Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041591.01.T02 | XP_003626337.1 | 92.045 | 88 | 3 | 1 | 1 | 88 | 1 | 84 | 4.73E-47 | 157 |
| MsG0780041591.01.T01 | AFK48417.1 | 89.908 | 109 | 7 | 1 | 1 | 109 | 1 | 105 | 1.42E-60 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041591.01.T01 | Q8L9T7 | 59.223 | 103 | 42 | 0 | 4 | 106 | 6 | 108 | 9.47E-39 | 130 |
| MsG0780041591.01.T02 | Q9SAZ5 | 58.824 | 85 | 35 | 0 | 4 | 88 | 5 | 89 | 2.88E-31 | 110 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041591.01.T01 | I3T7C5 | 89.908 | 109 | 7 | 1 | 1 | 109 | 1 | 105 | 6.77e-61 | 192 |
| MsG0780041591.01.T02 | A2Q3H8 | 92.045 | 88 | 3 | 1 | 1 | 88 | 1 | 84 | 2.26e-47 | 157 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048694.01 | MsG0780041591.01 | -0.804497 | 2.099384e-49 | 1.084063e-46 |
| MsG0080048695.01 | MsG0780041591.01 | -0.805443 | 1.331716e-49 | 7.046386e-47 |
| MsG0080048889.01 | MsG0780041591.01 | 0.842910 | 1.937979e-58 | 2.981815e-55 |
| MsG0080049008.01 | MsG0780041591.01 | 0.846087 | 2.707309e-59 | 4.606936e-56 |
| MsG0080049023.01 | MsG0780041591.01 | -0.817967 | 2.505905e-52 | 1.851487e-49 |
| MsG0180000367.01 | MsG0780041591.01 | 0.811573 | 6.543473e-51 | 4.064876e-48 |
| MsG0180000497.01 | MsG0780041591.01 | 0.800929 | 1.144576e-48 | 5.396381e-46 |
| MsG0180000552.01 | MsG0780041591.01 | 0.800564 | 1.358238e-48 | 6.344544e-46 |
| MsG0180000719.01 | MsG0780041591.01 | -0.812304 | 4.535319e-51 | 2.873251e-48 |
| MsG0180001147.01 | MsG0780041591.01 | -0.832600 | 8.616134e-56 | 9.677074e-53 |
| MsG0180003238.01 | MsG0780041591.01 | 0.856146 | 3.918287e-62 | 9.261223e-59 |
| MsG0180003405.01 | MsG0780041591.01 | -0.802505 | 5.434277e-49 | 2.666536e-46 |
| MsG0180003430.01 | MsG0780041591.01 | 0.821579 | 3.746530e-53 | 3.059907e-50 |
| MsG0180003484.01 | MsG0780041591.01 | 0.821877 | 3.196824e-53 | 2.633335e-50 |
| MsG0180003905.01 | MsG0780041591.01 | 0.850049 | 2.183237e-60 | 4.222834e-57 |
| MsG0180004058.01 | MsG0780041591.01 | 0.800787 | 1.223563e-48 | 5.747640e-46 |
| MsG0180004064.01 | MsG0780041591.01 | 0.818695 | 1.714061e-52 | 1.292131e-49 |
| MsG0180004124.01 | MsG0780041591.01 | -0.841925 | 3.535091e-58 | 5.273805e-55 |
| MsG0180004125.01 | MsG0780041591.01 | -0.845129 | 4.924131e-59 | 8.124159e-56 |
| MsG0180004322.01 | MsG0780041591.01 | -0.802276 | 6.058585e-49 | 2.955597e-46 |
| MsG0180004467.01 | MsG0780041591.01 | 0.814067 | 1.860247e-51 | 1.235751e-48 |
| MsG0180004510.01 | MsG0780041591.01 | 0.804703 | 1.901554e-49 | 9.871842e-47 |
| MsG0180004559.01 | MsG0780041591.01 | 0.819863 | 9.290274e-53 | 7.234483e-50 |
| MsG0180004737.01 | MsG0780041591.01 | -0.809069 | 2.270661e-50 | 1.320081e-47 |
| MsG0180005028.01 | MsG0780041591.01 | 0.822381 | 2.442380e-53 | 2.041099e-50 |
| MsG0180005369.01 | MsG0780041591.01 | -0.828412 | 9.120569e-55 | 9.059078e-52 |
| MsG0180005474.01 | MsG0780041591.01 | -0.804426 | 2.172747e-49 | 1.119879e-46 |
