Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003238.01.T01 | XP_003590316.1 | 98.333 | 240 | 4 | 0 | 1 | 240 | 1 | 240 | 8.58E-173 | 485 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003238.01.T01 | B7FHS4 | 98.333 | 240 | 4 | 0 | 1 | 240 | 1 | 240 | 4.10e-173 | 485 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048889.01 | MsG0180003238.01 | 0.834043 | 3.765852e-56 | 4.416241e-53 |
| MsG0080049008.01 | MsG0180003238.01 | 0.852150 | 5.575867e-61 | 1.154479e-57 |
| MsG0180000583.01 | MsG0180003238.01 | 0.806943 | 6.435101e-50 | 3.538358e-47 |
| MsG0180001147.01 | MsG0180003238.01 | -0.807040 | 6.138169e-50 | 3.383650e-47 |
| MsG0180003238.01 | MsG0180003484.01 | 0.807770 | 4.297930e-50 | 2.414605e-47 |
| MsG0180003238.01 | MsG0180004064.01 | 0.819352 | 1.214823e-52 | 9.325303e-50 |
| MsG0180003238.01 | MsG0180005028.01 | 0.826662 | 2.398563e-54 | 2.263861e-51 |
| MsG0180003238.01 | MsG0180005819.01 | 0.803347 | 3.640418e-49 | 1.825048e-46 |
| MsG0180003238.01 | MsG0180005984.01 | 0.829323 | 5.489829e-55 | 5.600723e-52 |
| MsG0180003238.01 | MsG0180006116.01 | 0.808722 | 2.692774e-50 | 1.551039e-47 |
| MsG0180003238.01 | MsG0280007426.01 | 0.811577 | 6.531340e-51 | 4.057716e-48 |
| MsG0180003238.01 | MsG0280007427.01 | 0.802885 | 4.537491e-49 | 2.248117e-46 |
| MsG0180003238.01 | MsG0280007505.01 | 0.802332 | 5.899329e-49 | 2.882100e-46 |
| MsG0180003238.01 | MsG0280009526.01 | 0.807541 | 4.806251e-50 | 2.684122e-47 |
| MsG0180003238.01 | MsG0280010617.01 | 0.804922 | 1.711914e-49 | 8.938376e-47 |
| MsG0180003238.01 | MsG0280010854.01 | -0.807950 | 3.933933e-50 | 2.220599e-47 |
| MsG0180003238.01 | MsG0280011106.01 | 0.814779 | 1.294672e-51 | 8.767228e-49 |
| MsG0180003238.01 | MsG0280011269.01 | 0.810997 | 8.726752e-51 | 5.340038e-48 |
| MsG0180003238.01 | MsG0380012368.01 | 0.801148 | 1.032222e-48 | 4.893724e-46 |
| MsG0180003238.01 | MsG0380013063.01 | -0.804733 | 1.875173e-49 | 9.742972e-47 |
| MsG0180003238.01 | MsG0380015402.01 | 0.806111 | 9.640939e-50 | 5.189375e-47 |
| MsG0180003238.01 | MsG0380016031.01 | 0.800258 | 1.568338e-48 | 7.269258e-46 |
| MsG0180003238.01 | MsG0380016393.01 | 0.800386 | 1.476823e-48 | 6.867503e-46 |
| MsG0180003238.01 | MsG0380016485.01 | 0.809427 | 1.902234e-50 | 1.116566e-47 |
| MsG0180003238.01 | MsG0380016717.01 | 0.822668 | 2.093871e-53 | 1.764145e-50 |
| MsG0180003238.01 | MsG0380017594.01 | 0.823427 | 1.393582e-53 | 1.199455e-50 |
| MsG0180003238.01 | MsG0380017695.01 | 0.801546 | 8.556126e-49 | 4.097164e-46 |
| MsG0180003238.01 | MsG0480021175.01 | 0.841977 | 3.424501e-58 | 5.117368e-55 |
| MsG0180003238.01 | MsG0480021224.01 | 0.821581 | 3.742785e-53 | 3.057040e-50 |
| MsG0180003238.01 | MsG0480021226.01 | 0.828413 | 9.116621e-55 | 9.055316e-52 |
| MsG0180003238.01 | MsG0480023125.01 | 0.803013 | 4.268424e-49 | 2.121593e-46 |
| MsG0180003238.01 | MsG0480023179.01 | 0.805759 | 1.143096e-49 | 6.098050e-47 |
| MsG0180003238.01 | MsG0480023626.01 | 0.813469 | 2.519227e-51 | 1.646633e-48 |
| MsG0180003238.01 | MsG0480023663.01 | 0.836194 | 1.079223e-56 | 1.350397e-53 |
| MsG0180003238.01 | MsG0580025620.01 | 0.812282 | 4.586123e-51 | 2.903824e-48 |
