AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene97459


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97459.t1 MTR_0178s0030 94.518 529 25 1 1 525 1 529 0.0 954
MS.gene97459.t1 MTR_4g025420 37.621 412 224 6 132 525 23 419 1.07e-87 276
MS.gene97459.t1 MTR_8g087400 34.772 394 226 7 141 519 82 459 3.81e-64 216
MS.gene97459.t1 MTR_8g059485 35.052 388 228 9 141 519 65 437 1.37e-60 206
MS.gene97459.t1 MTR_8g059485 35.052 388 228 9 141 519 74 446 1.71e-60 206
MS.gene97459.t1 MTR_2g075910 29.828 466 291 10 74 518 3 453 9.43e-56 194
MS.gene97459.t1 MTR_3g462150 29.323 399 246 7 141 518 94 477 2.49e-44 163
MS.gene97459.t1 MTR_5g075180 28.392 398 242 7 133 521 79 442 2.77e-44 162
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97459.t1 AT3G60680 53.077 520 193 8 12 519 14 494 1.52e-179 514
MS.gene97459.t1 AT2G45260 39.031 392 215 5 141 519 39 419 2.34e-89 281
MS.gene97459.t1 AT1G53380 34.596 396 228 8 141 519 70 451 5.89e-63 213
MS.gene97459.t1 AT1G53380 34.596 396 228 8 141 519 70 451 5.89e-63 213
MS.gene97459.t1 AT1G53380 34.596 396 228 8 141 519 70 451 5.89e-63 213
MS.gene97459.t1 AT1G53380 34.596 396 228 8 141 519 70 451 5.89e-63 213
MS.gene97459.t1 AT1G53380 34.596 396 228 8 141 519 70 451 5.89e-63 213
MS.gene97459.t1 AT3G14870 31.221 426 260 8 114 522 56 465 3.10e-59 203
MS.gene97459.t1 AT3G14870 31.221 426 260 8 114 522 56 465 3.10e-59 203
MS.gene97459.t1 AT3G14870 31.221 426 260 8 114 522 56 465 3.10e-59 203
MS.gene97459.t1 AT3G14870 31.221 426 260 8 114 522 60 469 3.50e-59 203
MS.gene97459.t1 AT3G14870 31.221 426 260 8 114 522 57 466 3.59e-59 203
MS.gene97459.t1 AT1G29300 30.789 393 230 7 141 519 88 452 2.47e-50 179
MS.gene97459.t1 AT4G34080 35.357 280 154 5 141 406 15 281 1.57e-48 169
MS.gene97459.t1 AT2G30380 30.529 416 229 10 115 519 45 411 7.11e-46 166
MS.gene97459.t1 AT5G58960 28.537 410 244 9 141 518 88 480 9.87e-44 162
MS.gene97459.t1 AT5G58960 28.537 410 244 9 141 518 88 480 9.87e-44 162
MS.gene97459.t1 AT5G58960 28.537 410 244 9 141 518 163 555 1.42e-43 162
MS.gene97459.t1 AT4G33320 35.556 270 146 6 141 395 15 271 9.03e-42 152
MS.gene97459.t1 AT4G36100 40.860 93 53 1 141 231 15 107 2.99e-14 72.8
MS.gene97459.t1 AT2G32130 30.000 120 83 1 141 260 36 154 1.88e-11 62.8

Find 97 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAAAGTTGTGTACAAATT+AGG 0.125406 7.3:-60084507 None:intergenic
AGGAAAGCGGGGTGGGATTT+AGG 0.182417 7.3:+60084822 MS.gene97459:CDS
AGATCGTGCGACGTCGTTTC+GGG 0.231429 7.3:-60084324 None:intergenic
AGATCGAACGACGTCGTTTC+GGG 0.242209 7.3:-60084246 None:intergenic
GGAAGAGGAGGGTGTCGTTT+TGG 0.246195 7.3:-60084178 None:intergenic
TGTTTGTTTAGGGATGTTTC+AGG 0.249312 7.3:+60084920 MS.gene97459:CDS
GGACGTGTGCGGTTTGTAAT+TGG 0.271045 7.3:-60084395 None:intergenic
TCGTTTCGGGTAGTGCTAAT+TGG 0.273993 7.3:-60084233 None:intergenic
