AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99595


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99595.t1 MTR_5g057670 97.906 191 4 0 1 191 1 191 2.66e-137 381
MS.gene99595.t1 MTR_5g057335 97.906 191 4 0 1 191 1 191 2.66e-137 381
MS.gene99595.t1 MTR_4g089100 46.386 166 88 1 6 171 2 166 1.18e-50 162
MS.gene99595.t1 MTR_2g079830 46.707 167 89 0 6 172 2 168 1.22e-46 151
MS.gene99595.t1 MTR_1g109660 40.761 184 106 1 7 190 4 184 3.26e-44 145
MS.gene99595.t1 MTR_1g109700 35.326 184 117 1 7 190 4 185 1.73e-32 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99595.t1 AT1G13380 71.728 191 51 1 1 191 1 188 4.23e-89 259
MS.gene99595.t1 AT4G27435 47.059 170 90 0 6 175 2 171 3.27e-53 168
MS.gene99595.t1 AT3G15480 44.848 165 90 1 6 169 2 166 3.66e-49 157
MS.gene99595.t1 AT1G61065 46.061 165 87 2 20 183 16 179 1.78e-47 153
MS.gene99595.t1 AT1G52910 43.636 165 92 1 6 169 2 166 2.58e-44 145
MS.gene99595.t1 AT1G68220 39.560 182 106 3 10 188 5 185 8.26e-39 132
MS.gene99595.t1 AT5G17210 28.916 166 115 2 3 167 2 165 7.28e-12 62.0

Find 43 sgRNAs with CRISPR-Local

Find 399 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTCCTATTTCTTCTTTC+AGG 0.118110 5.4:+45200099 MS.gene99595:CDS
ATAAATAATTCCCCGGTATT+TGG 0.197206 5.4:-45200978 None:intergenic
TTCAGGTGAATCACTGCTTA+TGG 0.206084 5.4:+45200116 MS.gene99595:CDS
TCAGATGTTGCAACTGGTTA+TGG 0.298329 5.4:+45200069 MS.gene99595:CDS
TTTGGGAGGCCTTTAACCCC+TGG 0.341537 5.4:+45200159 MS.gene99595:CDS
TCAGGTGAATCACTGCTTAT+GGG 0.342216 5.4:+45200117 MS.gene99595:CDS
ATTCACCTGAAAGAAGAAAT+AGG 0.343625 5.4:-45200104 None:intergenic
GTTTGTTGCTTAGTTGCATT+TGG 0.366885 5.4:+45196077 MS.gene99595:CDS
AGGAAAGGCATCTTCATTAC+CGG 0.367227 5.4:+45201028 MS.gene99595:CDS
ACTTCTCCTGTGAAAGTTTG+AGG 0.369772 5.4:+45201008 MS.gene99595:CDS
CAATATGTTTCATTTGTTCC+TGG 0.388667 5.4:-45200036 None:intergenic
AGAAGAAAGAAAATATATAA+TGG 0.392892 5.4:-45200199 None:intergenic
TTGGGAGGCCTTTAACCCCT+GGG 0.398501 5.4:+45200160 MS.gene99595:CDS
CACTTTCTCAGAAGACCAAT+CGG 0.400256 5.4:+45201125 MS.gene99595:CDS
TCCCCGGTATTTGGTGTGAT+AGG 0.408796 5.4:-45200969 None:intergenic
GTGACAAAGTGCATGTGCTT+TGG 0.415268 5.4:+45200141 MS.gene99595:CDS
GCCTTTCCTCAAACTTTCAC+AGG 0.425540 5.4:-45201014 None:intergenic
TACAGTTCAGATGTTGCAAC+TGG 0.428312 5.4:+45200063 MS.gene99595:CDS
TGACAAAGTGCATGTGCTTT+GGG 0.430960 5.4:+45200142 MS.gene99595:CDS
TGTTCCTGGAGTTGTGTGAA+TGG 0.437125 5.4:-45200022 None:intergenic
CAAGGTCAATCATGCATGTC+CGG 0.491279 5.4:-45201170 None:intergenic
ATGCCTATCACACCAAATAC+CGG 0.505251 5.4:+45200966 MS.gene99595:CDS
CGATTGGTCTTCTGAGAAAG+TGG 0.515883 5.4:-45201124 None:intergenic
GCAGAATCATGCTTAATAGC+TGG 0.536563 5.4:+45200932 MS.gene99595:CDS
AATCGGGTTAGTTCCACGAT+TGG 0.543860 5.4:+45201142 MS.gene99595:CDS
TGCCTATCACACCAAATACC+GGG 0.552373 5.4:+45200967 MS.gene99595:CDS
TCCTGTGAAAGTTTGAGGAA+AGG 0.553407 5.4:+45201013 MS.gene99595:CDS
ACTTTCTCAGAAGACCAATC+GGG 0.557107 5.4:+45201126 MS.gene99595:CDS
TACAACGATGAAAATTGCTC+CGG 0.580379 5.4:-45201047 None:intergenic
GGAACCATTCACACAACTCC+AGG 0.583570 5.4:+45200018 MS.gene99595:CDS
AGTTCCACGATTGGAATGAC+CGG 0.588851 5.4:+45201151 MS.gene99595:CDS
TGGGAGGCCTTTAACCCCTG+GGG 0.589713 5.4:+45200161 MS.gene99595:CDS
AATCGTGGAACTAACCCGAT+TGG 0.605332 5.4:-45201140 None:intergenic
TCTTCTTCTCTCAGCAGCAA+CGG 0.606197 5.4:-45196105 None:intergenic
TCTGAGCATAAATAATTCCC+CGG 0.610710 5.4:-45200985 None:intergenic
GTTGCAACTGGTTATGGAGT+GGG 0.613168 5.4:+45200075 MS.gene99595:CDS
GGGAGGCCTTTAACCCCTGG+GGG 0.642259 5.4:+45200162 MS.gene99595:CDS
CTTCTGAGAAAGTGGAGTAG+TGG 0.649249 5.4:-45201116 None:intergenic
ATGTCCGGTCATTCCAATCG+TGG 0.657041 5.4:-45201155 None:intergenic
CTACTACATGTACTTCACAA+AGG 0.667346 5.4:+45201090 MS.gene99595:CDS
GCCTATCACACCAAATACCG+GGG 0.675980 5.4:+45200968 MS.gene99595:CDS
TGTTGCAACTGGTTATGGAG+TGG 0.682410 5.4:+45200074 MS.gene99595:CDS
CAAAGTGCATGTGCTTTGGG+AGG 0.685983 5.4:+45200145 MS.gene99595:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTATATTATTAATTA+AGG + chr5.4:45198386-45198405 MS.gene99595:intron 0.0%
!! AAAATATTTGAGAAATTTGT+AGG + chr5.4:45197435-45197454 MS.gene99595:intron 15.0%
!! AGAAGAAAGAAAATATATAA+TGG - chr5.4:45200202-45200221 None:intergenic 15.0%
!! ATAAAATAGATTCAGAATAA+AGG + chr5.4:45197758-45197777 MS.gene99595:intron 15.0%
!! ATAGAAATAAAAAAAAACGA+CGG + chr5.4:45197651-45197670 MS.gene99595:intron 15.0%
!! TAAAATAGATTCAGAATAAA+GGG + chr5.4:45197759-45197778 MS.gene99595:intron 15.0%
!! TCAATATCAAATATAATTTC+TGG - chr5.4:45199314-45199333 None:intergenic 15.0%
!! TCATAATTGATATAATGAAA+CGG + chr5.4:45196912-45196931 MS.gene99595:intron 15.0%
!! TGATAAAAATGAGATATTAA+GGG - chr5.4:45197350-45197369 None:intergenic 15.0%
!! TTGATAAAAATGAGATATTA+AGG - chr5.4:45197351-45197370 None:intergenic 15.0%
!!! ATTATTGGAAATTTCATTTT+TGG + chr5.4:45200349-45200368 MS.gene99595:intron 15.0%
!!! CTTCATATTTTACATTAATT+TGG + chr5.4:45199968-45199987 MS.gene99595:intron 15.0%
!!! TCATCTTTTATTGATTTATT+TGG + chr5.4:45200374-45200393 MS.gene99595:intron 15.0%
!!! TTATATATTTTCTTTCTTCT+TGG + chr5.4:45200202-45200221 MS.gene99595:CDS 15.0%