| MsG0180003238.01 | MsG0580025746.01 | 0.803668 | 3.122965e-49 | 1.578620e-46 |
| MsG0180003238.01 | MsG0580029696.01 | 0.804089 | 2.553865e-49 | 1.305037e-46 |
| MsG0180003238.01 | MsG0680034139.01 | 0.812845 | 3.454200e-51 | 2.219731e-48 |
| MsG0180003238.01 | MsG0680034760.01 | 0.805136 | 1.544512e-49 | 8.108178e-47 |
| MsG0180003238.01 | MsG0780038305.01 | 0.828258 | 9.934049e-55 | 9.822028e-52 |
| MsG0180003238.01 | MsG0780038321.01 | 0.829723 | 4.389108e-55 | 4.529962e-52 |
| MsG0180003238.01 | MsG0780039234.01 | 0.847688 | 9.873829e-60 | 1.769232e-56 |
| MsG0180003238.01 | MsG0780040276.01 | 0.818840 | 1.589072e-52 | 1.202796e-49 |
| MsG0180003238.01 | MsG0780040978.01 | 0.817706 | 2.869730e-52 | 2.105278e-49 |
| MsG0180003238.01 | MsG0780040990.01 | 0.807090 | 5.989294e-50 | 3.305820e-47 |
| MsG0180003238.01 | MsG0780041397.01 | 0.802725 | 4.896165e-49 | 2.416077e-46 |
| MsG0180003238.01 | MsG0780041403.01 | 0.832810 | 7.644994e-56 | 8.639737e-53 |
| MsG0180003238.01 | MsG0780041436.01 | 0.805212 | 1.488696e-49 | 7.830364e-47 |
| MsG0180003238.01 | MsG0780041591.01 | 0.856146 | 3.918287e-62 | 9.261223e-59 |
| MsG0180003238.01 | MsG0880042122.01 | 0.811913 | 5.517816e-51 | 3.458648e-48 |
| MsG0180003238.01 | MsG0880043472.01 | 0.807376 | 5.209629e-50 | 2.897000e-47 |
| MsG0180003238.01 | MsG0880043669.01 | 0.803313 | 3.699936e-49 | 1.853277e-46 |
| MsG0180003238.01 | MsG0880044356.01 | 0.823214 | 1.562630e-53 | 1.336953e-50 |
| MsG0180003238.01 | MsG0880044688.01 | 0.804221 | 2.396893e-49 | 1.228922e-46 |
| MsG0180003238.01 | MsG0880045482.01 | 0.802563 | 5.287468e-49 | 2.598231e-46 |
| MsG0180003238.01 | MsG0880045909.01 | 0.800741 | 1.249840e-48 | 5.864548e-46 |
| MsG0180003238.01 | MsG0880046010.01 | -0.806584 | 7.662881e-50 | 4.174643e-47 |
| MsG0180003238.01 | MsG0880046174.01 | -0.848325 | 6.587057e-60 | 1.204386e-56 |
| MsG0180003238.01 | MsG0880047090.01 | 0.805330 | 1.406625e-49 | 7.421049e-47 |
| MsG0180003238.01 | MsG0880047331.01 | 0.802225 | 6.206419e-49 | 3.023682e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003238.01.T01 | MTR_1g056390 | 98.333 | 240 | 4 | 0 | 1 | 240 | 1 | 240 | 1.04e-176 | 485 |
| MsG0180003238.01.T01 | MTR_4g068290 | 60.000 | 230 | 82 | 6 | 3 | 232 | 20 | 239 | 1.48e-91 | 270 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003238.01.T01 | AT3G44150 | 67.089 | 237 | 72 | 3 | 5 | 240 | 15 | 246 | 2.66e-116 | 332 |
| MsG0180003238.01.T01 | AT3G11800 | 61.411 | 241 | 86 | 4 | 7 | 240 | 6 | 246 | 1.97e-101 | 295 |
| MsG0180003238.01.T01 | AT2G15910 | 55.556 | 225 | 85 | 4 | 21 | 233 | 142 | 363 | 1.16e-83 | 254 |
| MsG0180003238.01.T01 | AT3G48630 | 52.381 | 63 | 30 | 0 | 107 | 169 | 2 | 64 | 1.53e-15 | 71.2 |
Find 66 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGGACTAATTACACTAAT+TGG | 0.260828 | 1:-58835236 | None:intergenic |
| GGCTATATGGTTGCATTTGC+TGG | 0.262227 | 1:+58834469 | MsG0180003238.01.T01:CDS |
| ACAAATACATTTAGAATAGA+AGG | 0.280141 | 1:-58835104 | None:intergenic |
| TCTAGTTGCAAGACCCATTC+AGG | 0.301444 | 1:+58834826 | MsG0180003238.01.T01:CDS |
| TCAAAAGCTGTCTGTCTTAA+CGG | 0.317183 | 1:+58834781 | MsG0180003238.01.T01:CDS |
| AACTTCTCAGATTTGAATAA+AGG | 0.324415 | 1:-58834963 | None:intergenic |