ACCTTTGCCCTTCCCTTATT+CGG 0.290519 7.3:-60085392 None:intergenic
GAAAAGTTGTGTACAAATTA+GGG 0.293873 7.3:-60084506 None:intergenic
GGTAAACGACGGTGTCGTTT+TGG 0.315847 7.3:-60084205 None:intergenic
GGAAGAAGACGGTGTCGTTT+TGG 0.316956 7.3:-60084130 None:intergenic
GGCGAATTTCTGAAACATTT+CGG 0.321321 7.3:-60083968 None:intergenic
TAGATCGTGCGACGTCGTTT+CGG 0.327779 7.3:-60084325 None:intergenic
TTGGGATGGCTAGCTCGATA+TGG 0.335510 7.3:+60085255 MS.gene97459:CDS
GAGGTTAACCTGGCCGAATA+AGG 0.343519 7.3:+60085379 MS.gene97459:CDS
TTGAGGTTGTTTGTTATTGT+TGG 0.350674 7.3:-60083941 None:intergenic
TGTAAACGACGGTGTCGTTT+TGG 0.359861 7.3:-60084283 None:intergenic
GAGATCGAACGACGTCGTTT+CGG 0.366615 7.3:-60084247 None:intergenic
TGTCTAAGAAGCTTTGTAAT+GGG 0.369481 7.3:+60084691 MS.gene97459:CDS
ATCGATCTTCGCCGCCGTTT+CGG 0.375334 7.3:+60084353 MS.gene97459:CDS
AGCGGGGTGGGATTTAGGTT+TGG 0.395552 7.3:+60084827 MS.gene97459:CDS
GGCTGCGAATGCTGTTCATC+CGG 0.397718 7.3:+60084848 MS.gene97459:CDS
GGGTGAAGAGGGTGTCGTTT+TGG 0.400345 7.3:-60084157 None:intergenic
TTGTTCTATGAGGCATTTGT+TGG 0.411551 7.3:+60085236 MS.gene97459:CDS
TGCGACGTCGTTTCGGGTAG+TGG 0.414451 7.3:-60084318 None:intergenic
GGAATTGCTTAGTATTCATC+CGG 0.418751 7.3:+60085088 MS.gene97459:CDS
CGTGTCGAATCGATTGCAAT+TGG 0.423270 7.3:+60084593 MS.gene97459:CDS
TAGTTGTTTGAAGCAATTGT+TGG 0.431050 7.3:+60085043 MS.gene97459:CDS
TGAGGTTGTTTGTTATTGTT+GGG 0.431892 7.3:-60083940 None:intergenic
TTGGTCGGTGATGATTTCTT+CGG 0.436152 7.3:-60084079 None:intergenic
TGCCCTTCCCTTATTCGGCC+AGG 0.437856 7.3:-60085387 None:intergenic
TTATGTAAGTAGTTTCTGTT+TGG 0.438980 7.3:+60085472 MS.gene97459:CDS
GAAGTTGGATGAGGTTCAAA+AGG 0.439815 7.3:+60084656 MS.gene97459:CDS
TTGTCTAAGAAGCTTTGTAA+TGG 0.453436 7.3:+60084690 MS.gene97459:CDS
CAGAGTAAGTTGAGAACACT+AGG 0.459927 7.3:+60084567 MS.gene97459:CDS
GTTTGTTTAGGGATGTTTCA+GGG 0.464560 7.3:+60084921 MS.gene97459:CDS
AGGTTAACCTGGCCGAATAA+GGG 0.474296 7.3:+60085380 MS.gene97459:CDS
GGGTAGTGCTAATTGGTTTG+AGG 0.477165 7.3:-60084226 None:intergenic
TTTGATGAGGAAAGCGGGGT+GGG 0.484462 7.3:+60084815 MS.gene97459:CDS
CTATGAGGCATTTGTTGGGA+TGG 0.485726 7.3:+60085241 MS.gene97459:CDS
AAAATCGACGACTCCATTGA+AGG 0.490608 7.3:-60085161 None:intergenic
ATAAGGGAAGGGCAAAGGTC+GGG 0.494657 7.3:+60085396 MS.gene97459:CDS
GTCGTTGAGTTTGTTCTATG+AGG 0.503096 7.3:+60085226 MS.gene97459:CDS
TGTTCTATGAGGCATTTGTT+GGG 0.504434 7.3:+60085237 MS.gene97459:CDS
GTCGGTGATGATTTCTTCGG+TGG 0.507256 7.3:-60084076 None:intergenic
ATTGGTTTGATGAGGAAAGC+GGG 0.509874 7.3:+60084810 MS.gene97459:CDS
GTCTTCATTGGAAGCTGAAG+TGG 0.511850 7.3:+60084536 MS.gene97459:CDS
ACGAAGCAGTGTTGAATTCG+TGG 0.526031 7.3:+60085201 MS.gene97459:CDS
CGAAGCTTCGAAAGCCGAAA+CGG 0.528599 7.3:-60084367 None:intergenic
TGAAACATTTCGGAGATTTG+AGG 0.528680 7.3:-60083958 None:intergenic