!!! TTTTTATCAAAATATCTAGT+AGG + chr5.4:45197361-45197380 MS.gene99595:intron 15.0%
!! AAAACAAAAAACACATATAG+TGG - chr5.4:45200752-45200771 None:intergenic 20.0%
!! AACCAAAAAAAGATAAATGA+AGG - chr5.4:45198949-45198968 None:intergenic 20.0%
!! AACTGAAAATACAATATGAA+GGG + chr5.4:45197925-45197944 MS.gene99595:intron 20.0%
!! AAGCAAAATCTAAACAAAAA+TGG + chr5.4:45199387-45199406 MS.gene99595:intron 20.0%
!! AATCTAAACAAAAATGGAAT+AGG + chr5.4:45199393-45199412 MS.gene99595:intron 20.0%
!! ACTAACAAAGAACATATTTA+TGG + chr5.4:45200562-45200581 MS.gene99595:intron 20.0%
!! AGAAAACATGCATAATAAAA+AGG - chr5.4:45199624-45199643 None:intergenic 20.0%
!! ATGTAAAAGAATTTGTAGAA+GGG - chr5.4:45199653-45199672 None:intergenic 20.0%
!! ATTTGCTCAATAAATTATTG+AGG + chr5.4:45197679-45197698 MS.gene99595:intron 20.0%
!! TAACTGAAAATACAATATGA+AGG + chr5.4:45197924-45197943 MS.gene99595:intron 20.0%
!! TTATTATAAATGGAAGATGA+AGG + chr5.4:45196538-45196557 MS.gene99595:intron 20.0%
!!! AACCTTCATTTATCTTTTTT+TGG + chr5.4:45198944-45198963 MS.gene99595:intron 20.0%
!!! AAGGTTATTTCAAAGAAAAA+AGG - chr5.4:45198930-45198949 None:intergenic 20.0%
!!! AGTTATTTTACACTAATTGA+GGG + chr5.4:45196354-45196373 MS.gene99595:intron 20.0%
!!! CTTTTTGTGAAAATAAATCA+GGG + chr5.4:45199158-45199177 MS.gene99595:intron 20.0%
!!! GTGATTGAAGTTTTAAAAAT+GGG + chr5.4:45197462-45197481 MS.gene99595:intron 20.0%
!!! TAGTTATTTTACACTAATTG+AGG + chr5.4:45196353-45196372 MS.gene99595:intron 20.0%
!!! TATCTGTTTAAGTTTAAGTT+TGG + chr5.4:45196192-45196211 MS.gene99595:intron 20.0%
!!! TATTGATTTATTTGGTTGAT+TGG + chr5.4:45200382-45200401 MS.gene99595:intron 20.0%
!!! TCATTTTGACTGTAAAAAAA+AGG + chr5.4:45198557-45198576 MS.gene99595:intron 20.0%
!!! TCTTTTTGTGAAAATAAATC+AGG + chr5.4:45199157-45199176 MS.gene99595:intron 20.0%
!!! TGATTGAAGTTTTAAAAATG+GGG + chr5.4:45197463-45197482 MS.gene99595:intron 20.0%
!!! TGTGATTGAAGTTTTAAAAA+TGG + chr5.4:45197461-45197480 MS.gene99595:intron 20.0%
!!! TTTCCAATAATTTTTTTCAC+TGG - chr5.4:45200340-45200359 None:intergenic 20.0%
!!! TTTTTTGAACATGCTAAATT+AGG + chr5.4:45196385-45196404 MS.gene99595:intron 20.0%
! AACATATTTATACACTCAAC+AGG - chr5.4:45196799-45196818 None:intergenic 25.0%
! AACCAAATAACAAATATGAG+AGG + chr5.4:45197733-45197752 MS.gene99595:intron 25.0%
! AAGCACATTTAACATTTAAC+AGG + chr5.4:45196862-45196881 MS.gene99595:intron 25.0%
! AAGTTATGAAAAACAATGGA+GGG - chr5.4:45199513-45199532 None:intergenic 25.0%
! AATAAAGGGCAGAATATAAT+AGG + chr5.4:45197773-45197792 MS.gene99595:intron 25.0%
! AATGCAAAAGATAGACTTAA+TGG + chr5.4:45197622-45197641 MS.gene99595:intron 25.0%
! AATGGATGATAAGGTTAATT+TGG - chr5.4:45196505-45196524 None:intergenic 25.0%
! AATTTACCATGTTCTTGAAA+TGG + chr5.4:45198097-45198116 MS.gene99595:intron 25.0%
! ACCAAATAACAAATATGAGA+GGG + chr5.4:45197734-45197753 MS.gene99595:intron 25.0%
! AGCACATTTAACATTTAACA+GGG + chr5.4:45196863-45196882 MS.gene99595:intron 25.0%
! AGTGAAGTTATGAAAAACAA+TGG - chr5.4:45199517-45199536 None:intergenic 25.0%
! ATGAAACAATGATTCCTATT+TGG - chr5.4:45200728-45200747 None:intergenic 25.0%
! ATGCATAATAAAAAGGATGA+TGG - chr5.4:45199617-45199636 None:intergenic 25.0%
! ATTGTATAGGATGGTTTATT+AGG + chr5.4:45196216-45196235 MS.gene99595:intron 25.0%
! ATTTCAAGAACATGGTAAAT+TGG - chr5.4:45198098-45198117 None:intergenic 25.0%
! CAAATTTATTGTGATCTATG+AGG + chr5.4:45200821-45200840 MS.gene99595:intron 25.0%
! CATGTAAAAGAATTTGTAGA+AGG - chr5.4:45199654-45199673 None:intergenic 25.0%
! TATTTAAGCACTAGAAAGAA+GGG + chr5.4:45199000-45199019 MS.gene99595:intron 25.0%
! TATTTGTGTCGAAGAAATAA+TGG + chr5.4:45197219-45197238 MS.gene99595:intron 25.0%
! TCAAAATGAAGAAGAAGAAA+GGG - chr5.4:45198546-45198565 None:intergenic 25.0%
! TGTAAAAGAATTTGTAGAAG+GGG - chr5.4:45199652-45199671 None:intergenic 25.0%
! TGTATGCTTTAATGTTTCAT+CGG + chr5.4:45199926-45199945 MS.gene99595:intron 25.0%
! TGTCCAGTGAAAAAAATTAT+TGG + chr5.4:45200334-45200353 MS.gene99595:intron 25.0%
! TGTTAAATGTTAAATGTGCT+TGG - chr5.4:45196863-45196882 None:intergenic 25.0%
! TGTTCATGATGATTATAAGA+AGG + chr5.4:45196305-45196324 MS.gene99595:intron 25.0%
! TTAAATGGAATATGATGGTT+TGG + chr5.4:45197498-45197517 MS.gene99595:intron 25.0%
! TTTGGTTAGAATAACCAAAT+AGG + chr5.4:45200711-45200730 MS.gene99595:intron 25.0%
!! AAAAAAGATTCTCTAGAAGT+GGG + chr5.4:45197191-45197210 MS.gene99595:intron 25.0%
!! AAGGGATATTTCATATTTTC+TGG + chr5.4:45199262-45199281 MS.gene99595:intron 25.0%
!! CTACAAATTCTTTTACATGA+AGG + chr5.4:45199655-45199674 MS.gene99595:intron 25.0%
!! CTGTCAATTTTATCTTCATA+GGG + chr5.4:45199765-45199784 MS.gene99595:intron 25.0%
!! GACTTTTAAATGGAATATGA+TGG + chr5.4:45197493-45197512 MS.gene99595:intron 25.0%
!! GTTTAAGTTTGGAATTGTAT+AGG + chr5.4:45196203-45196222 MS.gene99595:intron 25.0%
!! TTATAGTTCTATAAAGAGCA+TGG - chr5.4:45199420-45199439 None:intergenic 25.0%
!!! GATCTCTTTAAAATGAACAA+TGG - chr5.4:45196158-45196177 None:intergenic 25.0%
!!! GATTGAAGTTTTAAAAATGG+GGG + chr5.4:45197464-45197483 MS.gene99595:intron 25.0%
!!! GTTATTTTACACTAATTGAG+GGG + chr5.4:45196355-45196374 MS.gene99595:intron 25.0%
!!! TAGATTGATTGTGTTGTTTA+AGG + chr5.4:45199824-45199843 MS.gene99595:intron 25.0%
