AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011086.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011086.01.T01 MTR_2g098440 99.643 280 1 0 1 280 990 1269 0.0 594
MsG0280011086.01.T01 MTR_3g054400 94.286 280 16 0 1 280 787 1066 0.0 561
MsG0280011086.01.T01 MTR_3g055020 95.918 98 4 0 1 98 164 261 9.35e-63 204
MsG0280011086.01.T01 MTR_1g023985 42.793 222 123 2 1 222 985 1202 1.35e-62 213
MsG0280011086.01.T01 MTR_1g114490 41.441 222 126 2 1 222 916 1133 4.91e-61 209
MsG0280011086.01.T01 MTR_1543s0010 94.505 91 5 0 1 91 188 278 3.38e-59 191
MsG0280011086.01.T01 MTR_3g023880 40.476 210 121 3 1 208 827 1034 9.82e-55 191
MsG0280011086.01.T01 MTR_6g061840 39.048 210 124 3 1 208 672 879 4.50e-52 182
MsG0280011086.01.T01 MTR_5g075310 39.535 215 124 4 1 212 584 795 1.91e-50 177
MsG0280011086.01.T01 MTR_3g054420 69.672 122 26 2 13 133 1 112 3.35e-50 167
MsG0280011086.01.T01 MTR_1g086640 34.764 233 140 4 1 224 485 714 3.58e-45 162
MsG0280011086.01.T01 MTR_2g015320 33.803 213 136 2 1 210 488 698 2.10e-42 154
MsG0280011086.01.T01 MTR_4g485610 33.047 233 144 4 1 224 447 676 2.68e-42 154
MsG0280011086.01.T01 MTR_3g052610 33.810 210 127 4 1 203 508 712 9.72e-39 144
MsG0280011086.01.T01 MTR_4g094992 31.982 222 133 3 1 207 300 518 3.61e-38 140
MsG0280011086.01.T01 MTR_7g095080 31.982 222 133 3 1 207 506 724 8.47e-38 141
MsG0280011086.01.T01 MTR_8g041990 38.462 195 98 5 1 192 428 603 1.10e-35 135
MsG0280011086.01.T01 MTR_8g080240 35.000 220 111 7 1 196 420 631 3.69e-30 119
MsG0280011086.01.T01 MTR_8g080240 35.000 220 111 7 1 196 420 631 5.63e-30 119
MsG0280011086.01.T01 MTR_1g056490 30.918 207 126 6 1 191 711 916 2.11e-21 94.4
MsG0280011086.01.T01 MTR_6g061840 40.217 92 53 2 1 90 672 763 3.36e-18 84.7
MsG0280011086.01.T01 MTR_8g080240 33.987 153 87 4 1 140 420 571 3.62e-18 84.7
MsG0280011086.01.T01 MTR_8g044260 34.286 140 82 3 4 133 737 876 1.71e-16 79.7
MsG0280011086.01.T01 MTR_3g086770 26.230 244 157 8 1 227 684 921 3.96e-16 79.0
MsG0280011086.01.T01 MTR_1g109170 29.496 139 89 4 4 133 816 954 2.17e-15 76.6
MsG0280011086.01.T01 MTR_1g109170 26.244 221 127 9 4 200 816 1024 2.24e-15 76.6
MsG0280011086.01.T01 MTR_8g045110 35.915 142 76 5 4 133 324 462 6.29e-15 75.1
MsG0280011086.01.T01 MTR_8g106630 24.771 218 135 7 4 200 762 971 2.75e-13 70.5
MsG0280011086.01.T01 MTR_0267s0070 26.016 246 146 11 1 222 1338 1571 3.40e-13 70.1
MsG0280011086.01.T01 MTR_3g014030 25.000 248 146 10 1 222 683 916 1.14e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011086.01.T01 AT5G13010 83.214 280 46 1 1 280 977 1255 3.97e-161 480