| GAAGTGTGAAAACTGCTAAT+TGG | 0.330920 | 1:-58833005 | None:intergenic |
| CGTGATTGCCGCCGTTAGTA+TGG | 0.332639 | 1:-58833045 | None:intergenic |
| GCAGGCTGCAAAATTTGTTC+TGG | 0.348048 | 1:+58834725 | MsG0180003238.01.T01:CDS |
| AAACAAAGAGATCTGAGAAT+TGG | 0.348925 | 1:-58833258 | None:intergenic |
| AATGTACACACCATCATTCT+AGG | 0.356285 | 1:-58835131 | None:intergenic |
| GGAACTGTGGATTGCAGCTT+AGG | 0.380580 | 1:+58834847 | MsG0180003238.01.T01:CDS |
| CCAGGACTCGTATGGCTATA+TGG | 0.380916 | 1:+58834456 | MsG0180003238.01.T01:intron |
| AGAGATCTGAGAATTGGAAT+TGG | 0.391834 | 1:-58833252 | None:intergenic |
| ACGTGAATCCGTCGGATCTC+TGG | 0.396037 | 1:-58833139 | None:intergenic |
| TCTCCTTACGAGAGTAAAAC+TGG | 0.396842 | 1:-58834551 | None:intergenic |
| GATCTCTTTGTTTAGACCTA+AGG | 0.399270 | 1:+58833268 | MsG0180003238.01.T01:CDS |
| AAAATCAACAAAAGAACTAT+AGG | 0.400149 | 1:-58835021 | None:intergenic |
| GGTATACAATTAGCATTCTC+TGG | 0.422113 | 1:+58834868 | MsG0180003238.01.T01:CDS |
| CGACGGATTCACGTTGGGAT+TGG | 0.441401 | 1:+58833148 | MsG0180003238.01.T01:CDS |
| AAATGTTATATTGATTATGC+TGG | 0.446823 | 1:+58835162 | MsG0180003238.01.T01:three_prime_UTR |
| TGCAATCCACAGTTCCTGAA+TGG | 0.448720 | 1:-58834840 | None:intergenic |
| AAAGGCCGTAGAGCGAATAC+TGG | 0.466757 | 1:-58834945 | None:intergenic |
| GCAGGTTCTTGAATTTAAGA+AGG | 0.472061 | 1:+58834702 | MsG0180003238.01.T01:intron |
| GCAATCCACAGTTCCTGAAT+GGG | 0.474537 | 1:-58834839 | None:intergenic |
| TTCTTGAATTTAAGAAGGGC+AGG | 0.475638 | 1:+58834707 | MsG0180003238.01.T01:CDS |
| AAATACTTTGTTTGTGTCGC+CGG | 0.480152 | 1:-58833093 | None:intergenic |
| AGCTGTCTGTCTTAACGGTC+AGG | 0.480537 | 1:+58834786 | MsG0180003238.01.T01:CDS |
| ACCTATCAGCTCTTAACTCT+TGG | 0.485780 | 1:+58834902 | MsG0180003238.01.T01:CDS |
| AGATCCGACGGATTCACGTT+GGG | 0.494461 | 1:+58833143 | MsG0180003238.01.T01:CDS |
| CATTTAGAATAGAAGGGAGT+AGG | 0.498854 | 1:-58835097 | None:intergenic |
| AAAAGAACGAACCGCGACGA+AGG | 0.499053 | 1:-58833327 | None:intergenic |
| TATATTGATTATGCTGGATA+CGG | 0.504888 | 1:+58835168 | MsG0180003238.01.T01:three_prime_UTR |
| GGGATTGGCGTTCGCTTCGA+AGG | 0.508869 | 1:+58833163 | MsG0180003238.01.T01:CDS |
| CAGTTAAATAAGAATTCATA+AGG | 0.511766 | 1:-58835192 | None:intergenic |
| AACGAGATCTCATCGACCTT+AGG | 0.518253 | 1:-58833284 | None:intergenic |
| CATACTAACGGCGGCAATCA+CGG | 0.523509 | 1:+58833046 | MsG0180003238.01.T01:CDS |
| AATTTGTTCTGGAAAAGAGA+TGG | 0.524965 | 1:+58834736 | MsG0180003238.01.T01:CDS |
| ATTTGTTCTGGAAAAGAGAT+GGG | 0.526774 | 1:+58834737 | MsG0180003238.01.T01:CDS |
| TTAGAATAGAAGGGAGTAGG+TGG | 0.527620 | 1:-58835094 | None:intergenic |
| GAGCCATTTGCAATAAAAGC+AGG | 0.539452 | 1:-58834517 | None:intergenic |
| CAAATACATTTAGAATAGAA+GGG | 0.544699 | 1:-58835103 | None:intergenic |
| TCGTTGTTCCAGGACTCGTA+TGG | 0.551015 | 1:+58834448 | MsG0180003238.01.T01:intron |
| CAGGTTCTTGAATTTAAGAA+GGG | 0.554852 | 1:+58834703 | MsG0180003238.01.T01:intron |
| ATATGGTTGCATTTGCTGGT+CGG | 0.559957 | 1:+58834473 | MsG0180003238.01.T01:CDS |
| TGGACGCGTGTGTCTGTGCA+AGG | 0.560053 | 1:-58833119 | None:intergenic |
| TGGGTCTTGCAACTAGAAGT+TGG | 0.561016 | 1:-58834820 | None:intergenic |