!!! TTGTTTAAGGTATTTTGTGA+GGG + chr5.4:45199837-45199856 MS.gene99595:intron 25.0%
!!! TTTTTGTTTTGCTACATTGA+AGG - chr5.4:45200436-45200455 None:intergenic 25.0%
!!! TTTTTTCTTCCTTTTTTCCA+GGG + chr5.4:45200895-45200914 MS.gene99595:intron 25.0%
!!! TTTTTTTCTTCCTTTTTTCC+AGG + chr5.4:45200894-45200913 MS.gene99595:intron 25.0%
AAATGAGTAAGACACACTTT+GGG - chr5.4:45200464-45200483 None:intergenic 30.0%
AAGGGAAAAAAGAATATGTG+AGG - chr5.4:45199719-45199738 None:intergenic 30.0%
AATAACAGTGAGCACATAAA+TGG - chr5.4:45196523-45196542 None:intergenic 30.0%
AATGAGATATTAAGGGTTCT+AGG - chr5.4:45197343-45197362 None:intergenic 30.0%
AATTTGTGTGGAAGAAGATT+TGG + chr5.4:45197528-45197547 MS.gene99595:intron 30.0%
ACTGAGAATTTCTTGTTCAT+TGG + chr5.4:45197839-45197858 MS.gene99595:intron 30.0%
AGGGAAAAAAGAATATGTGA+GGG - chr5.4:45199718-45199737 None:intergenic 30.0%
AGTAAAACTAGAATTAGGCA+TGG + chr5.4:45199865-45199884 MS.gene99595:intron 30.0%
AGTAAAACTCGAATTAGTCA+TGG + chr5.4:45199888-45199907 MS.gene99595:intron 30.0%
AGTAGAAAAGACAGTACAAT+AGG - chr5.4:45198028-45198047 None:intergenic 30.0%
ATAAATAATTCCCCGGTATT+TGG - chr5.4:45200981-45201000 None:intergenic 30.0%
ATGTCAAAAAGAAACATAGC+AGG + chr5.4:45199793-45199812 MS.gene99595:intron 30.0%
ATGTTCTTTGTTAGTCAACT+TGG - chr5.4:45200557-45200576 None:intergenic 30.0%
ATTCACCTGAAAGAAGAAAT+AGG - chr5.4:45200107-45200126 None:intergenic 30.0%
CAATATGTTTCATTTGTTCC+TGG - chr5.4:45200039-45200058 None:intergenic 30.0%
CACAAGTTATGTAGTGAAAT+AGG + chr5.4:45197997-45198016 MS.gene99595:intron 30.0%
CATGGAGTAAAACTAGAATT+AGG + chr5.4:45199860-45199879 MS.gene99595:intron 30.0%
CCTATGAAGATAAAATTGAC+AGG - chr5.4:45199767-45199786 None:intergenic 30.0%
CTATTTAAGCACTAGAAAGA+AGG + chr5.4:45198999-45199018 MS.gene99595:intron 30.0%
GAAGTTATGAAAAACAATGG+AGG - chr5.4:45199514-45199533 None:intergenic 30.0%
GTAAAATAACTAATTCCCCT+CGG - chr5.4:45196345-45196364 None:intergenic 30.0%
GTCAAAATGAAGAAGAAGAA+AGG - chr5.4:45198547-45198566 None:intergenic 30.0%
GTGCTCACTGTTATTATAAA+TGG + chr5.4:45196528-45196547 MS.gene99595:intron 30.0%
TAACATTTAACAGGGATGAT+GGG + chr5.4:45196871-45196890 MS.gene99595:intron 30.0%
TGAAAATAAATCAGGGAATG+AGG + chr5.4:45199165-45199184 MS.gene99595:intron 30.0%
TGCTCAGATGAAATAGAATT+AGG - chr5.4:45200252-45200271 None:intergenic 30.0%
TGTTCTTGAAATGATGATAC+TGG + chr5.4:45196251-45196270 MS.gene99595:intron 30.0%
TTAACATTTAACAGGGATGA+TGG + chr5.4:45196870-45196889 MS.gene99595:intron 30.0%
TTCACATATGCATTCAGTAA+GGG + chr5.4:45199244-45199263 MS.gene99595:intron 30.0%
TTTGGCTACTTAAATTTGTG+TGG + chr5.4:45197516-45197535 MS.gene99595:intron 30.0%
! AAGTTTGGAATTGTATAGGA+TGG + chr5.4:45196207-45196226 MS.gene99595:intron 30.0%
! AATAAAAAGGATGATGGCAT+AGG - chr5.4:45199611-45199630 None:intergenic 30.0%
! AATTTTCATCGTTGTAACGA+TGG + chr5.4:45201054-45201073 MS.gene99595:CDS 30.0%
! ATAAAAAGGATGATGGCATA+GGG - chr5.4:45199610-45199629 None:intergenic 30.0%
! ATTTTGCTTCCAGTATCATA+GGG - chr5.4:45199376-45199395 None:intergenic 30.0%
! CCTGTCAATTTTATCTTCAT+AGG + chr5.4:45199764-45199783 MS.gene99595:intron 30.0%
! CTTCTTTCTAGTGCTTAAAT+AGG - chr5.4:45199001-45199020 None:intergenic 30.0%
! GAAAAAAGATTCTCTAGAAG+TGG + chr5.4:45197190-45197209 MS.gene99595:intron 30.0%
! GGATATTTCATATTTTCTGG+TGG + chr5.4:45199265-45199284 MS.gene99595:intron 30.0%
! TCTTCACTAGTGAATCATTT+TGG + chr5.4:45200854-45200873 MS.gene99595:intron 30.0%
! TGCTAGAATACATTTTGCAT+TGG + chr5.4:45198852-45198871 MS.gene99595:intron 30.0%
! TGTTTTCTTTTGATGTTGCA+TGG + chr5.4:45198233-45198252 MS.gene99595:intron 30.0%
! TTTTATCCGTTAATTGTGTG+AGG - chr5.4:45200633-45200652 None:intergenic 30.0%
!! ATTTTTGGAGGAATTAGAAG+TGG + chr5.4:45196995-45197014 MS.gene99595:intron 30.0%
!! GTTGTTTAAGGTATTTTGTG+AGG + chr5.4:45199836-45199855 MS.gene99595:intron 30.0%
!! TTTTTGGAGGAATTAGAAGT+GGG + chr5.4:45196996-45197015 MS.gene99595:intron 30.0%
!!! ACTCATTTTGGCTATAGATT+TGG + chr5.4:45200693-45200712 MS.gene99595:intron 30.0%
AAATCACTATGTGCACTAAG+TGG + chr5.4:45198063-45198082 MS.gene99595:intron 35.0%
AACAAGGCAATGGAGTAAAA+GGG - chr5.4:45199737-45199756 None:intergenic 35.0%
AAGTGTGTCTTACTCATTTC+AGG + chr5.4:45200465-45200484 MS.gene99595:intron 35.0%
ACAATGCCTCACACAATTAA+CGG + chr5.4:45200624-45200643 MS.gene99595:intron 35.0%
AGTGTGTCTTACTCATTTCA+GGG + chr5.4:45200466-45200485 MS.gene99595:intron 35.0%
AGTTCCTCCAAATGTCAATT+TGG - chr5.4:45196415-45196434 None:intergenic 35.0%
ATTAGCTCAACGAAAACTCA+AGG - chr5.4:45197266-45197285 None:intergenic 35.0%
CTACTACATGTACTTCACAA+AGG + chr5.4:45201090-45201109 MS.gene99595:CDS 35.0%
CTATAGCCAAAATGAGTGAA+GGG - chr5.4:45200690-45200709 None:intergenic 35.0%
GAAATGAGTAAGACACACTT+TGG - chr5.4:45200465-45200484 None:intergenic 35.0%
GAAGAAGGTAATTGACAACA+TGG - chr5.4:45197321-45197340 None:intergenic 35.0%
GAGCACATAAATGGATGATA+AGG - chr5.4:45196514-45196533 None:intergenic 35.0%
GATTAGAGATCTAGAGATCT+AGG - chr5.4:45198508-45198527 None:intergenic 35.0%
GGTCGAATCACATATATGAA+CGG - chr5.4:45199293-45199312 None:intergenic 35.0%
GTAGAGAGAAGAACATCAAT+AGG + chr5.4:45199056-45199075 MS.gene99595:intron 35.0%
GTTCACATATGCATTCAGTA+AGG + chr5.4:45199243-45199262 MS.gene99595:intron 35.0%