MsG0280011086.01.T01 AT3G26560 41.892 222 125 2 1 222 930 1147 3.66e-61 209
MsG0280011086.01.T01 AT4G16680 37.008 254 153 4 1 250 546 796 9.70e-54 186
MsG0280011086.01.T01 AT1G32490 37.619 210 127 3 1 208 819 1026 5.51e-52 182
MsG0280011086.01.T01 AT1G32490 37.619 210 127 3 1 208 809 1016 5.56e-52 182
MsG0280011086.01.T01 AT2G35340 36.190 210 130 3 1 208 819 1026 1.34e-51 181
MsG0280011086.01.T01 AT2G35340 36.190 210 130 3 1 208 681 888 1.67e-51 181
MsG0280011086.01.T01 AT2G47250 33.333 234 144 4 1 225 493 723 1.43e-43 157
MsG0280011086.01.T01 AT3G62310 33.607 244 147 5 1 235 489 726 1.60e-43 157
MsG0280011086.01.T01 AT4G18465 34.884 215 136 2 1 213 483 695 3.24e-43 156
MsG0280011086.01.T01 AT5G14900 34.043 235 136 6 1 221 59 288 9.90e-42 145
MsG0280011086.01.T01 AT1G26370 27.928 222 144 3 1 208 498 717 2.65e-32 125
MsG0280011086.01.T01 AT1G27900 28.169 284 159 10 1 248 423 697 1.45e-23 100
MsG0280011086.01.T01 AT2G01130 31.469 143 87 4 1 133 639 780 3.91e-18 84.7
MsG0280011086.01.T01 AT2G01130 30.986 142 89 3 1 133 704 845 5.35e-18 84.3
MsG0280011086.01.T01 AT2G35920 28.502 207 130 7 1 191 709 913 1.62e-17 82.8
MsG0280011086.01.T01 AT2G35920 27.778 216 138 7 1 200 651 864 1.69e-17 82.8
MsG0280011086.01.T01 AT2G35920 28.502 207 130 7 1 191 741 945 1.84e-17 82.8
MsG0280011086.01.T01 AT1G48650 28.372 215 130 8 4 200 787 995 2.73e-16 79.3
MsG0280011086.01.T01 AT1G48650 28.372 215 130 8 4 200 787 995 2.91e-16 79.3
MsG0280011086.01.T01 AT5G04895 32.877 146 88 4 4 139 748 893 7.53e-15 75.1
MsG0280011086.01.T01 AT1G33390 27.807 187 103 3 41 197 895 1079 7.20e-14 72.0
MsG0280011086.01.T01 AT1G33390 27.807 187 103 3 41 197 895 1079 7.20e-14 72.0
MsG0280011086.01.T01 AT5G10370 26.316 247 141 9 1 218 723 957 1.92e-12 67.8
MsG0280011086.01.T01 AT1G27900 27.966 118 74 3 1 110 423 537 2.23e-12 67.4
MsG0280011086.01.T01 AT1G27900 27.966 118 74 3 1 110 423 537 2.33e-12 67.4

Find 68 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCCTCTGCTCGGTCCTT+TGG 0.303595 2:-79372372 None:intergenic
TTTCTAACTACGTCTGTATC+AGG 0.321009 2:-79372603 None:intergenic
CAGCAGCAGATTTCCATTCC+AGG 0.327574 2:+79373017 MsG0280011086.01.T01:CDS
AGAGTTAAATGATCGGATTC+TGG 0.360492 2:-79372423 None:intergenic
GATGACATGGCATCCCATTC+CGG 0.392492 2:-79372692 None:intergenic
ATCAGGAAAGCACGTTGTTA+AGG 0.395899 2:-79372586 None:intergenic
AACGGCCATGGAGGAGGAAA+TGG 0.398391 2:+79372920 MsG0280011086.01.T01:CDS
