Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024185.01.T01 | XP_003610782.1 | 100 | 161 | 0 | 0 | 27 | 187 | 238 | 398 | 4.04E-111 | 332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024185.01.T01 | Q9LJ87 | 90.184 | 163 | 14 | 1 | 27 | 187 | 253 | 415 | 1.25E-103 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024185.01.T01 | B7FK10 | 100.000 | 161 | 0 | 0 | 27 | 187 | 238 | 398 | 1.93e-111 | 332 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048383.01 | MsG0580024185.01 | 0.804142 | 2.489791e-49 | 1.274020e-46 |
| MsG0180000155.01 | MsG0580024185.01 | 0.816920 | 4.311789e-52 | 3.095851e-49 |
| MsG0180000205.01 | MsG0580024185.01 | 0.809916 | 1.493496e-50 | 8.880466e-48 |
| MsG0180000332.01 | MsG0580024185.01 | 0.802186 | 6.322303e-49 | 3.077037e-46 |
| MsG0180000982.01 | MsG0580024185.01 | 0.832990 | 6.896301e-56 | 7.836642e-53 |
| MsG0180001886.01 | MsG0580024185.01 | 0.816878 | 4.406879e-52 | 3.160591e-49 |
| MsG0180002794.01 | MsG0580024185.01 | 0.800257 | 1.568791e-48 | 7.271265e-46 |
| MsG0180002973.01 | MsG0580024185.01 | 0.803641 | 3.164583e-49 | 1.598569e-46 |
| MsG0180003548.01 | MsG0580024185.01 | 0.802634 | 5.110601e-49 | 2.515977e-46 |
| MsG0180003572.01 | MsG0580024185.01 | 0.813754 | 2.181029e-51 | 1.436533e-48 |
| MsG0180004050.01 | MsG0580024185.01 | 0.821536 | 3.832103e-53 | 3.126133e-50 |
| MsG0180004152.01 | MsG0580024185.01 | 0.813292 | 2.755507e-51 | 1.792318e-48 |
| MsG0180004249.01 | MsG0580024185.01 | 0.803593 | 3.237763e-49 | 1.633590e-46 |
| MsG0180004389.01 | MsG0580024185.01 | 0.821228 | 4.514292e-53 | 3.651331e-50 |
| MsG0180004481.01 | MsG0580024185.01 | 0.803120 | 4.055812e-49 | 2.021497e-46 |
| MsG0180004779.01 | MsG0580024185.01 | 0.807203 | 5.668311e-50 | 3.137967e-47 |
| MsG0180004928.01 | MsG0580024185.01 | 0.838914 | 2.166161e-57 | 2.943630e-54 |
| MsG0180005334.01 | MsG0580024185.01 | 0.812957 | 3.264286e-51 | 2.103930e-48 |
| MsG0180005575.01 | MsG0580024185.01 | 0.809993 | 1.437503e-50 | 8.565032e-48 |
| MsG0180005990.01 | MsG0580024185.01 | 0.835287 | 1.832495e-56 | 2.230943e-53 |
| MsG0180005993.01 | MsG0580024185.01 | 0.800651 | 1.304318e-48 | 6.106206e-46 |
| MsG0280010778.01 | MsG0580024185.01 | 0.803661 | 3.134262e-49 | 1.584018e-46 |
| MsG0280011156.01 | MsG0580024185.01 | 0.806929 | 6.477448e-50 | 3.560467e-47 |
| MsG0280011388.01 | MsG0580024185.01 | 0.807780 | 4.275455e-50 | 2.402669e-47 |
| MsG0380011501.01 | MsG0580024185.01 | 0.804193 | 2.429417e-49 | 1.244718e-46 |
| MsG0380011581.01 | MsG0580024185.01 | 0.801249 | 9.843711e-49 | 4.678688e-46 |
| MsG0380013183.01 | MsG0580024185.01 | 0.801069 | 1.071435e-48 | 5.069582e-46 |
| MsG0380014701.01 | MsG0580024185.01 | 0.802726 | 4.892516e-49 | 2.414372e-46 |
