AlfalfaGEDB | MsG0280007101.01

M. sativa cultivar ZhongmuNo.1 / MsG0280007101.01

KEGG: K14490
GO: GO:0000160 GO:0004871
PFAM: PF01627

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007101.01.T01	RZB63908.1	60.804	199	51	2	1	172	1	199	2.47E-67	214

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007101.01.T01	Q9ZNV9	75.532	94	23	0	84	177	60	153	3.25E-46	151

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007101.01.T01	A0A445GRN7	60.804	199	51	2	1	172	1	199	1.18e-67	214

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000334.01	MsG0280007101.01	0.810314	1.226004e-50	7.365881e-48
MsG0180000806.01	MsG0280007101.01	0.807012	6.221597e-50	3.427141e-47
MsG0180001687.01	MsG0280007101.01	0.801463	8.898439e-49	4.252193e-46
MsG0180003548.01	MsG0280007101.01	0.801129	1.041620e-48	4.935952e-46
MsG0180003864.01	MsG0280007101.01	0.812734	3.652703e-51	2.340635e-48
MsG0180004050.01	MsG0280007101.01	0.818521	1.876971e-52	1.408237e-49
MsG0180004148.01	MsG0280007101.01	0.841602	4.302032e-58	6.353989e-55
MsG0180004259.01	MsG0280007101.01	0.857965	1.139315e-62	2.862160e-59
MsG0180004389.01	MsG0280007101.01	0.834998	2.166717e-56	2.614844e-53
MsG0180004996.01	MsG0280007101.01	0.807780	4.275455e-50	2.402669e-47
MsG0180005575.01	MsG0280007101.01	0.809402	1.926287e-50	1.129920e-47
MsG0180005954.01	MsG0280007101.01	0.849239	3.673230e-60	6.920204e-57
MsG0280006299.01	MsG0280007101.01	0.813956	1.968931e-51	1.303930e-48
MsG0280006483.01	MsG0280007101.01	0.803837	2.880901e-49	1.462690e-46
MsG0280007101.01	MsG0280007153.01	0.811574	6.539231e-51	4.062418e-48
MsG0280007101.01	MsG0280007321.01	0.870043	1.965722e-66	7.538851e-63
MsG0280007101.01	MsG0280010389.01	0.815792	7.710462e-52	5.368112e-49
MsG0280007101.01	MsG0280011086.01	0.805240	1.468618e-49	7.730218e-47
MsG0280007101.01	MsG0280011093.01	0.804560	2.037276e-49	1.053714e-46
MsG0280007101.01	MsG0280011388.01	0.821185	4.618713e-53	3.731404e-50
MsG0280007101.01	MsG0380012471.01	0.801838	7.454565e-49	3.596317e-46
MsG0280007101.01	MsG0380014365.01	0.802599	5.197290e-49	2.556361e-46
MsG0280007101.01	MsG0380015564.01	0.819537	1.102294e-52	8.506405e-50
MsG0280007101.01	MsG0380016604.01	0.816036	6.800838e-52	4.766443e-49
MsG0280007101.01	MsG0480018894.01	0.831587	1.534294e-55	1.672474e-52
MsG0280007101.01	MsG0480021453.01	0.807376	5.209629e-50	2.897000e-47
MsG0280007101.01	MsG0480021464.01	0.841393	4.883733e-58	7.166253e-55
MsG0280007101.01	MsG0480022614.01	0.804734	1.874259e-49	9.738523e-47
MsG0280007101.01	MsG0480022696.01	0.824208	9.144113e-54	8.046333e-51
MsG0280007101.01	MsG0480022790.01	0.806943	6.435101e-50	3.538358e-47
MsG0280007101.01	MsG0480022855.01	0.814595	1.421949e-51	9.581784e-49
MsG0280007101.01	MsG0580024185.01	0.802710	4.930732e-49	2.432148e-46
MsG0280007101.01	MsG0580024339.01	0.803301	3.722222e-49	1.863832e-46
MsG0280007101.01	MsG0580024727.01	0.816550	5.219642e-52	3.709714e-49
MsG0280007101.01	MsG0580024981.01	0.844154	9.009522e-59	1.441673e-55
MsG0280007101.01	MsG0580026059.01	0.815594	8.533778e-52	5.909005e-49
MsG0280007101.01	MsG0580027031.01	0.802717	4.913058e-49	2.423914e-46
MsG0280007101.01	MsG0580027431.01	0.806787	6.941779e-50	3.801635e-47
MsG0280007101.01	MsG0580029729.01	0.807684	4.481290e-50	2.511997e-47
MsG0280007101.01	MsG0680030459.01	0.811782	5.894229e-51	3.681781e-48
MsG0280007101.01	MsG0680031549.01	0.833704	4.577308e-56	5.312988e-53
MsG0280007101.01	MsG0680035475.01	0.800687	1.282134e-48	6.007686e-46
MsG0280007101.01	MsG0680035876.01	0.820241	7.608878e-53	5.987705e-50
MsG0280007101.01	MsG0680035888.01	0.818725	1.687214e-52	1.272958e-49
MsG0280007101.01	MsG0780035979.01	0.801112	1.049694e-48	4.972073e-46
MsG0280007101.01	MsG0780036340.01	0.815952	7.102316e-52	4.965997e-49
MsG0280007101.01	MsG0780036815.01	0.809434	1.896307e-50	1.113252e-47
MsG0280007101.01	MsG0780037141.01	0.811586	6.501735e-51	4.040254e-48
MsG0280007101.01	MsG0780038603.01	0.806579	7.681665e-50	4.184326e-47
MsG0280007101.01	MsG0780040162.01	0.868231	7.616399e-66	2.734807e-62
MsG0280007101.01	MsG0780040344.01	0.808016	3.809536e-50	2.154111e-47
MsG0280007101.01	MsG0780041392.01	0.831004	2.134561e-55	2.286761e-52
MsG0280007101.01	MsG0780041796.01	0.816340	5.817325e-52	4.111179e-49
MsG0280007101.01	MsG0880042779.01	0.848204	7.113867e-60	1.295506e-56
MsG0280007101.01	MsG0880043477.01	0.802914	4.474864e-49	2.218773e-46
MsG0280007101.01	MsG0880044782.01	0.802865	4.579991e-49	2.268075e-46
MsG0280007101.01	MsG0880045118.01	0.813486	2.498432e-51	1.633774e-48
MsG0280007101.01	MsG0880045736.01	0.800639	1.311280e-48	6.136938e-46
MsG0280007101.01	MsG0880045965.01	0.844290	8.287411e-59	1.331706e-55

