AlfalfaGEDB | MS.gene98272

M. sativa cultivar XinJiangDaYe / MS.gene98272

KEGG: K06901
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF00860.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98272.t1	XP_013460947.1	97	540	14	1	1	538	1	540	2.40E-294	1020.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98272.t1	Q84MA8	67.2	524	166	2	13	531	7	529	8.1e-203	708.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98272.t1	A0A072UZW0	97.0	540	14	1	1	538	1	540	1.7e-294	1020.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene98272	-0.806485	8.04E-50	-1.69E-46
MS.gene049222	MS.gene98272	-0.804093	2.55E-49	-1.69E-46
MS.gene04932	MS.gene98272	0.839634	1.41E-57	-1.69E-46
MS.gene049549	MS.gene98272	0.824865	6.40E-54	-1.69E-46
MS.gene050170	MS.gene98272	-0.810743	9.90E-51	-1.69E-46
MS.gene050647	MS.gene98272	0.802171	6.37E-49	-1.69E-46
MS.gene051138	MS.gene98272	0.812145	4.91E-51	-1.69E-46
MS.gene051364	MS.gene98272	0.806924	6.50E-50	-1.69E-46
MS.gene051440	MS.gene98272	0.811131	8.16E-51	-1.69E-46
MS.gene051651	MS.gene98272	0.808005	3.83E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene013405	MS.gene98272	PPI
MS.gene06502	MS.gene98272	PPI
MS.gene31058	MS.gene98272	PPI
MS.gene98272	MS.gene049377	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98272.t1	MTR_3g075120	97.037	540	14	1	1	538	1	540	0.0	1067
MS.gene98272.t1	MTR_3g094320	49.013	557	239	5	25	537	28	583	0.0	554
MS.gene98272.t1	MTR_7g072600	53.571	56	26	0	182	237	18	73	7.49e-14	67.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene98272.t1	AT5G50300	67.562	521	163	2	13	528	24	543	720
MS.gene98272.t1	AT5G50300	67.562	521	163	2	13	528	7	526	720
MS.gene98272.t1	AT3G10960	49.911	561	237	5	19	535	19	579	568

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Find 137 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTATCGACCCAGAAAC+TGG	0.321079	3.1:+61685275	MS.gene98272:CDS
AAAATCATTATAGCAAAAGC+AGG	0.540709	3.1:-61685977	None:intergenic
AAACTTTGAAGGTGAATATA+TGG	0.351162	3.1:+61685679	MS.gene98272:CDS
AAAGCTCCAAGCCAGAACTT+TGG	0.419444	3.1:-61685326	None:intergenic
AAAGTATCGACCCAGAAACT+GGG	0.559581	3.1:+61685276	MS.gene98272:CDS
AACAACAGGTGTTGACTCAA+TGG	0.559073	3.1:+61686156	MS.gene98272:CDS
AACAGGTGTTGACTCAATGG+TGG	0.650221	3.1:+61686159	MS.gene98272:CDS
AACCAAGGTGTTGGGCTTAT+TGG	0.202923	3.1:+61685215	MS.gene98272:CDS
AACTTCAATGGCTATTGTTT+TGG	0.253159	3.1:+61685058	MS.gene98272:CDS
AAGCTCCAAGCCAGAACTTT+GGG	0.337032	3.1:-61685325	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAACACATGGACTCAAA+TGG	+	chr3.1:61684614-61684633	MS.gene98272:CDS	30.0%
AAGTTGTGAAGGATATTGAT+TGG	+	chr3.1:61685933-61685952	MS.gene98272:CDS	30.0%
AGCCAAAACAAAAAATGACT+TGG	+	chr3.1:61684884-61684903	MS.gene98272:CDS	30.0%
ATAAGATTGAATCAACTGCA+TGG	+	chr3.1:61685522-61685541	MS.gene98272:CDS	30.0%
CTAACTTATTCCATAGCAAA+TGG	+	chr3.1:61686007-61686026	MS.gene98272:CDS	30.0%
GACTGGTATAATGTATACTA+TGG	+	chr3.1:61685625-61685644	MS.gene98272:CDS	30.0%
GATGAAAAAGGAAACTTTGA+AGG	+	chr3.1:61685668-61685687	MS.gene98272:CDS	30.0%
TAAGATTGAATCAACTGCAT+GGG	+	chr3.1:61685523-61685542	MS.gene98272:CDS	30.0%
TTTCAAGGCTAAAAAACACA+TGG	+	chr3.1:61684604-61684623	MS.gene98272:CDS	30.0%
AATGGTATTGTTGCTGGTAT+TGG	+	chr3.1:61686025-61686044	MS.gene98272:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	61684576	61686192	61684576	ID=MS.gene98272
chr3.1	mRNA	61684576	61686192	61684576	ID=MS.gene98272.t1;Parent=MS.gene98272
chr3.1	exon	61684576	61686192	61684576	ID=MS.gene98272.t1.exon1;Parent=MS.gene98272.t1
chr3.1	CDS	61684576	61686192	61684576	ID=cds.MS.gene98272.t1;Parent=MS.gene98272.t1