GTTCCTCCAAATGTCAATTT+GGG - chr5.4:45196414-45196433 None:intergenic 35.0%
TAACAAGGCAATGGAGTAAA+AGG - chr5.4:45199738-45199757 None:intergenic 35.0%
TACAACGATGAAAATTGCTC+CGG - chr5.4:45201050-45201069 None:intergenic 35.0%
TACTCATTTCAGGGTTCAAA+CGG + chr5.4:45200475-45200494 MS.gene99595:intron 35.0%
TATGTTGTACCATTGCTTGA+AGG - chr5.4:45198822-45198841 None:intergenic 35.0%
TCTATAGCCAAAATGAGTGA+AGG - chr5.4:45200691-45200710 None:intergenic 35.0%
TCTGAGCATAAATAATTCCC+CGG - chr5.4:45200988-45201007 None:intergenic 35.0%
TCTTGTTCATTGGAAAAACG+AGG + chr5.4:45197849-45197868 MS.gene99595:intron 35.0%
TTACCTTCTACTGTGTAAAG+AGG + chr5.4:45198974-45198993 MS.gene99595:intron 35.0%
TTAGCTCAACGAAAACTCAA+GGG - chr5.4:45197265-45197284 None:intergenic 35.0%
TTCAAGCATAGTTGTCAAAG+CGG + chr5.4:45198271-45198290 MS.gene99595:intron 35.0%
TTGTGTCGAAGAAATAATGG+TGG + chr5.4:45197222-45197241 MS.gene99595:intron 35.0%
TTTATTCACACGAAGCTTCT+TGG + chr5.4:45200770-45200789 MS.gene99595:intron 35.0%
! ACATTTGCTACTTGTTTGGA+AGG + chr5.4:45196953-45196972 MS.gene99595:intron 35.0%
! ACTCCATTGCCTTGTTAATT+GGG + chr5.4:45199741-45199760 MS.gene99595:intron 35.0%
! AGAACAGAGATGAGATTTTG+TGG + chr5.4:45198591-45198610 MS.gene99595:intron 35.0%
! CTTAGTGCACATAGTGATTT+TGG - chr5.4:45198063-45198082 None:intergenic 35.0%
! GATTTTGCTTCCAGTATCAT+AGG - chr5.4:45199377-45199396 None:intergenic 35.0%
! GCTTTCCTATTTCTTCTTTC+AGG + chr5.4:45200099-45200118 MS.gene99595:CDS 35.0%
! GGAAACATTTGCTACTTGTT+TGG + chr5.4:45196949-45196968 MS.gene99595:intron 35.0%
! GTTTGTTGCTTAGTTGCATT+TGG + chr5.4:45196077-45196096 MS.gene99595:CDS 35.0%
! TACTCCATTGCCTTGTTAAT+TGG + chr5.4:45199740-45199759 MS.gene99595:intron 35.0%
!! GCCCTCTCATATTTGTTATT+TGG - chr5.4:45197738-45197757 None:intergenic 35.0%
!! GGGGAGATTTGACTTTTAAA+TGG + chr5.4:45197483-45197502 MS.gene99595:intron 35.0%
!! GGTTGATTGGTTTAAGTATG+TGG + chr5.4:45200395-45200414 MS.gene99595:intron 35.0%
!! TATTAAGGGTTCTAGGAAGA+AGG - chr5.4:45197336-45197355 None:intergenic 35.0%
AAAAACAATGGAGGGTCTGT+CGG - chr5.4:45199505-45199524 None:intergenic 40.0%
AAGCAATGGTACAACATACC+GGG + chr5.4:45198824-45198843 MS.gene99595:intron 40.0%
AAGGTAAATGTATCAGAGCC+GGG + chr5.4:45196557-45196576 MS.gene99595:intron 40.0%
AAGTGGGATGTTAACTCGTT+CGG + chr5.4:45197012-45197031 MS.gene99595:intron 40.0%
AATCAGGTTCCTTCTCATCT+AGG - chr5.4:45199475-45199494 None:intergenic 40.0%
AATTTCCTAAACTCCGACTG+TGG + chr5.4:45197058-45197077 MS.gene99595:intron 40.0%
ACAACATAGCCTTCAAGCAA+TGG + chr5.4:45198810-45198829 MS.gene99595:intron 40.0%
ACTTCTCCTGTGAAAGTTTG+AGG + chr5.4:45201008-45201027 MS.gene99595:CDS 40.0%
ACTTTCTCAGAAGACCAATC+GGG + chr5.4:45201126-45201145 MS.gene99595:CDS 40.0%
AGAAAGAAGGGTTGAGTAGA+TGG + chr5.4:45199012-45199031 MS.gene99595:intron 40.0%
AGAGCCAAACTAACGAACAA+AGG + chr5.4:45200518-45200537 MS.gene99595:intron 40.0%
AGGATTTGGAAATGTGAGGA+GGG - chr5.4:45199579-45199598 None:intergenic 40.0%
ATCAGGTTCCTTCTCATCTA+GGG - chr5.4:45199474-45199493 None:intergenic 40.0%
ATGCCTATCACACCAAATAC+CGG + chr5.4:45200966-45200985 MS.gene99595:CDS 40.0%
ATTGACAGGCCCAATTAACA+AGG - chr5.4:45199753-45199772 None:intergenic 40.0%
ATTTCCTAAACTCCGACTGT+GGG + chr5.4:45197059-45197078 MS.gene99595:intron 40.0%
CAAGCAATGGTACAACATAC+CGG + chr5.4:45198823-45198842 MS.gene99595:intron 40.0%
CACGCTAATTTCCTCTACTA+TGG - chr5.4:45197708-45197727 None:intergenic 40.0%
CACTTTCTCAGAAGACCAAT+CGG + chr5.4:45201125-45201144 MS.gene99595:CDS 40.0%
CATCAATAGGTCAAACCACT+AGG + chr5.4:45199069-45199088 MS.gene99595:intron 40.0%
CTCTGAATTCCCTATGATAC+TGG + chr5.4:45199364-45199383 MS.gene99595:intron 40.0%
GAAAAGTAGCCCTGGAAAAA+AGG - chr5.4:45200907-45200926 None:intergenic 40.0%
GAAGGCTATGTTGTCAATAG+CGG - chr5.4:45198804-45198823 None:intergenic 40.0%
GAAGGTAAATGTATCAGAGC+CGG + chr5.4:45196556-45196575 MS.gene99595:intron 40.0%
GAGGATAGCTCAATAGTTAG+AGG + chr5.4:45199034-45199053 MS.gene99595:intron 40.0%
GAGTTTAGGAAATTCTCCCT+CGG - chr5.4:45197052-45197071 None:intergenic 40.0%
GCAAAATGTATTCTAGCACC+AGG - chr5.4:45198850-45198869 None:intergenic 40.0%
GCAACACCATTTCAAGAACA+TGG - chr5.4:45198106-45198125 None:intergenic 40.0%
GCAGAATCATGCTTAATAGC+TGG + chr5.4:45200932-45200951 MS.gene99595:CDS 40.0%
GCTTTGACAACTATGCTTGA+AGG - chr5.4:45198272-45198291 None:intergenic 40.0%
GGGAAGTGAAAGAGAAAAAC+AGG - chr5.4:45199698-45199717 None:intergenic 40.0%
GTGTCCTTTGTTCGTTAGTT+TGG - chr5.4:45200525-45200544 None:intergenic 40.0%
TACAGTTCAGATGTTGCAAC+TGG + chr5.4:45200063-45200082 MS.gene99595:CDS 40.0%
TATTGAGGAAGCCATAGTAG+AGG + chr5.4:45197694-45197713 MS.gene99595:intron 40.0%
TCAGATGTTGCAACTGGTTA+TGG + chr5.4:45200069-45200088 MS.gene99595:CDS 40.0%
TCAGGTGAATCACTGCTTAT+GGG + chr5.4:45200117-45200136 MS.gene99595:CDS 40.0%
TCCTGTGAAAGTTTGAGGAA+AGG + chr5.4:45201013-45201032 MS.gene99595:CDS 40.0%
TGACAAAGTGCATGTGCTTT+GGG + chr5.4:45200142-45200161 MS.gene99595:CDS 40.0%
TGTGAAGAAATAGCGAAGAG+AGG - chr5.4:45199997-45200016 None:intergenic 40.0%
TTCAGGTGAATCACTGCTTA+TGG + chr5.4:45200116-45200135 MS.gene99595:CDS 40.0%
TTGGATCTCATCCTAAAAGC+TGG - chr5.4:45196844-45196863 None:intergenic 40.0%
