Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97459.t1 | XP_013442430.1 | 93.8 | 529 | 29 | 1 | 1 | 525 | 1 | 529 | 6.10E-247 | 863.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97459.t1 | F4KGE8 | 29.2 | 401 | 239 | 9 | 148 | 518 | 170 | 555 | 5.2e-37 | 157.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97459.t1 | A0A072TSD7 | 93.8 | 529 | 29 | 1 | 1 | 525 | 1 | 529 | 4.4e-247 | 863.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene97459 | 0.846425 | 2.19E-59 | -1.69E-46 |
MS.gene049283 | MS.gene97459 | 0.816778 | 4.64E-52 | -1.69E-46 |
MS.gene049350 | MS.gene97459 | 0.807457 | 5.01E-50 | -1.69E-46 |
MS.gene049368 | MS.gene97459 | 0.839195 | 1.83E-57 | -1.69E-46 |
MS.gene049499 | MS.gene97459 | 0.800749 | 1.25E-48 | -1.69E-46 |
MS.gene049711 | MS.gene97459 | 0.812599 | 3.91E-51 | -1.69E-46 |
MS.gene049983 | MS.gene97459 | 0.827126 | 1.86E-54 | -1.69E-46 |
MS.gene050414 | MS.gene97459 | 0.828345 | 9.47E-55 | -1.69E-46 |
MS.gene050551 | MS.gene97459 | 0.825986 | 3.48E-54 | -1.69E-46 |
MS.gene050646 | MS.gene97459 | 0.831927 | 1.26E-55 | -1.69E-46 |
MS.gene050654 | MS.gene97459 | 0.840097 | 1.07E-57 | -1.69E-46 |
MS.gene051279 | MS.gene97459 | 0.805983 | 1.03E-49 | -1.69E-46 |
MS.gene051332 | MS.gene97459 | 0.80328 | 3.76E-49 | -1.69E-46 |
MS.gene051800 | MS.gene97459 | 0.820188 | 7.83E-53 | -1.69E-46 |
MS.gene051852 | MS.gene97459 | 0.850308 | 1.85E-60 | -1.69E-46 |
MS.gene052016 | MS.gene97459 | 0.827531 | 1.49E-54 | -1.69E-46 |
MS.gene052307 | MS.gene97459 | 0.845958 | 2.93E-59 | -1.69E-46 |
MS.gene052463 | MS.gene97459 | 0.860407 | 2.11E-63 | -1.69E-46 |
MS.gene052493 | MS.gene97459 | 0.811153 | 8.07E-51 | -1.69E-46 |
MS.gene052516 | MS.gene97459 | 0.824761 | 6.77E-54 | -1.69E-46 |
MS.gene052609 | MS.gene97459 | 0.850138 | 2.06E-60 | -1.69E-46 |
MS.gene053079 | MS.gene97459 | 0.813474 | 2.51E-51 | -1.69E-46 |
MS.gene053456 | MS.gene97459 | 0.812287 | 4.58E-51 | -1.69E-46 |
MS.gene05350 | MS.gene97459 | 0.812202 | 4.77E-51 | -1.69E-46 |
MS.gene054178 | MS.gene97459 | 0.811411 | 7.10E-51 | -1.69E-46 |
MS.gene054479 | MS.gene97459 | 0.820477 | 6.72E-53 | -1.69E-46 |
MS.gene054576 | MS.gene97459 | 0.808726 | 2.69E-50 | -1.69E-46 |
MS.gene05458 | MS.gene97459 | 0.817283 | 3.57E-52 | -1.69E-46 |
MS.gene054641 | MS.gene97459 | 0.809012 | 2.34E-50 | -1.69E-46 |
MS.gene054892 | MS.gene97459 | 0.8223 | 2.55E-53 | -1.69E-46 |
MS.gene054893 | MS.gene97459 | 0.823032 | 1.72E-53 | -1.69E-46 |
MS.gene055311 | MS.gene97459 | 0.800004 | 1.77E-48 | -1.69E-46 |
MS.gene055313 | MS.gene97459 | 0.817808 | 2.72E-52 | -1.69E-46 |
MS.gene055327 | MS.gene97459 | 0.804225 | 2.39E-49 | -1.69E-46 |
MS.gene055465 | MS.gene97459 | 0.81127 | 7.61E-51 | -1.69E-46 |
MS.gene055469 | MS.gene97459 | 0.822582 | 2.19E-53 | -1.69E-46 |
MS.gene055513 | MS.gene97459 | 0.853298 | 2.62E-61 | -1.69E-46 |
MS.gene05552 | MS.gene97459 | 0.821756 | 3.41E-53 | -1.69E-46 |
MS.gene055864 | MS.gene97459 | 0.87452 | 6.33E-68 | -1.69E-46 |
MS.gene056045 | MS.gene97459 | 0.823724 | 1.19E-53 | -1.69E-46 |
MS.gene056308 | MS.gene97459 | 0.808892 | 2.48E-50 | -1.69E-46 |
MS.gene056390 | MS.gene97459 | 0.810088 | 1.37E-50 | -1.69E-46 |
MS.gene056507 | MS.gene97459 | 0.809915 | 1.49E-50 | -1.69E-46 |
MS.gene056699 | MS.gene97459 | 0.816686 | 4.87E-52 | -1.69E-46 |
MS.gene05686 | MS.gene97459 | 0.824972 | 6.04E-54 | -1.69E-46 |
MS.gene057034 | MS.gene97459 | 0.821484 | 3.94E-53 | -1.69E-46 |
MS.gene057102 | MS.gene97459 | 0.81914 | 1.36E-52 | -1.69E-46 |
MS.gene057915 | MS.gene97459 | 0.823113 | 1.65E-53 | -1.69E-46 |