| MsG0180005514.01 | MsG0780041591.01 | 0.817333 | 3.482282e-52 | 2.528648e-49 |
| MsG0180005780.01 | MsG0780041591.01 | 0.817286 | 3.568138e-52 | 2.587629e-49 |
| MsG0180005819.01 | MsG0780041591.01 | 0.815082 | 1.109072e-51 | 7.572118e-49 |
| MsG0180005833.01 | MsG0780041591.01 | -0.803362 | 3.615104e-49 | 1.813008e-46 |
| MsG0180005984.01 | MsG0780041591.01 | 0.820352 | 7.178062e-53 | 5.666100e-50 |
| MsG0180006116.01 | MsG0780041591.01 | 0.806006 | 1.014157e-49 | 5.444563e-47 |
| MsG0180006182.01 | MsG0780041591.01 | 0.815203 | 1.042648e-51 | 7.141953e-49 |
| MsG0180006191.01 | MsG0780041591.01 | 0.810861 | 9.336875e-51 | 5.692354e-48 |
| MsG0280006381.01 | MsG0780041591.01 | -0.805989 | 1.022874e-49 | 5.488835e-47 |
| MsG0780040276.01 | MsG0780041591.01 | 0.803085 | 4.124204e-49 | 2.053714e-46 |
| MsG0780040460.01 | MsG0780041591.01 | 0.809548 | 1.791959e-50 | 1.055218e-47 |
| MsG0780040978.01 | MsG0780041591.01 | 0.846525 | 2.056898e-59 | 3.550481e-56 |
| MsG0780040990.01 | MsG0780041591.01 | 0.828333 | 9.527767e-55 | 9.441034e-52 |
| MsG0780041180.01 | MsG0780041591.01 | 0.810023 | 1.416465e-50 | 8.446348e-48 |
| MsG0780041403.01 | MsG0780041591.01 | 0.805270 | 1.447343e-49 | 7.624153e-47 |
| MsG0780041436.01 | MsG0780041591.01 | 0.804127 | 2.507859e-49 | 1.282767e-46 |
| MsG0780041531.01 | MsG0780041591.01 | -0.805938 | 1.048062e-49 | 5.616671e-47 |
| MsG0780041591.01 | MsG0780041691.01 | -0.807271 | 5.483669e-50 | 3.041161e-47 |
| MsG0780041591.01 | MsG0880042122.01 | 0.831856 | 1.316506e-55 | 1.446680e-52 |
| MsG0780041591.01 | MsG0880042833.01 | 0.829771 | 4.271171e-55 | 4.414756e-52 |
| MsG0780041591.01 | MsG0880043472.01 | 0.815871 | 7.402753e-52 | 5.164586e-49 |
| MsG0780041591.01 | MsG0880044356.01 | 0.819710 | 1.006837e-52 | 7.806997e-50 |
| MsG0780041591.01 | MsG0880044688.01 | 0.816841 | 4.492609e-52 | 3.218731e-49 |
| MsG0780041591.01 | MsG0880045356.01 | 0.822734 | 2.021205e-53 | 1.706172e-50 |
| MsG0780041591.01 | MsG0880045703.01 | -0.812224 | 4.720252e-51 | 2.984166e-48 |
| MsG0780041591.01 | MsG0880045909.01 | 0.829005 | 6.555793e-55 | 6.624299e-52 |
| MsG0780041591.01 | MsG0880045991.01 | 0.804062 | 2.586755e-49 | 1.320988e-46 |
| MsG0780041591.01 | MsG0880046010.01 | -0.847026 | 1.500217e-59 | 2.631442e-56 |
| MsG0780041591.01 | MsG0880046174.01 | -0.833146 | 6.306802e-56 | 7.200270e-53 |
| MsG0780041591.01 | MsG0880046341.01 | -0.802867 | 4.575350e-49 | 2.265892e-46 |
| MsG0780041591.01 | MsG0880046630.01 | -0.800982 | 1.116008e-48 | 5.269061e-46 |
| MsG0780041591.01 | MsG0880047057.01 | 0.844138 | 9.102371e-59 | 1.455821e-55 |
| MsG0780041591.01 | MsG0880047090.01 | 0.808145 | 3.576805e-50 | 2.029473e-47 |
| MsG0780041591.01 | MsG0880047331.01 | 0.813952 | 1.972029e-51 | 1.305877e-48 |
| MsG0780041591.01 | MsG0880047450.01 | 0.827330 | 1.660948e-54 | 1.598609e-51 |
| MsG0780041591.01 | MsG0880047500.01 | 0.808219 | 3.448586e-50 | 1.960562e-47 |