PPI

Gene1	Gene2	Type
MsG0280007101.01	MsG0480018340.01	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007101.01.T01	MTR_2g020770	67.797	177	33	4	1	177	1	153	3.31e-70	209
MsG0280007101.01.T01	MTR_2g020770	60.976	164	40	4	1	164	1	140	1.54e-54	169
MsG0280007101.01.T01	MTR_7g114020	63.855	83	30	0	90	172	64	146	3.87e-35	120
MsG0280007101.01.T01	MTR_1g082290	58.974	78	32	0	90	167	67	144	1.35e-31	111
MsG0280007101.01.T01	MTR_1g089130	61.446	83	32	0	89	171	63	145	7.96e-31	109
MsG0280007101.01.T01	MTR_2g103870	46.988	83	43	1	94	175	74	156	3.02e-19	80.1
MsG0280007101.01.T01	MTR_4g010160	45.349	86	46	1	89	173	57	142	9.13e-18	75.9
MsG0280007101.01.T01	MTR_2g100880	42.667	75	43	0	89	163	65	139	4.59e-17	74.3
MsG0280007101.01.T01	MTR_2g100900	42.667	75	43	0	89	163	65	139	8.66e-17	73.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007101.01.T01	AT3G21510	75.532	94	23	0	84	177	60	153	3.31e-47	151
MsG0280007101.01.T01	AT1G03430	54.444	90	41	0	88	177	68	157	1.68e-30	109
MsG0280007101.01.T01	AT3G29350	52.326	86	41	0	92	177	71	156	2.26e-27	101
MsG0280007101.01.T01	AT5G39340	55.294	85	38	0	92	176	71	155	1.82e-26	99.0
MsG0280007101.01.T01	AT5G39340	55.294	85	38	0	92	176	104	188	3.16e-26	99.0
MsG0280007101.01.T01	AT5G39340	55.294	85	38	0	92	176	120	204	4.39e-26	99.4
MsG0280007101.01.T01	AT5G39340	55.294	85	38	0	92	176	120	204	4.39e-26	99.4
MsG0280007101.01.T01	AT1G03430	53.425	73	34	0	88	160	68	140	2.14e-21	85.9
MsG0280007101.01.T01	AT1G80100	48.837	86	43	1	89	173	47	132	4.32e-20	81.6
MsG0280007101.01.T01	AT1G80100	48.837	86	43	1	89	173	69	154	7.52e-20	81.6
MsG0280007101.01.T01	AT3G16360	45.833	72	39	0	92	163	63	134	1.20e-17	75.9
MsG0280007101.01.T01	AT3G16360	45.070	71	39	0	92	162	57	127	2.96e-17	74.3
MsG0280007101.01.T01	AT1G80100	44.444	72	40	0	89	160	69	140	1.66e-14	67.8