MS.gene057919 | MS.gene97459 | 0.804404 | 2.20E-49 | -1.69E-46 |
MS.gene058010 | MS.gene97459 | 0.808765 | 2.64E-50 | -1.69E-46 |
MS.gene058081 | MS.gene97459 | 0.819285 | 1.26E-52 | -1.69E-46 |
MS.gene058159 | MS.gene97459 | 0.823812 | 1.13E-53 | -1.69E-46 |
MS.gene058289 | MS.gene97459 | 0.839274 | 1.75E-57 | -1.69E-46 |
MS.gene058429 | MS.gene97459 | 0.826485 | 2.64E-54 | -1.69E-46 |
MS.gene058647 | MS.gene97459 | 0.804103 | 2.54E-49 | -1.69E-46 |
MS.gene058758 | MS.gene97459 | 0.810731 | 9.96E-51 | -1.69E-46 |
MS.gene059170 | MS.gene97459 | 0.820866 | 5.47E-53 | -1.69E-46 |
MS.gene059439 | MS.gene97459 | 0.813792 | 2.14E-51 | -1.69E-46 |
MS.gene059965 | MS.gene97459 | 0.836176 | 1.09E-56 | -1.69E-46 |
MS.gene060259 | MS.gene97459 | 0.802504 | 5.44E-49 | -1.69E-46 |
MS.gene060380 | MS.gene97459 | 0.810021 | 1.42E-50 | -1.69E-46 |
MS.gene060435 | MS.gene97459 | 0.823501 | 1.34E-53 | -1.69E-46 |
MS.gene06052 | MS.gene97459 | 0.844287 | 8.30E-59 | -1.69E-46 |
MS.gene060777 | MS.gene97459 | 0.823204 | 1.57E-53 | -1.69E-46 |
MS.gene060785 | MS.gene97459 | 0.80339 | 3.57E-49 | -1.69E-46 |
MS.gene060932 | MS.gene97459 | 0.849605 | 2.90E-60 | -1.69E-46 |
MS.gene060933 | MS.gene97459 | 0.826119 | 3.23E-54 | -1.69E-46 |
MS.gene060935 | MS.gene97459 | 0.808275 | 3.35E-50 | -1.69E-46 |
MS.gene060937 | MS.gene97459 | 0.827738 | 1.33E-54 | -1.69E-46 |
MS.gene061100 | MS.gene97459 | 0.826476 | 2.66E-54 | -1.69E-46 |
MS.gene061188 | MS.gene97459 | 0.828796 | 7.37E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97459.t1 | MTR_0178s0030 | 94.518 | 529 | 25 | 1 | 1 | 525 | 1 | 529 | 0.0 | 954 |
MS.gene97459.t1 | MTR_4g025420 | 37.621 | 412 | 224 | 6 | 132 | 525 | 23 | 419 | 1.07e-87 | 276 |
MS.gene97459.t1 | MTR_8g087400 | 34.772 | 394 | 226 | 7 | 141 | 519 | 82 | 459 | 3.81e-64 | 216 |
MS.gene97459.t1 | MTR_8g059485 | 35.052 | 388 | 228 | 9 | 141 | 519 | 65 | 437 | 1.37e-60 | 206 |
MS.gene97459.t1 | MTR_8g059485 | 35.052 | 388 | 228 | 9 | 141 | 519 | 74 | 446 | 1.71e-60 | 206 |
MS.gene97459.t1 | MTR_2g075910 | 29.828 | 466 | 291 | 10 | 74 | 518 | 3 | 453 | 9.43e-56 | 194 |
MS.gene97459.t1 | MTR_3g462150 | 29.323 | 399 | 246 | 7 | 141 | 518 | 94 | 477 | 2.49e-44 | 163 |
MS.gene97459.t1 | MTR_5g075180 | 28.392 | 398 | 242 | 7 | 133 | 521 | 79 | 442 | 2.77e-44 | 162 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97459.t1 | AT3G60680 | 53.077 | 520 | 193 | 8 | 12 | 519 | 14 | 494 | 1.52e-179 | 514 |
MS.gene97459.t1 | AT2G45260 | 39.031 | 392 | 215 | 5 | 141 | 519 | 39 | 419 | 2.34e-89 | 281 |
MS.gene97459.t1 | AT1G53380 | 34.596 | 396 | 228 | 8 | 141 | 519 | 70 | 451 | 5.89e-63 | 213 |
MS.gene97459.t1 | AT1G53380 | 34.596 | 396 | 228 | 8 | 141 | 519 | 70 | 451 | 5.89e-63 | 213 |
MS.gene97459.t1 | AT1G53380 | 34.596 | 396 | 228 | 8 | 141 | 519 | 70 | 451 | 5.89e-63 | 213 |
MS.gene97459.t1 | AT1G53380 | 34.596 | 396 | 228 | 8 | 141 | 519 | 70 | 451 | 5.89e-63 | 213 |
MS.gene97459.t1 | AT1G53380 | 34.596 | 396 | 228 | 8 | 141 | 519 | 70 | 451 | 5.89e-63 | 213 |
MS.gene97459.t1 | AT3G14870 | 31.221 | 426 | 260 | 8 | 114 | 522 | 56 | 465 | 3.10e-59 | 203 |
MS.gene97459.t1 | AT3G14870 | 31.221 | 426 | 260 | 8 | 114 | 522 | 56 | 465 | 3.10e-59 | 203 |
MS.gene97459.t1 | AT3G14870 | 31.221 | 426 | 260 | 8 | 114 | 522 | 56 | 465 | 3.10e-59 | 203 |
MS.gene97459.t1 | AT3G14870 | 31.221 | 426 | 260 | 8 | 114 | 522 | 60 | 469 | 3.50e-59 | 203 |
MS.gene97459.t1 | AT3G14870 | 31.221 | 426 | 260 | 8 | 114 | 522 | 57 | 466 | 3.59e-59 | 203 |
MS.gene97459.t1 | AT1G29300 | 30.789 | 393 | 230 | 7 | 141 | 519 | 88 | 452 | 2.47e-50 | 179 |