| MsG0280010617.01 | MsG0780041591.01 | 0.829278 | 5.628592e-55 | 5.734819e-52 |
| MsG0280010854.01 | MsG0780041591.01 | -0.821564 | 3.775669e-53 | 3.082626e-50 |
| MsG0280011106.01 | MsG0780041591.01 | 0.802493 | 5.464784e-49 | 2.680623e-46 |
| MsG0280011269.01 | MsG0780041591.01 | 0.820804 | 5.652585e-53 | 4.518428e-50 |
| MsG0280011281.01 | MsG0780041591.01 | -0.807758 | 4.321890e-50 | 2.427356e-47 |
| MsG0380012148.01 | MsG0780041591.01 | -0.807800 | 4.234677e-50 | 2.380995e-47 |
| MsG0380012818.01 | MsG0780041591.01 | 0.848089 | 7.654405e-60 | 1.388713e-56 |
| MsG0380013063.01 | MsG0780041591.01 | -0.808589 | 2.875625e-50 | 1.650640e-47 |
| MsG0380014029.01 | MsG0780041591.01 | -0.804762 | 1.849104e-49 | 9.614391e-47 |
| MsG0380014639.01 | MsG0780041591.01 | -0.808065 | 3.718838e-50 | 2.105551e-47 |
| MsG0380014642.01 | MsG0780041591.01 | -0.812934 | 3.301405e-51 | 2.126640e-48 |
| MsG0380014735.01 | MsG0780041591.01 | -0.815852 | 7.476532e-52 | 5.213170e-49 |
| MsG0680034139.01 | MsG0780041591.01 | 0.812415 | 4.288927e-51 | 2.725448e-48 |
| MsG0680035584.01 | MsG0780041591.01 | -0.816226 | 6.168556e-52 | 4.345733e-49 |
| MsG0480018486.01 | MsG0780041591.01 | 0.825448 | 4.661615e-54 | 4.249876e-51 |
| MsG0480018767.01 | MsG0780041591.01 | 0.808892 | 2.477300e-50 | 1.433340e-47 |
| MsG0480021175.01 | MsG0780041591.01 | 0.839063 | 1.981929e-57 | 2.705644e-54 |
| MsG0480021224.01 | MsG0780041591.01 | 0.834947 | 2.231448e-56 | 2.688991e-53 |
| MsG0480021433.01 | MsG0780041591.01 | 0.805253 | 1.459658e-49 | 7.685399e-47 |
| MsG0480021740.01 | MsG0780041591.01 | 0.806496 | 7.997175e-50 | 4.347078e-47 |
| MsG0480023067.01 | MsG0780041591.01 | 0.819799 | 9.604705e-53 | 7.466499e-50 |
| MsG0480023125.01 | MsG0780041591.01 | 0.813533 | 2.439229e-51 | 1.597101e-48 |
| MsG0480023152.01 | MsG0780041591.01 | -0.814616 | 1.406761e-51 | 9.484824e-49 |
| MsG0480023244.01 | MsG0780041591.01 | -0.804880 | 1.746522e-49 | 9.109411e-47 |
| MsG0480023322.01 | MsG0780041591.01 | 0.810338 | 1.211093e-50 | 7.280885e-48 |
| MsG0480023626.01 | MsG0780041591.01 | 0.813094 | 3.045688e-51 | 1.970295e-48 |
| MsG0480023663.01 | MsG0780041591.01 | 0.866091 | 3.672889e-65 | 1.222865e-61 |
| MsG0480023851.01 | MsG0780041591.01 | -0.804457 | 2.140879e-49 | 1.104351e-46 |
| MsG0580024804.01 | MsG0780041591.01 | -0.808550 | 2.931486e-50 | 1.681069e-47 |
| MsG0580025486.01 | MsG0780041591.01 | -0.826553 | 2.547250e-54 | 2.396565e-51 |
| MsG0580025620.01 | MsG0780041591.01 | 0.853571 | 2.188512e-61 | 4.750015e-58 |
| MsG0580025633.01 | MsG0780041591.01 | 0.843119 | 1.704641e-58 | 2.640102e-55 |
| MsG0580026029.01 | MsG0780041591.01 | 0.848869 | 4.655723e-60 | 8.664709e-57 |
| MsG0380015402.01 | MsG0780041591.01 | 0.843123 | 1.699869e-58 | 2.633077e-55 |
| MsG0380015828.01 | MsG0780041591.01 | -0.833073 | 6.576665e-56 | 7.492121e-53 |
| MsG0380015985.01 | MsG0780041591.01 | -0.802902 | 4.500517e-49 | 2.230818e-46 |