TTTCCAGTCAACTGTGGTAT+TGG - chr5.4:45196454-45196473 None:intergenic 40.0%
! AATGTCTAGAACTCTCCTAG+TGG - chr5.4:45199087-45199106 None:intergenic 40.0%
! ACACAACCCTTCACTCATTT+TGG + chr5.4:45200681-45200700 MS.gene99595:intron 40.0%
! TTGATAACCCCTAGATGAGA+AGG + chr5.4:45199463-45199482 MS.gene99595:intron 40.0%
!! AAAAACGAGGTCTCTGGAAT+AGG + chr5.4:45197862-45197881 MS.gene99595:intron 40.0%
!! AAAACGAGGTCTCTGGAATA+GGG + chr5.4:45197863-45197882 MS.gene99595:intron 40.0%
!! AGGAAAGGCATCTTCATTAC+CGG + chr5.4:45201028-45201047 MS.gene99595:CDS 40.0%
!! CTAGGAGAGTTCTAGACATT+TGG + chr5.4:45199087-45199106 MS.gene99595:intron 40.0%
!! CTCTTCGCTATTTCTTCACA+GGG + chr5.4:45199997-45200016 MS.gene99595:intron 40.0%
!! GAAGGGCAGTTTTTGTTTGA+TGG + chr5.4:45197942-45197961 MS.gene99595:intron 40.0%
!! TAAGGTATTTTGTGAGGGCA+TGG + chr5.4:45199842-45199861 MS.gene99595:intron 40.0%
!! TAATGCTGATTTCCCACAGT+CGG - chr5.4:45197074-45197093 None:intergenic 40.0%
!! TCTCTTCGCTATTTCTTCAC+AGG + chr5.4:45199996-45200015 MS.gene99595:intron 40.0%
!!! TTTTTCCAGGGCTACTTTTC+TGG + chr5.4:45200907-45200926 MS.gene99595:intron 40.0%
AAAACAATGGAGGGTCTGTC+GGG - chr5.4:45199504-45199523 None:intergenic 45.0%
AAAGGGGAAATGGCAACACA+GGG - chr5.4:45198171-45198190 None:intergenic 45.0%
AAGAAGGGTTGAGTAGATGG+AGG + chr5.4:45199015-45199034 MS.gene99595:intron 45.0%
AAGGATTGCGATGTGGGAAT+TGG + chr5.4:45196582-45196601 MS.gene99595:intron 45.0%
AATCGTGGAACTAACCCGAT+TGG - chr5.4:45201143-45201162 None:intergenic 45.0%
AATGTATCAGAGCCGGGTTA+AGG + chr5.4:45196563-45196582 MS.gene99595:intron 45.0%
AGAATGATACGCTACTGTGC+CGG - chr5.4:45198894-45198913 None:intergenic 45.0%
AGACCAAGAGGTCATAGGTT+AGG - chr5.4:45199114-45199133 None:intergenic 45.0%
AGGCAAAAGCGGAACAAAAG+CGG - chr5.4:45198706-45198725 None:intergenic 45.0%
AGGCCACCCAAATTGACATT+TGG + chr5.4:45196405-45196424 MS.gene99595:intron 45.0%
AGGCCCAATTAACAAGGCAA+TGG - chr5.4:45199747-45199766 None:intergenic 45.0%
AGTGGGATGTTAACTCGTTC+GGG + chr5.4:45197013-45197032 MS.gene99595:intron 45.0%
AGTTCCACGATTGGAATGAC+CGG + chr5.4:45201151-45201170 MS.gene99595:CDS 45.0%
ATAGGGAATTGGGGAGGATT+TGG - chr5.4:45199593-45199612 None:intergenic 45.0%
ATTTCCCACAGTCGGAGTTT+AGG - chr5.4:45197066-45197085 None:intergenic 45.0%
CATTGGAAAAACGAGGTCTC+TGG + chr5.4:45197856-45197875 MS.gene99595:intron 45.0%
CCACCCAAATTGACATTTGG+AGG + chr5.4:45196408-45196427 MS.gene99595:intron 45.0%
CCTCCAAATGTCAATTTGGG+TGG - chr5.4:45196411-45196430 None:intergenic 45.0%
GAAACGGAGTGTGTCTATCA+TGG + chr5.4:45196928-45196947 MS.gene99595:intron 45.0%
GAAGAAATAGCGAAGAGAGG+AGG - chr5.4:45199994-45200013 None:intergenic 45.0%
GAGGATTTGGAAATGTGAGG+AGG - chr5.4:45199580-45199599 None:intergenic 45.0%
GCCTTTCCTCAAACTTTCAC+AGG - chr5.4:45201017-45201036 None:intergenic 45.0%
GGGAAATCACATTAGACCGA+GGG + chr5.4:45197033-45197052 MS.gene99595:intron 45.0%
GGTCCTCTTTACACAGTAGA+AGG - chr5.4:45198980-45198999 None:intergenic 45.0%
GTGACAAAGTGCATGTGCTT+TGG + chr5.4:45200141-45200160 MS.gene99595:CDS 45.0%
GTTGCAACTGGTTATGGAGT+GGG + chr5.4:45200075-45200094 MS.gene99595:CDS 45.0%
TAGTTGTCAAAGCGGAAACG+CGG + chr5.4:45198279-45198298 MS.gene99595:intron 45.0%
TCACAGTTTCCAGTCAACTG+TGG - chr5.4:45196460-45196479 None:intergenic 45.0%
TCAGGTTCCTTCTCATCTAG+GGG - chr5.4:45199473-45199492 None:intergenic 45.0%
TCTTCTTCTCTCAGCAGCAA+CGG - chr5.4:45196108-45196127 None:intergenic 45.0%
TGACCAATACCACAGTTGAC+TGG + chr5.4:45196448-45196467 MS.gene99595:intron 45.0%
TGCCTATCACACCAAATACC+GGG + chr5.4:45200967-45200986 MS.gene99595:CDS 45.0%
TGTTCCTGGAGTTGTGTGAA+TGG - chr5.4:45200025-45200044 None:intergenic 45.0%
TGTTGCAACTGGTTATGGAG+TGG + chr5.4:45200074-45200093 MS.gene99595:CDS 45.0%
TTCATCTGAGCACGCTGATA+CGG + chr5.4:45200260-45200279 MS.gene99595:intron 45.0%
TTGTCAATAGCGGTCTAACG+CGG - chr5.4:45198794-45198813 None:intergenic 45.0%
! AAAAGCTGGCTCAAAGGATG+AGG - chr5.4:45196830-45196849 None:intergenic 45.0%
! AAAGCTGGCTCAAAGGATGA+GGG - chr5.4:45196829-45196848 None:intergenic 45.0%
! AATAGGGAAGTTTCTGGAGG+TGG + chr5.4:45197879-45197898 MS.gene99595:intron 45.0%
! AGGATGATGGCATAGGGAAT+TGG - chr5.4:45199604-45199623 None:intergenic 45.0%
! CATCCTAAAAGCTGGCTCAA+AGG - chr5.4:45196836-45196855 None:intergenic 45.0%
! CATCCTTTGAGCCAGCTTTT+AGG + chr5.4:45196830-45196849 MS.gene99595:intron 45.0%
! CTTCTGAGAAAGTGGAGTAG+TGG - chr5.4:45201119-45201138 None:intergenic 45.0%
! CTTTTACATGAAGGCCTCGA+TGG + chr5.4:45199664-45199683 MS.gene99595:intron 45.0%
! GATGATGGCATAGGGAATTG+GGG - chr5.4:45199602-45199621 None:intergenic 45.0%
! GGATGATGGCATAGGGAATT+GGG - chr5.4:45199603-45199622 None:intergenic 45.0%
! TACTTGTTTGGAAGGAGCGT+GGG + chr5.4:45196961-45196980 MS.gene99595:intron 45.0%
! TAGTTTGTCCCACATCGTTC+AGG + chr5.4:45196664-45196683 MS.gene99595:intron 45.0%
! TGGAATAGGGAAGTTTCTGG+AGG + chr5.4:45197876-45197895 MS.gene99595:intron 45.0%
! TGGACTGCATGTCATTTGTC+CGG + chr5.4:45198872-45198891 MS.gene99595:intron 45.0%
!! AATCGGGTTAGTTCCACGAT+TGG + chr5.4:45201142-45201161 MS.gene99595:CDS 45.0%
!! AGGCACTGTGTTTTAAACCG+AGG + chr5.4:45196325-45196344 MS.gene99595:intron 45.0%
