28692207 | None:intergenic | 50.0% | |
| GGAAGAGCGAAGGTTGAATC+GGG | - | chr4.3:28689708-28689727 | None:intergenic | 50.0% | |
| TCGGACAGCATCAATCAGGA+TGG | - | chr4.3:28692330-28692349 | None:intergenic | 50.0% | |
| TCTCATGGACTCGTGCTAGA+TGG | + | chr4.3:28690089-28690108 | MS.gene96814:intron | 50.0% | |
| TGACGAGAAACAGAGGCTCA+AGG | + | chr4.3:28692622-28692641 | MS.gene96814:CDS | 50.0% | |
| TTGGAAGCAAGGTTGAAGGG+GGG | - | chr4.3:28689759-28689778 | None:intergenic | 50.0% | |
| ! | AATCAGGATGGCAGCCTTGT+CGG | - | chr4.3:28692318-28692337 | None:intergenic | 50.0% |
| !! | CCAATTTGTTGCCATGGGCT+TGG | - | chr4.3:28692748-28692767 | None:intergenic | 50.0% |
| AAGGCCTGCCAAAACCGACA+AGG | + | chr4.3:28692301-28692320 | MS.gene96814:CDS | 55.0% | |
| CTTGTGCAGCAAATGCCGCA+GGG | - | chr4.3:28692724-28692743 | None:intergenic | 55.0% | |
| GAGACAGGGGAAGGTAGACA+AGG | - | chr4.3:28692179-28692198 | None:intergenic | 55.0% | |
| GCGAAGGTTGAATCGGGAAC+GGG | - | chr4.3:28689702-28689721 | None:intergenic | 55.0% | |
| GGGGTAGGCAAGAAACTAGG+TGG | - | chr4.3:28692692-28692711 | None:intergenic | 55.0% | |
| GTGGGGGTAGGCAAGAAACT+AGG | - | chr4.3:28692695-28692714 | None:intergenic | 55.0% | |
| TGCTGCAGTGGATACCTCAC+AGG | + | chr4.3:28692817-28692836 | MS.gene96814:CDS | 55.0% | |
| TGGTTTCTGCTAGGGCCCAA+TGG | + | chr4.3:28690447-28690466 | MS.gene96814:intron | 55.0% | |
| ! | TGTGAGGTATCCACTGCAGC+AGG | - | chr4.3:28692818-28692837 | None:intergenic | 55.0% |
| !!! | GATGGCAGCCTTGTCGGTTT+TGG | - | chr4.3:28692312-28692331 | None:intergenic | 55.0% |
| AAGGTTGAAGGGGGGCTGAG+TGG | - | chr4.3:28689751-28689770 | None:intergenic | 60.0% | |
| AGCAAATGCCGCAGGGAGTG+CGG | - | chr4.3:28692717-28692736 | None:intergenic | 60.0% | |
| AGGCCTTCCAGGCTCCAAGA+TGG | - | chr4.3:28692288-28692307 | None:intergenic | 60.0% | |
| AGGTTGAAGGGGGGCTGAGT+GGG | - | chr4.3:28689750-28689769 | None:intergenic | 60.0% | |
| CCTTGTGCAGCAAATGCCGC+AGG | - | chr4.3:28692725-28692744 | None:intergenic | 60.0% | |
| CTAGGCTCCATCTTGGAGCC+TGG | + | chr4.3:28692278-28692297 | MS.gene96814:CDS | 60.0% | |
| GCTCCATCTTGGAGCCTGGA+AGG | + | chr4.3:28692282-28692301 | MS.gene96814:CDS | 60.0% | |
| TTCCTTCCTCCGCCTTCACC+TGG | + | chr4.3:28689724-28689743 | MS.gene96814:CDS | 60.0% | |
| ! | CCTGCGGCATTTGCTGCACA+AGG | + | chr4.3:28692722-28692741 | MS.gene96814:CDS | 60.0% |
| ! | GAGGTATCCACTGCAGCAGG+TGG | - | chr4.3:28692815-28692834 | None:intergenic | 60.0% |
| !! | TCGGTTTTGGCAGGCCTTCC+AGG | - | chr4.3:28692299-28692318 | None:intergenic | 60.0% |
| !!! | GCAGCCTTGTCGGTTTTGGC+AGG | - | chr4.3:28692308-28692327 | None:intergenic | 60.0% |