| MsG0480020447.01 | MsG0580024185.01 | 0.810106 | 1.359003e-50 | 8.121182e-48 |
| MsG0480020907.01 | MsG0580024185.01 | 0.811835 | 5.740013e-51 | 3.590456e-48 |
| MsG0480021195.01 | MsG0580024185.01 | 0.818551 | 1.848154e-52 | 1.387719e-49 |
| MsG0480021452.01 | MsG0580024185.01 | 0.816613 | 5.052751e-52 | 3.597423e-49 |
| MsG0480021465.01 | MsG0580024185.01 | 0.805347 | 1.394710e-49 | 7.361511e-47 |
| MsG0480021706.01 | MsG0580024185.01 | 0.801522 | 8.653315e-49 | 4.141302e-46 |
| MsG0480022207.01 | MsG0580024185.01 | 0.811392 | 7.164294e-51 | 4.429340e-48 |
| MsG0480022223.01 | MsG0580024185.01 | 0.832378 | 9.784164e-56 | 1.091620e-52 |
| MsG0480022514.01 | MsG0580024185.01 | 0.801025 | 1.093981e-48 | 5.170625e-46 |
| MsG0480022672.01 | MsG0580024185.01 | 0.811036 | 8.557263e-51 | 5.241392e-48 |
| MsG0480022696.01 | MsG0580024185.01 | 0.844026 | 9.751387e-59 | 1.554202e-55 |
| MsG0480022711.01 | MsG0580024185.01 | 0.833700 | 4.586709e-56 | 5.323372e-53 |
| MsG0480023356.01 | MsG0580024185.01 | 0.844778 | 6.122327e-59 | 9.990846e-56 |
| MsG0480023357.01 | MsG0580024185.01 | 0.831969 | 1.235097e-55 | 1.361596e-52 |
| MsG0480023994.01 | MsG0580024185.01 | 0.805520 | 1.283247e-49 | 6.803042e-47 |
| MsG0580024185.01 | MsG0580024188.01 | 0.953923 | 9.374423e-112 | 2.549196e-106 |
| MsG0580024185.01 | MsG0580024197.01 | 0.842587 | 2.361178e-58 | 3.596766e-55 |
| MsG0580024185.01 | MsG0580024339.01 | 0.834108 | 3.626260e-56 | 4.260926e-53 |
| MsG0580024185.01 | MsG0580024619.01 | 0.807057 | 6.085655e-50 | 3.356217e-47 |
| MsG0580024185.01 | MsG0580024727.01 | 0.829370 | 5.347017e-55 | 5.462206e-52 |
| MsG0580024185.01 | MsG0580024981.01 | 0.824971 | 6.044274e-54 | 5.436830e-51 |
| MsG0580024185.01 | MsG0580025268.01 | 0.826879 | 2.129126e-54 | 2.022133e-51 |
| MsG0580024185.01 | MsG0580025587.01 | 0.817395 | 3.371983e-52 | 2.452807e-49 |
| MsG0580024185.01 | MsG0580025756.01 | 0.816748 | 4.713270e-52 | 3.368131e-49 |
| MsG0580024185.01 | MsG0580026485.01 | 0.812038 | 5.182933e-51 | 3.259741e-48 |
| MsG0580024185.01 | MsG0580026718.01 | 0.813314 | 2.724923e-51 | 1.773504e-48 |
| MsG0580024185.01 | MsG0580027320.01 | 0.825532 | 4.452112e-54 | 4.068890e-51 |
| MsG0580024185.01 | MsG0580027925.01 | 0.842750 | 2.137186e-58 | 3.271821e-55 |
| MsG0580024185.01 | MsG0580029236.01 | 0.821284 | 4.380664e-53 | 3.548618e-50 |
| MsG0580024185.01 | MsG0580029924.01 | 0.802010 | 6.872042e-49 | 3.329706e-46 |
| MsG0580024185.01 | MsG0680030350.01 | 0.807342 | 5.296835e-50 | 2.942899e-47 |
| MsG0580024185.01 | MsG0680030413.01 | 0.802493 | 5.464994e-49 | 2.680707e-46 |
| MsG0580024185.01 | MsG0680031507.01 | 0.818670 | 1.736792e-52 | 1.308369e-49 |
| MsG0580024185.01 | MsG0680031646.01 | 0.800554 | 1.365065e-48 | 6.374797e-46 |