GAAACAGAAACGAGAGAAAA+CGG 0.412041 2:+79372902 MsG0280011086.01.T01:CDS
ATGACATGGCATCCCATTCC+GGG 0.417059 2:-79372691 None:intergenic
TCGTGATAAACCACATAATC+AGG 0.418416 2:-79372753 None:intergenic
GTCCAAGCTCAGCCATCCAC+TGG 0.421334 2:-79372827 None:intergenic
CACAATTCAGCAAGACTAAA+GGG 0.427814 2:+79372648 MsG0280011086.01.T01:CDS
TTCACCCATCAAAAGCATCT+TGG 0.436821 2:-79372280 None:intergenic
CAGCAAGACTAAAGGGTGTC+GGG 0.437366 2:+79372655 MsG0280011086.01.T01:CDS
CCCCAGTGGATGGCTGAGCT+TGG 0.438475 2:+79372825 MsG0280011086.01.T01:CDS
CACCCCAGTAGTGCTCTCTA+TGG 0.446378 2:+79372717 MsG0280011086.01.T01:CDS
TCCAAGCTCAGCCATCCACT+GGG 0.450606 2:-79372826 None:intergenic
TCAGGAAAGCACGTTGTTAA+GGG 0.456921 2:-79372585 None:intergenic
GGAAATCTGCTGCTGACTCT+TGG 0.459825 2:-79373009 None:intergenic
AGTTAGAGAGAGAAAATAAA+CGG 0.466140 2:+79372967 MsG0280011086.01.T01:CDS
AGAAAATAAACGGAAGGAGA+AGG 0.468868 2:+79372977 MsG0280011086.01.T01:CDS
CAGTAGTGCTCTCTATGGCA+TGG 0.475345 2:+79372722 MsG0280011086.01.T01:CDS
TCTTGAGAATATCAAGCAGC+TGG 0.476588 2:-79372551 None:intergenic
GGGTTGCACTCCTGATTATG+TGG 0.477387 2:+79372743 MsG0280011086.01.T01:CDS
CAGCATCACTCTCCTCTGCT+CGG 0.477584 2:-79372380 None:intergenic
GCATGTTAAAGGTCTAAGAA+AGG 0.481224 2:+79372512 MsG0280011086.01.T01:CDS
CCACAATTCAGCAAGACTAA+AGG 0.484623 2:+79372647 MsG0280011086.01.T01:CDS
GGAGTCTGATACATCACTAC+TGG 0.488773 2:+79372869 MsG0280011086.01.T01:CDS
CCTTTAGTCTTGCTGAATTG+TGG 0.499965 2:-79372647 None:intergenic
GGCACATTGCATGTACTCCT+TGG 0.501847 2:-79372790 None:intergenic
AGAGAAAACGGCCATGGAGG+AGG 0.504464 2:+79372914 MsG0280011086.01.T01:CDS
GAGTATGTTAACACCCGGAA+TGG 0.506647 2:+79372678 MsG0280011086.01.T01:CDS
CATGCCATAGAGAGCACTAC+TGG 0.515495 2:-79372721 None:intergenic
GGAAATGGAGAATTTAAAGA+AGG 0.516513 2:+79372935 MsG0280011086.01.T01:CDS
AGTAGTGCTCTCTATGGCAT+GGG 0.517604 2:+79372723 MsG0280011086.01.T01:CDS
GAAAATGGTTGAGTTTCCAC+TGG 0.518935 2:+79372245 None:intergenic
ATTCTCCATTTCCTCCTCCA+TGG 0.519332 2:-79372925 None:intergenic
AACAGATGGTACTGAAAGCA+TGG 0.522201 2:-79372340 None:intergenic
AGTATGTTAACACCCGGAAT+GGG 0.523996 2:+79372679 MsG0280011086.01.T01:CDS
AGCGGTAGAGCCCCAGTGGA+TGG 0.533007 2:+79372815 MsG0280011086.01.T01:CDS
AGAGAGAGAAAATAAACGGA+AGG 0.545920 2:+79372971 MsG0280011086.01.T01:CDS
AACACGATTACAGAGGTGAT+TGG 0.558769 2:+79372472 MsG0280011086.01.T01:CDS
AGGTCTAAGAAAGGCTAGAG+AGG 0.563322 2:+79372521 MsG0280011086.01.T01:CDS
ACATTGCATGTACTCCTTGG+TGG 0.566562 2:-79372787 None:intergenic
TTTACAATGTCTATCAGCAA+TGG 0.567080 2:+79372445 MsG0280011086.01.T01:CDS