GCTGCGAATGCTGTTCATCC+GGG 0.530190 7.3:+60084849 MS.gene97459:CDS
AAGTTGGATGAGGTTCAAAA+GGG 0.531326 7.3:+60084657 MS.gene97459:CDS
TATCTCCACCGCAGGATCAA+AGG 0.540252 7.3:-60085300 None:intergenic
GAGACTAATCCATCCTTCAA+TGG 0.540903 7.3:+60085148 MS.gene97459:CDS
GCTTCCAATGAAGACCCAAA+TGG 0.542057 7.3:-60084528 None:intergenic
GATGAGGAAGAAGTTGGATG+AGG 0.548856 7.3:+60084647 MS.gene97459:CDS
GAGATATTTCAAGTGGAAAG+AGG 0.553599 7.3:+60085317 MS.gene97459:CDS
GTTTGATGAGGAAAGCGGGG+TGG 0.554497 7.3:+60084814 MS.gene97459:CDS
GAAGGTAGTTATTCAATCGC+AGG 0.557620 7.3:+60085448 MS.gene97459:CDS
TGAAATAAGCACTTTATCAG+TGG 0.565385 7.3:-60084442 None:intergenic
GAAGAAGAATTGACGTCGAA+TGG 0.568449 7.3:+60084987 MS.gene97459:CDS
GCCGAATAAGGGAAGGGCAA+AGG 0.577715 7.3:+60085391 MS.gene97459:CDS
ACTTGAAATATCTCCACCGC+AGG 0.580613 7.3:-60085308 None:intergenic
GATTGGTTTGATGAGGAAAG+CGG 0.584028 7.3:+60084809 MS.gene97459:CDS
AATAAGGGAAGGGCAAAGGT+CGG 0.590403 7.3:+60085395 MS.gene97459:CDS
TTTGCATGATGGGTTTAAAG+CGG 0.591389 7.3:+60084764 MS.gene97459:CDS
GAATTGCTTAGTATTCATCC+GGG 0.593506 7.3:+60085089 MS.gene97459:CDS
GGAATTCTCCATGGTATACA+TGG 0.594647 7.3:+60085343 MS.gene97459:CDS
GCATGTGTCTAGTAATCCGA+TGG 0.594832 7.3:+60085067 MS.gene97459:CDS
TGATTTCTTCGGTGGAGTCG+AGG 0.595840 7.3:-60084068 None:intergenic
TTCGTCGTTGAAGAATTCGA+AGG 0.600535 7.3:-60084010 None:intergenic
TGCGGTGGAGATATTTCAAG+TGG 0.606922 7.3:+60085310 MS.gene97459:CDS
CACATCATCCATGTATACCA+TGG 0.608257 7.3:-60085351 None:intergenic
TAACCTGGCCGAATAAGGGA+AGG 0.609525 7.3:+60085384 MS.gene97459:CDS
ATGTGACAAAGAGGTTAACC+TGG 0.611702 7.3:+60085369 MS.gene97459:CDS
AACAACCTCGACGAATCCGA+TGG 0.614235 7.3:+60084036 MS.gene97459:CDS
TTGGTTTGATGAGGAAAGCG+GGG 0.615065 7.3:+60084811 MS.gene97459:CDS
TCGACGACTCCATTGAAGGA+TGG 0.615561 7.3:-60085157 None:intergenic
GTCACATGCCTTTGATCCTG+CGG 0.618552 7.3:+60085292 MS.gene97459:CDS
AAGAGGTGCGGAATTCTCCA+TGG 0.621328 7.3:+60085334 MS.gene97459:CDS
TTCTATAAAAGGGACGTGTG+CGG 0.622155 7.3:-60084406 None:intergenic
AGTTGGATGAGGTTCAAAAG+GGG 0.625113 7.3:+60084658 MS.gene97459:CDS
ACCTTCCCAATTCTAAAACC+AGG 0.627242 7.3:-60085431 None:intergenic
AGCTTCGAAAGCCGAAACGG+CGG 0.637708 7.3:-60084364 None:intergenic
AACCTCGAAAACTCACAACC+CGG 0.647260 7.3:-60085107 None:intergenic
ATTTCAAGTGGAAAGAGGTG+CGG 0.648317 7.3:+60085322 MS.gene97459:CDS
CAATTGCAATCGATTCGACA+CGG 0.651781 7.3:-60084592 None:intergenic
ACATGGATGATGTGACAAAG+AGG 0.653060 7.3:+60085360 MS.gene97459:CDS
GCTTGAAAAGAAGCATGATG+AGG 0.654587 7.3:+60084617 MS.gene97459:CDS
TGAATACTAAGCAATTCCAT+CGG 0.661643 7.3:-60085083 None:intergenic
ACATGCCTTTGATCCTGCGG+TGG 0.670442 7.3:+60085295 MS.gene97459:CDS
AACCTGGCCGAATAAGGGAA+GGG 0.673729 7.3:+60085385 MS.gene97459:CDS
AATTGGTTTGAGGTAAACGA+CGG 0.689992 7.3:-60084216 None:intergenic
AGAGTAAGTTGAGAACACTA+GGG 0.701061 7.3:+60084568 MS.gene97459:CDS