| MsG0380016031.01 | MsG0780041591.01 | 0.832405 | 9.634106e-56 | 1.075780e-52 |
| MsG0380016250.01 | MsG0780041591.01 | 0.812831 | 3.478246e-51 | 2.234349e-48 |
| MsG0380016380.01 | MsG0780041591.01 | -0.826643 | 2.423513e-54 | 2.286136e-51 |
| MsG0380016393.01 | MsG0780041591.01 | 0.825218 | 5.283311e-54 | 4.785866e-51 |
| MsG0380016485.01 | MsG0780041591.01 | 0.807421 | 5.097082e-50 | 2.837766e-47 |
| MsG0380017380.01 | MsG0780041591.01 | 0.810408 | 1.169948e-50 | 7.046430e-48 |
| MsG0380017588.01 | MsG0780041591.01 | 0.830335 | 3.111489e-55 | 3.268562e-52 |
| MsG0380017826.01 | MsG0780041591.01 | 0.802185 | 6.326327e-49 | 3.078911e-46 |
| MsG0380018035.01 | MsG0780041591.01 | -0.816048 | 6.759534e-52 | 4.739131e-49 |
| MsG0480018362.01 | MsG0780041591.01 | 0.821381 | 4.162505e-53 | 3.380903e-50 |
| MsG0580027276.01 | MsG0780041591.01 | -0.812770 | 3.587375e-51 | 2.300840e-48 |
| MsG0580028159.01 | MsG0780041591.01 | -0.817111 | 3.906903e-52 | 2.819770e-49 |
| MsG0580028302.01 | MsG0780041591.01 | 0.803348 | 3.639125e-49 | 1.824434e-46 |
| MsG0580028565.01 | MsG0780041591.01 | 0.822430 | 2.378976e-53 | 1.990851e-50 |
| MsG0580029696.01 | MsG0780041591.01 | 0.815964 | 7.057712e-52 | 4.936577e-49 |
| MsG0580029792.01 | MsG0780041591.01 | -0.800618 | 1.324755e-48 | 6.196578e-46 |
| MsG0580030179.01 | MsG0780041591.01 | 0.807453 | 5.018699e-50 | 2.796486e-47 |
| MsG0280007288.01 | MsG0780041591.01 | -0.804664 | 1.937552e-49 | 1.004860e-46 |
| MsG0280007291.01 | MsG0780041591.01 | -0.800644 | 1.308367e-48 | 6.124053e-46 |
| MsG0280007426.01 | MsG0780041591.01 | 0.807588 | 4.696427e-50 | 2.625906e-47 |
| MsG0280007427.01 | MsG0780041591.01 | 0.806688 | 7.286043e-50 | 3.979887e-47 |
| MsG0280007653.01 | MsG0780041591.01 | -0.844042 | 9.659848e-59 | 1.540425e-55 |
| MsG0280007667.01 | MsG0780041591.01 | 0.815519 | 8.868713e-52 | 6.128420e-49 |
| MsG0280007786.01 | MsG0780041591.01 | 0.814887 | 1.225324e-51 | 8.321524e-49 |
| MsG0280009094.01 | MsG0780041591.01 | -0.801795 | 7.606131e-49 | 3.665364e-46 |
| MsG0280009526.01 | MsG0780041591.01 | 0.825092 | 5.658728e-54 | 5.107602e-51 |
| MsG0280009742.01 | MsG0780041591.01 | -0.800861 | 1.181467e-48 | 5.560799e-46 |
| MsG0280010142.01 | MsG0780041591.01 | -0.802302 | 5.982971e-49 | 2.920810e-46 |
| MsG0780037458.01 | MsG0780041591.01 | -0.812173 | 4.844588e-51 | 3.058332e-48 |
| MsG0780038305.01 | MsG0780041591.01 | 0.846107 | 2.672449e-59 | 4.550646e-56 |
| MsG0780038321.01 | MsG0780041591.01 | 0.812497 | 4.115472e-51 | 2.620807e-48 |
| MsG0780038393.01 | MsG0780041591.01 | 0.806326 | 8.686929e-50 | 4.701509e-47 |
| MsG0780038919.01 | MsG0780041591.01 | 0.807877 | 4.078018e-50 | 2.297393e-47 |
| MsG0780039234.01 | MsG0780041591.01 | 0.818489 | 1.908516e-52 | 1.430640e-49 |
| MsG0780039287.01 | MsG0780041591.01 | -0.812981 | 3.224811e-51 | 2.079913e-48 |
| MsG0780039431.01 | MsG0780041591.01 | 0.806493 | 8.010442e-50 | 4.353910e-47 |
