AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780037507.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037507.01.T01 MTR_7g033680 99.206 126 0 1 1 126 1 125 7.69e-89 253
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037507.01.T01 AT5G40500 61.905 126 36 4 1 126 1 114 1.84e-47 149
MsG0780037507.01.T01 AT5G40500 60.156 128 44 4 1 126 1 123 1.91e-47 149

Find 24 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAATCTCAATAACTTTATA+TGG 0.248815 7:+27219624 None:intergenic
ACAACGAACGCCAAGAGATT+TGG 0.306930 7:+27219593 None:intergenic
CGTATTTCCCTTTGCGAAGC+TGG 0.348117 7:+27215294 None:intergenic
TGCAAAAGAAAGACACAAAC+AGG 0.354218 7:+27215152 None:intergenic
CAACGAACGCCAAGAGATTT+GGG 0.383259 7:+27219594 None:intergenic
TGTGCAGACTATGTTGTTTG+AGG 0.408379 7:-27219703 MsG0780037507.01.T01:intron
TACTTTACTCTCTTGGAGAA+TGG 0.423250 7:-27219858 None:intergenic
GGAGAGAGTGTTACAATTGA+AGG 0.475543 7:-27215353 MsG0780037507.01.T01:CDS
CTATTTCAGCTGTAACGCTT+CGG 0.481394 7:-27215319 MsG0780037507.01.T01:CDS
TAATCTCAATAACTTTATAT+GGG 0.517341 7:+27219625 None:intergenic
TTCGGTACCAGCTTCGCAAA+GGG 0.521585 7:-27215301 MsG0780037507.01.T01:CDS
ACTCCTCCACCCAAATCTCT+TGG 0.543768 7:-27219603 MsG0780037507.01.T01:CDS
ACGCCAAGAGATTTGGGTGG+AGG 0.555429 7:+27219600 None:intergenic
CTTCGGTACCAGCTTCGCAA+AGG 0.571486 7:-27215302 MsG0780037507.01.T01:CDS
TCTCAATAACTTTATATGGG+TGG 0.572214 7:+27219628 None:intergenic
AAGACCTATGTTCATCATGT+TGG 0.575742 7:+27219823 None:intergenic
ACTCTCTTGGAGAATGGCAA+TGG 0.581852 7:-27219852 None:intergenic
AATACGAACAAAGCGAAAAG+AGG 0.584810 7:-27215277 MsG0780037507.01.T01:CDS
TCGTCCAACATGATGAACAT+AGG 0.595898 7:-27219827 MsG0780037507.01.T01:CDS
TTCATCATACAAGAAGAAGA+AGG 0.597762 7:-27219798 MsG0780037507.01.T01:intron
TTAAAGCAGAACTTGCAATG+TGG 0.668299 7:-27215374 MsG0780037507.01.T01:intron
AGAGACAGAGATAGAGAACG+AGG 0.695663 7:-27219663 MsG0780037507.01.T01:CDS
GCAAAAGAAAGACACAAACA+GGG 0.712555 7:+27215153 None:intergenic
CGAACGCCAAGAGATTTGGG+TGG 0.714062 7:+27219597 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAACAAAAAAAAAC+AGG + Chr7:27217544-27217563 None:intergenic 10.0%
!! AAAATTTAATACTATACATA+TGG - Chr7:27218216-27218235 MsG0780037507.01.T01:intron 10.0%
!!! AATAATATCTTTTTTTTTTG+AGG - Chr7:27217131-27217150 MsG0780037507.01.T01:intron 10.0%
!!! ATAATATCTTTTTTTTTTGA+GGG - Chr7:27217132-27217151 MsG0780037507.01.T01:intron 10.0%
!!! CATTTTAAATTATATCAATA+GGG + Chr7:27216768-27216787 None:intergenic 10.0%
!! AAATTATTTACTAGAGTTTA+AGG - Chr7:27218623-27218642 MsG0780037507.01.T01:intron 15.0%
!! AATAAAGTTGTGTATTATAT+AGG - Chr7:27218987-27219006 MsG0780037507.01.T01:intron 15.0%
!! ATAACATGGTTTATAAAAAA+GGG + Chr7:27217435-27217454 None:intergenic 15.0%
!! ATGTAGTAATTTATAAGAAT+GGG + Chr7:27216193-27216212 None:intergenic 15.0%
!! TAAATAAAAAATGTTATCCA+TGG - Chr7:27218329-27218348 MsG0780037507.01.T01:intron 15.0%
!! TAATCTCAATAACTTTATAT+GGG + Chr7:27215375-27215394 None:intergenic 15.0%
!! TATAACATGGTTTATAAAAA+AGG + Chr7:27217436-27217455 None:intergenic 15.0%
!! TATGTAGTAATTTATAAGAA+TGG + Chr7:27216194-27216213 None:intergenic 15.0%
!!! AATTAGTTTAATAATGAGTA+CGG + Chr7:27218172-27218191 None:intergenic 15.0%