| CTTCGCCAGTATTCGCTCTA+CGG | 0.577552 | 1:+58834940 | MsG0180003238.01.T01:CDS |
| TAGAATAGAAGGGAGTAGGT+GGG | 0.579387 | 1:-58835093 | None:intergenic |
| ACCAAGAGTTAAGAGCTGAT+AGG | 0.587698 | 1:-58834903 | None:intergenic |
| ATTTGCAATAAAAGCAGGAG+GGG | 0.604175 | 1:-58834512 | None:intergenic |
| TAGTATGGTGATAACCGCCA+TGG | 0.618677 | 1:-58833030 | None:intergenic |
| ATTTGTGAAACCTAGAATGA+TGG | 0.620825 | 1:+58835121 | MsG0180003238.01.T01:three_prime_UTR |
| CAAGACCCATTCAGGAACTG+TGG | 0.625926 | 1:+58834834 | MsG0180003238.01.T01:CDS |
| CCATTTGCAATAAAAGCAGG+AGG | 0.635505 | 1:-58834514 | None:intergenic |
| CGTAGAGCGAATACTGGCGA+AGG | 0.636590 | 1:-58834939 | None:intergenic |
| GAGATCCGACGGATTCACGT+TGG | 0.648636 | 1:+58833142 | MsG0180003238.01.T01:CDS |
| TTTCTAGCTTCAGCATACGC+CGG | 0.651746 | 1:+58833074 | MsG0180003238.01.T01:CDS |
| CAATCCCAACGTGAATCCGT+CGG | 0.652871 | 1:-58833147 | None:intergenic |
| GGCGGTTATCACCATACTAA+CGG | 0.662813 | 1:+58833034 | MsG0180003238.01.T01:CDS |
| CATTTGCAATAAAAGCAGGA+GGG | 0.666708 | 1:-58834513 | None:intergenic |
| ACACGCGTCCAGAGATCCGA+CGG | 0.668735 | 1:+58833131 | MsG0180003238.01.T01:CDS |
| TAATTCTTCTTCCTTCGTCG+CGG | 0.682591 | 1:+58833316 | MsG0180003238.01.T01:CDS |
| AGCGAGAGTCTAGAATCACA+CGG | 0.714759 | 1:-58833227 | None:intergenic |
| ACTAACGGCGGCAATCACGG+CGG | 0.742815 | 1:+58833049 | MsG0180003238.01.T01:CDS |
| GGTTATCACCATACTAACGG+CGG | 0.773209 | 1:+58833037 | MsG0180003238.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAATGTTATCAAATAA+TGG | + | Chr1:58833997-58834016 | MsG0180003238.01.T01:intron | 10.0% |
| !! | TTAATAATTGAATTCAATTA+GGG | + | Chr1:58833400-58833419 | MsG0180003238.01.T01:intron | 10.0% |
| !! | TTTAATAATTGAATTCAATT+AGG | + | Chr1:58833399-58833418 | MsG0180003238.01.T01:intron | 10.0% |
| !!! | CTTTTTTTAGTTTTTAATTT+TGG | + | Chr1:58834087-58834106 | MsG0180003238.01.T01:intron | 10.0% |
| !! | TGAGTTATTTAATTGAAAAT+AGG | + | Chr1:58834120-58834139 | MsG0180003238.01.T01:intron | 15.0% |
| !!! | TAGTTTATTTGATAATTAAC+TGG | + | Chr1:58833468-58833487 | MsG0180003238.01.T01:intron | 15.0% |
| !! | AAAATCAACAAAAGAACTAT+AGG | - | Chr1:58835024-58835043 | None:intergenic | 20.0% |
| !! | AATTGAGTTAGATAAAGATT+CGG | - | Chr1:58834293-58834312 | None:intergenic | 20.0% |
| !! | ATTAGAAAAACTTATCATAC+TGG | - | Chr1:58834999-58835018 | None:intergenic | 20.0% |
| !! | CAGTTAAATAAGAATTCATA+AGG | - | Chr1:58835195-58835214 | None:intergenic | 20.0% |
| !! | TTAATTGAAAATAGGAGTTA+GGG | + | Chr1:58834128-58834147 | MsG0180003238.01.T01:intron | 20.0% |
| !! | TTTAATTGAAAATAGGAGTT+AGG | + | Chr1:58834127-58834146 | MsG0180003238.01.T01:intron | 20.0% |
| !!! | AAATGTTATATTGATTATGC+TGG | + | Chr1:58835162-58835181 | MsG0180003238.01.T01:three_prime_UTR | 20.0% |
| !!! | ACAAATACATTTAGAATAGA+AGG | - | Chr1:58835107-58835126 | None:intergenic | 20.0% |
| !!! | ATTGAGAAATTTTTTTAACC+AGG | - | Chr1:58834583-58834602 | None:intergenic | 20.0% |
| !!! | ATTTACAATACAAGTTTTGT+AGG | + | Chr1:58834223-58834242 | MsG0180003238.01.T01:intron | 20.0% |
| !!! | ATTTTCGAGTATATCATATA+TGG | + | Chr1:58833645-58833664 | MsG0180003238.01.T01:intron | 20.0% |