Find 47 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAATATTTGGCCAGATTC+TGG	0.210683	2:+10640200	None:intergenic
TGCACATGTTCACCAGTTTA+AGG	0.220882	2:-10641309	MsG0280007101.01.T01:CDS
TTACTACAACTACTTCCTTT+TGG	0.278143	2:+10640340	None:intergenic
CTACGCCTCTTGTGAATGTT+TGG	0.304090	2:-10640499	MsG0280007101.01.T01:three_prime_UTR
ACTCAGTTCAGTTCCATCAT+AGG	0.355461	2:+10640584	None:intergenic
GTGTTGAGAAAAGGGTTTCT+TGG	0.384266	2:-10641778	MsG0280007101.01.T01:CDS
AGTTCTGGTAATCCGGAGTT+TGG	0.395859	2:-10640223	MsG0280007101.01.T01:three_prime_UTR
GAAAATAAGTTCTGGTAATC+CGG	0.396551	2:-10640230	MsG0280007101.01.T01:three_prime_UTR
TCCGGAGTTTGGCCAGAATC+TGG	0.400410	2:-10640212	MsG0280007101.01.T01:three_prime_UTR
CAAAGAGGCAAGATCAATAT+TGG	0.419521	2:+10640372	None:intergenic
GCTGCTGAAGTTGCAGAAAC+TGG	0.419928	2:+10641751	None:intergenic
CAAACACTTGGATTCATCAT+AGG	0.423961	2:-10640299	MsG0280007101.01.T01:three_prime_UTR
TTGCACTGCTACCCTTAAAC+TGG	0.425560	2:+10641297	None:intergenic
GCACATGTTCACCAGTTTAA+GGG	0.428803	2:-10641308	MsG0280007101.01.T01:CDS
ATGATGAATCCAAGTGTTTG+AGG	0.448221	2:+10640302	None:intergenic
CTACATCAAATCCATGTTCA+TGG	0.459422	2:-10641929	MsG0280007101.01.T01:CDS
CTAATTTATGCAGGTGCCGC+AGG	0.459692	2:-10640801	MsG0280007101.01.T01:intron
GCAGCTTGAGCAGCAGATAG+TGG	0.473916	2:-10640624	MsG0280007101.01.T01:intron
CTCAGTTCAGTTCCATCATA+GGG	0.476361	2:+10640585	None:intergenic
TTCCCGACGAAAATAAGTTC+TGG	0.482048	2:-10640238	MsG0280007101.01.T01:three_prime_UTR
ATCATTTCAAGAAAGTCTAT+AGG	0.487374	2:+10640149	None:intergenic
TGAGAAAAGGGTTTCTTGGA+TGG	0.497354	2:-10641774	MsG0280007101.01.T01:CDS
GCCAGATTCTGGCCAAACTC+CGG	0.498103	2:+10640211	None:intergenic
GGGTCAGATGCGGAGACAGT+GGG	0.506261	2:-10641956	MsG0280007101.01.T01:CDS
TTTAGCAAAAGAATCATACT+TGG	0.508350	2:-10640178	MsG0280007101.01.T01:three_prime_UTR
TCTTGTGAACCTCAAACACT+TGG	0.519875	2:-10640311	MsG0280007101.01.T01:three_prime_UTR
TAAGCTTGAAACATTGTTGA+GGG	0.522076	2:-10640737	MsG0280007101.01.T01:intron
TGACAGCATAGGTGCACAAA+GGG	0.524943	2:-10641050	MsG0280007101.01.T01:intron
TGTTCTAACCTCCATGAACA+TGG	0.533151	2:+10641918	None:intergenic
GAGCAGCAGATAGTGGCAGC+TGG	0.537850	2:-10640617	MsG0280007101.01.T01:CDS
TCTTTGTCACTCTCCCCAAA+AGG	0.541572	2:-10640355	MsG0280007101.01.T01:three_prime_UTR
TGGTGGCTCAATCCCTATGA+TGG	0.558041	2:-10640597	MsG0280007101.01.T01:CDS
TTTGTAGAGAAACATGGAGG+TGG	0.564605	2:-10641977	None:intergenic
TTGTGAAGAACAAAGTACAT+TGG	0.567324	2:+10640450	None:intergenic
ATAAGCTTGAAACATTGTTG+AGG	0.584829	2:-10640738	MsG0280007101.01.T01:CDS
AAAATCCAAACATTCACAAG+AGG	0.592112	2:+10640494	None:intergenic
TGGGTCAGATGCGGAGACAG+TGG	0.592973	2:-10641957	MsG0280007101.01.T01:CDS
TCAGATGCGGAGACAGTGGG+TGG	0.608143	2:-10641953	MsG0280007101.01.T01:CDS