| MsG0780039916.01 | MsG0780041591.01 | 0.800222 | 1.594949e-48 | 7.385815e-46 |
| MsG0780040118.01 | MsG0780041591.01 | 0.821114 | 4.795899e-53 | 3.866794e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0780041591.01 | MsG0780041591.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041591.01.T02 | MTR_7g114020 | 92.045 | 88 | 3 | 1 | 1 | 88 | 1 | 84 | 5.73e-51 | 157 |
| MsG0780041591.01.T02 | MTR_1g082290 | 67.045 | 88 | 28 | 1 | 1 | 88 | 1 | 87 | 9.24e-35 | 116 |
| MsG0780041591.01.T02 | MTR_1g089130 | 51.807 | 83 | 39 | 1 | 6 | 88 | 3 | 84 | 1.03e-26 | 95.9 |
| MsG0780041591.01.T02 | MTR_2g020770 | 60.000 | 85 | 33 | 1 | 4 | 88 | 3 | 86 | 1.22e-23 | 87.8 |
| MsG0780041591.01.T02 | MTR_2g020770 | 60.000 | 85 | 33 | 1 | 4 | 88 | 3 | 86 | 1.76e-23 | 87.8 |
| MsG0780041591.01.T02 | MTR_2g100880 | 46.914 | 81 | 42 | 1 | 8 | 88 | 7 | 86 | 1.53e-21 | 82.8 |
| MsG0780041591.01.T02 | MTR_2g100900 | 46.914 | 81 | 42 | 1 | 8 | 88 | 7 | 86 | 1.61e-21 | 82.4 |
| MsG0780041591.01.T01 | MTR_7g114020 | 89.908 | 109 | 7 | 1 | 1 | 109 | 1 | 105 | 1.78e-64 | 192 |
| MsG0780041591.01.T01 | MTR_1g082290 | 67.308 | 104 | 33 | 1 | 1 | 104 | 1 | 103 | 3.06e-45 | 144 |
| MsG0780041591.01.T01 | MTR_1g089130 | 52.525 | 99 | 46 | 1 | 6 | 104 | 3 | 100 | 1.20e-34 | 117 |
| MsG0780041591.01.T01 | MTR_2g020770 | 61.386 | 101 | 38 | 1 | 4 | 104 | 3 | 102 | 3.37e-33 | 113 |
| MsG0780041591.01.T01 | MTR_2g020770 | 61.386 | 101 | 38 | 1 | 4 | 104 | 3 | 102 | 4.74e-33 | 112 |
| MsG0780041591.01.T01 | MTR_2g100880 | 48.315 | 89 | 45 | 1 | 8 | 96 | 7 | 94 | 7.48e-26 | 94.4 |
| MsG0780041591.01.T01 | MTR_2g100900 | 48.315 | 89 | 45 | 1 | 8 | 96 | 7 | 94 | 7.65e-26 | 94.4 |
| MsG0780041591.01.T01 | MTR_2g103870 | 48.837 | 86 | 44 | 0 | 18 | 103 | 20 | 105 | 1.49e-18 | 75.9 |
| MsG0780041591.01.T01 | MTR_4g010160 | 50.000 | 88 | 44 | 0 | 16 | 103 | 6 | 93 | 2.38e-15 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041591.01.T02 | AT5G39340 | 58.824 | 85 | 35 | 0 | 4 | 88 | 5 | 89 | 2.93e-32 | 110 |
| MsG0780041591.01.T02 | AT5G39340 | 58.824 | 85 | 35 | 0 | 4 | 88 | 38 | 122 | 5.98e-32 | 110 |
| MsG0780041591.01.T02 | AT5G39340 | 58.824 | 85 | 35 | 0 | 4 | 88 | 54 | 138 | 9.31e-32 | 110 |
| MsG0780041591.01.T02 | AT5G39340 | 58.824 | 85 | 35 | 0 | 4 | 88 | 54 | 138 | 9.31e-32 | 110 |
| MsG0780041591.01.T02 | AT1G03430 | 60.000 | 85 | 34 | 0 | 4 | 88 | 6 | 90 | 6.01e-31 | 107 |
| MsG0780041591.01.T02 | AT1G03430 | 60.000 | 85 | 34 | 0 | 4 | 88 | 6 | 90 | 6.27e-31 | 106 |
| MsG0780041591.01.T02 | AT3G29350 | 55.294 | 85 | 38 | 0 | 4 | 88 | 5 | 89 | 1.01e-29 | 102 |
| MsG0780041591.01.T02 | AT3G29350 | 55.294 | 85 | 38 | 0 | 4 | 88 | 5 | 89 | 5.14e-29 | 102 |
| MsG0780041591.01.T02 | AT3G21510 | 60.000 | 85 | 33 | 1 | 4 | 88 | 3 | 86 | 2.26e-21 | 82.4 |
| MsG0780041591.01.T02 | AT3G16360 | 43.902 | 82 | 45 | 1 | 7 | 88 | 1 | 81 | 2.50e-20 | 79.3 |
| MsG0780041591.01.T02 | AT3G16360 | 44.118 | 68 | 37 | 1 | 21 | 88 | 9 | 75 | 6.84e-17 | 70.1 |