AAGCAGTGTTGAATTCGTGG+AGG 0.727950 7.3:+60085204 MS.gene97459:CDS
GATTGCGTTTGTGTAAACGA+CGG 0.786042 7.3:-60084294 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGATTTAGATTTGAAA+GGG + chr7.3:60085015-60085034 MS.gene97459:CDS 15.0%
!!! TTTTTTGATTTAGATTTGAA+AGG + chr7.3:60085014-60085033 MS.gene97459:CDS 15.0%
! GAAAAGTTGTGTACAAATTA+GGG - chr7.3:60084509-60084528 None:intergenic 25.0%
! TTATGTAAGTAGTTTCTGTT+TGG + chr7.3:60085472-60085491 MS.gene97459:CDS 25.0%
!! TCACGTTTTCTTCTATAAAA+GGG - chr7.3:60084419-60084438 None:intergenic 25.0%
!! TTCACGTTTTCTTCTATAAA+AGG - chr7.3:60084420-60084439 None:intergenic 25.0%
!! TTTTGTCGTATGTTTGTTTA+GGG + chr7.3:60084910-60084929 MS.gene97459:CDS 25.0%
!!! AAGTTTACGAAGATTTTGAT+TGG + chr7.3:60084792-60084811 MS.gene97459:CDS 25.0%
!!! GTGTTGTTTATTCGAAAAAA+GGG + chr7.3:60084871-60084890 MS.gene97459:CDS 25.0%
!!! TTTTTCCTGGTTTTAGAATT+GGG + chr7.3:60085426-60085445 MS.gene97459:CDS 25.0%
GGAAAAGTTGTGTACAAATT+AGG - chr7.3:60084510-60084529 None:intergenic 30.0%
TGAAATAAGCACTTTATCAG+TGG - chr7.3:60084445-60084464 None:intergenic 30.0%
TGAATACTAAGCAATTCCAT+CGG - chr7.3:60085086-60085105 None:intergenic 30.0%
! CTTTTGTCGTATGTTTGTTT+AGG + chr7.3:60084909-60084928 MS.gene97459:CDS 30.0%
! GAGTGTTAAGGTTTTTGAAT+CGG + chr7.3:60084740-60084759 MS.gene97459:CDS 30.0%
! TAGTTGTTTGAAGCAATTGT+TGG + chr7.3:60085043-60085062 MS.gene97459:CDS 30.0%
! TGTACACAACTTTTCCATTT+GGG + chr7.3:60084514-60084533 MS.gene97459:CDS 30.0%
! TGTCTAAGAAGCTTTGTAAT+GGG + chr7.3:60084691-60084710 MS.gene97459:CDS 30.0%
! TTGTACACAACTTTTCCATT+TGG + chr7.3:60084513-60084532 MS.gene97459:CDS 30.0%
! TTGTCTAAGAAGCTTTGTAA+TGG + chr7.3:60084690-60084709 MS.gene97459:CDS 30.0%
!! GGTGTTGTTTATTCGAAAAA+AGG + chr7.3:60084870-60084889 MS.gene97459:CDS 30.0%
!! TGAGGTTGTTTGTTATTGTT+GGG - chr7.3:60083943-60083962 None:intergenic 30.0%
!! TGATGTTTTGTTGAGTGTTA+AGG + chr7.3:60084728-60084747 MS.gene97459:CDS 30.0%
!! TTGAGGTTGTTTGTTATTGT+TGG - chr7.3:60083944-60083963 None:intergenic 30.0%
!! TTTTTCGAATAAACAACACC+CGG - chr7.3:60084870-60084889 None:intergenic 30.0%
!!! AGATTTTGATTGGTTTGATG+AGG + chr7.3:60084802-60084821 MS.gene97459:CDS 30.0%
!!! GGTTTTAGTTTTGAAAGCTA+AGG - chr7.3:60083992-60084011 None:intergenic 30.0%
!!! GGTTTTGATTTGGTTAGTTT+TGG + chr7.3:60084942-60084961 MS.gene97459:CDS 30.0%
!!! GTTTGATGATGATGACTTTT+TGG - chr7.3:60084101-60084120 None:intergenic 30.0%
!!! GTTTTTCCTGGTTTTAGAAT+TGG + chr7.3:60085425-60085444 MS.gene97459:CDS 30.0%
AAGTTGGATGAGGTTCAAAA+GGG + chr7.3:60084657-60084676 MS.gene97459:CDS 35.0%
GAATTGCTTAGTATTCATCC+GGG + chr7.3:60085089-60085108 MS.gene97459:CDS 35.0%
GGAATTGCTTAGTATTCATC+CGG + chr7.3:60085088-60085107 MS.gene97459:CDS 35.0%
GTTTGTTTAGGGATGTTTCA+GGG + chr7.3:60084921-60084940 MS.gene97459:CDS 35.0%