TTGTAGAGAAACATGGAGGT+GGG	0.611758	2:-10641976	None:intergenic
AGTTTAAGGGTAGCAGTGCA+AGG	0.619461	2:-10641295	MsG0280007101.01.T01:intron
TCACTTGCTGCAAACACCTG+CGG	0.622315	2:+10640785	None:intergenic
GAACTGAGTCTCTAAGTGAG+TGG	0.628098	2:-10640570	MsG0280007101.01.T01:exon
CAGCAGATAGTGGCAGCTGG+TGG	0.634128	2:-10640614	MsG0280007101.01.T01:CDS
GAAATTGCGAAAAGCAACGC+AGG	0.637314	2:+10641018	None:intergenic
ACATGGAGGTGGGTCAGATG+CGG	0.639294	2:-10641966	MsG0280007101.01.T01:CDS
TTGACAGCATAGGTGCACAA+AGG	0.666337	2:-10641051	MsG0280007101.01.T01:intron
CATCAAATCCATGTTCATGG+AGG	0.716249	2:-10641926	MsG0280007101.01.T01:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AATTTATATGATTTCTTTTA+TGG	-	Chr2:10641453-10641472	MsG0280007101.01.T01:intron	10.0%
!!	AAATCCATAAGTTTAATATA+AGG	+	Chr2:10641431-10641450	None:intergenic	15.0%
!!	ATTAGAGAATATAATGAATT+TGG	-	Chr2:10640528-10640547	MsG0280007101.01.T01:three_prime_UTR	15.0%
!!!	ACTATGCTATTATATTATTT+TGG	-	Chr2:10641008-10641027	MsG0280007101.01.T01:CDS	15.0%
!!	AAATAGTCTGTTATGAAATT+CGG	+	Chr2:10640968-10640987	None:intergenic	20.0%
!!	AGAACCTTATATTAAACTTA+TGG	-	Chr2:10641424-10641443	MsG0280007101.01.T01:intron	20.0%
!!!	CTGTAGCATTTATAAATTTT+AGG	+	Chr2:10640862-10640881	None:intergenic	20.0%
!!!	TATTTTGCATGTTTTAATGA+AGG	-	Chr2:10641705-10641724	MsG0280007101.01.T01:CDS	20.0%
!!!	TCTTTTGCTAAAACAATATT+TGG	+	Chr2:10641923-10641942	None:intergenic	20.0%
!!!	TTTTCAATTGTTGATTTTGT+TGG	-	Chr2:10640287-10640306	MsG0280007101.01.T01:three_prime_UTR	20.0%
!!!	TTTTGCTTTTGTTTTTGTTT+AGG	-	Chr2:10640254-10640273	MsG0280007101.01.T01:three_prime_UTR	20.0%
!	AACATGAGAGAAATGAAAAA+AGG	+	Chr2:10640504-10640523	None:intergenic	25.0%
!	ACAACTTCAAAAACAAATTC+AGG	+	Chr2:10640401-10640420	None:intergenic	25.0%
!	AGTAAAGTATAACCAAGAAT+TGG	+	Chr2:10640622-10640641	None:intergenic	25.0%
!	ATCATTTCAAGAAAGTCTAT+AGG	+	Chr2:10641963-10641982	None:intergenic	25.0%
!	CAACTTCAAAAACAAATTCA+GGG	+	Chr2:10640400-10640419	None:intergenic	25.0%
!	GTGAAATTTCTAATTTATGC+AGG	-	Chr2:10641299-10641318	MsG0280007101.01.T01:CDS	25.0%
!	TTTAGCAAAAGAATCATACT+TGG	-	Chr2:10641931-10641950	MsG0280007101.01.T01:CDS	25.0%
!!	AGCATTTATAAATTTTAGGC+TGG	+	Chr2:10640858-10640877	None:intergenic	25.0%
!!	CATGATCTTTAATGTTGTTT+GGG	-	Chr2:10640730-10640749	MsG0280007101.01.T01:intron	25.0%
!!	TGAATGTTTGGATTTTTATG+TGG	-	Chr2:10641622-10641641	MsG0280007101.01.T01:intron	25.0%
!!	TGAATTTTTCGCTAATTTCA+TGG	-	Chr2:10641267-10641286	MsG0280007101.01.T01:intron	25.0%
!!!	GACTAGTTGTTTAATAGTTT+TGG	-	Chr2:10641155-10641174	MsG0280007101.01.T01:intron	25.0%
!!!	TTTTGTTTGTGTTGAGAAAA+GGG	-	Chr2:10640323-10640342	MsG0280007101.01.T01:three_prime_UTR	25.0%
!!!	TTTTTTTGCTATTAATGACC+CGG	+	Chr2:10640690-10640709	None:intergenic	25.0%