MS.gene97459.t1 | AT4G34080 | 35.357 | 280 | 154 | 5 | 141 | 406 | 15 | 281 | 1.57e-48 | 169 |
MS.gene97459.t1 | AT2G30380 | 30.529 | 416 | 229 | 10 | 115 | 519 | 45 | 411 | 7.11e-46 | 166 |
MS.gene97459.t1 | AT5G58960 | 28.537 | 410 | 244 | 9 | 141 | 518 | 88 | 480 | 9.87e-44 | 162 |
MS.gene97459.t1 | AT5G58960 | 28.537 | 410 | 244 | 9 | 141 | 518 | 88 | 480 | 9.87e-44 | 162 |
MS.gene97459.t1 | AT5G58960 | 28.537 | 410 | 244 | 9 | 141 | 518 | 163 | 555 | 1.42e-43 | 162 |
MS.gene97459.t1 | AT4G33320 | 35.556 | 270 | 146 | 6 | 141 | 395 | 15 | 271 | 9.03e-42 | 152 |
MS.gene97459.t1 | AT4G36100 | 40.860 | 93 | 53 | 1 | 141 | 231 | 15 | 107 | 2.99e-14 | 72.8 |
MS.gene97459.t1 | AT2G32130 | 30.000 | 120 | 83 | 1 | 141 | 260 | 36 | 154 | 1.88e-11 | 62.8 |
Find 97 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGAAAAGTTGTGTACAAATT+AGG | 0.125406 | 7.3:-60084507 | None:intergenic |
AGGAAAGCGGGGTGGGATTT+AGG | 0.182417 | 7.3:+60084822 | MS.gene97459:CDS |
AGATCGTGCGACGTCGTTTC+GGG | 0.231429 | 7.3:-60084324 | None:intergenic |
AGATCGAACGACGTCGTTTC+GGG | 0.242209 | 7.3:-60084246 | None:intergenic |
GGAAGAGGAGGGTGTCGTTT+TGG | 0.246195 | 7.3:-60084178 | None:intergenic |
TGTTTGTTTAGGGATGTTTC+AGG | 0.249312 | 7.3:+60084920 | MS.gene97459:CDS |
GGACGTGTGCGGTTTGTAAT+TGG | 0.271045 | 7.3:-60084395 | None:intergenic |
TCGTTTCGGGTAGTGCTAAT+TGG | 0.273993 | 7.3:-60084233 | None:intergenic |
ACCTTTGCCCTTCCCTTATT+CGG | 0.290519 | 7.3:-60085392 | None:intergenic |
GAAAAGTTGTGTACAAATTA+GGG | 0.293873 | 7.3:-60084506 | None:intergenic |
GGTAAACGACGGTGTCGTTT+TGG | 0.315847 | 7.3:-60084205 | None:intergenic |
GGAAGAAGACGGTGTCGTTT+TGG | 0.316956 | 7.3:-60084130 | None:intergenic |
GGCGAATTTCTGAAACATTT+CGG | 0.321321 | 7.3:-60083968 | None:intergenic |
TAGATCGTGCGACGTCGTTT+CGG | 0.327779 | 7.3:-60084325 | None:intergenic |
TTGGGATGGCTAGCTCGATA+TGG | 0.335510 | 7.3:+60085255 | MS.gene97459:CDS |
GAGGTTAACCTGGCCGAATA+AGG | 0.343519 | 7.3:+60085379 | MS.gene97459:CDS |
TTGAGGTTGTTTGTTATTGT+TGG | 0.350674 | 7.3:-60083941 | None:intergenic |
TGTAAACGACGGTGTCGTTT+TGG | 0.359861 | 7.3:-60084283 | None:intergenic |
GAGATCGAACGACGTCGTTT+CGG | 0.366615 | 7.3:-60084247 | None:intergenic |
TGTCTAAGAAGCTTTGTAAT+GGG | 0.369481 | 7.3:+60084691 | MS.gene97459:CDS |
ATCGATCTTCGCCGCCGTTT+CGG | 0.375334 | 7.3:+60084353 | MS.gene97459:CDS |
AGCGGGGTGGGATTTAGGTT+TGG | 0.395552 | 7.3:+60084827 | MS.gene97459:CDS |
GGCTGCGAATGCTGTTCATC+CGG | 0.397718 | 7.3:+60084848 | MS.gene97459:CDS |
GGGTGAAGAGGGTGTCGTTT+TGG | 0.400345 | 7.3:-60084157 | None:intergenic |
TTGTTCTATGAGGCATTTGT+TGG | 0.411551 | 7.3:+60085236 | MS.gene97459:CDS |
TGCGACGTCGTTTCGGGTAG+TGG | 0.414451 | 7.3:-60084318 | None:intergenic |
GGAATTGCTTAGTATTCATC+CGG | 0.418751 | 7.3:+60085088 | MS.gene97459:CDS |
CGTGTCGAATCGATTGCAAT+TGG | 0.423270 | 7.3:+60084593 | MS.gene97459:CDS |
TAGTTGTTTGAAGCAATTGT+TGG | 0.431050 | 7.3:+60085043 | MS.gene97459:CDS |
TGAGGTTGTTTGTTATTGTT+GGG | 0.431892 | 7.3:-60083940 | None:intergenic |
TTGGTCGGTGATGATTTCTT+CGG | 0.436152 | 7.3:-60084079 | None:intergenic |
TGCCCTTCCCTTATTCGGCC+AGG | 0.437856 | 7.3:-60085387 | None:intergenic |
TTATGTAAGTAGTTTCTGTT+TGG | 0.438980 | 7.3:+60085472 | MS.gene97459:CDS |
GAAGTTGGATGAGGTTCAAA+AGG | 0.439815 | 7.3:+60084656 | MS.gene97459:CDS |
TTGTCTAAGAAGCTTTGTAA+TGG | 0.453436 | 7.3:+60084690 | MS.gene97459:CDS |
CAGAGTAAGTTGAGAACACT+AGG | 0.459927 | 7.3:+60084567 | MS.gene97459:CDS |
GTTTGTTTAGGGATGTTTCA+GGG | 0.464560 | 7.3:+60084921 | MS.gene97459:CDS |
AGGTTAACCTGGCCGAATAA+GGG | 0.474296 | 7.3:+60085380 | MS.gene97459:CDS |