| MsG0780041591.01.T02 | AT4G04402 | 49.057 | 53 | 26 | 1 | 22 | 73 | 24 | 76 | 3.30e-12 | 58.9 |
| MsG0780041591.01.T01 | AT1G03430 | 59.223 | 103 | 42 | 0 | 4 | 106 | 6 | 108 | 8.76e-40 | 130 |
| MsG0780041591.01.T01 | AT1G03430 | 59.223 | 103 | 42 | 0 | 4 | 106 | 6 | 108 | 9.66e-40 | 130 |
| MsG0780041591.01.T01 | AT5G39340 | 55.340 | 103 | 46 | 0 | 4 | 106 | 5 | 107 | 6.36e-39 | 127 |
| MsG0780041591.01.T01 | AT5G39340 | 55.340 | 103 | 46 | 0 | 4 | 106 | 38 | 140 | 1.57e-38 | 127 |
| MsG0780041591.01.T01 | AT5G39340 | 55.340 | 103 | 46 | 0 | 4 | 106 | 54 | 156 | 2.26e-38 | 128 |
| MsG0780041591.01.T01 | AT5G39340 | 55.340 | 103 | 46 | 0 | 4 | 106 | 54 | 156 | 2.26e-38 | 128 |
| MsG0780041591.01.T01 | AT3G29350 | 52.830 | 106 | 50 | 0 | 4 | 109 | 5 | 110 | 2.75e-38 | 125 |
| MsG0780041591.01.T01 | AT3G29350 | 52.830 | 106 | 50 | 0 | 4 | 109 | 5 | 110 | 1.60e-37 | 124 |
| MsG0780041591.01.T01 | AT3G21510 | 59.406 | 101 | 40 | 1 | 4 | 104 | 3 | 102 | 5.79e-30 | 105 |
| MsG0780041591.01.T01 | AT3G16360 | 43.564 | 101 | 56 | 1 | 7 | 107 | 1 | 100 | 2.87e-27 | 98.2 |
| MsG0780041591.01.T01 | AT3G16360 | 43.678 | 87 | 48 | 1 | 21 | 107 | 9 | 94 | 7.13e-24 | 89.0 |
| MsG0780041591.01.T01 | AT1G80100 | 44.660 | 103 | 57 | 0 | 3 | 105 | 5 | 107 | 5.59e-13 | 61.6 |
| MsG0780041591.01.T01 | AT1G80100 | 44.660 | 103 | 57 | 0 | 3 | 105 | 5 | 107 | 8.16e-13 | 61.2 |
| MsG0780041591.01.T01 | AT4G04402 | 49.057 | 53 | 26 | 1 | 22 | 73 | 24 | 76 | 5.53e-12 | 59.3 |
Find 12 sgRNAs with CRISPR-Local
Find 44 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGAAGCTTCTTAATCAAT+TGG | 0.405079 | 7:+92799900 | MsG0780041591.01.T01:CDS |
| AGTGGTCACTCTCTTCTTTG+AGG | 0.421547 | 7:+92799873 | MsG0780041591.01.T01:CDS |
| ACCACTTCAACAACAAAGTC+AGG | 0.424359 | 7:-92799856 | None:intergenic |
| ATTAGAATTATACATTACTT+TGG | 0.446513 | 7:-92799984 | None:intergenic |
| CATCTTGAAGTAGTTGAAGC+TGG | 0.469279 | 7:-92799825 | None:intergenic |
| TGGAGCTGCTGCCTTTCAGC+TGG | 0.470844 | 7:-92800068 | None:intergenic |
| AGCTGAAAGGCAGCAGCTCC+AGG | 0.471527 | 7:+92800070 | MsG0780041591.01.T01:CDS |
| CCCTGACTTTGTTGTTGAAG+TGG | 0.477305 | 7:+92799855 | MsG0780041591.01.T01:CDS |
| CAAAAGTTCAATATATTACC+TGG | 0.505739 | 7:-92800088 | None:intergenic |
| ATTAATCCCAAGCAGAGGCC+AGG | 0.527313 | 7:+92800005 | MsG0780041591.01.T01:intron |
| GCTCTTGTTCACCAGCTGAA+AGG | 0.590228 | 7:+92800057 | MsG0780041591.01.T01:CDS |
| CCACTTCAACAACAAAGTCA+GGG | 0.677112 | 7:-92799855 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATAACATTGATTTTAAA+AGG | + | Chr7:92800028-92800047 | MsG0780041591.01.T01:CDS | 10.0% |
| !!! | AAATAACATTGATTTTAAAA+GGG | + | Chr7:92800029-92800048 | MsG0780041591.01.T01:CDS | 10.0% |
| !!! | TTTTCTTTATTTTATGTATA+GGG | + | Chr7:92799960-92799979 | MsG0780041591.01.T01:intron | 10.0% |
| !! | ATTAGAATTATACATTACTT+TGG | - | Chr7:92799987-92800006 | None:intergenic | 15.0% |