| MsG0580024185.01 | MsG0680031708.01 | 0.800647 | 1.306840e-48 | 6.117310e-46 |
| MsG0580024185.01 | MsG0680035475.01 | 0.800042 | 1.734766e-48 | 7.996697e-46 |
| MsG0580024185.01 | MsG0680035876.01 | 0.821162 | 4.674617e-53 | 3.774048e-50 |
| MsG0580024185.01 | MsG0680035888.01 | 0.825175 | 5.410151e-54 | 4.894789e-51 |
| MsG0580024185.01 | MsG0780036136.01 | 0.802069 | 6.681962e-49 | 3.242568e-46 |
| MsG0580024185.01 | MsG0780036340.01 | 0.820253 | 7.563505e-53 | 5.953991e-50 |
| MsG0580024185.01 | MsG0780037124.01 | 0.813885 | 2.041062e-51 | 1.349140e-48 |
| MsG0580024185.01 | MsG0780037141.01 | 0.833888 | 4.116711e-56 | 4.805669e-53 |
| MsG0580024185.01 | MsG0780038603.01 | 0.826316 | 2.900741e-54 | 2.710929e-51 |
| MsG0580024185.01 | MsG0780039170.01 | 0.816250 | 6.091471e-52 | 4.294333e-49 |
| MsG0580024185.01 | MsG0780040162.01 | 0.847708 | 9.748533e-60 | 1.747780e-56 |
| MsG0580024185.01 | MsG0780040545.01 | 0.814246 | 1.698340e-51 | 1.133683e-48 |
| MsG0580024185.01 | MsG0780040888.01 | 0.801243 | 9.872965e-49 | 4.691916e-46 |
| MsG0580024185.01 | MsG0780041392.01 | 0.823322 | 1.474217e-53 | 1.265138e-50 |
| MsG0580024185.01 | MsG0880042518.01 | 0.813041 | 3.128160e-51 | 2.020873e-48 |
| MsG0580024185.01 | MsG0880044975.01 | 0.821596 | 3.711427e-53 | 3.032696e-50 |
| MsG0580024185.01 | MsG0880045145.01 | 0.803972 | 2.700431e-49 | 1.375832e-46 |
| MsG0580024185.01 | MsG0880045965.01 | 0.831918 | 1.271181e-55 | 1.399368e-52 |
| MsG0580024185.01 | MsG0880047212.01 | 0.811239 | 7.734905e-51 | 4.762772e-48 |
| MsG0580024185.01 | MsG0880047764.01 | 0.838258 | 3.199686e-57 | 4.261773e-54 |
| MsG0380015300.01 | MsG0580024185.01 | 0.818296 | 2.111226e-52 | 1.574097e-49 |
| MsG0380015332.01 | MsG0580024185.01 | 0.803385 | 3.575397e-49 | 1.794224e-46 |
| MsG0380015555.01 | MsG0580024185.01 | 0.802238 | 6.169487e-49 | 3.006710e-46 |
| MsG0380016005.01 | MsG0580024185.01 | 0.804915 | 1.717679e-49 | 8.966880e-47 |
| MsG0380016067.01 | MsG0580024185.01 | 0.800032 | 1.742965e-48 | 8.032472e-46 |
| MsG0380016133.01 | MsG0580024185.01 | 0.819138 | 1.359169e-52 | 1.037182e-49 |
| MsG0380016714.01 | MsG0580024185.01 | 0.802802 | 4.719895e-49 | 2.333634e-46 |
| MsG0380016860.01 | MsG0580024185.01 | 0.830444 | 2.926237e-55 | 3.083435e-52 |
| MsG0380016970.01 | MsG0580024185.01 | 0.833821 | 4.278905e-56 | 4.984941e-53 |
| MsG0380018033.01 | MsG0580024185.01 | 0.820651 | 6.127221e-53 | 4.876495e-50 |
| MsG0380018044.01 | MsG0580024185.01 | 0.805668 | 1.194331e-49 | 6.356223e-47 |
| MsG0280006593.01 | MsG0580024185.01 | 0.815092 | 1.103773e-51 | 7.537687e-49 |
| MsG0280006930.01 | MsG0580024185.01 | 0.834568 | 2.780424e-56 | 3.312698e-53 |
| MsG0280007101.01 | MsG0580024185.01 | 0.802710 | 4.930732e-49 | 2.432148e-46 |