| !!! | CAAATACATTTAGAATAGAA+GGG | - | Chr1:58835106-58835125 | None:intergenic | 20.0% |
| ! | AACCCTAATTTATTGTACTT+TGG | + | Chr1:58833503-58833522 | MsG0180003238.01.T01:intron | 25.0% |
| ! | AACTTCTCAGATTTGAATAA+AGG | - | Chr1:58834966-58834985 | None:intergenic | 25.0% |
| ! | ACCCAAAGTACAATAAATTA+GGG | - | Chr1:58833508-58833527 | None:intergenic | 25.0% |
| ! | ACCCTAATTTATTGTACTTT+GGG | + | Chr1:58833504-58833523 | MsG0180003238.01.T01:intron | 25.0% |
| ! | AGTACAATAAATTAGGGTTT+AGG | - | Chr1:58833502-58833521 | None:intergenic | 25.0% |
| ! | ATGATTACAACTACAACAAA+TGG | - | Chr1:58834653-58834672 | None:intergenic | 25.0% |
| ! | CTAAAAATCAAAGAGAAGAA+AGG | - | Chr1:58833355-58833374 | None:intergenic | 25.0% |
| ! | GTAATTATAAGTGTCAATGT+CGG | - | Chr1:58833871-58833890 | None:intergenic | 25.0% |
| ! | TACCCAAAGTACAATAAATT+AGG | - | Chr1:58833509-58833528 | None:intergenic | 25.0% |
| ! | TCTCAAATTATTAGCAATGA+CGG | + | Chr1:58833919-58833938 | MsG0180003238.01.T01:intron | 25.0% |
| !! | TATATTGATTATGCTGGATA+CGG | + | Chr1:58835168-58835187 | MsG0180003238.01.T01:three_prime_UTR | 25.0% |
| !!! | ATCTTTTGATTAGTTTGTGT+GGG | + | Chr1:58834413-58834432 | MsG0180003238.01.T01:intron | 25.0% |
| !!! | ATTGGTTTGATTTTGAAGTT+TGG | - | Chr1:58832990-58833009 | None:intergenic | 25.0% |
| !!! | TATCTTTTGATTAGTTTGTG+TGG | + | Chr1:58834412-58834431 | MsG0180003238.01.T01:intron | 25.0% |
| AAAATAGGAGTTAGGGAATT+TGG | + | Chr1:58834135-58834154 | MsG0180003238.01.T01:intron | 30.0% | |
| AAACAAAGAGATCTGAGAAT+TGG | - | Chr1:58833261-58833280 | None:intergenic | 30.0% | |
| AAAGCAAAAATTGACGAAAC+TGG | - | Chr1:58834386-58834405 | None:intergenic | 30.0% | |
| AGTTTACAACACAAAAACGA+GGG | + | Chr1:58834181-58834200 | MsG0180003238.01.T01:intron | 30.0% | |
| ATGAAGTGTAATCTTTGAAC+TGG | + | Chr1:58833555-58833574 | MsG0180003238.01.T01:intron | 30.0% | |
| ATTATAGCACTATTTCGTAG+AGG | + | Chr1:58834030-58834049 | MsG0180003238.01.T01:intron | 30.0% | |
| ATTTGTGAAACCTAGAATGA+TGG | + | Chr1:58835121-58835140 | MsG0180003238.01.T01:three_prime_UTR | 30.0% | |
| CAGGTTCTTGAATTTAAGAA+GGG | + | Chr1:58834703-58834722 | MsG0180003238.01.T01:intron | 30.0% | |
| CTAATTAACTGCGAAATTTC+CGG | + | Chr1:58833582-58833601 | MsG0180003238.01.T01:intron | 30.0% | |
| TAGTTTACAACACAAAAACG+AGG | + | Chr1:58834180-58834199 | MsG0180003238.01.T01:intron | 30.0% | |
| TTGTTAAATAGAAGCTAGAG+TGG | + | Chr1:58833726-58833745 | MsG0180003238.01.T01:intron | 30.0% | |
| ! | GATCAAAGTCTCTATGTTTT+GGG | + | Chr1:58833667-58833686 | MsG0180003238.01.T01:intron | 30.0% |
| !! | AATTTGTTCTGGAAAAGAGA+TGG | + | Chr1:58834736-58834755 | MsG0180003238.01.T01:CDS | 30.0% |
| !! | ATTTGTTCTGGAAAAGAGAT+GGG | + | Chr1:58834737-58834756 | MsG0180003238.01.T01:CDS | 30.0% |
| AATGTACACACCATCATTCT+AGG | - | Chr1:58835134-58835153 | None:intergenic | 35.0% | |
| AGAGATCTGAGAATTGGAAT+TGG | - | Chr1:58833255-58833274 | None:intergenic | 35.0% | |
| ATTTGCAATAAAAGCAGGAG+GGG | - | Chr1:58834515-58834534 | None:intergenic | 35.0% | |
| CATTTGCAATAAAAGCAGGA+GGG | - | Chr1:58834516-58834535 | None:intergenic | 35.0% | |
| GAAGTGTGAAAACTGCTAAT+TGG | - | Chr1:58833008-58833027 | None:intergenic | 35.0% | |