| !!! | CTTTTCTTTATTTTATGTAT+AGG | + | Chr7:92799959-92799978 | MsG0780041591.01.T01:intron | 15.0% |
| !! | AAAGAAAGATAGAAAGAAAA+TGG | - | Chr7:92799754-92799773 | None:intergenic | 20.0% |
| !!! | ATACTTCTTATCTTGTTTTA+AGG | - | Chr7:92800246-92800265 | None:intergenic | 20.0% |
| !!! | CAACTTGTATAATTTTGATA+AGG | + | Chr7:92800283-92800302 | MsG0780041591.01.T01:intron | 20.0% |
| !!! | TAAAATCAATGTTATTTTCC+TGG | - | Chr7:92800026-92800045 | None:intergenic | 20.0% |
| ! | CAAAAGTTCAATATATTACC+TGG | - | Chr7:92800091-92800110 | None:intergenic | 25.0% |
| ! | CAATTGGAAAAAGAAATGTA+AGG | + | Chr7:92799916-92799935 | MsG0780041591.01.T01:intron | 25.0% |
| ! | TATCTTTCTTTCTTCATTTG+TGG | + | Chr7:92799763-92799782 | MsG0780041591.01.T01:intron | 25.0% |
| !! | TCTATCTTATTTCAAGAACA+AGG | - | Chr7:92800191-92800210 | None:intergenic | 25.0% |
| !!! | TAACATTGATTTTAAAAGGG+TGG | + | Chr7:92800032-92800051 | MsG0780041591.01.T01:CDS | 25.0% |
| AAATGTTACCTCTTGAAAGA+GGG | - | Chr7:92799705-92799724 | None:intergenic | 30.0% | |
| AGAGAAGCTTCTTAATCAAT+TGG | + | Chr7:92799900-92799919 | MsG0780041591.01.T01:CDS | 30.0% | |
| CTTATTTCAAGAACAAGGAA+AGG | - | Chr7:92800186-92800205 | None:intergenic | 30.0% | |
| GTTATTGGAAAATACAGCAT+TGG | + | Chr7:92800313-92800332 | MsG0780041591.01.T01:intron | 30.0% | |
| TAAATGTTACCTCTTGAAAG+AGG | - | Chr7:92799706-92799725 | None:intergenic | 30.0% | |
| ! | TGTGGTGATATCTTTGAAAA+GGG | + | Chr7:92799781-92799800 | MsG0780041591.01.T01:intron | 30.0% |
| ! | TTGTGGTGATATCTTTGAAA+AGG | + | Chr7:92799780-92799799 | MsG0780041591.01.T01:intron | 30.0% |
| GAGAACAACAATGTATAGTG+TGG | + | Chr7:92799643-92799662 | MsG0780041591.01.T01:intron | 35.0% | |
| GCTGGTTAAATTGATCATCT+AGG | - | Chr7:92799810-92799829 | None:intergenic | 35.0% | |
| TGATAAGGTCGTTGAGTTAT+TGG | + | Chr7:92800298-92800317 | MsG0780041591.01.T01:intron | 35.0% | |
| TTCTAATTAATCCCAAGCAG+AGG | + | Chr7:92800000-92800019 | MsG0780041591.01.T01:intron | 35.0% | |
| TTGATGTGATTAAGTCAACG+AGG | - | Chr7:92800129-92800148 | None:intergenic | 35.0% | |
| TTGCCTTCAAAAATACTGTG+AGG | + | Chr7:92800362-92800381 | MsG0780041591.01.T01:CDS | 35.0% | |
| ! | TCAGTGCTACTCAATATCTT+AGG | - | Chr7:92799618-92799637 | None:intergenic | 35.0% |
| !! | TCTCCTCACAGTATTTTTGA+AGG | - | Chr7:92800368-92800387 | None:intergenic | 35.0% |
| ACCACTTCAACAACAAAGTC+AGG | - | Chr7:92799859-92799878 | None:intergenic | 40.0% | |
| CAATTCTTCCCTCTTTCAAG+AGG | + | Chr7:92799694-92799713 | MsG0780041591.01.T01:CDS | 40.0% | |
| CATCTTGAAGTAGTTGAAGC+TGG | - | Chr7:92799828-92799847 | None:intergenic | 40.0% | |
| CCACTTCAACAACAAAGTCA+GGG | - | Chr7:92799858-92799877 | None:intergenic | 40.0% | |
| TGTGATTAAGTCAACGAGGT+CGG | - | Chr7:92800125-92800144 | None:intergenic | 40.0% | |
| ! | GTGCTACTCAATATCTTAGG+AGG | - | Chr7:92799615-92799634 | None:intergenic | 40.0% |
| AGTGGTCACTCTCTTCTTTG+AGG | + | Chr7:92799873-92799892 | MsG0780041591.01.T01:CDS | 45.0% | |