	AAAATCCAAACATTCACAAG+AGG	+	Chr2:10641618-10641637	None:intergenic	30.0%
	ATAAGCTTGAAACATTGTTG+AGG	-	Chr2:10641371-10641390	MsG0280007101.01.T01:intron	30.0%
	GCATGATCTTTAATGTTGTT+TGG	-	Chr2:10640729-10640748	MsG0280007101.01.T01:intron	30.0%
	GCTACAGAATCTGAATAAAT+GGG	-	Chr2:10640875-10640894	MsG0280007101.01.T01:intron	30.0%
	TAAGCTTGAAACATTGTTGA+GGG	-	Chr2:10641372-10641391	MsG0280007101.01.T01:intron	30.0%
	TGCTACAGAATCTGAATAAA+TGG	-	Chr2:10640874-10640893	MsG0280007101.01.T01:intron	30.0%
	TTGTGAAGAACAAAGTACAT+TGG	+	Chr2:10641662-10641681	None:intergenic	30.0%
!	ACACATTAATTGACTCTTCT+GGG	-	Chr2:10640220-10640239	MsG0280007101.01.T01:three_prime_UTR	30.0%
!	GAAAATAAGTTCTGGTAATC+CGG	-	Chr2:10641879-10641898	MsG0280007101.01.T01:intron	30.0%
!	TACTACAACTACTTCCTTTT+GGG	+	Chr2:10641771-10641790	None:intergenic	30.0%
!	TTACTACAACTACTTCCTTT+TGG	+	Chr2:10641772-10641791	None:intergenic	30.0%
!!	TTACCAGAACTTATTTTCGT+CGG	+	Chr2:10641877-10641896	None:intergenic	30.0%
!!	TTTTCTTTGATGATTCTGAG+AGG	-	Chr2:10640426-10640445	MsG0280007101.01.T01:three_prime_UTR	30.0%
!!!	GTTTTGTTTGTGTTGAGAAA+AGG	-	Chr2:10640322-10640341	MsG0280007101.01.T01:three_prime_UTR	30.0%
	AACAATATTTGGCCAGATTC+TGG	+	Chr2:10641912-10641931	None:intergenic	35.0%
	AATAGCTACACAAGAATTGC+AGG	+	Chr2:10640917-10640936	None:intergenic	35.0%
	ATGATGAATCCAAGTGTTTG+AGG	+	Chr2:10641810-10641829	None:intergenic	35.0%
	CAAACACTTGGATTCATCAT+AGG	-	Chr2:10641810-10641829	MsG0280007101.01.T01:CDS	35.0%
	CAAAGAGGCAAGATCAATAT+TGG	+	Chr2:10641740-10641759	None:intergenic	35.0%
	CTACATCAAATCCATGTTCA+TGG	-	Chr2:10640180-10640199	MsG0280007101.01.T01:three_prime_UTR	35.0%
	GTATGTTTGATTGACAGCAT+AGG	-	Chr2:10641048-10641067	MsG0280007101.01.T01:intron	35.0%
!	ACTACAACTACTTCCTTTTG+GGG	+	Chr2:10641770-10641789	None:intergenic	35.0%
!	CACACATTAATTGACTCTTC+TGG	-	Chr2:10640219-10640238	MsG0280007101.01.T01:three_prime_UTR	35.0%
!!	TACCAGAACTTATTTTCGTC+GGG	+	Chr2:10641876-10641895	None:intergenic	35.0%
	ACTCAGTTCAGTTCCATCAT+AGG	+	Chr2:10641528-10641547	None:intergenic	40.0%
	CAGCTAGTGCAATAGTTTGA+AGG	-	Chr2:10641194-10641213	MsG0280007101.01.T01:intron	40.0%
	CATCAAATCCATGTTCATGG+AGG	-	Chr2:10640183-10640202	MsG0280007101.01.T01:three_prime_UTR	40.0%
	CATTGTTGAGGGTGAGTAAA+TGG	-	Chr2:10641383-10641402	MsG0280007101.01.T01:intron	40.0%
	CTCAGTTCAGTTCCATCATA+GGG	+	Chr2:10641527-10641546	None:intergenic	40.0%
	CTTAACTGCTTAGATGCTAG+AGG	-	Chr2:10641236-10641255	MsG0280007101.01.T01:intron	40.0%
	GCACATGTTCACCAGTTTAA+GGG	-	Chr2:10640801-10640820	MsG0280007101.01.T01:intron	40.0%
	GTGTTGAGAAAAGGGTTTCT+TGG	-	Chr2:10640331-10640350	MsG0280007101.01.T01:three_prime_UTR	40.0%
	TATTAATGACCCGGTTCCTA+GGG	+	Chr2:10640681-10640700	None:intergenic	40.0%