| GCAGGTTCTTGAATTTAAGA+AGG | + | Chr1:58834702-58834721 | MsG0180003238.01.T01:intron | 35.0% | |
| GGTATACAATTAGCATTCTC+TGG | + | Chr1:58834868-58834887 | MsG0180003238.01.T01:CDS | 35.0% | |
| TCAAAAGCTGTCTGTCTTAA+CGG | + | Chr1:58834781-58834800 | MsG0180003238.01.T01:CDS | 35.0% | |
| TCCAGTAAAAATGAGGTTTC+CGG | - | Chr1:58833604-58833623 | None:intergenic | 35.0% | |
| TCTTAAATTCAAGAACCTGC+AGG | - | Chr1:58834702-58834721 | None:intergenic | 35.0% | |
| TGCAGGAGTAAGATTTCAAA+TGG | - | Chr1:58834685-58834704 | None:intergenic | 35.0% | |
| TTCTTGAATTTAAGAAGGGC+AGG | + | Chr1:58834707-58834726 | MsG0180003238.01.T01:CDS | 35.0% | |
| TTTCCTAGCAAGTGGATAAT+GGG | - | Chr1:58834343-58834362 | None:intergenic | 35.0% | |
| ! | AAATACTTTGTTTGTGTCGC+CGG | - | Chr1:58833096-58833115 | None:intergenic | 35.0% |
| ! | ATTTGAAATCTTACTCCTGC+AGG | + | Chr1:58834684-58834703 | MsG0180003238.01.T01:intron | 35.0% |
| ! | CATTTAGAATAGAAGGGAGT+AGG | - | Chr1:58835100-58835119 | None:intergenic | 35.0% |
| ! | GATCTCTTTGTTTAGACCTA+AGG | + | Chr1:58833268-58833287 | MsG0180003238.01.T01:CDS | 35.0% |
| ! | GGATCAAAGTCTCTATGTTT+TGG | + | Chr1:58833666-58833685 | MsG0180003238.01.T01:intron | 35.0% |
| !! | ACCTCATTTTTACTGGACAT+TGG | + | Chr1:58833607-58833626 | MsG0180003238.01.T01:intron | 35.0% |
| !! | CCTCATTTTTACTGGACATT+GGG | + | Chr1:58833608-58833627 | MsG0180003238.01.T01:intron | 35.0% |
| !! | TGGACATTGGGTTTTAATGA+TGG | + | Chr1:58833620-58833639 | MsG0180003238.01.T01:intron | 35.0% |
| !! | TTGCAGATAGTGGATTGTTA+AGG | - | Chr1:58834058-58834077 | None:intergenic | 35.0% |
| !!! | AGACAGCTTTTGAGTTTTTC+GGG | - | Chr1:58834774-58834793 | None:intergenic | 35.0% |
| !!! | CAGACAGCTTTTGAGTTTTT+CGG | - | Chr1:58834775-58834794 | None:intergenic | 35.0% |
| ACCAAGAGTTAAGAGCTGAT+AGG | - | Chr1:58834906-58834925 | None:intergenic | 40.0% | |
| ACCTATCAGCTCTTAACTCT+TGG | + | Chr1:58834902-58834921 | MsG0180003238.01.T01:CDS | 40.0% | |
| ATTCCCATTATCCACTTGCT+AGG | + | Chr1:58834337-58834356 | MsG0180003238.01.T01:intron | 40.0% | |
| CAAATTCCACTGTGCTATAG+CGG | - | Chr1:58833759-58833778 | None:intergenic | 40.0% | |
| CCATTTGCAATAAAAGCAGG+AGG | - | Chr1:58834517-58834536 | None:intergenic | 40.0% | |
| CCCAATGTCCAGTAAAAATG+AGG | - | Chr1:58833611-58833630 | None:intergenic | 40.0% | |
| CTTTCCTAGCAAGTGGATAA+TGG | - | Chr1:58834344-58834363 | None:intergenic | 40.0% | |
| GAGCCATTTGCAATAAAAGC+AGG | - | Chr1:58834520-58834539 | None:intergenic | 40.0% | |
| GTGTTGTCAATTGCAGATAG+TGG | - | Chr1:58834068-58834087 | None:intergenic | 40.0% | |
| TAATTCTTCTTCCTTCGTCG+CGG | + | Chr1:58833316-58833335 | MsG0180003238.01.T01:CDS | 40.0% | |
| TAGAATAGAAGGGAGTAGGT+GGG | - | Chr1:58835096-58835115 | None:intergenic | 40.0% | |
| TATGAAGCACAGACACTCTT+TGG | + | Chr1:58833810-58833829 | MsG0180003238.01.T01:intron | 40.0% | |
| TCTCCTTACGAGAGTAAAAC+TGG | - | Chr1:58834554-58834573 | None:intergenic | 40.0% | |
| TTAGAATAGAAGGGAGTAGG+TGG | - | Chr1:58835097-58835116 | None:intergenic | 40.0% | |
| ! | ACGAAACTGGTGATGAACTA+AGG | - | Chr1:58834373-58834392 | None:intergenic | 40.0% |
| ! | ATATGGTTGCATTTGCTGGT+CGG | + | Chr1:58834473-58834492 | MsG0180003238.01.T01:CDS | 40.0% |