TGAAACATTTCGGAGATTTG+AGG - chr7.3:60083961-60083980 None:intergenic 35.0%
TGTTTGTTTAGGGATGTTTC+AGG + chr7.3:60084920-60084939 MS.gene97459:CDS 35.0%
! AGAGTAAGTTGAGAACACTA+GGG + chr7.3:60084568-60084587 MS.gene97459:CDS 35.0%
! GAGATATTTCAAGTGGAAAG+AGG + chr7.3:60085317-60085336 MS.gene97459:CDS 35.0%
! TGTTCTATGAGGCATTTGTT+GGG + chr7.3:60085237-60085256 MS.gene97459:CDS 35.0%
! TTGTTCTATGAGGCATTTGT+TGG + chr7.3:60085236-60085255 MS.gene97459:CDS 35.0%
! TTTTCAGATGAGGAAGAAGT+TGG + chr7.3:60084641-60084660 MS.gene97459:CDS 35.0%
! TTTTCCATTTGGGTCTTCAT+TGG + chr7.3:60084524-60084543 MS.gene97459:CDS 35.0%
!! AATTGGTTTGAGGTAAACGA+CGG - chr7.3:60084219-60084238 None:intergenic 35.0%
!! ATGATGAGGTTTTTCAGATG+AGG + chr7.3:60084631-60084650 MS.gene97459:CDS 35.0%
!! GATGATGATGACTTTTTGGT+CGG - chr7.3:60084097-60084116 None:intergenic 35.0%
!! GGCGAATTTCTGAAACATTT+CGG - chr7.3:60083971-60083990 None:intergenic 35.0%
!! TTGAATCGGTTTTGCATGAT+GGG + chr7.3:60084754-60084773 MS.gene97459:CDS 35.0%
!! TTTGAATCGGTTTTGCATGA+TGG + chr7.3:60084753-60084772 MS.gene97459:CDS 35.0%
!! TTTGCATGATGGGTTTAAAG+CGG + chr7.3:60084764-60084783 MS.gene97459:CDS 35.0%
!!! GATGTTTCAGGGTTTTGATT+TGG + chr7.3:60084932-60084951 MS.gene97459:CDS 35.0%
!!! GGTTAGTTTTGGATTGAGTT+CGG + chr7.3:60084953-60084972 MS.gene97459:CDS 35.0%
!!! GTCGTCGATTTTCATTGATT+TGG + chr7.3:60085172-60085191 MS.gene97459:CDS 35.0%
AAAATCGACGACTCCATTGA+AGG - chr7.3:60085164-60085183 None:intergenic 40.0%
ACATGGATGATGTGACAAAG+AGG + chr7.3:60085360-60085379 MS.gene97459:CDS 40.0%
AGTTGGATGAGGTTCAAAAG+GGG + chr7.3:60084658-60084677 MS.gene97459:CDS 40.0%
ATGTGACAAAGAGGTTAACC+TGG + chr7.3:60085369-60085388 MS.gene97459:CDS 40.0%
CACATCATCCATGTATACCA+TGG - chr7.3:60085354-60085373 None:intergenic 40.0%
GAAGAAGAATTGACGTCGAA+TGG + chr7.3:60084987-60085006 MS.gene97459:CDS 40.0%
GAAGGTAGTTATTCAATCGC+AGG + chr7.3:60085448-60085467 MS.gene97459:CDS 40.0%
GAAGTTGGATGAGGTTCAAA+AGG + chr7.3:60084656-60084675 MS.gene97459:CDS 40.0%
GAGACTAATCCATCCTTCAA+TGG + chr7.3:60085148-60085167 MS.gene97459:CDS 40.0%
GATTGCGTTTGTGTAAACGA+CGG - chr7.3:60084297-60084316 None:intergenic 40.0%
GGAATTCTCCATGGTATACA+TGG + chr7.3:60085343-60085362 MS.gene97459:CDS 40.0%
TTCGTCGTTGAAGAATTCGA+AGG - chr7.3:60084013-60084032 None:intergenic 40.0%
TTCTATAAAAGGGACGTGTG+CGG - chr7.3:60084409-60084428 None:intergenic 40.0%
TTGGTCGGTGATGATTTCTT+CGG - chr7.3:60084082-60084101 None:intergenic 40.0%
! ATTTCAAGTGGAAAGAGGTG+CGG + chr7.3:60085322-60085341 MS.gene97459:CDS 40.0%
! CAGAGTAAGTTGAGAACACT+AGG + chr7.3:60084567-60084586 MS.gene97459:CDS 40.0%
! GCTTGAAAAGAAGCATGATG+AGG + chr7.3:60084617-60084636 MS.gene97459:CDS 40.0%
! GTCGTTGAGTTTGTTCTATG+AGG + chr7.3:60085226-60085245 MS.gene97459:CDS 40.0%
!! ACCTTCCCAATTCTAAAACC+AGG - chr7.3:60085434-60085453 None:intergenic 40.0%