| MsG0280007153.01 | MsG0580024185.01 | 0.801845 | 7.429763e-49 | 3.585000e-46 |
| MsG0280007506.01 | MsG0580024185.01 | 0.809146 | 2.185218e-50 | 1.273092e-47 |
| MsG0280007955.01 | MsG0580024185.01 | 0.833708 | 4.566034e-56 | 5.300653e-53 |
| MsG0280008112.01 | MsG0580024185.01 | 0.810404 | 1.172374e-50 | 7.060189e-48 |
| MsG0280008457.01 | MsG0580024185.01 | 0.828051 | 1.114209e-54 | 1.095089e-51 |
| MsG0280008738.01 | MsG0580024185.01 | 0.805609 | 1.228993e-49 | 6.530565e-47 |
| MsG0280010233.01 | MsG0580024185.01 | 0.807649 | 4.558381e-50 | 2.552842e-47 |
| MsG0280010434.01 | MsG0580024185.01 | 0.837611 | 4.694197e-57 | 6.130348e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024185.01.T01 | MTR_5g006960 | 100.000 | 161 | 0 | 0 | 27 | 187 | 238 | 398 | 4.89e-115 | 332 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024185.01.T01 | AT3G22590 | 90.184 | 163 | 14 | 1 | 27 | 187 | 253 | 415 | 1.28e-104 | 306 |
Find 53 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTAGTATATTGTTAAATT+AGG | 0.131153 | 5:-1711084 | MsG0580024185.01.T01:three_prime_UTR |
| TATCCGAATATTGCAATATT+TGG | 0.151297 | 5:-1711161 | MsG0580024185.01.T01:three_prime_UTR |
| CAATATACTACATTGTTAAA+AGG | 0.224048 | 5:+1711094 | None:intergenic |
| GCGAAGGTTTCCGATTATTT+TGG | 0.248133 | 5:-1711909 | MsG0580024185.01.T01:CDS |
| CTGTTACTGCTTATGAAGTT+AGG | 0.278775 | 5:-1711733 | MsG0580024185.01.T01:CDS |
| ATGGGAAGTGCTGATGATTT+TGG | 0.292521 | 5:-1711990 | MsG0580024188.01.T01:intron |
| ATCTCGACATGATCCTTAAA+AGG | 0.296624 | 5:+1711623 | None:intergenic |
| TGTAGTATATTGTTAAATTA+GGG | 0.298869 | 5:-1711083 | MsG0580024185.01.T01:three_prime_UTR |
| GCATGAAAATTAATCTTAGA+TGG | 0.367738 | 5:+1710925 | None:intergenic |
| TTATGTACCTACTGATGTTA+AGG | 0.369770 | 5:-1711822 | MsG0580024185.01.T01:CDS |
| TATTACTATCTATAATGTTA+AGG | 0.376267 | 5:-1711864 | MsG0580024185.01.T01:CDS |
| CTGTTCAGAAGAAGCTTAGT+AGG | 0.378789 | 5:-1711763 | MsG0580024185.01.T01:CDS |
| ACACCAAATATTGCAATATT+CGG | 0.379609 | 5:+1711158 | None:intergenic |
| TCAAGACAGGGCTGCGGCAT+TGG | 0.380453 | 5:-1711291 | MsG0580024185.01.T01:CDS |
| TACAGTGATCGCTAAAAGTA+TGG | 0.393026 | 5:+1711209 | None:intergenic |
| TGCGCTTAAACCTGAGGATT+GGG | 0.400010 | 5:-1711699 | MsG0580024185.01.T01:CDS |
| ACCTAAAATGCATCTTAAAT+CGG | 0.412984 | 5:-1711931 | MsG0580024185.01.T01:CDS |
| ATATGCTATTTCACCGTGTA+AGG | 0.419044 | 5:-1711021 | MsG0580024185.01.T01:three_prime_UTR |
| GCACTCGGAACCAAAATAAT+CGG | 0.435108 | 5:+1711899 | None:intergenic |
| GGGAAAGGATTGGCAGTTCA+AGG | 0.438397 | 5:-1711651 | MsG0580024185.01.T01:CDS |
| GGCTGCGGCATTGGAGGTGT+GGG | 0.440734 | 5:-1711282 | MsG0580024185.01.T01:CDS |
| GGTGTCTTGTAATGTTATAT+CGG | 0.449460 | 5:-1711140 | MsG0580024185.01.T01:three_prime_UTR |