| ! | CAGTTTTCACACTTCTTCCA+TGG | + | Chr1:58833013-58833032 | MsG0180003238.01.T01:exon | 40.0% |
| ! | CATTATCCACTTGCTAGGAA+AGG | + | Chr1:58834342-58834361 | MsG0180003238.01.T01:intron | 40.0% |
| ! | TCTTTGGATTAGACTTGTCC+CGG | + | Chr1:58833826-58833845 | MsG0180003238.01.T01:intron | 40.0% |
| ! | TGACCAGTTTTACTCTCGTA+AGG | + | Chr1:58834548-58834567 | MsG0180003238.01.T01:intron | 40.0% |
| ! | TTTTCACACTTCTTCCATGG+CGG | + | Chr1:58833016-58833035 | MsG0180003238.01.T01:exon | 40.0% |
| !! | CCTCCTGCTTTTATTGCAAA+TGG | + | Chr1:58834514-58834533 | MsG0180003238.01.T01:CDS | 40.0% |
| !! | TCCGGAAACCTCATTTTTAC+TGG | + | Chr1:58833600-58833619 | MsG0180003238.01.T01:intron | 40.0% |
| !!! | CTCGTAAGGAGATTTTTTCC+TGG | + | Chr1:58834562-58834581 | MsG0180003238.01.T01:intron | 40.0% |
| AACGAGATCTCATCGACCTT+AGG | - | Chr1:58833287-58833306 | None:intergenic | 45.0% | |
| CGCTATAGCACAGTGGAATT+TGG | + | Chr1:58833757-58833776 | MsG0180003238.01.T01:intron | 45.0% | |
| CGTCCTATTTAGCACGGATA+CGG | - | Chr1:58833962-58833981 | None:intergenic | 45.0% | |
| GCAATCCACAGTTCCTGAAT+GGG | - | Chr1:58834842-58834861 | None:intergenic | 45.0% | |
| GGCGGTTATCACCATACTAA+CGG | + | Chr1:58833034-58833053 | MsG0180003238.01.T01:CDS | 45.0% | |
| GGCTATATGGTTGCATTTGC+TGG | + | Chr1:58834469-58834488 | MsG0180003238.01.T01:CDS | 45.0% | |
| GGTTATCACCATACTAACGG+CGG | + | Chr1:58833037-58833056 | MsG0180003238.01.T01:CDS | 45.0% | |
| GTATCGCGTCCTATTTAGCA+CGG | - | Chr1:58833968-58833987 | None:intergenic | 45.0% | |
| TAGTATGGTGATAACCGCCA+TGG | - | Chr1:58833033-58833052 | None:intergenic | 45.0% | |
| TCTAGTTGCAAGACCCATTC+AGG | + | Chr1:58834826-58834845 | MsG0180003238.01.T01:CDS | 45.0% | |
| TGCAATCCACAGTTCCTGAA+TGG | - | Chr1:58834843-58834862 | None:intergenic | 45.0% | |
| TGGGTCTTGCAACTAGAAGT+TGG | - | Chr1:58834823-58834842 | None:intergenic | 45.0% | |
| TGTCCGTATCCGTGCTAAAT+AGG | + | Chr1:58833956-58833975 | MsG0180003238.01.T01:intron | 45.0% | |
| TGTGTGTTTGTCGTTGTTCC+AGG | + | Chr1:58834438-58834457 | MsG0180003238.01.T01:intron | 45.0% | |
| ! | AGCGAGAGTCTAGAATCACA+CGG | - | Chr1:58833230-58833249 | None:intergenic | 45.0% |
| ! | GCAGGCTGCAAAATTTGTTC+TGG | + | Chr1:58834725-58834744 | MsG0180003238.01.T01:CDS | 45.0% |
| !! | GCAAGTGGATAATGGGAATG+TGG | - | Chr1:58834336-58834355 | None:intergenic | 45.0% |
| !! | TTTCTAGCTTCAGCATACGC+CGG | + | Chr1:58833074-58833093 | MsG0180003238.01.T01:CDS | 45.0% |
| AAAAGAACGAACCGCGACGA+AGG | - | Chr1:58833330-58833349 | None:intergenic | 50.0% | |
| AAAGGCCGTAGAGCGAATAC+TGG | - | Chr1:58834948-58834967 | None:intergenic | 50.0% | |
| AGCTGTCTGTCTTAACGGTC+AGG | + | Chr1:58834786-58834805 | MsG0180003238.01.T01:CDS | 50.0% | |
| CAAGACCCATTCAGGAACTG+TGG | + | Chr1:58834834-58834853 | MsG0180003238.01.T01:CDS | 50.0% | |
| CAATCCCAACGTGAATCCGT+CGG | - | Chr1:58833150-58833169 | None:intergenic | 50.0% | |
| CATACTAACGGCGGCAATCA+CGG | + | Chr1:58833046-58833065 | MsG0180003238.01.T01:CDS | 50.0% | |
| CCAGGACTCGTATGGCTATA+TGG | + | Chr1:58834456-58834475 | MsG0180003238.01.T01:intron | 50.0% | |
| CCATATAGCCATACGAGTCC+TGG | - | Chr1:58834459-58834478 | None:intergenic | 50.0% | |