!! ATTGGTTTGATGAGGAAAGC+GGG + chr7.3:60084810-60084829 MS.gene97459:CDS 40.0%
!! CAATTGCAATCGATTCGACA+CGG - chr7.3:60084595-60084614 None:intergenic 40.0%
!! GATTGGTTTGATGAGGAAAG+CGG + chr7.3:60084809-60084828 MS.gene97459:CDS 40.0%
!!! TCCTGGTTTTAGAATTGGGA+AGG + chr7.3:60085430-60085449 MS.gene97459:CDS 40.0%
AAAAACCATCGGATTCGTCG+AGG - chr7.3:60084044-60084063 None:intergenic 45.0%
AACCTCGAAAACTCACAACC+CGG - chr7.3:60085110-60085129 None:intergenic 45.0%
AATAAGGGAAGGGCAAAGGT+CGG + chr7.3:60085395-60085414 MS.gene97459:CDS 45.0%
ACCTTTGCCCTTCCCTTATT+CGG - chr7.3:60085395-60085414 None:intergenic 45.0%
ACTTGAAATATCTCCACCGC+AGG - chr7.3:60085311-60085330 None:intergenic 45.0%
AGGTTAACCTGGCCGAATAA+GGG + chr7.3:60085380-60085399 MS.gene97459:CDS 45.0%
CGTGTCGAATCGATTGCAAT+TGG + chr7.3:60084593-60084612 MS.gene97459:CDS 45.0%
GATGAGGAAGAAGTTGGATG+AGG + chr7.3:60084647-60084666 MS.gene97459:CDS 45.0%
GCATGTGTCTAGTAATCCGA+TGG + chr7.3:60085067-60085086 MS.gene97459:CDS 45.0%
GCTTCCAATGAAGACCCAAA+TGG - chr7.3:60084531-60084550 None:intergenic 45.0%
GTCGAGGAGAGAAAAACCAT+CGG - chr7.3:60084055-60084074 None:intergenic 45.0%
GTCTTCATTGGAAGCTGAAG+TGG + chr7.3:60084536-60084555 MS.gene97459:CDS 45.0%
TGCGGTGGAGATATTTCAAG+TGG + chr7.3:60085310-60085329 MS.gene97459:CDS 45.0%
! AAGCAGTGTTGAATTCGTGG+AGG + chr7.3:60085204-60085223 MS.gene97459:CDS 45.0%
! ACGAAGCAGTGTTGAATTCG+TGG + chr7.3:60085201-60085220 MS.gene97459:CDS 45.0%
! CTATGAGGCATTTGTTGGGA+TGG + chr7.3:60085241-60085260 MS.gene97459:CDS 45.0%
! TCGTTTCGGGTAGTGCTAAT+TGG - chr7.3:60084236-60084255 None:intergenic 45.0%
! TTGGTTTGATGAGGAAAGCG+GGG + chr7.3:60084811-60084830 MS.gene97459:CDS 45.0%
!! GGGTAGTGCTAATTGGTTTG+AGG - chr7.3:60084229-60084248 None:intergenic 45.0%
!! GTTTTGGATGGGGAAGAAGA+CGG - chr7.3:60084144-60084163 None:intergenic 45.0%
!!! AAGAGGGTGTCGTTTTGGAT+GGG - chr7.3:60084155-60084174 None:intergenic 45.0%
!!! GAAGAAGACGGTGTCGTTTT+GGG - chr7.3:60084132-60084151 None:intergenic 45.0%
!!! TGTAAACGACGGTGTCGTTT+TGG - chr7.3:60084286-60084305 None:intergenic 45.0%
AACAACCTCGACGAATCCGA+TGG + chr7.3:60084036-60084055 MS.gene97459:CDS 50.0%
AACCTGGCCGAATAAGGGAA+GGG + chr7.3:60085385-60085404 MS.gene97459:CDS 50.0%
AGATCGAACGACGTCGTTTC+GGG - chr7.3:60084249-60084268 None:intergenic 50.0%
ATAAGGGAAGGGCAAAGGTC+GGG + chr7.3:60085396-60085415 MS.gene97459:CDS 50.0%
CGAAGCTTCGAAAGCCGAAA+CGG - chr7.3:60084370-60084389 None:intergenic 50.0%
GAGATCGAACGACGTCGTTT+CGG - chr7.3:60084250-60084269 None:intergenic 50.0%
GAGGTTAACCTGGCCGAATA+AGG + chr7.3:60085379-60085398 MS.gene97459:CDS 50.0%
GGACGTGTGCGGTTTGTAAT+TGG - chr7.3:60084398-60084417 None:intergenic 50.0%
GTCACATGCCTTTGATCCTG+CGG + chr7.3:60085292-60085311 MS.gene97459:CDS 50.0%
GTCGGTGATGATTTCTTCGG+TGG - chr7.3:60084079-60084098 None:intergenic 50.0%