TCAGCAAGACTAAAGGGTGT+CGG 0.567989 2:+79372654 MsG0280011086.01.T01:CDS
ATCAAAAGCATCTTGGCAAG+TGG 0.575430 2:-79372273 None:intergenic
ATGCCATAGAGAGCACTACT+GGG 0.578929 2:-79372720 None:intergenic
GAAACGAGAGAAAACGGCCA+TGG 0.579103 2:+79372908 MsG0280011086.01.T01:CDS
CTACTGGGGTGAAGATGACA+TGG 0.599007 2:-79372705 None:intergenic
ATTGTAAAGAGTTAAATGAT+CGG 0.600601 2:-79372430 None:intergenic
CTTGAGAATATCAAGCAGCT+GGG 0.608925 2:-79372550 None:intergenic
AAAAGCATCTTGGCAAGTGG+AGG 0.610833 2:-79372270 None:intergenic
TTTGGCCTAAAGAAAACAGA+TGG 0.617145 2:-79372354 None:intergenic
AAAGTTAGGGTGTCTTGAGG+AGG 0.617681 2:+79372302 MsG0280011086.01.T01:CDS
CCACAGCGGTAGAGCCCCAG+TGG 0.619672 2:+79372811 MsG0280011086.01.T01:CDS
TTGGCAAGTGGAGGATCCAG+TGG 0.622583 2:-79372261 None:intergenic
TGAAAAGTTAGGGTGTCTTG+AGG 0.639286 2:+79372299 MsG0280011086.01.T01:CDS
TCGGGGAGTATGTTAACACC+CGG 0.640540 2:+79372673 MsG0280011086.01.T01:CDS
AGCAAGACTAAAGGGTGTCG+GGG 0.641660 2:+79372656 MsG0280011086.01.T01:CDS
CCACTGGGGCTCTACCGCTG+TGG 0.644668 2:-79372811 None:intergenic
ACGAGAGAAAACGGCCATGG+AGG 0.648070 2:+79372911 MsG0280011086.01.T01:CDS
CCAAGCTCAGCCATCCACTG+GGG 0.663464 2:-79372825 None:intergenic
TAGGCCAAAGGACCGAGCAG+AGG 0.666139 2:+79372368 MsG0280011086.01.T01:CDS
TGCCATAGAGAGCACTACTG+GGG 0.698776 2:-79372719 None:intergenic
CGAGTTAATTCTAACCACCA+AGG 0.705824 2:+79372773 MsG0280011086.01.T01:CDS
TGGAAACAACACGATTACAG+AGG 0.731564 2:+79372465 MsG0280011086.01.T01:CDS
GTACATGCAATGTGCCACAG+CGG 0.769611 2:+79372797 MsG0280011086.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGTAAAGAGTTAAATGAT+CGG - Chr2:79372433-79372452 None:intergenic 20.0%
! AGTTAGAGAGAGAAAATAAA+CGG + Chr2:79372967-79372986 MsG0280011086.01.T01:CDS 25.0%
GACCTTTAACATGCAAAAAA+TGG - Chr2:79372506-79372525 None:intergenic 30.0%
GGAAATGGAGAATTTAAAGA+AGG + Chr2:79372935-79372954 MsG0280011086.01.T01:CDS 30.0%
TCCATTCCAGGTTTAAAAAA+GGG + Chr2:79373029-79373048 MsG0280011086.01.T01:CDS 30.0%
TTCCATTCCAGGTTTAAAAA+AGG + Chr2:79373028-79373047 MsG0280011086.01.T01:CDS 30.0%
TTCTTGAGACCAAAAAAGTT+TGG + Chr2:79373062-79373081 MsG0280011086.01.T01:CDS 30.0%
TTTACAATGTCTATCAGCAA+TGG + Chr2:79372445-79372464 MsG0280011086.01.T01:CDS 30.0%
!! TTTTGATGGGTGAAAAGTTA+GGG + Chr2:79372289-79372308 MsG0280011086.01.T01:CDS 30.0%
!!! GACCATTTTTTGCATGTTAA+AGG + Chr2:79372501-79372520 MsG0280011086.01.T01:CDS 30.0%
AGAAAATAAACGGAAGGAGA+AGG + Chr2:79372977-79372996 MsG0280011086.01.T01:CDS 35.0%