| ACCAGCAGCCCATGCCTCCA+TGG | - | chr4.3:28690550-28690569 | None:intergenic | 65.0% | |
| CTGAGTGGGCCAGGTGAAGG+CGG | - | chr4.3:28689736-28689755 | None:intergenic | 65.0% | |
| GCTGCACAAGGCCAAGCCCA+TGG | + | chr4.3:28692734-28692753 | MS.gene96814:CDS | 65.0% | |
| GGCGGAGGAAGGAAGAGCGA+AGG | - | chr4.3:28689718-28689737 | None:intergenic | 65.0% | |
| ! | AAATGCCGCAGGGAGTGCGG+TGG | - | chr4.3:28692714-28692733 | None:intergenic | 65.0% |
| ! | AATGCCGCAGGGAGTGCGGT+GGG | - | chr4.3:28692713-28692732 | None:intergenic | 65.0% |
| ! | TCCATGGAGGCATGGGCTGC+TGG | + | chr4.3:28690546-28690565 | MS.gene96814:intron | 65.0% |
| AGTGGGCCAGGTGAAGGCGG+AGG | - | chr4.3:28689733-28689752 | None:intergenic | 70.0% | |
| GGCCAGGTGAAGGCGGAGGA+AGG | - | chr4.3:28689729-28689748 | None:intergenic | 70.0% | |
| GGGCTGAGTGGGCCAGGTGA+AGG | - | chr4.3:28689739-28689758 | None:intergenic | 70.0% | |
| TACCCCCACCGCACTCCCTG+CGG | + | chr4.3:28692706-28692725 | MS.gene96814:CDS | 70.0% | |
| ! | ATGCCGCAGGGAGTGCGGTG+GGG | - | chr4.3:28692712-28692731 | None:intergenic | 70.0% |
| GAAGGGGGGCTGAGTGGGCC+AGG | - | chr4.3:28689745-28689764 | None:intergenic | 75.0% | |
| ! | GCAGGGAGTGCGGTGGGGGT+AGG | - | chr4.3:28692707-28692726 | None:intergenic | 75.0% |
| ! | TGCCGCAGGGAGTGCGGTGG+GGG | - | chr4.3:28692711-28692730 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 28689642 | 28692868 | 28689642 | ID=MS.gene96814 |
| chr4.3 | mRNA | 28689642 | 28692868 | 28689642 | ID=MS.gene96814.t1;Parent=MS.gene96814 |
| chr4.3 | exon | 28689642 | 28689784 | 28689642 | ID=MS.gene96814.t1.exon1;Parent=MS.gene96814.t1 |
| chr4.3 | CDS | 28689642 | 28689784 | 28689642 | ID=cds.MS.gene96814.t1;Parent=MS.gene96814.t1 |
| chr4.3 | exon | 28691347 | 28691409 | 28691347 | ID=MS.gene96814.t1.exon2;Parent=MS.gene96814.t1 |
| chr4.3 | CDS | 28691347 | 28691409 | 28691347 | ID=cds.MS.gene96814.t1;Parent=MS.gene96814.t1 |
| chr4.3 | exon | 28692084 | 28692161 | 28692084 | ID=MS.gene96814.t1.exon3;Parent=MS.gene96814.t1 |
| chr4.3 | CDS | 28692084 | 28692161 | 28692084 | ID=cds.MS.gene96814.t1;Parent=MS.gene96814.t1 |
| chr4.3 | exon | 28692268 | 28692430 | 28692268 | ID=MS.gene96814.t1.exon4;Parent=MS.gene96814.t1 |
| chr4.3 | CDS | 28692268 | 28692430 | 28692268 | ID=cds.MS.gene96814.t1;Parent=MS.gene96814.t1 |
| chr4.3 | exon | 28692602 | 28692868 | 28692602 | ID=MS.gene96814.t1.exon5;Parent=MS.gene96814.t1 |
| chr4.3 | CDS | 28692602 | 28692868 | 28692602 | ID=cds.MS.gene96814.t1;Parent=MS.gene96814.t1 |
| Gene Sequence |
| Protein sequence |