TAACCTGGCCGAATAAGGGA+AGG + chr7.3:60085384-60085403 MS.gene97459:CDS 50.0%
TAGATCGTGCGACGTCGTTT+CGG - chr7.3:60084328-60084347 None:intergenic 50.0%
TATCTCCACCGCAGGATCAA+AGG - chr7.3:60085303-60085322 None:intergenic 50.0%
TCGACGACTCCATTGAAGGA+TGG - chr7.3:60085160-60085179 None:intergenic 50.0%
TGATTTCTTCGGTGGAGTCG+AGG - chr7.3:60084071-60084090 None:intergenic 50.0%
TTTGATGAGGAAAGCGGGGT+GGG + chr7.3:60084815-60084834 MS.gene97459:CDS 50.0%
! AAGAGGTGCGGAATTCTCCA+TGG + chr7.3:60085334-60085353 MS.gene97459:CDS 50.0%
! ATCCGGGTTGTGAGTTTTCG+AGG + chr7.3:60085105-60085124 MS.gene97459:CDS 50.0%
! TTGGGATGGCTAGCTCGATA+TGG + chr7.3:60085255-60085274 MS.gene97459:CDS 50.0%
!! GTCGGGTTCACTGTTTTTCC+TGG + chr7.3:60085413-60085432 MS.gene97459:CDS 50.0%
!!! AACGACGGTGTCGTTTTGGT+TGG - chr7.3:60084204-60084223 None:intergenic 50.0%
!!! ACGACGGTGTCGTTTTGGTT+GGG - chr7.3:60084203-60084222 None:intergenic 50.0%
!!! AGAGGGTGTCGTTTTGGATG+GGG - chr7.3:60084154-60084173 None:intergenic 50.0%
!!! GAAGAGGAGGGTGTCGTTTT+GGG - chr7.3:60084180-60084199 None:intergenic 50.0%
!!! GAAGAGGGTGTCGTTTTGGA+TGG - chr7.3:60084156-60084175 None:intergenic 50.0%
!!! GGAAGAAGACGGTGTCGTTT+TGG - chr7.3:60084133-60084152 None:intergenic 50.0%
!!! GGTAAACGACGGTGTCGTTT+TGG - chr7.3:60084208-60084227 None:intergenic 50.0%
!!! GGTGTCGTTTTGGGTGAAGA+GGG - chr7.3:60084171-60084190 None:intergenic 50.0%
!!! GTTTTGGTTGGGGAAGAGGA+GGG - chr7.3:60084192-60084211 None:intergenic 50.0%
!!! TGTCGTTTTGGTTGGCGTGT+CGG - chr7.3:60084274-60084293 None:intergenic 50.0%
!!! TGTCGTTTTGGTTGGGGAAG+AGG - chr7.3:60084196-60084215 None:intergenic 50.0%
ACATGCCTTTGATCCTGCGG+TGG + chr7.3:60085295-60085314 MS.gene97459:CDS 55.0%
AGATCGTGCGACGTCGTTTC+GGG - chr7.3:60084327-60084346 None:intergenic 55.0%
AGCTTCGAAAGCCGAAACGG+CGG - chr7.3:60084367-60084386 None:intergenic 55.0%
AGGAAAGCGGGGTGGGATTT+AGG + chr7.3:60084822-60084841 MS.gene97459:CDS 55.0%
ATCGATCTTCGCCGCCGTTT+CGG + chr7.3:60084353-60084372 MS.gene97459:CDS 55.0%
GCCGAATAAGGGAAGGGCAA+AGG + chr7.3:60085391-60085410 MS.gene97459:CDS 55.0%
GCTGCGAATGCTGTTCATCC+GGG + chr7.3:60084849-60084868 MS.gene97459:CDS 55.0%
GGCTGCGAATGCTGTTCATC+CGG + chr7.3:60084848-60084867 MS.gene97459:CDS 55.0%
GTTTGATGAGGAAAGCGGGG+TGG + chr7.3:60084814-60084833 MS.gene97459:CDS 55.0%
! AGCGGGGTGGGATTTAGGTT+TGG + chr7.3:60084827-60084846 MS.gene97459:CDS 55.0%
!!! CGACGGTGTCGTTTTGGTTG+GGG - chr7.3:60084202-60084221 None:intergenic 55.0%
!!! CGGTGTCGTTTTGGGTGGAT+CGG - chr7.3:60084124-60084143 None:intergenic 55.0%
!!! CGTTTTGGTTGGGGAAGAGG+AGG - chr7.3:60084193-60084212 None:intergenic 55.0%
!!! GAAGACGGTGTCGTTTTGGG+TGG - chr7.3:60084129-60084148 None:intergenic 55.0%
!!! GGAAGAGGAGGGTGTCGTTT+TGG - chr7.3:60084181-60084200 None:intergenic 55.0%
!!! GGGTGAAGAGGGTGTCGTTT+TGG - chr7.3:60084160-60084179 None:intergenic 55.0%