Gene Sequence

>MS.gene98272

ATGGGAGGAGGGAAAGCATGTGGTGTATTTTCAAGGCTAAAAAACACATGGACTCAAATGGAAAAATCCATAAACAACGCCGTTACAAACAGCTTCATAGGATCCTACTTCAAGTTACAACAAAGAAAAACATGCTTCACTAAAGAACTACGCGCCGCAACTGCCACTTTTCTAACCATGGCTTACATCATAACCGTCAACGCAACCATCCTAACCGGCTCAGGCGGAACCTGCTCCGTTGCAGACTGTTCGCCTACTGCAACACCAGATTGCACACTGAAGCCTAATGCTGGATATGAAGCTTGTCTAGCCAAAACAAAAAATGACTTGGTGGTTGCAACTTCTGTAACTGCTATGGTTTCTTCTGTTGCAATGGGATTTTTAGCTAACCTTCCTTTAGGTCTTGCTCCAGGTATGGGGCCCAATGCTTATTTAGCTTTTAACCTTGTTGGTTATCATGGAAGTGGCTCAATCTCATATCAAACTTCAATGGCTATTGTTTTGGTTGAAGGTTGTGCTTTTCTTTTAGCTTCTGCTTTTGGTTTAAGAGGTAAGCTTGCTAAGCTTATACCAAAATCTATTAGGCTTGCATGTGCTGCTGGTATTGGGCTTTTTATTGCTTTTGTGGGCCTTCAAGTTAACCAAGGTGTTGGGCTTATTGGGCCTGATCCGGCTAATTTGGTTACGATGACGGCCTGTAAAAGTATCGACCCAGAAACTGGGGCTTGCTTGGGTGGTAAGTTGCAAAGCCCAAAGTTCTGGCTTGGAGCTTTTGGTTTTCTTATCACAAGCTACGGTTTAATGAAGAATGTTAAAGGTAGTATGATTTATGGTATTCTCTTTGTGACATTTGTGTCTTGGTTTAGACACACTGAGGTTACTTATTTTCCTGATACACCACTTGGTGATGGGAATTTTAGTTATTTCAAACAAATTGTTGATTTTCATAAGATTGAATCAACTGCATGGGTTTTTAACTTTGGTGATTTTAATAAAAGGGAAGTTTGGGAGGCATTGGCTACTTTGTTTTATGTTGATGTAATTGCTATGACTGGTATAATGTATACTATGGCTGAGATTGGTGAGTTTGTGGATGAAAAAGGAAACTTTGAAGGTGAATATATGGCATATATTGTTGATGCAGCTGGTACTATTGTAGGGTCAGCTTTAGGTGTTACAACAACTGCAACATTTGTGGAATCATCAGCTGGGATGAGAGAGGGTGGTAGGACAGGATTAACGGCTGTGATCATTGGATTGTATTTCTTTTTGTCATTGTTTTTCACCCCTTTGTTGTCAAGTGTTCCTCCATGGGCTATAGGTCCTTCACTAGTGATGGTTGGGGTAATGATGATGAAAGTTGTGAAGGATATTGATTGGACTAATATAAAAGAAGCAGTTCCTGCTTTTGCTATAATGATTTTAATGCCTCTAACTTATTCCATAGCAAATGGTATTGTTGCTGGTATTGGTCTTTATGTTGCTCTTAGTCTTTTTGACTATGCTGCAAGCATCATAAATTGGTTGGGGAAAATGAGGAGAAGGATGATCAAGGAGCATAACCAAGTGTCGGCCACTGCAACAACAGGTGTTGACTCAATGGTGGAAATCATTTGA

Protein sequence

>MS.gene98272.t1

MGGGKACGVFSRLKNTWTQMEKSINNAVTNSFIGSYFKLQQRKTCFTKELRAATATFLTMAYIITVNATILTGSGGTCSVADCSPTATPDCTLKPNAGYEACLAKTKNDLVVATSVTAMVSSVAMGFLANLPLGLAPGMGPNAYLAFNLVGYHGSGSISYQTSMAIVLVEGCAFLLASAFGLRGKLAKLIPKSIRLACAAGIGLFIAFVGLQVNQGVGLIGPDPANLVTMTACKSIDPETGACLGGKLQSPKFWLGAFGFLITSYGLMKNVKGSMIYGILFVTFVSWFRHTEVTYFPDTPLGDGNFSYFKQIVDFHKIESTAWVFNFGDFNKREVWEALATLFYVDVIAMTGIMYTMAEIGEFVDEKGNFEGEYMAYIVDAAGTIVGSALGVTTTATFVESSAGMREGGRTGLTAVIIGLYFFLSLFFTPLLSSVPPWAIGPSLVMVGVMMMKVVKDIDWTNIKEAVPAFAIMILMPLTYSIANGIVAGIGLYVALSLFDYAASIINWLGKMRRRMIKEHNQVSATATTGVDSMVEII