GGGTAGTGCTAATTGGTTTG+AGG | 0.477165 | 7.3:-60084226 | None:intergenic |
TTTGATGAGGAAAGCGGGGT+GGG | 0.484462 | 7.3:+60084815 | MS.gene97459:CDS |
CTATGAGGCATTTGTTGGGA+TGG | 0.485726 | 7.3:+60085241 | MS.gene97459:CDS |
AAAATCGACGACTCCATTGA+AGG | 0.490608 | 7.3:-60085161 | None:intergenic |
ATAAGGGAAGGGCAAAGGTC+GGG | 0.494657 | 7.3:+60085396 | MS.gene97459:CDS |
GTCGTTGAGTTTGTTCTATG+AGG | 0.503096 | 7.3:+60085226 | MS.gene97459:CDS |
TGTTCTATGAGGCATTTGTT+GGG | 0.504434 | 7.3:+60085237 | MS.gene97459:CDS |
GTCGGTGATGATTTCTTCGG+TGG | 0.507256 | 7.3:-60084076 | None:intergenic |
ATTGGTTTGATGAGGAAAGC+GGG | 0.509874 | 7.3:+60084810 | MS.gene97459:CDS |
GTCTTCATTGGAAGCTGAAG+TGG | 0.511850 | 7.3:+60084536 | MS.gene97459:CDS |
ACGAAGCAGTGTTGAATTCG+TGG | 0.526031 | 7.3:+60085201 | MS.gene97459:CDS |
CGAAGCTTCGAAAGCCGAAA+CGG | 0.528599 | 7.3:-60084367 | None:intergenic |
TGAAACATTTCGGAGATTTG+AGG | 0.528680 | 7.3:-60083958 | None:intergenic |
GCTGCGAATGCTGTTCATCC+GGG | 0.530190 | 7.3:+60084849 | MS.gene97459:CDS |
AAGTTGGATGAGGTTCAAAA+GGG | 0.531326 | 7.3:+60084657 | MS.gene97459:CDS |
TATCTCCACCGCAGGATCAA+AGG | 0.540252 | 7.3:-60085300 | None:intergenic |
GAGACTAATCCATCCTTCAA+TGG | 0.540903 | 7.3:+60085148 | MS.gene97459:CDS |
GCTTCCAATGAAGACCCAAA+TGG | 0.542057 | 7.3:-60084528 | None:intergenic |
GATGAGGAAGAAGTTGGATG+AGG | 0.548856 | 7.3:+60084647 | MS.gene97459:CDS |
GAGATATTTCAAGTGGAAAG+AGG | 0.553599 | 7.3:+60085317 | MS.gene97459:CDS |
GTTTGATGAGGAAAGCGGGG+TGG | 0.554497 | 7.3:+60084814 | MS.gene97459:CDS |
GAAGGTAGTTATTCAATCGC+AGG | 0.557620 | 7.3:+60085448 | MS.gene97459:CDS |
TGAAATAAGCACTTTATCAG+TGG | 0.565385 | 7.3:-60084442 | None:intergenic |
GAAGAAGAATTGACGTCGAA+TGG | 0.568449 | 7.3:+60084987 | MS.gene97459:CDS |
GCCGAATAAGGGAAGGGCAA+AGG | 0.577715 | 7.3:+60085391 | MS.gene97459:CDS |
ACTTGAAATATCTCCACCGC+AGG | 0.580613 | 7.3:-60085308 | None:intergenic |
GATTGGTTTGATGAGGAAAG+CGG | 0.584028 | 7.3:+60084809 | MS.gene97459:CDS |
AATAAGGGAAGGGCAAAGGT+CGG | 0.590403 | 7.3:+60085395 | MS.gene97459:CDS |
TTTGCATGATGGGTTTAAAG+CGG | 0.591389 | 7.3:+60084764 | MS.gene97459:CDS |
GAATTGCTTAGTATTCATCC+GGG | 0.593506 | 7.3:+60085089 | MS.gene97459:CDS |
GGAATTCTCCATGGTATACA+TGG | 0.594647 | 7.3:+60085343 | MS.gene97459:CDS |
GCATGTGTCTAGTAATCCGA+TGG | 0.594832 | 7.3:+60085067 | MS.gene97459:CDS |
TGATTTCTTCGGTGGAGTCG+AGG | 0.595840 | 7.3:-60084068 | None:intergenic |
TTCGTCGTTGAAGAATTCGA+AGG | 0.600535 | 7.3:-60084010 | None:intergenic |
TGCGGTGGAGATATTTCAAG+TGG | 0.606922 | 7.3:+60085310 | MS.gene97459:CDS |
CACATCATCCATGTATACCA+TGG | 0.608257 | 7.3:-60085351 | None:intergenic |
TAACCTGGCCGAATAAGGGA+AGG | 0.609525 | 7.3:+60085384 | MS.gene97459:CDS |
ATGTGACAAAGAGGTTAACC+TGG | 0.611702 | 7.3:+60085369 | MS.gene97459:CDS |
AACAACCTCGACGAATCCGA+TGG | 0.614235 | 7.3:+60084036 | MS.gene97459:CDS |
TTGGTTTGATGAGGAAAGCG+GGG | 0.615065 | 7.3:+60084811 | MS.gene97459:CDS |
TCGACGACTCCATTGAAGGA+TGG | 0.615561 | 7.3:-60085157 | None:intergenic |
GTCACATGCCTTTGATCCTG+CGG | 0.618552 | 7.3:+60085292 | MS.gene97459:CDS |
AAGAGGTGCGGAATTCTCCA+TGG | 0.621328 | 7.3:+60085334 | MS.gene97459:CDS |
TTCTATAAAAGGGACGTGTG+CGG | 0.622155 | 7.3:-60084406 | None:intergenic |
AGTTGGATGAGGTTCAAAAG+GGG | 0.625113 | 7.3:+60084658 | MS.gene97459:CDS |
ACCTTCCCAATTCTAAAACC+AGG | 0.627242 | 7.3:-60085431 | None:intergenic |
AGCTTCGAAAGCCGAAACGG+CGG | 0.637708 | 7.3:-60084364 | None:intergenic |
AACCTCGAAAACTCACAACC+CGG | 0.647260 | 7.3:-60085107 | None:intergenic |
ATTTCAAGTGGAAAGAGGTG+CGG | 0.648317 | 7.3:+60085322 | MS.gene97459:CDS |