!! CGATTGGTCTTCTGAGAAAG+TGG - chr5.4:45201127-45201146 None:intergenic 45.0%
!! CGTTAGTTTGGCTCTCGAAT+GGG - chr5.4:45200513-45200532 None:intergenic 45.0%
!! CTCTGGAATAGGGAAGTTTC+TGG + chr5.4:45197873-45197892 MS.gene99595:intron 45.0%
!! GCACTGTGTTTTAAACCGAG+GGG + chr5.4:45196327-45196346 MS.gene99595:intron 45.0%
!! GGCACTGTGTTTTAAACCGA+GGG + chr5.4:45196326-45196345 MS.gene99595:intron 45.0%
!! GTCAACTGTGGTATTGGTCA+AGG - chr5.4:45196448-45196467 None:intergenic 45.0%
!! TCGTTAGTTTGGCTCTCGAA+TGG - chr5.4:45200514-45200533 None:intergenic 45.0%
!!! GTGATGGGGACTATTTTTGG+AGG + chr5.4:45196983-45197002 MS.gene99595:intron 45.0%
!!! TGGGTGATGGGGACTATTTT+TGG + chr5.4:45196980-45196999 MS.gene99595:intron 45.0%
AAACAATGGAGGGTCTGTCG+GGG - chr5.4:45199503-45199522 None:intergenic 50.0%
AACAGGAACCTGAGCGATGT+GGG - chr5.4:45196782-45196801 None:intergenic 50.0%
AACAGGCTTGAAAGCCATCG+AGG - chr5.4:45199681-45199700 None:intergenic 50.0%
AGCCACCCCAAAAATTGACG+CGG + chr5.4:45198310-45198329 MS.gene99595:intron 50.0%
AGGGAGACGAGTATACCAGA+GGG - chr5.4:45199560-45199579 None:intergenic 50.0%
AGGTGGAATGTGAGGTGAGA+TGG + chr5.4:45197896-45197915 MS.gene99595:intron 50.0%
ATGTATTCTAGCACCAGGCC+CGG - chr5.4:45198845-45198864 None:intergenic 50.0%
ATGTCCGGTCATTCCAATCG+TGG - chr5.4:45201158-45201177 None:intergenic 50.0%
ATTCGTGTCGTGAGACCAAG+AGG - chr5.4:45199126-45199145 None:intergenic 50.0%
CAAAGGGGAAATGGCAACAC+AGG - chr5.4:45198172-45198191 None:intergenic 50.0%
CCACATCGCAATCCTTAACC+CGG - chr5.4:45196578-45196597 None:intergenic 50.0%
CCTTCACTTGCGCATGCAAA+GGG - chr5.4:45198188-45198207 None:intergenic 50.0%
CGGGAAATCACATTAGACCG+AGG + chr5.4:45197032-45197051 MS.gene99595:intron 50.0%
CGGGTTAAGGATTGCGATGT+GGG + chr5.4:45196576-45196595 MS.gene99595:intron 50.0%
CTACTTGTTTGGAAGGAGCG+TGG + chr5.4:45196960-45196979 MS.gene99595:intron 50.0%
CTCGATTCTGTTACACCCTC+TGG + chr5.4:45199542-45199561 MS.gene99595:intron 50.0%
CTTCACTTGCGCATGCAAAG+GGG - chr5.4:45198187-45198206 None:intergenic 50.0%
GAACAAAAGCGGGTCAACAC+GGG - chr5.4:45198695-45198714 None:intergenic 50.0%
GCCTATCACACCAAATACCG+GGG + chr5.4:45200968-45200987 MS.gene99595:CDS 50.0%
GCGATGTGGGAATTTGACCA+AGG + chr5.4:45196589-45196608 MS.gene99595:intron 50.0%
GGAACAAAAGCGGGTCAACA+CGG - chr5.4:45198696-45198715 None:intergenic 50.0%
GGAACCATTCACACAACTCC+AGG + chr5.4:45200018-45200037 MS.gene99595:CDS 50.0%
GGACCTAACCTATGACCTCT+TGG + chr5.4:45199108-45199127 MS.gene99595:intron 50.0%
GGCAAAAGCGGAACAAAAGC+GGG - chr5.4:45198705-45198724 None:intergenic 50.0%
GGGGAGGATTTGGAAATGTG+AGG - chr5.4:45199583-45199602 None:intergenic 50.0%
GGTGGAATGTGAGGTGAGAT+GGG + chr5.4:45197897-45197916 MS.gene99595:intron 50.0%
GTGGAATGTGAGGTGAGATG+GGG + chr5.4:45197898-45197917 MS.gene99595:intron 50.0%
TCGGGTTAAGGATTGCGATG+TGG + chr5.4:45196696-45196715 MS.gene99595:intron 50.0%
TCGTGAGACCAAGAGGTCAT+AGG - chr5.4:45199119-45199138 None:intergenic 50.0%
TGCAACCAGAAAAGTAGCCC+TGG - chr5.4:45200915-45200934 None:intergenic 50.0%
TGGAATGTGAGGTGAGATGG+GGG + chr5.4:45197899-45197918 MS.gene99595:intron 50.0%
TTGCGCATGCAAAGGGGAAA+TGG - chr5.4:45198181-45198200 None:intergenic 50.0%
TTGTTAGTCCCACATCGCTC+AGG + chr5.4:45196771-45196790 MS.gene99595:intron 50.0%
! CAAAGTGCATGTGCTTTGGG+AGG + chr5.4:45200145-45200164 MS.gene99595:CDS 50.0%
! CAGAGGGTGTAACAGAATCG+AGG - chr5.4:45199544-45199563 None:intergenic 50.0%
! GTTTCTGGAGGTGGAATGTG+AGG + chr5.4:45197888-45197907 MS.gene99595:intron 50.0%
!! GTGGTATTGGTCAAGGTCTC+AGG - chr5.4:45196441-45196460 None:intergenic 50.0%
!! TCCCCGGTATTTGGTGTGAT+AGG - chr5.4:45200972-45200991 None:intergenic 50.0%
ACCAAGCTCGATTTCCCCCA+GGG - chr5.4:45200179-45200198 None:intergenic 55.0%
AGTCGCGCGTTAGGCAAAAG+CGG - chr5.4:45198717-45198736 None:intergenic 55.0%
ATGGTACAACATACCGGGCC+TGG + chr5.4:45198829-45198848 MS.gene99595:intron 55.0%
CAACAGGAACCTGAGCGATG+TGG - chr5.4:45196783-45196802 None:intergenic 55.0%
CCCTTTGCATGCGCAAGTGA+AGG + chr5.4:45198185-45198204 MS.gene99595:intron 55.0%
CCGGGTTAAGGATTGCGATG+TGG + chr5.4:45196575-45196594 MS.gene99595:intron 55.0%
CGATTTCCCCCAGGGGTTAA+AGG - chr5.4:45200171-45200190 None:intergenic 55.0%
GAGGGAGACGAGTATACCAG+AGG - chr5.4:45199561-45199580 None:intergenic 55.0%
GATGGCATAGGGAATTGGGG+AGG - chr5.4:45199599-45199618 None:intergenic 55.0%
GCAATCCTTAACCCGACTCC+CGG - chr5.4:45196692-45196711 None:intergenic 55.0%
GCCTTCACTTGCGCATGCAA+AGG - chr5.4:45198189-45198208 None:intergenic 55.0%
GGAATGTGAGGTGAGATGGG+GGG + chr5.4:45197900-45197919 MS.gene99595:intron 55.0%
GGCAAAAAGCGGGTCAATGC+GGG - chr5.4:45198674-45198693 None:intergenic 55.0%
GGGCAAAAAGCGGGTCAATG+CGG - chr5.4:45198675-45198694 None:intergenic 55.0%
GGGTCAACACGGGCAAAAAG+CGG - chr5.4:45198685-45198704 None:intergenic 55.0%
GGGTCAATGCGGGCAAAAAG+CGG - chr5.4:45198664-45198683 None:intergenic 55.0%
GGTCAACACGGGCAAAAAGC+GGG - chr5.4:45198684-45198703 None:intergenic 55.0%
GGTCAATGCGGGCAAAAAGC+GGG - chr5.4:45198663-45198682 None:intergenic 55.0%
TCCCGGAACCTGAACGATGT+GGG - chr5.4:45196675-45196694 None:intergenic 55.0%
TTGGGAGGCCTTTAACCCCT+GGG + chr5.4:45200160-45200179 MS.gene99595:CDS 55.0%