	TCTTGTGAACCTCAAACACT+TGG	-	Chr2:10641798-10641817	MsG0280007101.01.T01:CDS	40.0%
	TGAGAAAAGGGTTTCTTGGA+TGG	-	Chr2:10640335-10640354	MsG0280007101.01.T01:three_prime_UTR	40.0%
	TGCACATGTTCACCAGTTTA+AGG	-	Chr2:10640800-10640819	MsG0280007101.01.T01:intron	40.0%
	TGTTCTAACCTCCATGAACA+TGG	+	Chr2:10640194-10640213	None:intergenic	40.0%
	TTCCCGACGAAAATAAGTTC+TGG	-	Chr2:10641871-10641890	MsG0280007101.01.T01:intron	40.0%
!!	GTTTGGGTTTTACATGTGCA+GGG	-	Chr2:10640746-10640765	MsG0280007101.01.T01:CDS	40.0%
!!	TGTTTGGGTTTTACATGTGC+AGG	-	Chr2:10640745-10640764	MsG0280007101.01.T01:CDS	40.0%
	AGTTTAAGGGTAGCAGTGCA+AGG	-	Chr2:10640814-10640833	MsG0280007101.01.T01:intron	45.0%
	CTACGCCTCTTGTGAATGTT+TGG	-	Chr2:10641610-10641629	MsG0280007101.01.T01:intron	45.0%
	CTATTAATGACCCGGTTCCT+AGG	+	Chr2:10640682-10640701	None:intergenic	45.0%
	CTTACCTCTCGAGTGAACTT+CGG	-	Chr2:10640640-10640659	MsG0280007101.01.T01:intron	45.0%
	GAAATTGCGAAAAGCAACGC+AGG	+	Chr2:10641094-10641113	None:intergenic	45.0%
	GAACTGAGTCTCTAAGTGAG+TGG	-	Chr2:10641539-10641558	MsG0280007101.01.T01:intron	45.0%
	TAATCCGAAGTTCACTCGAG+AGG	+	Chr2:10640647-10640666	None:intergenic	45.0%
	TCTTTGTCACTCTCCCCAAA+AGG	-	Chr2:10641754-10641773	MsG0280007101.01.T01:CDS	45.0%
	TGACAGCATAGGTGCACAAA+GGG	-	Chr2:10641059-10641078	MsG0280007101.01.T01:intron	45.0%
	TTGACAGCATAGGTGCACAA+AGG	-	Chr2:10641058-10641077	MsG0280007101.01.T01:intron	45.0%
	TTGCACTGCTACCCTTAAAC+TGG	+	Chr2:10640815-10640834	None:intergenic	45.0%
!	AGTTCTGGTAATCCGGAGTT+TGG	-	Chr2:10641886-10641905	MsG0280007101.01.T01:intron	45.0%
!!	TTTTGGGGAGAGTGACAAAG+AGG	+	Chr2:10641755-10641774	None:intergenic	45.0%
	AACCAAGAATTGGTCCACCG+AGG	+	Chr2:10640612-10640631	None:intergenic	50.0%
	ATCCTCGGTGGACCAATTCT+TGG	-	Chr2:10640607-10640626	MsG0280007101.01.T01:CDS	50.0%
	CCGAGGATAGTTCTCCTGAA+CGG	+	Chr2:10640595-10640614	None:intergenic	50.0%
	CCGTTCAGGAGAACTATCCT+CGG	-	Chr2:10640592-10640611	MsG0280007101.01.T01:CDS	50.0%
	CGAGTGAACTTCGGATTACC+AGG	-	Chr2:10640649-10640668	MsG0280007101.01.T01:intron	50.0%
	GCTGCTGAAGTTGCAGAAAC+TGG	+	Chr2:10640361-10640380	None:intergenic	50.0%
	TCTCCTGAACGGTTCGTTCT+AGG	+	Chr2:10640584-10640603	None:intergenic	50.0%
	TGGTGGCTCAATCCCTATGA+TGG	-	Chr2:10641512-10641531	MsG0280007101.01.T01:intron	50.0%
	TTCAGGAGAACTATCCTCGG+TGG	-	Chr2:10640595-10640614	MsG0280007101.01.T01:CDS	50.0%
!	CTAATTTATGCAGGTGCCGC+AGG	-	Chr2:10641308-10641327	MsG0280007101.01.T01:CDS	50.0%
!	TCACTTGCTGCAAACACCTG+CGG	+	Chr2:10641327-10641346	None:intergenic	50.0%
	AATGACCCGGTTCCTAGGGA+AGG	+	Chr2:10640677-10640696	None:intergenic	55.0%
	ATGACCCGGTTCCTAGGGAA+GGG	+	Chr2:10640676-10640695	None:intergenic	55.0%
	CCACCTAGAACGAACCGTTC+AGG	-	Chr2:10640578-10640597	MsG0280007101.01.T01:exon	55.0%