CAATTGCAATCGATTCGACA+CGG | 0.651781 | 7.3:-60084592 | None:intergenic |
ACATGGATGATGTGACAAAG+AGG | 0.653060 | 7.3:+60085360 | MS.gene97459:CDS |
GCTTGAAAAGAAGCATGATG+AGG | 0.654587 | 7.3:+60084617 | MS.gene97459:CDS |
TGAATACTAAGCAATTCCAT+CGG | 0.661643 | 7.3:-60085083 | None:intergenic |
ACATGCCTTTGATCCTGCGG+TGG | 0.670442 | 7.3:+60085295 | MS.gene97459:CDS |
AACCTGGCCGAATAAGGGAA+GGG | 0.673729 | 7.3:+60085385 | MS.gene97459:CDS |
AATTGGTTTGAGGTAAACGA+CGG | 0.689992 | 7.3:-60084216 | None:intergenic |
AGAGTAAGTTGAGAACACTA+GGG | 0.701061 | 7.3:+60084568 | MS.gene97459:CDS |
AAGCAGTGTTGAATTCGTGG+AGG | 0.727950 | 7.3:+60085204 | MS.gene97459:CDS |
GATTGCGTTTGTGTAAACGA+CGG | 0.786042 | 7.3:-60084294 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTGATTTAGATTTGAAA+GGG | + | chr7.3:60085015-60085034 | MS.gene97459:CDS | 15.0% |
!!! | TTTTTTGATTTAGATTTGAA+AGG | + | chr7.3:60085014-60085033 | MS.gene97459:CDS | 15.0% |
! | GAAAAGTTGTGTACAAATTA+GGG | - | chr7.3:60084509-60084528 | None:intergenic | 25.0% |
! | TTATGTAAGTAGTTTCTGTT+TGG | + | chr7.3:60085472-60085491 | MS.gene97459:CDS | 25.0% |
!! | TCACGTTTTCTTCTATAAAA+GGG | - | chr7.3:60084419-60084438 | None:intergenic | 25.0% |
!! | TTCACGTTTTCTTCTATAAA+AGG | - | chr7.3:60084420-60084439 | None:intergenic | 25.0% |
!! | TTTTGTCGTATGTTTGTTTA+GGG | + | chr7.3:60084910-60084929 | MS.gene97459:CDS | 25.0% |
!!! | AAGTTTACGAAGATTTTGAT+TGG | + | chr7.3:60084792-60084811 | MS.gene97459:CDS | 25.0% |
!!! | GTGTTGTTTATTCGAAAAAA+GGG | + | chr7.3:60084871-60084890 | MS.gene97459:CDS | 25.0% |
!!! | TTTTTCCTGGTTTTAGAATT+GGG | + | chr7.3:60085426-60085445 | MS.gene97459:CDS | 25.0% |
GGAAAAGTTGTGTACAAATT+AGG | - | chr7.3:60084510-60084529 | None:intergenic | 30.0% | |
TGAAATAAGCACTTTATCAG+TGG | - | chr7.3:60084445-60084464 | None:intergenic | 30.0% | |
TGAATACTAAGCAATTCCAT+CGG | - | chr7.3:60085086-60085105 | None:intergenic | 30.0% | |
! | CTTTTGTCGTATGTTTGTTT+AGG | + | chr7.3:60084909-60084928 | MS.gene97459:CDS | 30.0% |
! | GAGTGTTAAGGTTTTTGAAT+CGG | + | chr7.3:60084740-60084759 | MS.gene97459:CDS | 30.0% |
! | TAGTTGTTTGAAGCAATTGT+TGG | + | chr7.3:60085043-60085062 | MS.gene97459:CDS | 30.0% |
! | TGTACACAACTTTTCCATTT+GGG | + | chr7.3:60084514-60084533 | MS.gene97459:CDS | 30.0% |
! | TGTCTAAGAAGCTTTGTAAT+GGG | + | chr7.3:60084691-60084710 | MS.gene97459:CDS | 30.0% |
! | TTGTACACAACTTTTCCATT+TGG | + | chr7.3:60084513-60084532 | MS.gene97459:CDS | 30.0% |
! | TTGTCTAAGAAGCTTTGTAA+TGG | + | chr7.3:60084690-60084709 | MS.gene97459:CDS | 30.0% |
!! | GGTGTTGTTTATTCGAAAAA+AGG | + | chr7.3:60084870-60084889 | MS.gene97459:CDS | 30.0% |
!! | TGAGGTTGTTTGTTATTGTT+GGG | - | chr7.3:60083943-60083962 | None:intergenic | 30.0% |
!! | TGATGTTTTGTTGAGTGTTA+AGG | + | chr7.3:60084728-60084747 | MS.gene97459:CDS | 30.0% |
!! | TTGAGGTTGTTTGTTATTGT+TGG | - | chr7.3:60083944-60083963 | None:intergenic | 30.0% |
!! | TTTTTCGAATAAACAACACC+CGG | - | chr7.3:60084870-60084889 | None:intergenic | 30.0% |
!!! | AGATTTTGATTGGTTTGATG+AGG | + | chr7.3:60084802-60084821 | MS.gene97459:CDS | 30.0% |
!!! | GGTTTTAGTTTTGAAAGCTA+AGG | - | chr7.3:60083992-60084011 | None:intergenic | 30.0% |
!!! | GGTTTTGATTTGGTTAGTTT+TGG | + | chr7.3:60084942-60084961 | MS.gene97459:CDS | 30.0% |
!!! | GTTTGATGATGATGACTTTT+TGG | - | chr7.3:60084101-60084120 | None:intergenic | 30.0% |
!!! | GTTTTTCCTGGTTTTAGAAT+TGG | + | chr7.3:60085425-60085444 | MS.gene97459:CDS | 30.0% |
AAGTTGGATGAGGTTCAAAA+GGG | + | chr7.3:60084657-60084676 | MS.gene97459:CDS | 35.0% | |
GAATTGCTTAGTATTCATCC+GGG | + | chr7.3:60085089-60085108 | MS.gene97459:CDS | 35.0% | |