TTTGGGAGGCCTTTAACCCC+TGG + chr5.4:45200159-45200178 MS.gene99595:CDS 55.0%
! ACCGCGCCGCGTCAATTTTT+GGG - chr5.4:45198319-45198338 None:intergenic 55.0%
! ATCGTTCAGGTTCCGGGAGT+CGG + chr5.4:45196677-45196696 MS.gene99595:intron 55.0%
! CTTTTGCCTAACGCGCGACT+CGG + chr5.4:45198717-45198736 MS.gene99595:intron 55.0%
! GCTGGCGCTTTTACATGACG+CGG + chr5.4:45198352-45198371 MS.gene99595:intron 55.0%
! GTCCCACATCGTTCAGGTTC+CGG + chr5.4:45196670-45196689 MS.gene99595:intron 55.0%
! TACCGCGCCGCGTCAATTTT+TGG - chr5.4:45198320-45198339 None:intergenic 55.0%
! TCCCACATCGTTCAGGTTCC+GGG + chr5.4:45196671-45196690 MS.gene99595:intron 55.0%
! TTGGAAGGAGCGTGGGTGAT+GGG + chr5.4:45196968-45196987 MS.gene99595:intron 55.0%
! TTTGGAAGGAGCGTGGGTGA+TGG + chr5.4:45196967-45196986 MS.gene99595:intron 55.0%
!! GAGGGTGTGGGTGTTGAAGT+TGG + chr5.4:45196626-45196645 MS.gene99595:intron 55.0%
AAGGCCCACGCTAGACGTGA+GGG + chr5.4:45196608-45196627 MS.gene99595:intron 60.0%
AATGGAGGGTCTGTCGGGGT+AGG - chr5.4:45199499-45199518 None:intergenic 60.0%
AATTGACGCGGCGCGGTAAG+CGG + chr5.4:45198322-45198341 MS.gene99595:intron 60.0%
AGGTTCCGGGAGTCGGGTTA+AGG + chr5.4:45196684-45196703 MS.gene99595:intron 60.0%
ATGGAGGGTCTGTCGGGGTA+GGG - chr5.4:45199498-45199517 None:intergenic 60.0%
CACACCCTCACGTCTAGCGT+GGG - chr5.4:45196615-45196634 None:intergenic 60.0%
CCAAGCTCGATTTCCCCCAG+GGG - chr5.4:45200178-45200197 None:intergenic 60.0%
CCCCAAAAATTGACGCGGCG+CGG + chr5.4:45198315-45198334 MS.gene99595:intron 60.0%
CTCCCGGAACCTGAACGATG+TGG - chr5.4:45196676-45196695 None:intergenic 60.0%
GACCAAGCTCGATTTCCCCC+AGG - chr5.4:45200180-45200199 None:intergenic 60.0%
GCGATGTGGGAATTGGACCC+AGG + chr5.4:45196710-45196729 MS.gene99595:intron 60.0%
GGCAAAAAGCGGGTCAACGC+GGG - chr5.4:45198653-45198672 None:intergenic 60.0%
GGGCAAAAAGCGGGTCAACG+CGG - chr5.4:45198654-45198673 None:intergenic 60.0%
GGGTCAACGCGGGCAAAAAG+CGG - chr5.4:45198643-45198662 None:intergenic 60.0%
GGTCAACGCGGGCAAAAAGC+GGG - chr5.4:45198642-45198661 None:intergenic 60.0%
GTCTGTCGGGGTAGGGAATC+AGG - chr5.4:45199491-45199510 None:intergenic 60.0%
TGGGAGGCCTTTAACCCCTG+GGG + chr5.4:45200161-45200180 MS.gene99595:CDS 60.0%
! CACGCTAGACGTGAGGGTGT+GGG + chr5.4:45196614-45196633 MS.gene99595:intron 60.0%
! CCGCGCCGCGTCAATTTTTG+GGG - chr5.4:45198318-45198337 None:intergenic 60.0%
! TCGTTCAGGTTCCGGGAGTC+GGG + chr5.4:45196678-45196697 MS.gene99595:intron 60.0%
! TGGAAGGAGCGTGGGTGATG+GGG + chr5.4:45196969-45196988 MS.gene99595:intron 60.0%
!! CGCCGCGTCAATTTTTGGGG+TGG - chr5.4:45198315-45198334 None:intergenic 60.0%
ATTGACGCGGCGCGGTAAGC+GGG + chr5.4:45198323-45198342 MS.gene99595:intron 65.0%
ATTGGACCCAGGCCCACGCT+AGG + chr5.4:45196721-45196740 MS.gene99595:intron 65.0%
CAAGGCCCACGCTAGACGTG+AGG + chr5.4:45196607-45196626 MS.gene99595:intron 65.0%
CCACACCCTCACGTCTAGCG+TGG - chr5.4:45196616-45196635 None:intergenic 65.0%
CCACGCTAGACGTGAGGGTG+TGG + chr5.4:45196613-45196632 MS.gene99595:intron 65.0%
CCCCTGGGGGAAATCGAGCT+TGG + chr5.4:45200175-45200194 MS.gene99595:CDS 65.0%
CTCACGTCTAGCGTGGGCCT+TGG - chr5.4:45196609-45196628 None:intergenic 65.0%
GGGAGGCCTTTAACCCCTGG+GGG + chr5.4:45200162-45200181 MS.gene99595:CDS 65.0%
GTCAAAGCGGAAACGCGGCG+CGG + chr5.4:45198284-45198303 MS.gene99595:intron 65.0%
ACCCACGCTCACGCCTAGCG+TGG - chr5.4:45196737-45196756 None:intergenic 70.0%
ACGCGACCGAGTCGCGCGTT+AGG - chr5.4:45198726-45198745 None:intergenic 70.0%
CCCACGCTAGGCGTGAGCGT+GGG + chr5.4:45196733-45196752 MS.gene99595:intron 70.0%
CCCACGCTCACGCCTAGCGT+GGG - chr5.4:45196736-45196755 None:intergenic 70.0%
CGGTCGCGTTCTGACGCGCT+AGG + chr5.4:45198737-45198756 MS.gene99595:intron 70.0%
CTCACGCCTAGCGTGGGCCT+GGG - chr5.4:45196730-45196749 None:intergenic 70.0%
GGTCTAACGCGGCGCGATCG+CGG - chr5.4:45198783-45198802 None:intergenic 70.0%
GCCCACGCTAGGCGTGAGCG+TGG + chr5.4:45196732-45196751 MS.gene99595:intron 75.0%
GCTCACGCCTAGCGTGGGCC+TGG - chr5.4:45196731-45196750 None:intergenic 75.0%
! AACGCGGCGCGATCGCGGCG+CGG - chr5.4:45198778-45198797 None:intergenic 80.0%
! GCGGTAAGCGGGCGCGACGC+TGG + chr5.4:45198334-45198353 MS.gene99595:intron 80.0%
! GGCGCGATCGCGGCGCGGAG+CGG - chr5.4:45198773-45198792 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 45196032 45201183 45196032 ID=MS.gene99595
chr5.4 mRNA 45196032 45201183 45196032 ID=MS.gene99595.t1;Parent=MS.gene99595
chr5.4 exon 45196032 45196133 45196032 ID=MS.gene99595.t1.exon1;Parent=MS.gene99595.t1
chr5.4 CDS 45196032 45196133 45196032 ID=cds.MS.gene99595.t1;Parent=MS.gene99595.t1
chr5.4 exon 45200018 45200223 45200018 ID=MS.gene99595.t1.exon2;Parent=MS.gene99595.t1
chr5.4 CDS 45200018 45200223 45200018 ID=cds.MS.gene99595.t1;Parent=MS.gene99595.t1
chr5.4 exon 45200916 45201183 45200916 ID=MS.gene99595.t1.exon3;Parent=MS.gene99595.t1
chr5.4 CDS 45200916 45201183 45200916 ID=cds.MS.gene99595.t1;Parent=MS.gene99595.t1
Gene Sequence

>MS.gene99595