	GCAGCTTGAGCAGCAGATAG+TGG	-	Chr2:10641485-10641504	MsG0280007101.01.T01:intron	55.0%
	GCCAGATTCTGGCCAAACTC+CGG	+	Chr2:10641901-10641920	None:intergenic	55.0%
	TCCGGAGTTTGGCCAGAATC+TGG	-	Chr2:10641897-10641916	MsG0280007101.01.T01:intron	55.0%
!	CCTGAACGGTTCGTTCTAGG+TGG	+	Chr2:10640581-10640600	None:intergenic	55.0%
	GATTACCAGGCCCCTTCCCT+AGG	-	Chr2:10640662-10640681	MsG0280007101.01.T01:intron	60.0%
	GGGTCAGATGCGGAGACAGT+GGG	-	Chr2:10640153-10640172	MsG0280007101.01.T01:three_prime_UTR	60.0%
	TCAGATGCGGAGACAGTGGG+TGG	-	Chr2:10640156-10640175	MsG0280007101.01.T01:three_prime_UTR	60.0%
	TGACCCGGTTCCTAGGGAAG+GGG	+	Chr2:10640675-10640694	None:intergenic	60.0%
	TGGGTCAGATGCGGAGACAG+TGG	-	Chr2:10640152-10640171	MsG0280007101.01.T01:three_prime_UTR	60.0%
!	CAGCAGATAGTGGCAGCTGG+TGG	-	Chr2:10641495-10641514	MsG0280007101.01.T01:intron	60.0%
!	GAGCAGCAGATAGTGGCAGC+TGG	-	Chr2:10641492-10641511	MsG0280007101.01.T01:intron	60.0%
	AGGCCCCTTCCCTAGGAACC+GGG	-	Chr2:10640669-10640688	MsG0280007101.01.T01:intron	65.0%
	CAGGCCCCTTCCCTAGGAAC+CGG	-	Chr2:10640668-10640687	MsG0280007101.01.T01:intron	65.0%
	CGGTTCCTAGGGAAGGGGCC+TGG	+	Chr2:10640670-10640689	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	10640145	10641986	10640145	ID=MsG0280007101.01;Name=MsG0280007101.01
Chr2	mRNA	10640145	10641986	10640145	ID=MsG0280007101.01.T01;Parent=MsG0280007101.01;Name=MsG0280007101.01.T01;_AED=0.49;_eAED=0.57;_QI=0\|0.66\|0.85\|1\|0.5\|0.71\|7\|441\|177
Chr2	exon	10640145	10640642	10640145	ID=MsG0280007101.01.T01:exon:3418;Parent=MsG0280007101.01.T01
Chr2	exon	10640738	10640810	10640738	ID=MsG0280007101.01.T01:exon:3417;Parent=MsG0280007101.01.T01
Chr2	exon	10640995	10641066	10640995	ID=MsG0280007101.01.T01:exon:3416;Parent=MsG0280007101.01.T01
Chr2	exon	10641296	10641364	10641296	ID=MsG0280007101.01.T01:exon:3415;Parent=MsG0280007101.01.T01
Chr2	exon	10641653	10641855	10641653	ID=MsG0280007101.01.T01:exon:3414;Parent=MsG0280007101.01.T01
Chr2	exon	10641927	10641986	10641927	ID=MsG0280007101.01.T01:exon:3413;Parent=MsG0280007101.01.T01
Chr2	CDS	10641927	10641986	10641927	ID=MsG0280007101.01.T01:cds;Parent=MsG0280007101.01.T01
Chr2	CDS	10641653	10641855	10641653	ID=MsG0280007101.01.T01:cds;Parent=MsG0280007101.01.T01
Chr2	CDS	10641296	10641364	10641296	ID=MsG0280007101.01.T01:cds;Parent=MsG0280007101.01.T01
Chr2	CDS	10640995	10641066	10640995	ID=MsG0280007101.01.T01:cds;Parent=MsG0280007101.01.T01
Chr2	CDS	10640738	10640810	10640738	ID=MsG0280007101.01.T01:cds;Parent=MsG0280007101.01.T01
Chr2	CDS	10640586	10640642	10640586	ID=MsG0280007101.01.T01:cds;Parent=MsG0280007101.01.T01
Chr2	three_prime_UTR	10640145	10640585	10640145	ID=MsG0280007101.01.T01:three_prime_utr;Parent=MsG0280007101.01.T01