GGAATTGCTTAGTATTCATC+CGG | + | chr7.3:60085088-60085107 | MS.gene97459:CDS | 35.0% | |
GTTTGTTTAGGGATGTTTCA+GGG | + | chr7.3:60084921-60084940 | MS.gene97459:CDS | 35.0% | |
TGAAACATTTCGGAGATTTG+AGG | - | chr7.3:60083961-60083980 | None:intergenic | 35.0% | |
TGTTTGTTTAGGGATGTTTC+AGG | + | chr7.3:60084920-60084939 | MS.gene97459:CDS | 35.0% | |
! | AGAGTAAGTTGAGAACACTA+GGG | + | chr7.3:60084568-60084587 | MS.gene97459:CDS | 35.0% |
! | GAGATATTTCAAGTGGAAAG+AGG | + | chr7.3:60085317-60085336 | MS.gene97459:CDS | 35.0% |
! | TGTTCTATGAGGCATTTGTT+GGG | + | chr7.3:60085237-60085256 | MS.gene97459:CDS | 35.0% |
! | TTGTTCTATGAGGCATTTGT+TGG | + | chr7.3:60085236-60085255 | MS.gene97459:CDS | 35.0% |
! | TTTTCAGATGAGGAAGAAGT+TGG | + | chr7.3:60084641-60084660 | MS.gene97459:CDS | 35.0% |
! | TTTTCCATTTGGGTCTTCAT+TGG | + | chr7.3:60084524-60084543 | MS.gene97459:CDS | 35.0% |
!! | AATTGGTTTGAGGTAAACGA+CGG | - | chr7.3:60084219-60084238 | None:intergenic | 35.0% |
!! | ATGATGAGGTTTTTCAGATG+AGG | + | chr7.3:60084631-60084650 | MS.gene97459:CDS | 35.0% |
!! | GATGATGATGACTTTTTGGT+CGG | - | chr7.3:60084097-60084116 | None:intergenic | 35.0% |
!! | GGCGAATTTCTGAAACATTT+CGG | - | chr7.3:60083971-60083990 | None:intergenic | 35.0% |
!! | TTGAATCGGTTTTGCATGAT+GGG | + | chr7.3:60084754-60084773 | MS.gene97459:CDS | 35.0% |
!! | TTTGAATCGGTTTTGCATGA+TGG | + | chr7.3:60084753-60084772 | MS.gene97459:CDS | 35.0% |
!! | TTTGCATGATGGGTTTAAAG+CGG | + | chr7.3:60084764-60084783 | MS.gene97459:CDS | 35.0% |
!!! | GATGTTTCAGGGTTTTGATT+TGG | + | chr7.3:60084932-60084951 | MS.gene97459:CDS | 35.0% |
!!! | GGTTAGTTTTGGATTGAGTT+CGG | + | chr7.3:60084953-60084972 | MS.gene97459:CDS | 35.0% |
!!! | GTCGTCGATTTTCATTGATT+TGG | + | chr7.3:60085172-60085191 | MS.gene97459:CDS | 35.0% |
AAAATCGACGACTCCATTGA+AGG | - | chr7.3:60085164-60085183 | None:intergenic | 40.0% | |
ACATGGATGATGTGACAAAG+AGG | + | chr7.3:60085360-60085379 | MS.gene97459:CDS | 40.0% | |
AGTTGGATGAGGTTCAAAAG+GGG | + | chr7.3:60084658-60084677 | MS.gene97459:CDS | 40.0% | |
ATGTGACAAAGAGGTTAACC+TGG | + | chr7.3:60085369-60085388 | MS.gene97459:CDS | 40.0% | |
CACATCATCCATGTATACCA+TGG | - | chr7.3:60085354-60085373 | None:intergenic | 40.0% | |
GAAGAAGAATTGACGTCGAA+TGG | + | chr7.3:60084987-60085006 | MS.gene97459:CDS | 40.0% | |
GAAGGTAGTTATTCAATCGC+AGG | + | chr7.3:60085448-60085467 | MS.gene97459:CDS | 40.0% | |
GAAGTTGGATGAGGTTCAAA+AGG | + | chr7.3:60084656-60084675 | MS.gene97459:CDS | 40.0% | |
GAGACTAATCCATCCTTCAA+TGG | + | chr7.3:60085148-60085167 | MS.gene97459:CDS | 40.0% | |
GATTGCGTTTGTGTAAACGA+CGG | - | chr7.3:60084297-60084316 | None:intergenic | 40.0% | |
GGAATTCTCCATGGTATACA+TGG | + | chr7.3:60085343-60085362 | MS.gene97459:CDS | 40.0% | |
TTCGTCGTTGAAGAATTCGA+AGG | - | chr7.3:60084013-60084032 | None:intergenic | 40.0% | |
TTCTATAAAAGGGACGTGTG+CGG | - | chr7.3:60084409-60084428 | None:intergenic | 40.0% | |
TTGGTCGGTGATGATTTCTT+CGG | - | chr7.3:60084082-60084101 | None:intergenic | 40.0% | |
! | ATTTCAAGTGGAAAGAGGTG+CGG | + | chr7.3:60085322-60085341 | MS.gene97459:CDS | 40.0% |
! | CAGAGTAAGTTGAGAACACT+AGG | + | chr7.3:60084567-60084586 | MS.gene97459:CDS | 40.0% |
! | GCTTGAAAAGAAGCATGATG+AGG | + | chr7.3:60084617-60084636 | MS.gene97459:CDS | 40.0% |
! | GTCGTTGAGTTTGTTCTATG+AGG | + | chr7.3:60085226-60085245 | MS.gene97459:CDS | 40.0% |
!! | ACCTTCCCAATTCTAAAACC+AGG | - | chr7.3:60085434-60085453 | None:intergenic | 40.0% |
!! | ATTGGTTTGATGAGGAAAGC+GGG | + | chr7.3:60084810-60084829 | MS.gene97459:CDS | 40.0% |