| GGGCTGCGGCATTGGAGGTG+TGG | 0.449671 | 5:-1711283 | MsG0580024185.01.T01:CDS |
| TGTTACTGCTTATGAAGTTA+GGG | 0.450144 | 5:-1711732 | MsG0580024185.01.T01:CDS |
| CTGCGCTTAAACCTGAGGAT+TGG | 0.455759 | 5:-1711700 | MsG0580024185.01.T01:CDS |
| ACCTACTGATGTTAAGGTTA+AGG | 0.458526 | 5:-1711816 | MsG0580024185.01.T01:CDS |
| AGAACAAGCGGCATCAAGAC+AGG | 0.461687 | 5:-1711304 | MsG0580024185.01.T01:CDS |
| TTCTGAACAGTAACACAATC+CGG | 0.474450 | 5:+1711776 | None:intergenic |
| GGCGATGAAAGGTGCTAAGC+CGG | 0.488489 | 5:-1711795 | MsG0580024185.01.T01:CDS |
| AGACAGGGCTGCGGCATTGG+AGG | 0.490687 | 5:-1711288 | MsG0580024185.01.T01:CDS |
| ATTGGAGGTGTGGGACAGAC+TGG | 0.497768 | 5:-1711273 | MsG0580024185.01.T01:CDS |
| ATCCATCTTTAGCACACAAA+AGG | 0.498482 | 5:+1711042 | None:intergenic |
| AGGATTGGCAGTTCAAGGAT+TGG | 0.523053 | 5:-1711646 | MsG0580024185.01.T01:CDS |
| TCCTCAGGTTTAAGCGCAGA+AGG | 0.543271 | 5:+1711704 | None:intergenic |
| TATTGCAATATTCGGATACA+AGG | 0.546360 | 5:+1711166 | None:intergenic |
| TGTTCAGAAGAAGCTTAGTA+GGG | 0.562083 | 5:-1711762 | MsG0580024185.01.T01:CDS |
| CTATTTCACCGTGTAAGGGA+TGG | 0.566604 | 5:-1711016 | MsG0580024185.01.T01:three_prime_UTR |
| GCCTTCTGCGCTTAAACCTG+AGG | 0.566756 | 5:-1711705 | MsG0580024185.01.T01:CDS |
| ACAACACGATCCCAATCCTC+AGG | 0.568851 | 5:+1711689 | None:intergenic |
| CACAAAAGGATATTAGTGAC+AGG | 0.571107 | 5:+1711056 | None:intergenic |
| AATGCATCTTAAATCGGCGA+AGG | 0.577375 | 5:-1711925 | MsG0580024185.01.T01:CDS |
| TATACTACATTGTTAAAAGG+TGG | 0.584796 | 5:+1711097 | None:intergenic |
| GCGGCATCAAGACAGGGCTG+CGG | 0.587480 | 5:-1711297 | MsG0580024185.01.T01:CDS |
| GTTAAGGTTAAGGCGATGAA+AGG | 0.589838 | 5:-1711806 | MsG0580024185.01.T01:CDS |
| TTCAGATTAGTAAGAACAAG+CGG | 0.592064 | 5:-1711316 | MsG0580024185.01.T01:intron |
| CTGCGAAGACTGTGAAGCAG+TGG | 0.602270 | 5:-1711446 | MsG0580024185.01.T01:CDS |
| TATGCTATTTCACCGTGTAA+GGG | 0.618252 | 5:-1711020 | MsG0580024185.01.T01:three_prime_UTR |
| GTGGAATGTGAAGATTATCT+CGG | 0.629342 | 5:-1711427 | MsG0580024185.01.T01:intron |
| GCCTTAACCTTAACATCAGT+AGG | 0.634280 | 5:+1711815 | None:intergenic |
| ATAAGTGTCTGAAAAGCACT+CGG | 0.638006 | 5:+1711884 | None:intergenic |
| GAACAAGCGGCATCAAGACA+GGG | 0.639576 | 5:-1711303 | MsG0580024185.01.T01:CDS |
| AGTGATCGCTAAAAGTATGG+TGG | 0.690555 | 5:+1711212 | None:intergenic |
| GGATTGGGATCGTGTTGTCG+CGG | 0.703493 | 5:-1711684 | MsG0580024185.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAACAATCAAAATAAAA+TGG | + | Chr5:1711316-1711335 | None:intergenic | 10.0% |
| !! | ATGTAGTATATTGTTAAATT+AGG | - | Chr5:1711804-1711823 | MsG0580024185.01.T01:CDS | 15.0% |
| !! | TATTACTATCTATAATGTTA+AGG | - | Chr5:1711024-1711043 | MsG0580024185.01.T01:three_prime_UTR | 15.0% |