ATGGCAGAGGGAAGAGGTTCTACTCTTGTGCATCTTTTAGTCATTGTTTGTTGCTTAGTTGCATTTGGTTTTGCCGTTGCTGCTGAGAGAAGAAGAAGTGTTGTAAGTTACTATTCTCTCTCTCCATTGTTCATTTTAAAGAGATCTATGTTAGTTATTGTATCTGTTTAAGTTTAAGTTTGGAATTGTATAGGATGGTTTATTAGGTTTTGTTAACTTTGTTCTTGAAATGATGATACTGGTAAGTTTCTTTGATTTTCTGTTTATTGAATTTGTTCATGATGATTATAAGAAGGCACTGTGTTTTAAACCGAGGGGAATTAGTTATTTTACACTAATTGAGGGGAATTATTTTTTTTGAACATGCTAAATTAGGCCACCCAAATTGACATTTGGAGGAACTGAACCTGAGACCTTGACCAATACCACAGTTGACTGGAAACTGTGAGTGAAAGCAAAATATAATTTTACCAAATTAACCTTATCATCCATTTATGTGCTCACTGTTATTATAAATGGAAGATGAAGGTAAATGTATCAGAGCCGGGTTAAGGATTGCGATGTGGGAATTTGACCAAGGCCCACGCTAGACGTGAGGGTGTGGGTGTTGAAGTTGGTTTTGAGTTCGTTTGTAGTTTGTCCCACATCGTTCAGGTTCCGGGAGTCGGGTTAAGGATTGCGATGTGGGAATTGGACCCAGGCCCACGCTAGGCGTGAGCGTGGGTGTTGAAGTTGTTTGTTGTTAGTCCCACATCGCTCAGGTTCCTGTTGAGTGTATAAATATGTTTTGAGTACCCTCATCCTTTGAGCCAGCTTTTAGGATGAGATCCAAGCACATTTAACATTTAACAGGGATGATGGGCATAATATTAATTAAAGTTCATAATTGATATAATGAAACGGAGTGTGTCTATCATGGAAACATTTGCTACTTGTTTGGAAGGAGCGTGGGTGATGGGGACTATTTTTGGAGGAATTAGAAGTGGGATGTTAACTCGTTCGGGAAATCACATTAGACCGAGGGAGAATTTCCTAAACTCCGACTGTGGGAAATCAGCATTAATTCTTAAACTGAAAACACAATGTCATATGTCTCATGTTATATATAAATTCATTGAAAGTAAAATACAATCAAGTTCAAACAAAAACAAACTAAAAGAAAAAAGATTCTCTAGAAGTGGGTAGAATATTTGTGTCGAAGAAATAATGGTGGCTTGTTACTCATTTTGACCCTTGAGTTTTCGTTGAGCTAATTGAATTCATCTTTTTAATTGACGTTAACTTAACCATGTTGTCAATTACCTTCTTCCTAGAACCCTTAATATCTCATTTTTATCAAAATATCTAGTAGGATATTAAGTAAAAGTCGAAAGTTTAAAAGTACATAAAATATAAAATAATATAAAATATTTGAGAAATTTGTAGGATGTGTGATTGAAGTTTTAAAAATGGGGGAGATTTGACTTTTAAATGGAATATGATGGTTTGGCTACTTAAATTTGTGTGGAAGAAGATTTGGAACAATTTTTTTAGTTCGATTTGTGAACATTTTTAGAAGAGAATGACAATTTGAGTGTTTGAAGTAGCAAGAATGCAAAAGATAGACTTAATGGTTAAAAATAGAAATAAAAAAAAACGACGGATTAAATTTGCTCAATAAATTATTGAGGAAGCCATAGTAGAGGAAATTAGCGTGTAGTGAACCAAATAACAAATATGAGAGGGCATAAAATAGATTCAGAATAAAGGGCAGAATATAATAGGAGAGAAAGACATTAGTGATAAAAGTAAAATAAAAGAACAGAAAACTGAGAATTTCTTGTTCATTGGAAAAACGAGGTCTCTGGAATAGGGAAGTTTCTGGAGGTGGAATGTGAGGTGAGATGGGGGGTTAACTGAAAATACAATATGAAGGGCAGTTTTTGTTTGATGGCTTAGAAATTAGTGTTATATGCATTAGATTTTCACAAGTTATGTAGTGAAATAGGTTGAGCCTATTGTACTGTCTTTTCTACTTTTCGACTCATGCCAAAATCACTATGTGCACTAAGTGGAAGTGATTACCAATTTACCATGTTCTTGAAATGGTGTTGCTAGAGTTCTGATACAGTGATACTTGTCACTCTGCTTTGTAAGCCCTGTGTTGCCATTTCCCCTTTGCATGCGCAAGTGAAGGCAAATATGTGATTGTTGAAGTCTCTTGTTTTCTTTTGATGTTGCATGGTATTGAAAGAATACCTTCAAGCATAGTTGTCAAAGCGGAAACGCGGCGCGGCGCAGCCACCCCAAAAATTGACGCGGCGCGGTAAGCGGGCGCGACGCTGGCGCTTTTACATGACGCGGACACTAAAACTAAATATTATATTATTAATTAAGGACTAAAAAAGTATGAAAAAAATATATTTAGTATTAATATAGATGAGAAAATTTTATTTTGCATTCACATTTAGACTTCATCTTGATCATATTAATTCCTAGATCTCTAGATCTCTAATCAATCTTTCACTTCTTCCCTTTCTTCTTCTTCATTTTGACTGTAAAAAAAAGGATGATTAACAGAGAACAGAGATGAGATTTTGTGGTTTCTGATGAGAATTTTTTTGTTGACCCGCTTTTTGCCCGCGTTGACCCGCTTTTTGCCCGCATTGACCCGCTTTTTGCCCGTGTTGACCCGCTTTTGTTCCGCTTTTGCCTAACGCGCGACTCGGTCGCGTTCTGACGCGCTAGGCTGTTTTCAGCCGCTCCGCGCCGCGATCGCGCCGCGTTAGACCGCTATTGACAACATAGCCTTCAAGCAATGGTACAACATACCGGGCCTGGTGCTAGAATACATTTTGCATTGGACTGCATGTCATTTGTCCGGCACAGTAGCGTATCATTCTTGTGACAATTATACCTTTTTTCTTTGAAATAACCTTCATTTATCTTTTTTTGGTTACTCTTTACCTTCTACTGTGTAAAGAGGACCTATTTAAGCACTAGAAAGAAGGGTTGAGTAGATGGAGGATAGCTCAATAGTTAGAGGTAGAGAGAAGAACATCAATAGGTCAAACCACTAGGAGAGTTCTAGACATTTGGACCTAACCTATGACCTCTTGGTCTCACGACACGAATTGTAATATTTTTCTTTTTGTGAAAATAAATCAGGGAATGAGGTGATTACTATAGTGTGTTCAATGTTTATTGTGTTAAATGATGAACTCAATGAAGTGTTCACATATGCATTCAGTAAGGGATATTTCATATTTTCTGGTGGTTCCGTTCATATATGTGATTCGACCAGAAATTATATTTGATATTGAACTATAAATTCTCTCACAACAGAGAATAAACTCTGAATTCCCTATGATACTGGAAGCAAAATCTAAACAAAAATGGAATAGGTCCATGCTCTTTATAGAACTATAATAGAAATGAAAAGATAACAGAAATTGATAACCCCTAGATGAGAAGGAACCTGATTCCCTACCCCGACAGACCCTCCATTGTTTTTCATAACTTCACTGACACCTCGATTCTGTTACACCCTCTGGTATACTCGTCTCCCTCCTCACATTTCCAAATCCTCCCCAATTCCCTATGCCATCATCCTTTTTATTATGCATGTTTTCTCTCTTCCCCTTCTACAAATTCTTTTACATGAAGGCCTCGATGGCTTTCAAGCCTGTTTTTCTCTTTCACTTCCCTCACATATTCTTTTTTCCCTTTTACTCCATTGCCTTGTTAATTGGGCCTGTCAATTTTATCTTCATAGGGAAACTATGTCAAAAAGAAACATAGCAGGAAGATGAGTAGATTGATTGTGTTGTTTAAGGTATTTTGTGAGGGCATGGAGTAAAACTAGAATTAGGCATGGAGTAAAACTCGAATTAGTCATGGATTTTGTCTGATATGTGTATGCTTTAATGTTTCATCGGCTGTGAAGTATGAATGTTTCTTCATATTTTACATTAATTTGGCCTCCTCTCTTCGCTATTTCTTCACAGGGAACCATTCACACAACTCCAGGAACAAATGAAACATATTGCGTTTACAGTTCAGATGTTGCAACTGGTTATGGAGTGGGTGCTTTCCTATTTCTTCTTTCAGGTGAATCACTGCTTATGGGTGTGACAAAGTGCATGTGCTTTGGGAGGCCTTTAACCCCTGGGGGAAATCGAGCTTGGTCCATTATATATTTTCTTTCTTCTTGGTAAGAATTCTGAGTTCATTATTTTCCTAATTCTATTTCATCTGAGCACGCTGATACGGTGATATTATACTTGTTAAAACTATTGTGTTAAAAGTGACATGTTCTTATAATGTCCAGTGAAAAAAATTATTGGAAATTTCATTTTTGGCATCATCTTTTATTGATTTATTTGGTTGATTGGTTTAAGTATGTGGTGCTTTCAATATAGTCCTTCAATGTAGCAAAACAAAAAAAATTCCCAAAGTGTGTCTTACTCATTTCAGGGTTCAAACGGACTAGTAGAAGACCCATTCGAGAGCCAAACTAACGAACAAAGGACACATTAGAGAACCAAGTTGACTAACAAAGAACATATTTATGGATATTTATCGTAGTTTTAATACATTTAGTGACTATAGAGACAATGCCTCACACAATTAACGGATAAAATGAGTTTTTATTTGTTTATTTATACACAACACAACCCTTCACTCATTTTGGCTATAGATTTGGTTAGAATAACCAAATAGGAATCATTGTTTCATTCCACTATATGTGTTTTTTGTTTTTATTCACACGAAGCTTCTTGGTTTTACGAAAATGTTGCTCATGAGACATCAAATTTATTGTGATCTATGAGGTCATTCATTCTCTTCACTAGTGAATCATTTTGGTTTCAATTGCTATTTTTTTTTTTTCTTCCTTTTTTCCAGGGCTACTTTTCTGGTTGCAGAATCATGCTTAATAGCTGGTGCAAAAAAGAATGCCTATCACACCAAATACCGGGGAATTATTTATGCTCAGAACTTCTCCTGTGAAAGTTTGAGGAAAGGCATCTTCATTACCGGAGCAATTTTCATCGTTGTAACGATGGTTCTTAACGTATACTACTACATGTACTTCACAAAGGCAACCACTACTCCACTTTCTCAGAAGACCAATCGGGTTAGTTCCACGATTGGAATGACCGGACATGCATGA

Protein sequence

>MS.gene99595.t1

MAEGRGSTLVHLLVIVCCLVAFGFAVAAERRRSVGTIHTTPGTNETYCVYSSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWSIIYFLSSWATFLVAESCLIAGAKKNAYHTKYRGIIYAQNFSCESLRKGIFITGAIFIVVTMVLNVYYYMYFTKATTTPLSQKTNRVSSTIGMTGHA