AGAGAGAGAAAATAAACGGA+AGG + Chr2:79372971-79372990 MsG0280011086.01.T01:CDS 35.0%
AGAGTTAAATGATCGGATTC+TGG - Chr2:79372426-79372445 None:intergenic 35.0%
CACAATTCAGCAAGACTAAA+GGG + Chr2:79372648-79372667 MsG0280011086.01.T01:CDS 35.0%
GAAACAGAAACGAGAGAAAA+CGG + Chr2:79372902-79372921 MsG0280011086.01.T01:CDS 35.0%
GCATGTTAAAGGTCTAAGAA+AGG + Chr2:79372512-79372531 MsG0280011086.01.T01:CDS 35.0%
TCCTTCACAGAGAAAAACAT+GGG - Chr2:79372852-79372871 None:intergenic 35.0%
TCGTGATAAACCACATAATC+AGG - Chr2:79372756-79372775 None:intergenic 35.0%
TTTCTAACTACGTCTGTATC+AGG - Chr2:79372606-79372625 None:intergenic 35.0%
TTTGGCCTAAAGAAAACAGA+TGG - Chr2:79372357-79372376 None:intergenic 35.0%
! ATCTGTTTTCTTTAGGCCAA+AGG + Chr2:79372356-79372375 MsG0280011086.01.T01:CDS 35.0%
! CAGTACCATCTGTTTTCTTT+AGG + Chr2:79372349-79372368 MsG0280011086.01.T01:CDS 35.0%
!! CTTTTGATGGGTGAAAAGTT+AGG + Chr2:79372288-79372307 MsG0280011086.01.T01:CDS 35.0%
!!! ACCCTTTTTTAAACCTGGAA+TGG - Chr2:79373033-79373052 None:intergenic 35.0%
!!! CTTTTTTGGTCTCAAGAATG+TGG - Chr2:79373060-79373079 None:intergenic 35.0%
!!! GAAGAACCCTTTTTTAAACC+TGG - Chr2:79373038-79373057 None:intergenic 35.0%
AACACGATTACAGAGGTGAT+TGG + Chr2:79372472-79372491 MsG0280011086.01.T01:CDS 40.0%
AACGGAAGGAGAAGGAAAAA+AGG + Chr2:79372985-79373004 MsG0280011086.01.T01:CDS 40.0%
ACGGAAGGAGAAGGAAAAAA+GGG + Chr2:79372986-79373005 MsG0280011086.01.T01:CDS 40.0%
AGTATGTTAACACCCGGAAT+GGG + Chr2:79372679-79372698 MsG0280011086.01.T01:CDS 40.0%
CCACAATTCAGCAAGACTAA+AGG + Chr2:79372647-79372666 MsG0280011086.01.T01:CDS 40.0%
CGAGTTAATTCTAACCACCA+AGG + Chr2:79372773-79372792 MsG0280011086.01.T01:CDS 40.0%
CTCCTTCACAGAGAAAAACA+TGG - Chr2:79372853-79372872 None:intergenic 40.0%
CTTGAGAATATCAAGCAGCT+GGG - Chr2:79372553-79372572 None:intergenic 40.0%
TCTTGAGAATATCAAGCAGC+TGG - Chr2:79372554-79372573 None:intergenic 40.0%
TGGAAACAACACGATTACAG+AGG + Chr2:79372465-79372484 MsG0280011086.01.T01:CDS 40.0%
! AACAGATGGTACTGAAAGCA+TGG - Chr2:79372343-79372362 None:intergenic 40.0%
! ACCCATGTTTTTCTCTGTGA+AGG + Chr2:79372848-79372867 MsG0280011086.01.T01:CDS 40.0%
! ACTTGCCAAGATGCTTTTGA+TGG + Chr2:79372275-79372294 MsG0280011086.01.T01:CDS 40.0%
! ATCAGGAAAGCACGTTGTTA+AGG - Chr2:79372589-79372608 None:intergenic 40.0%
! CTTGCCAAGATGCTTTTGAT+GGG + Chr2:79372276-79372295 MsG0280011086.01.T01:CDS 40.0%
! TCAGGAAAGCACGTTGTTAA+GGG - Chr2:79372588-79372607 None:intergenic 40.0%
! TGAAAAGTTAGGGTGTCTTG+AGG + Chr2:79372299-79372318 MsG0280011086.01.T01:CDS 40.0%