| ! | TATTTTCCTGGCCTCTGCTT+GGG | - | Chr7:92800014-92800033 | None:intergenic | 45.0% |
| ! | TTATTTTCCTGGCCTCTGCT+TGG | - | Chr7:92800015-92800034 | None:intergenic | 45.0% |
| !! | CCCTGACTTTGTTGTTGAAG+TGG | + | Chr7:92799855-92799874 | MsG0780041591.01.T01:CDS | 45.0% |
| ATTAATCCCAAGCAGAGGCC+AGG | + | Chr7:92800005-92800024 | MsG0780041591.01.T01:intron | 50.0% | |
| GCTCTTGTTCACCAGCTGAA+AGG | + | Chr7:92800057-92800076 | MsG0780041591.01.T01:CDS | 50.0% | |
| GGCTCAGTTGCAAAGACAGT+TGG | + | Chr7:92799664-92799683 | MsG0780041591.01.T01:CDS | 50.0% | |
| AGCTGAAAGGCAGCAGCTCC+AGG | + | Chr7:92800070-92800089 | MsG0780041591.01.T01:CDS | 60.0% | |
| TGGAGCTGCTGCCTTTCAGC+TGG | - | Chr7:92800071-92800090 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 92799611 | 92800396 | 92799611 | ID=MsG0780041591.01;Name=MsG0780041591.01 |
| Chr7 | mRNA | 92799611 | 92800396 | 92799611 | ID=MsG0780041591.01.T01;Parent=MsG0780041591.01;Name=MsG0780041591.01.T01;_AED=0.41;_eAED=0.41;_QI=42|1|1|1|0|0|6|0|110 |
| Chr7 | exon | 92800020 | 92800091 | 92800020 | ID=MsG0780041591.01.T01:exon:21991;Parent=MsG0780041591.01.T01 |
| Chr7 | exon | 92800330 | 92800396 | 92800330 | ID=MsG0780041591.01.T01:exon:21992;Parent=MsG0780041591.01.T01 |
| Chr7 | five_prime_UTR | 92799611 | 92799652 | 92799611 | ID=MsG0780041591.01.T01:five_prime_utr;Parent=MsG0780041591.01.T01 |
| Chr7 | CDS | 92799653 | 92799715 | 92799653 | ID=MsG0780041591.01.T01:cds;Parent=MsG0780041591.01.T01 |
| Chr7 | CDS | 92799802 | 92799932 | 92799802 | ID=MsG0780041591.01.T01:cds;Parent=MsG0780041591.01.T01 |
| Chr7 | CDS | 92800020 | 92800091 | 92800020 | ID=MsG0780041591.01.T01:cds;Parent=MsG0780041591.01.T01 |
| Chr7 | CDS | 92800330 | 92800396 | 92800330 | ID=MsG0780041591.01.T01:cds;Parent=MsG0780041591.01.T01 |
| Chr7 | mRNA | 92799611 | 92800095 | 92799611 | ID=MsG0780041591.01.T02;Parent=MsG0780041591.01;Name=MsG0780041591.01.T02;_AED=0.46;_eAED=0.46;_QI=42|1|0.66|1|0|0|3|0|89 |
| Chr7 | exon | 92800020 | 92800095 | 92800020 | ID=MsG0780041591.01.T02:exon:21993;Parent=MsG0780041591.01.T02 |
| Chr7 | five_prime_UTR | 92799611 | 92799652 | 92799611 | ID=MsG0780041591.01.T02:five_prime_utr;Parent=MsG0780041591.01.T02 |
| Chr7 | CDS | 92799653 | 92799715 | 92799653 | ID=MsG0780041591.01.T02:cds;Parent=MsG0780041591.01.T02 |
| Chr7 | CDS | 92799802 | 92799932 | 92799802 | ID=MsG0780041591.01.T02:cds;Parent=MsG0780041591.01.T02 |
| Chr7 | CDS | 92800020 | 92800095 | 92800020 | ID=MsG0780041591.01.T02:cds;Parent=MsG0780041591.01.T02 |
| Chr7 | mRNA | 92799812 | 92800009 | 92799812 | ID=MsG0780041591.01.T03;Parent=MsG0780041591.01;Name=MsG0780041591.01.T03;_AED=0.47;_eAED=0.47;_QI=0|-1|0|1|-1|0|1|0|65 |
| Chr7 | exon | 92799812 | 92800009 | 92799812 | ID=MsG0780041591.01.T03:exon:21994;Parent=MsG0780041591.01.T03 |
| Chr7 | CDS | 92799812 | 92800009 | 92799812 | ID=MsG0780041591.01.T03:cds;Parent=MsG0780041591.01.T03 |
| Gene Sequence |
| Protein sequence |