| !! | TGTAGTATATTGTTAAATTA+GGG | - | Chr5:1711805-1711824 | MsG0580024185.01.T01:CDS | 15.0% |
| !! | CAATATACTACATTGTTAAA+AGG | + | Chr5:1711797-1711816 | None:intergenic | 20.0% |
| !!! | CTATAATGTTAAGGATTTTT+TGG | - | Chr5:1711033-1711052 | MsG0580024185.01.T01:three_prime_UTR | 20.0% |
| ! | ACACCAAATATTGCAATATT+CGG | + | Chr5:1711733-1711752 | None:intergenic | 25.0% |
| ! | ACCTAAAATGCATCTTAAAT+CGG | - | Chr5:1710957-1710976 | MsG0580024185.01.T01:three_prime_UTR | 25.0% |
| ! | GCATGAAAATTAATCTTAGA+TGG | + | Chr5:1711966-1711985 | None:intergenic | 25.0% |
| ! | TATACTACATTGTTAAAAGG+TGG | + | Chr5:1711794-1711813 | None:intergenic | 25.0% |
| ! | TATCCGAATATTGCAATATT+TGG | - | Chr5:1711727-1711746 | MsG0580024185.01.T01:CDS | 25.0% |
| !! | GATTAATTTTCATGCACATT+TGG | - | Chr5:1711971-1711990 | MsG0580024185.01.T01:CDS | 25.0% |
| !! | TCGAGATTTTCAATAAAAGT+CGG | - | Chr5:1711281-1711300 | MsG0580024185.01.T01:CDS | 25.0% |
| !!! | TTAAGATGCATTTTAGGTTT+CGG | + | Chr5:1710955-1710974 | None:intergenic | 25.0% |
| !!! | TTAAGGATTTTTTGGAAGAT+GGG | - | Chr5:1711041-1711060 | MsG0580024185.01.T01:three_prime_UTR | 25.0% |
| GGTGTCTTGTAATGTTATAT+CGG | - | Chr5:1711748-1711767 | MsG0580024185.01.T01:CDS | 30.0% | |
| TATTGCAATATTCGGATACA+AGG | + | Chr5:1711725-1711744 | None:intergenic | 30.0% | |
| TGTTACTGCTTATGAAGTTA+GGG | - | Chr5:1711156-1711175 | MsG0580024185.01.T01:three_prime_UTR | 30.0% | |
| TTATGTACCTACTGATGTTA+AGG | - | Chr5:1711066-1711085 | MsG0580024185.01.T01:three_prime_UTR | 30.0% | |
| TTCAGATTAGTAAGAACAAG+CGG | - | Chr5:1711572-1711591 | MsG0580024185.01.T01:intron | 30.0% | |
| !!! | CAGTTACTGGATTTTTTATG+CGG | - | Chr5:1711397-1711416 | MsG0580024185.01.T01:intron | 30.0% |
| !!! | GTTAAGGATTTTTTGGAAGA+TGG | - | Chr5:1711040-1711059 | MsG0580024185.01.T01:three_prime_UTR | 30.0% |
| !!! | TAAGGATTTTTTGGAAGATG+GGG | - | Chr5:1711042-1711061 | MsG0580024185.01.T01:three_prime_UTR | 30.0% |
| !!! | TTTTTGTTTTGGGAAAGGAT+TGG | - | Chr5:1711227-1711246 | MsG0580024185.01.T01:exon | 30.0% |
| AAAAACTTCCATCCCTTACA+CGG | + | Chr5:1711883-1711902 | None:intergenic | 35.0% | |
| ACCTACTGATGTTAAGGTTA+AGG | - | Chr5:1711072-1711091 | MsG0580024185.01.T01:three_prime_UTR | 35.0% | |
| AGTAACTGCAACAATTTGAC+AGG | + | Chr5:1711385-1711404 | None:intergenic | 35.0% | |
| ATCCATCTTTAGCACACAAA+AGG | + | Chr5:1711849-1711868 | None:intergenic | 35.0% | |
| ATCTCGACATGATCCTTAAA+AGG | + | Chr5:1711268-1711287 | None:intergenic | 35.0% | |
| CACAAAAGGATATTAGTGAC+AGG | + | Chr5:1711835-1711854 | None:intergenic | 35.0% | |
| CTGTTACTGCTTATGAAGTT+AGG | - | Chr5:1711155-1711174 | MsG0580024185.01.T01:three_prime_UTR | 35.0% | |
| GTAACTGCAACAATTTGACA+GGG | + | Chr5:1711384-1711403 | None:intergenic | 35.0% | |