!! ATCAAAAGCATCTTGGCAAG+TGG - Chr2:79372276-79372295 None:intergenic 40.0%
!! CCTTTAGTCTTGCTGAATTG+TGG - Chr2:79372650-79372669 None:intergenic 40.0%
!! TTCACCCATCAAAAGCATCT+TGG - Chr2:79372283-79372302 None:intergenic 40.0%
ACATTGCATGTACTCCTTGG+TGG - Chr2:79372790-79372809 None:intergenic 45.0%
AGGTCTAAGAAAGGCTAGAG+AGG + Chr2:79372521-79372540 MsG0280011086.01.T01:CDS 45.0%
AGTAGTGCTCTCTATGGCAT+GGG + Chr2:79372723-79372742 MsG0280011086.01.T01:CDS 45.0%
ATTCTCCATTTCCTCCTCCA+TGG - Chr2:79372928-79372947 None:intergenic 45.0%
GAGTATGTTAACACCCGGAA+TGG + Chr2:79372678-79372697 MsG0280011086.01.T01:CDS 45.0%
GGAGTCTGATACATCACTAC+TGG + Chr2:79372869-79372888 MsG0280011086.01.T01:CDS 45.0%
! AAAGTTAGGGTGTCTTGAGG+AGG + Chr2:79372302-79372321 MsG0280011086.01.T01:CDS 45.0%
! TCAGCAAGACTAAAGGGTGT+CGG + Chr2:79372654-79372673 MsG0280011086.01.T01:CDS 45.0%
!! AAAAGCATCTTGGCAAGTGG+AGG - Chr2:79372273-79372292 None:intergenic 45.0%
!! ATGCCATAGAGAGCACTACT+GGG - Chr2:79372723-79372742 None:intergenic 45.0%
ATGACATGGCATCCCATTCC+GGG - Chr2:79372694-79372713 None:intergenic 50.0%
CAGCAGCAGATTTCCATTCC+AGG + Chr2:79373017-79373036 MsG0280011086.01.T01:CDS 50.0%
CAGTAGTGCTCTCTATGGCA+TGG + Chr2:79372722-79372741 MsG0280011086.01.T01:CDS 50.0%
CTACTGGGGTGAAGATGACA+TGG - Chr2:79372708-79372727 None:intergenic 50.0%
GAAACGAGAGAAAACGGCCA+TGG + Chr2:79372908-79372927 MsG0280011086.01.T01:CDS 50.0%
GATGACATGGCATCCCATTC+CGG - Chr2:79372695-79372714 None:intergenic 50.0%
GGCACATTGCATGTACTCCT+TGG - Chr2:79372793-79372812 None:intergenic 50.0%
GGGTTGCACTCCTGATTATG+TGG + Chr2:79372743-79372762 MsG0280011086.01.T01:CDS 50.0%
GTACATGCAATGTGCCACAG+CGG + Chr2:79372797-79372816 MsG0280011086.01.T01:CDS 50.0%
! TCGGGGAGTATGTTAACACC+CGG + Chr2:79372673-79372692 MsG0280011086.01.T01:CDS 50.0%
!! AGCAAGACTAAAGGGTGTCG+GGG + Chr2:79372656-79372675 MsG0280011086.01.T01:CDS 50.0%
!! CAGCAAGACTAAAGGGTGTC+GGG + Chr2:79372655-79372674 MsG0280011086.01.T01:CDS 50.0%
!! CATGCCATAGAGAGCACTAC+TGG - Chr2:79372724-79372743 None:intergenic 50.0%
!! GGAAATCTGCTGCTGACTCT+TGG - Chr2:79373012-79373031 None:intergenic 50.0%
!! TGCCATAGAGAGCACTACTG+GGG - Chr2:79372722-79372741 None:intergenic 50.0%
AACGGCCATGGAGGAGGAAA+TGG + Chr2:79372920-79372939 MsG0280011086.01.T01:CDS 55.0%
ACGAGAGAAAACGGCCATGG+AGG + Chr2:79372911-79372930 MsG0280011086.01.T01:CDS 55.0%
AGAGAAAACGGCCATGGAGG+AGG + Chr2:79372914-79372933 MsG0280011086.01.T01:CDS 55.0%
CACCCCAGTAGTGCTCTCTA+TGG + Chr2:79372717-79372736 MsG0280011086.01.T01:CDS 55.0%