| CTTCGCCAGTATTCGCTCTA+CGG | + | Chr1:58834940-58834959 | MsG0180003238.01.T01:CDS | 50.0% | |
| GATTAGACTTGTCCCGGTGT+CGG | + | Chr1:58833832-58833851 | MsG0180003238.01.T01:intron | 50.0% | |
| GCAATGCCTTTCCTAGCAAG+TGG | - | Chr1:58834351-58834370 | None:intergenic | 50.0% | |
| GTTCTACCGCTATAGCACAG+TGG | + | Chr1:58833750-58833769 | MsG0180003238.01.T01:intron | 50.0% | |
| TCGTTGTTCCAGGACTCGTA+TGG | + | Chr1:58834448-58834467 | MsG0180003238.01.T01:intron | 50.0% | |
| TTTAGCACGGATACGGACAC+CGG | - | Chr1:58833955-58833974 | None:intergenic | 50.0% | |
| ! | AGATCCGACGGATTCACGTT+GGG | + | Chr1:58833143-58833162 | MsG0180003238.01.T01:CDS | 50.0% |
| ! | GGAACTGTGGATTGCAGCTT+AGG | + | Chr1:58834847-58834866 | MsG0180003238.01.T01:CDS | 50.0% |
| ACGTGAATCCGTCGGATCTC+TGG | - | Chr1:58833142-58833161 | None:intergenic | 55.0% | |
| CGTAGAGCGAATACTGGCGA+AGG | - | Chr1:58834942-58834961 | None:intergenic | 55.0% | |
| CGTGATTGCCGCCGTTAGTA+TGG | - | Chr1:58833048-58833067 | None:intergenic | 55.0% | |
| TCGCGTCAGCGTCACAACAA+CGG | - | Chr1:58833788-58833807 | None:intergenic | 55.0% | |
| ! | CGACGGATTCACGTTGGGAT+TGG | + | Chr1:58833148-58833167 | MsG0180003238.01.T01:CDS | 55.0% |
| ! | GAGATCCGACGGATTCACGT+TGG | + | Chr1:58833142-58833161 | MsG0180003238.01.T01:CDS | 55.0% |
| ACACGACACGTGTCCGACAC+CGG | - | Chr1:58833848-58833867 | None:intergenic | 60.0% | |
| ACACGCGTCCAGAGATCCGA+CGG | + | Chr1:58833131-58833150 | MsG0180003238.01.T01:CDS | 60.0% | |
| ACTAACGGCGGCAATCACGG+CGG | + | Chr1:58833049-58833068 | MsG0180003238.01.T01:CDS | 60.0% | |
| CAATGACGGCGTGTCGTGTC+CGG | + | Chr1:58833933-58833952 | MsG0180003238.01.T01:intron | 60.0% | |
| TGGACGCGTGTGTCTGTGCA+AGG | - | Chr1:58833122-58833141 | None:intergenic | 60.0% | |
| ! | GGGATTGGCGTTCGCTTCGA+AGG | + | Chr1:58833163-58833182 | MsG0180003238.01.T01:CDS | 60.0% |
| CACGACACGTGTCCGACACC+GGG | - | Chr1:58833847-58833866 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 58832942 | 58835245 | 58832942 | ID=MsG0180003238.01;Name=MsG0180003238.01 |
| Chr1 | mRNA | 58832942 | 58835245 | 58832942 | ID=MsG0180003238.01.T01;Parent=MsG0180003238.01;Name=MsG0180003238.01.T01;_AED=0.28;_eAED=0.28;_QI=90|1|1|1|1|1|3|228|240 |
| Chr1 | exon | 58832942 | 58833337 | 58832942 | ID=MsG0180003238.01.T01:exon:3767;Parent=MsG0180003238.01.T01 |
| Chr1 | exon | 58834460 | 58834564 | 58834460 | ID=MsG0180003238.01.T01:exon:3768;Parent=MsG0180003238.01.T01 |
| Chr1 | exon | 58834706 | 58835245 | 58834706 | ID=MsG0180003238.01.T01:exon:3769;Parent=MsG0180003238.01.T01 |
| Chr1 | five_prime_UTR | 58832942 | 58833031 | 58832942 | ID=MsG0180003238.01.T01:five_prime_utr;Parent=MsG0180003238.01.T01 |
| Chr1 | CDS | 58833032 | 58833337 | 58833032 | ID=MsG0180003238.01.T01:cds;Parent=MsG0180003238.01.T01 |
| Chr1 | CDS | 58834460 | 58834564 | 58834460 | ID=MsG0180003238.01.T01:cds;Parent=MsG0180003238.01.T01 |
| Chr1 | CDS | 58834706 | 58835017 | 58834706 | ID=MsG0180003238.01.T01:cds;Parent=MsG0180003238.01.T01 |
| Chr1 | three_prime_UTR | 58835018 | 58835245 | 58835018 | ID=MsG0180003238.01.T01:three_prime_utr;Parent=MsG0180003238.01.T01 |
| Gene Sequence |
| Protein sequence |