!! | CAATTGCAATCGATTCGACA+CGG | - | chr7.3:60084595-60084614 | None:intergenic | 40.0% |
!! | GATTGGTTTGATGAGGAAAG+CGG | + | chr7.3:60084809-60084828 | MS.gene97459:CDS | 40.0% |
!!! | TCCTGGTTTTAGAATTGGGA+AGG | + | chr7.3:60085430-60085449 | MS.gene97459:CDS | 40.0% |
AAAAACCATCGGATTCGTCG+AGG | - | chr7.3:60084044-60084063 | None:intergenic | 45.0% | |
AACCTCGAAAACTCACAACC+CGG | - | chr7.3:60085110-60085129 | None:intergenic | 45.0% | |
AATAAGGGAAGGGCAAAGGT+CGG | + | chr7.3:60085395-60085414 | MS.gene97459:CDS | 45.0% | |
ACCTTTGCCCTTCCCTTATT+CGG | - | chr7.3:60085395-60085414 | None:intergenic | 45.0% | |
ACTTGAAATATCTCCACCGC+AGG | - | chr7.3:60085311-60085330 | None:intergenic | 45.0% | |
AGGTTAACCTGGCCGAATAA+GGG | + | chr7.3:60085380-60085399 | MS.gene97459:CDS | 45.0% | |
CGTGTCGAATCGATTGCAAT+TGG | + | chr7.3:60084593-60084612 | MS.gene97459:CDS | 45.0% | |
GATGAGGAAGAAGTTGGATG+AGG | + | chr7.3:60084647-60084666 | MS.gene97459:CDS | 45.0% | |
GCATGTGTCTAGTAATCCGA+TGG | + | chr7.3:60085067-60085086 | MS.gene97459:CDS | 45.0% | |
GCTTCCAATGAAGACCCAAA+TGG | - | chr7.3:60084531-60084550 | None:intergenic | 45.0% | |
GTCGAGGAGAGAAAAACCAT+CGG | - | chr7.3:60084055-60084074 | None:intergenic | 45.0% | |
GTCTTCATTGGAAGCTGAAG+TGG | + | chr7.3:60084536-60084555 | MS.gene97459:CDS | 45.0% | |
TGCGGTGGAGATATTTCAAG+TGG | + | chr7.3:60085310-60085329 | MS.gene97459:CDS | 45.0% | |
! | AAGCAGTGTTGAATTCGTGG+AGG | + | chr7.3:60085204-60085223 | MS.gene97459:CDS | 45.0% |
! | ACGAAGCAGTGTTGAATTCG+TGG | + | chr7.3:60085201-60085220 | MS.gene97459:CDS | 45.0% |
! | CTATGAGGCATTTGTTGGGA+TGG | + | chr7.3:60085241-60085260 | MS.gene97459:CDS | 45.0% |
! | TCGTTTCGGGTAGTGCTAAT+TGG | - | chr7.3:60084236-60084255 | None:intergenic | 45.0% |
! | TTGGTTTGATGAGGAAAGCG+GGG | + | chr7.3:60084811-60084830 | MS.gene97459:CDS | 45.0% |
!! | GGGTAGTGCTAATTGGTTTG+AGG | - | chr7.3:60084229-60084248 | None:intergenic | 45.0% |
!! | GTTTTGGATGGGGAAGAAGA+CGG | - | chr7.3:60084144-60084163 | None:intergenic | 45.0% |
!!! | AAGAGGGTGTCGTTTTGGAT+GGG | - | chr7.3:60084155-60084174 | None:intergenic | 45.0% |
!!! | GAAGAAGACGGTGTCGTTTT+GGG | - | chr7.3:60084132-60084151 | None:intergenic | 45.0% |
!!! | TGTAAACGACGGTGTCGTTT+TGG | - | chr7.3:60084286-60084305 | None:intergenic | 45.0% |
AACAACCTCGACGAATCCGA+TGG | + | chr7.3:60084036-60084055 | MS.gene97459:CDS | 50.0% | |
AACCTGGCCGAATAAGGGAA+GGG | + | chr7.3:60085385-60085404 | MS.gene97459:CDS | 50.0% | |
AGATCGAACGACGTCGTTTC+GGG | - | chr7.3:60084249-60084268 | None:intergenic | 50.0% | |
ATAAGGGAAGGGCAAAGGTC+GGG | + | chr7.3:60085396-60085415 | MS.gene97459:CDS | 50.0% | |
CGAAGCTTCGAAAGCCGAAA+CGG | - | chr7.3:60084370-60084389 | None:intergenic | 50.0% | |
GAGATCGAACGACGTCGTTT+CGG | - | chr7.3:60084250-60084269 | None:intergenic | 50.0% | |
GAGGTTAACCTGGCCGAATA+AGG | + | chr7.3:60085379-60085398 | MS.gene97459:CDS | 50.0% | |
GGACGTGTGCGGTTTGTAAT+TGG | - | chr7.3:60084398-60084417 | None:intergenic | 50.0% | |
GTCACATGCCTTTGATCCTG+CGG | + | chr7.3:60085292-60085311 | MS.gene97459:CDS | 50.0% | |
GTCGGTGATGATTTCTTCGG+TGG | - | chr7.3:60084079-60084098 | None:intergenic | 50.0% | |
TAACCTGGCCGAATAAGGGA+AGG | + | chr7.3:60085384-60085403 | MS.gene97459:CDS | 50.0% | |
TAGATCGTGCGACGTCGTTT+CGG | - | chr7.3:60084328-60084347 | None:intergenic | 50.0% | |
TATCTCCACCGCAGGATCAA+AGG | - | chr7.3:60085303-60085322 | None:intergenic | 50.0% | |
TCGACGACTCCATTGAAGGA+TGG | - | chr7.3:60085160-60085179 | None:intergenic | 50.0% | |
TGATTTCTTCGGTGGAGTCG+AGG | - | chr7.3:60084071-60084090 | None:intergenic | 50.0% | |