Gene Sequence

>MsG0280007101.01.T01

ATGGAGGTGGGTCAGATGCGGAGACAGTGGGTGGACTACATCAAATCCATGTTCATGGAGGATGTTTTGTTTTTTCAATTGTTGATTTTGTTGGTCTTTTTTTCTTGTTTTGTTTGTGTTGAGAAAAGGGTTTCTTGGATGGCCAGTTTCTGCAACTTCAGCAGCTACAAGATGAGAATAACCCTGAATTTGTTTTTGAAGTTGTTTCTCTTTTCTTTGATGATTCTGAGAGGATTCTCAAAGATCTGTCTTTTGCTGTGTGAGGATCAGCAAAGTGTTGACTTCAAAAAAGTTGATGCACATGTTCACCAGTTTAAGGGTAGCAGTGCAAGCATAGGTGCACAAAGGGTGAAAAATTCCTGCGTTGCTTTTCGCAATTTCTGTGAAGAACAAAACATAGATGCGTGCCGCAGGTGTTTGCAGCAAGTGAAGCAAGAGTACTTACTTGTCAAGAATAAGCTTGAAACATTGTTGAGGCTTGAGCAGCAGATAGTGGCAGCTGGTGGCTCAATCCCTATGATGGAACTGAACTGA

Protein sequence

>MsG0280007101.01.T01

MEVGQMRRQWVDYIKSMFMEDVLFFQLLILLVFFSCFVCVEKRVSWMASFCNFSSYKMRITLNLFLKLFLFSLMILRGFSKICLLLCEDQQSVDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKLETLLRLEQQIVAAGGSIPMMELN*