| GTGCAGTGTAAGTTAAAAAC+TGG | + | Chr5:1711535-1711554 | None:intergenic | 35.0% | |
| GTGGAATGTGAAGATTATCT+CGG | - | Chr5:1711461-1711480 | MsG0580024185.01.T01:CDS | 35.0% | |
| TAACTGCAACAATTTGACAG+GGG | + | Chr5:1711383-1711402 | None:intergenic | 35.0% | |
| TACAGTGATCGCTAAAAGTA+TGG | + | Chr5:1711682-1711701 | None:intergenic | 35.0% | |
| TGTCAAATTGTTGCAGTTAC+TGG | - | Chr5:1711384-1711403 | MsG0580024185.01.T01:intron | 35.0% | |
| TGTTCAGAAGAAGCTTAGTA+GGG | - | Chr5:1711126-1711145 | MsG0580024185.01.T01:three_prime_UTR | 35.0% | |
| TTCTGAACAGTAACACAATC+CGG | + | Chr5:1711115-1711134 | None:intergenic | 35.0% | |
| ! | ATCCTTTTGTGTGCTAAAGA+TGG | - | Chr5:1711844-1711863 | MsG0580024185.01.T01:CDS | 35.0% |
| !! | ATAAGTGTCTGAAAAGCACT+CGG | + | Chr5:1711007-1711026 | None:intergenic | 35.0% |
| !! | ATATGCTATTTCACCGTGTA+AGG | - | Chr5:1711867-1711886 | MsG0580024185.01.T01:CDS | 35.0% |
| !! | GCCGATTTAAGATGCATTTT+AGG | + | Chr5:1710961-1710980 | None:intergenic | 35.0% |
| !! | TATGCTATTTCACCGTGTAA+GGG | - | Chr5:1711868-1711887 | MsG0580024185.01.T01:CDS | 35.0% |
| !!! | ATTTTGGTGGTGATGAAATG+GGG | - | Chr5:1710914-1710933 | MsG0580024185.01.T01:three_prime_UTR | 35.0% |
| !!! | GATTTTGGTGGTGATGAAAT+GGG | - | Chr5:1710913-1710932 | MsG0580024185.01.T01:three_prime_UTR | 35.0% |
| !!! | TGATTTTGGTGGTGATGAAA+TGG | - | Chr5:1710912-1710931 | MsG0580024185.01.T01:three_prime_UTR | 35.0% |
| AATGCATCTTAAATCGGCGA+AGG | - | Chr5:1710963-1710982 | MsG0580024185.01.T01:three_prime_UTR | 40.0% | |
| CTGTTCAGAAGAAGCTTAGT+AGG | - | Chr5:1711125-1711144 | MsG0580024185.01.T01:three_prime_UTR | 40.0% | |
| GCACTCGGAACCAAAATAAT+CGG | + | Chr5:1710992-1711011 | None:intergenic | 40.0% | |
| GCATAGCAGTAGTTAGAACA+AGG | + | Chr5:1711497-1711516 | None:intergenic | 40.0% | |
| GCCTTAACCTTAACATCAGT+AGG | + | Chr5:1711076-1711095 | None:intergenic | 40.0% | |
| GTTAAGGTTAAGGCGATGAA+AGG | - | Chr5:1711082-1711101 | MsG0580024185.01.T01:three_prime_UTR | 40.0% | |
| ! | AGTGATCGCTAAAAGTATGG+TGG | + | Chr5:1711679-1711698 | None:intergenic | 40.0% |
| ! | GCGAAGGTTTCCGATTATTT+TGG | - | Chr5:1710979-1710998 | MsG0580024185.01.T01:three_prime_UTR | 40.0% |
| !! | TGTTGTCGCGGTTTTTGTTT+TGG | - | Chr5:1711216-1711235 | MsG0580024185.01.T01:three_prime_UTR | 40.0% |
| !!! | GTTCAAGGATTGGCCTTTTA+AGG | - | Chr5:1711252-1711271 | MsG0580024185.01.T01:CDS | 40.0% |
| !!! | GTTGTCGCGGTTTTTGTTTT+GGG | - | Chr5:1711217-1711236 | MsG0580024185.01.T01:three_prime_UTR | 40.0% |
| CTATTTCACCGTGTAAGGGA+TGG | - | Chr5:1711872-1711891 | MsG0580024185.01.T01:CDS | 45.0% | |
| TGCGCTTAAACCTGAGGATT+GGG | - | Chr5:1711189-1711208 | MsG0580024185.01.T01:three_prime_UTR | 45.0% | |
| ! | AGGATTGGCAGTTCAAGGAT+TGG | - | Chr5:1711242-1711261 | MsG0580024185.01.T01:CDS | 45.0% |