!!! GGGTGTCGTTTTGGGTGAAG+AGG - chr7.3:60084172-60084191 None:intergenic 55.0%
!!! GGTGTCGTTTTGGGTGGATC+GGG - chr7.3:60084123-60084142 None:intergenic 55.0%
TGCCCTTCCCTTATTCGGCC+AGG - chr7.3:60085390-60085409 None:intergenic 60.0%
! TGCGACGTCGTTTCGGGTAG+TGG - chr7.3:60084321-60084340 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 60083925 60085502 60083925 ID=MS.gene97459
chr7.3 mRNA 60083925 60085502 60083925 ID=MS.gene97459.t1;Parent=MS.gene97459
chr7.3 exon 60083925 60085502 60083925 ID=MS.gene97459.t1.exon1;Parent=MS.gene97459.t1
chr7.3 CDS 60083925 60085502 60083925 ID=cds.MS.gene97459.t1;Parent=MS.gene97459.t1
Gene Sequence

>MS.gene97459

ATGCAAGAAATCTATCCCAACAATAACAAACAACCTCAAATCTCCGAAATGTTTCAGAAATTCGCCTTAGCTTTCAAAACTAAAACCTTCGAATTCTTCAACGACGAAGAAAACAACCTCGACGAATCCGATGGTTTTTCTCTCCTCGACTCCACCGAAGAAATCATCACCGACCAAAAAGTCATCATCATCAAACCCGATCCACCCAAAACGACACCGTCTTCTTCCCCATCCAAAACGACACCCTCTTCACCCAAAACGACACCCTCCTCTTCCCCAACCAAAACGACACCGTCGTTTACCTCAAACCAATTAGCACTACCCGAAACGACGTCGTTCGATCTCACCGACACGCCAACCAAAACGACACCGTCGTTTACACAAACGCAATCACCACTACCCGAAACGACGTCGCACGATCTAATCTCATCGATCTTCGCCGCCGTTTCGGCTTTCGAAGCTTCGTATTTCCAATTACAAACCGCACACGTCCCTTTTATAGAAGAAAACGTGAAAACCACTGATAAAGTGCTTATTTCACATCTTCAGAGATTATCTGAATTCAAGAAATTTTACTGTAACCCTAATTTGTACACAACTTTTCCATTTGGGTCTTCATTGGAAGCTGAAGTGGAAGAGAATCAGAGTAAGTTGAGAACACTAGGGACCGTGTCGAATCGATTGCAATTGGAGCTTGAAAAGAAGCATGATGAGGTTTTTCAGATGAGGAAGAAGTTGGATGAGGTTCAAAAGGGGAATGTGAATTTGTCTAAGAAGCTTTGTAATGGGAATGTTAATAGTTGTGATGTTTTGTTGAGTGTTAAGGTTTTTGAATCGGTTTTGCATGATGGGTTTAAAGCGGCGCATAAGTTTACGAAGATTTTGATTGGTTTGATGAGGAAAGCGGGGTGGGATTTAGGTTTGGCTGCGAATGCTGTTCATCCGGGTGTTGTTTATTCGAAAAAAGGGCATAATCAGTATGCGCTTTTGTCGTATGTTTGTTTAGGGATGTTTCAGGGTTTTGATTTGGTTAGTTTTGGATTGAGTTCGGAGAGAAGAGACGAAGAAGAATTGACGTCGAATGGTGAGTTTTTTGATTTAGATTTGAAAGGGAGAGATAGTTGTTTGAAGCAATTGTTGGAGCATGTGTCTAGTAATCCGATGGAATTGCTTAGTATTCATCCGGGTTGTGAGTTTTCGAGGTTTTGTGAGATGAAGTATGAGAGACTAATCCATCCTTCAATGGAGTCGTCGATTTTCATTGATTTGGATCAGAACGAAGCAGTGTTGAATTCGTGGAGGTCGTTGAGTTTGTTCTATGAGGCATTTGTTGGGATGGCTAGCTCGATATGGACACTGCATAAGTTGTCACATGCCTTTGATCCTGCGGTGGAGATATTTCAAGTGGAAAGAGGTGCGGAATTCTCCATGGTATACATGGATGATGTGACAAAGAGGTTAACCTGGCCGAATAAGGGAAGGGCAAAGGTCGGGTTCACTGTTTTTCCTGGTTTTAGAATTGGGAAGGTAGTTATTCAATCGCAGGTTTATGTAAGTAGTTTCTGTTTGGAAGAGTAG

Protein sequence

>MS.gene97459.t1

MQEIYPNNNKQPQISEMFQKFALAFKTKTFEFFNDEENNLDESDGFSLLDSTEEIITDQKVIIIKPDPPKTTPSSSPSKTTPSSPKTTPSSSPTKTTPSFTSNQLALPETTSFDLTDTPTKTTPSFTQTQSPLPETTSHDLISSIFAAVSAFEASYFQLQTAHVPFIEENVKTTDKVLISHLQRLSEFKKFYCNPNLYTTFPFGSSLEAEVEENQSKLRTLGTVSNRLQLELEKKHDEVFQMRKKLDEVQKGNVNLSKKLCNGNVNSCDVLLSVKVFESVLHDGFKAAHKFTKILIGLMRKAGWDLGLAANAVHPGVVYSKKGHNQYALLSYVCLGMFQGFDLVSFGLSSERRDEEELTSNGEFFDLDLKGRDSCLKQLLEHVSSNPMELLSIHPGCEFSRFCEMKYERLIHPSMESSIFIDLDQNEAVLNSWRSLSLFYEAFVGMASSIWTLHKLSHAFDPAVEIFQVERGAEFSMVYMDDVTKRLTWPNKGRAKVGFTVFPGFRIGKVVIQSQVYVSSFCLEE