TTTGATGAGGAAAGCGGGGT+GGG | + | chr7.3:60084815-60084834 | MS.gene97459:CDS | 50.0% | |
! | AAGAGGTGCGGAATTCTCCA+TGG | + | chr7.3:60085334-60085353 | MS.gene97459:CDS | 50.0% |
! | ATCCGGGTTGTGAGTTTTCG+AGG | + | chr7.3:60085105-60085124 | MS.gene97459:CDS | 50.0% |
! | TTGGGATGGCTAGCTCGATA+TGG | + | chr7.3:60085255-60085274 | MS.gene97459:CDS | 50.0% |
!! | GTCGGGTTCACTGTTTTTCC+TGG | + | chr7.3:60085413-60085432 | MS.gene97459:CDS | 50.0% |
!!! | AACGACGGTGTCGTTTTGGT+TGG | - | chr7.3:60084204-60084223 | None:intergenic | 50.0% |
!!! | ACGACGGTGTCGTTTTGGTT+GGG | - | chr7.3:60084203-60084222 | None:intergenic | 50.0% |
!!! | AGAGGGTGTCGTTTTGGATG+GGG | - | chr7.3:60084154-60084173 | None:intergenic | 50.0% |
!!! | GAAGAGGAGGGTGTCGTTTT+GGG | - | chr7.3:60084180-60084199 | None:intergenic | 50.0% |
!!! | GAAGAGGGTGTCGTTTTGGA+TGG | - | chr7.3:60084156-60084175 | None:intergenic | 50.0% |
!!! | GGAAGAAGACGGTGTCGTTT+TGG | - | chr7.3:60084133-60084152 | None:intergenic | 50.0% |
!!! | GGTAAACGACGGTGTCGTTT+TGG | - | chr7.3:60084208-60084227 | None:intergenic | 50.0% |
!!! | GGTGTCGTTTTGGGTGAAGA+GGG | - | chr7.3:60084171-60084190 | None:intergenic | 50.0% |
!!! | GTTTTGGTTGGGGAAGAGGA+GGG | - | chr7.3:60084192-60084211 | None:intergenic | 50.0% |
!!! | TGTCGTTTTGGTTGGCGTGT+CGG | - | chr7.3:60084274-60084293 | None:intergenic | 50.0% |
!!! | TGTCGTTTTGGTTGGGGAAG+AGG | - | chr7.3:60084196-60084215 | None:intergenic | 50.0% |
ACATGCCTTTGATCCTGCGG+TGG | + | chr7.3:60085295-60085314 | MS.gene97459:CDS | 55.0% | |
AGATCGTGCGACGTCGTTTC+GGG | - | chr7.3:60084327-60084346 | None:intergenic | 55.0% | |
AGCTTCGAAAGCCGAAACGG+CGG | - | chr7.3:60084367-60084386 | None:intergenic | 55.0% | |
AGGAAAGCGGGGTGGGATTT+AGG | + | chr7.3:60084822-60084841 | MS.gene97459:CDS | 55.0% | |
ATCGATCTTCGCCGCCGTTT+CGG | + | chr7.3:60084353-60084372 | MS.gene97459:CDS | 55.0% | |
GCCGAATAAGGGAAGGGCAA+AGG | + | chr7.3:60085391-60085410 | MS.gene97459:CDS | 55.0% | |
GCTGCGAATGCTGTTCATCC+GGG | + | chr7.3:60084849-60084868 | MS.gene97459:CDS | 55.0% | |
GGCTGCGAATGCTGTTCATC+CGG | + | chr7.3:60084848-60084867 | MS.gene97459:CDS | 55.0% | |
GTTTGATGAGGAAAGCGGGG+TGG | + | chr7.3:60084814-60084833 | MS.gene97459:CDS | 55.0% | |
! | AGCGGGGTGGGATTTAGGTT+TGG | + | chr7.3:60084827-60084846 | MS.gene97459:CDS | 55.0% |
!!! | CGACGGTGTCGTTTTGGTTG+GGG | - | chr7.3:60084202-60084221 | None:intergenic | 55.0% |
!!! | CGGTGTCGTTTTGGGTGGAT+CGG | - | chr7.3:60084124-60084143 | None:intergenic | 55.0% |
!!! | CGTTTTGGTTGGGGAAGAGG+AGG | - | chr7.3:60084193-60084212 | None:intergenic | 55.0% |
!!! | GAAGACGGTGTCGTTTTGGG+TGG | - | chr7.3:60084129-60084148 | None:intergenic | 55.0% |
!!! | GGAAGAGGAGGGTGTCGTTT+TGG | - | chr7.3:60084181-60084200 | None:intergenic | 55.0% |
!!! | GGGTGAAGAGGGTGTCGTTT+TGG | - | chr7.3:60084160-60084179 | None:intergenic | 55.0% |
!!! | GGGTGTCGTTTTGGGTGAAG+AGG | - | chr7.3:60084172-60084191 | None:intergenic | 55.0% |
!!! | GGTGTCGTTTTGGGTGGATC+GGG | - | chr7.3:60084123-60084142 | None:intergenic | 55.0% |
TGCCCTTCCCTTATTCGGCC+AGG | - | chr7.3:60085390-60085409 | None:intergenic | 60.0% | |
! | TGCGACGTCGTTTCGGGTAG+TGG | - | chr7.3:60084321-60084340 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 60083925 | 60085502 | 60083925 | ID=MS.gene97459 |
chr7.3 | mRNA | 60083925 | 60085502 | 60083925 | ID=MS.gene97459.t1;Parent=MS.gene97459 |
chr7.3 | exon | 60083925 | 60085502 | 60083925 | ID=MS.gene97459.t1.exon1;Parent=MS.gene97459.t1 |
chr7.3 | CDS | 60083925 | 60085502 | 60083925 | ID=cds.MS.gene97459.t1;Parent=MS.gene97459.t1 |
Gene Sequence |
Protein sequence |