| !!! | CGCGGTTTTTGTTTTGGGAA+AGG | - | Chr5:1711222-1711241 | MsG0580024185.01.T01:exon | 45.0% |
| ACAACACGATCCCAATCCTC+AGG | + | Chr5:1711202-1711221 | None:intergenic | 50.0% | |
| AGAACAAGCGGCATCAAGAC+AGG | - | Chr5:1711584-1711603 | MsG0580024185.01.T01:intron | 50.0% | |
| CTGCGCTTAAACCTGAGGAT+TGG | - | Chr5:1711188-1711207 | MsG0580024185.01.T01:three_prime_UTR | 50.0% | |
| GAACAAGCGGCATCAAGACA+GGG | - | Chr5:1711585-1711604 | MsG0580024185.01.T01:intron | 50.0% | |
| TCCTCAGGTTTAAGCGCAGA+AGG | + | Chr5:1711187-1711206 | None:intergenic | 50.0% | |
| ! | GGGAAAGGATTGGCAGTTCA+AGG | - | Chr5:1711237-1711256 | MsG0580024185.01.T01:exon | 50.0% |
| CTGCGAAGACTGTGAAGCAG+TGG | - | Chr5:1711442-1711461 | MsG0580024185.01.T01:CDS | 55.0% | |
| GCCTTCTGCGCTTAAACCTG+AGG | - | Chr5:1711183-1711202 | MsG0580024185.01.T01:three_prime_UTR | 55.0% | |
| GGATTGGGATCGTGTTGTCG+CGG | - | Chr5:1711204-1711223 | MsG0580024185.01.T01:three_prime_UTR | 55.0% | |
| ! | ATTGGAGGTGTGGGACAGAC+TGG | - | Chr5:1711615-1711634 | MsG0580024185.01.T01:CDS | 55.0% |
| !! | GGCGATGAAAGGTGCTAAGC+CGG | - | Chr5:1711093-1711112 | MsG0580024185.01.T01:three_prime_UTR | 55.0% |
| TCAAGACAGGGCTGCGGCAT+TGG | - | Chr5:1711597-1711616 | MsG0580024185.01.T01:intron | 60.0% | |
| GCGGCATCAAGACAGGGCTG+CGG | - | Chr5:1711591-1711610 | MsG0580024185.01.T01:intron | 65.0% | |
| ! | AGACAGGGCTGCGGCATTGG+AGG | - | Chr5:1711600-1711619 | MsG0580024185.01.T01:intron | 65.0% |
| ! | GGCTGCGGCATTGGAGGTGT+GGG | - | Chr5:1711606-1711625 | MsG0580024185.01.T01:intron | 65.0% |
| ! | GGGCTGCGGCATTGGAGGTG+TGG | - | Chr5:1711605-1711624 | MsG0580024185.01.T01:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 1710911 | 1711999 | 1710911 | ID=MsG0580024185.01;Name=MsG0580024185.01 |
| Chr5 | mRNA | 1710911 | 1711999 | 1710911 | ID=MsG0580024185.01.T01;Parent=MsG0580024185.01;Name=MsG0580024185.01.T01;_AED=0.29;_eAED=0.29;_QI=0|1|1|1|1|1|3|330|187 |
| Chr5 | exon | 1710911 | 1711333 | 1710911 | ID=MsG0580024185.01.T01:exon:490;Parent=MsG0580024185.01.T01 |
| Chr5 | exon | 1711428 | 1711510 | 1711428 | ID=MsG0580024185.01.T01:exon:489;Parent=MsG0580024185.01.T01 |
| Chr5 | exon | 1711612 | 1711999 | 1711612 | ID=MsG0580024185.01.T01:exon:488;Parent=MsG0580024185.01.T01 |
| Chr5 | CDS | 1711612 | 1711999 | 1711612 | ID=MsG0580024185.01.T01:cds;Parent=MsG0580024185.01.T01 |
| Chr5 | CDS | 1711428 | 1711510 | 1711428 | ID=MsG0580024185.01.T01:cds;Parent=MsG0580024185.01.T01 |
| Chr5 | CDS | 1711241 | 1711333 | 1711241 | ID=MsG0580024185.01.T01:cds;Parent=MsG0580024185.01.T01 |
| Chr5 | three_prime_UTR | 1710911 | 1711240 | 1710911 | ID=MsG0580024185.01.T01:three_prime_utr;Parent=MsG0580024185.01.T01 |
| Gene Sequence |
| Protein sequence |