CAGCATCACTCTCCTCTGCT+CGG - Chr2:79372383-79372402 None:intergenic 55.0%
TCCAAGCTCAGCCATCCACT+GGG - Chr2:79372829-79372848 None:intergenic 55.0%
TTGGCAAGTGGAGGATCCAG+TGG - Chr2:79372264-79372283 None:intergenic 55.0%
CCAAGCTCAGCCATCCACTG+GGG - Chr2:79372828-79372847 None:intergenic 60.0%
CTCTCCTCTGCTCGGTCCTT+TGG - Chr2:79372375-79372394 None:intergenic 60.0%
GTCCAAGCTCAGCCATCCAC+TGG - Chr2:79372830-79372849 None:intergenic 60.0%
TAGGCCAAAGGACCGAGCAG+AGG + Chr2:79372368-79372387 MsG0280011086.01.T01:CDS 60.0%
AGCGGTAGAGCCCCAGTGGA+TGG + Chr2:79372815-79372834 MsG0280011086.01.T01:CDS 65.0%
CCCCAGTGGATGGCTGAGCT+TGG + Chr2:79372825-79372844 MsG0280011086.01.T01:CDS 65.0%
CCACAGCGGTAGAGCCCCAG+TGG + Chr2:79372811-79372830 MsG0280011086.01.T01:CDS 70.0%
CCACTGGGGCTCTACCGCTG+TGG - Chr2:79372814-79372833 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 79372249 79373091 79372249 ID=MsG0280011086.01;Name=MsG0280011086.01
Chr2 mRNA 79372249 79373091 79372249 ID=MsG0280011086.01.T01;Parent=MsG0280011086.01;Name=MsG0280011086.01.T01;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|280
Chr2 exon 79372249 79373091 79372249 ID=MsG0280011086.01.T01:exon:9979;Parent=MsG0280011086.01.T01
Chr2 CDS 79372249 79373091 79372249 ID=MsG0280011086.01.T01:cds;Parent=MsG0280011086.01.T01
Gene Sequence

>MsG0280011086.01.T01

ATGGTTGAGTTTCCACTGGATCCTCCACTTGCCAAGATGCTTTTGATGGGTGAAAAGTTAGGGTGTCTTGAGGAGGTTCTGACAATAGTTTCCATGCTTTCAGTACCATCTGTTTTCTTTAGGCCAAAGGACCGAGCAGAGGAGAGTGATGCTGCACGTGAAAGATTTTTTGTGCCAGAATCCGATCATTTAACTCTTTACAATGTCTATCAGCAATGGAAACAACACGATTACAGAGGTGATTGGTGCAATGACCATTTTTTGCATGTTAAAGGTCTAAGAAAGGCTAGAGAGGTTAGATCCCAGCTGCTTGATATTCTCAAGACACTAAAAATTCCCTTAACAACGTGCTTTCCTGATACAGACGTAGTTAGAAAAGCAATCTGTTCTGCGTACTTCCACAATTCAGCAAGACTAAAGGGTGTCGGGGAGTATGTTAACACCCGGAATGGGATGCCATGTCATCTTCACCCCAGTAGTGCTCTCTATGGCATGGGTTGCACTCCTGATTATGTGGTTTATCACGAGTTAATTCTAACCACCAAGGAGTACATGCAATGTGCCACAGCGGTAGAGCCCCAGTGGATGGCTGAGCTTGGACCCATGTTTTTCTCTGTGAAGGAGTCTGATACATCACTACTGGAGCATAAAAAGAAACAGAAACGAGAGAAAACGGCCATGGAGGAGGAAATGGAGAATTTAAAGAAGGAGCAAGCAGAGTTAGAGAGAGAAAATAAACGGAAGGAGAAGGAAAAAAGGGCCAAGAGTCAGCAGCAGATTTCCATTCCAGGTTTAAAAAAGGGTTCTTCCACATTCTTGAGACCAAAAAAGTTTGGTTTGTAA

Protein sequence

>MsG0280011086.01.T01

MVEFPLDPPLAKMLLMGEKLGCLEEVLTIVSMLSVPSVFFRPKDRAEESDAARERFFVPESDHLTLYNVYQQWKQHDYRGDWCNDHFLHVKGLRKAREVRSQLLDILKTLKIPLTTCFPDTDVVRKAICSAYFHNSARLKGVGEYVNTRNGMPCHLHPSSALYGMGCTPDYVVYHELILTTKEYMQCATAVEPQWMAELGPMFFSVKESDTSLLEHKKKQKREKTAMEEEMENLKKEQAELERENKRKEKEKRAKSQQQISIPGLKKGSSTFLRPKKFGL*