!!! CTATTTAATTAATTGGTTTT+TGG - Chr7:27215244-27215263 MsG0780037507.01.T01:CDS 15.0%
!!! GAATTTTGTTGTTAAATTTT+AGG - Chr7:27218271-27218290 MsG0780037507.01.T01:intron 15.0%
!!! GCATTTTAAATTATATCAAT+AGG + Chr7:27216769-27216788 None:intergenic 15.0%
!!! TTTTTTATAAACCATGTTAT+AGG - Chr7:27217435-27217454 MsG0780037507.01.T01:intron 15.0%
!! AAAAACAAAAAAAAACAGGT+TGG + Chr7:27217540-27217559 None:intergenic 20.0%
!! AAAACAAAAAAAAACAGGTT+GGG + Chr7:27217539-27217558 None:intergenic 20.0%
!! AAATACTAGATAATCAATTC+TGG + Chr7:27216933-27216952 None:intergenic 20.0%
!! AAATATTTCTTTACTGAACA+AGG + Chr7:27219507-27219526 None:intergenic 20.0%
!! AGAACAAAGAAAAAAAGAAA+TGG + Chr7:27219603-27219622 None:intergenic 20.0%
!! ATCTAAATTAGGAATGTAAA+TGG + Chr7:27218490-27218509 None:intergenic 20.0%
!! ATTATTGCTGATAAATTATG+GGG - Chr7:27217246-27217265 MsG0780037507.01.T01:intron 20.0%
!! CAATGAAAATATGATGTAAA+AGG - Chr7:27218910-27218929 MsG0780037507.01.T01:intron 20.0%
!! GATTATTGCTGATAAATTAT+GGG - Chr7:27217245-27217264 MsG0780037507.01.T01:intron 20.0%
!! GTAATCTCAATAACTTTATA+TGG + Chr7:27215376-27215395 None:intergenic 20.0%
!! GTGAAAAAAAGATACTATAA+AGG - Chr7:27218687-27218706 MsG0780037507.01.T01:intron 20.0%
!! TGATTATTGCTGATAAATTA+TGG - Chr7:27217244-27217263 MsG0780037507.01.T01:intron 20.0%
!! TTCAACTTCCTATTATATAT+AGG + Chr7:27215697-27215716 None:intergenic 20.0%
!! TTCAATATATAAGACAAAGT+TGG + Chr7:27215741-27215760 None:intergenic 20.0%
!! TTTGTGGTTTATCATATTAT+AGG + Chr7:27215982-27216001 None:intergenic 20.0%
!!! AATGAAATTCAAGTTCAAAA+TGG + Chr7:27216132-27216151 None:intergenic 20.0%
!!! ACTTATCTTTAAAATGAACA+AGG + Chr7:27216835-27216854 None:intergenic 20.0%
!!! ATTAGTTTAATAATGAGTAC+GGG + Chr7:27218171-27218190 None:intergenic 20.0%
!!! GAGCTGTAATTTATTTATTT+TGG - Chr7:27216625-27216644 MsG0780037507.01.T01:intron 20.0%
!!! TATAGTATCTTTTTTTCACA+AGG + Chr7:27218686-27218705 None:intergenic 20.0%
!!! TGATATGAAAAAAATGCTTT+TGG - Chr7:27217948-27217967 MsG0780037507.01.T01:intron 20.0%
!!! TGATTATCTAGTATTTTGAT+AGG - Chr7:27216937-27216956 MsG0780037507.01.T01:intron 20.0%
!!! TGTTCATTTTAGAAACAAAT+TGG + Chr7:27216728-27216747 None:intergenic 20.0%
!!! TTAAATAAGTTGATCCAAAT+AGG + Chr7:27215477-27215496 None:intergenic 20.0%
!!! TTCTTTTGTCATTTGATTTA+TGG - Chr7:27216275-27216294 MsG0780037507.01.T01:intron 20.0%
!!! TTGAATCTTGTATTATTTTG+TGG - Chr7:27216299-27216318 MsG0780037507.01.T01:intron 20.0%
!!! TTTACATCATATTTTCATTG+AGG + Chr7:27218910-27218929 None:intergenic 20.0%
! AAAAATTGAAGCAAGTCATT+TGG - Chr7:27219399-27219418 MsG0780037507.01.T01:intron 25.0%
! AACCAGATCATATATTATTC+AGG + Chr7:27217302-27217321 None:intergenic 25.0%
! AACCTGAATAATATATGATC+TGG - Chr7:27217297-27217316 MsG0780037507.01.T01:intron 25.0%
! AATACTTCTTACCTATAACA+TGG + Chr7:27217449-27217468 None:intergenic 25.0%
! ATATTAATGTGATGTTGTGA+TGG - Chr7:27218753-27218772 MsG0780037507.01.T01:intron 25.0%
! ATCAAGATGAAATTGTGAAT+CGG + Chr7:27216564-27216583 None:intergenic 25.0%
! CAACACTAATATCATTGATA+TGG - Chr7:27216484-27216503 MsG0780037507.01.T01:intron 25.0%
! CATTACGAAAAAACAAAGAA+CGG + Chr7:27219334-27219353 None:intergenic 25.0%
! CTTTGTCTTATATATTGAAC+CGG - Chr7:27215742-27215761 MsG0780037507.01.T01:intron 25.0%
! GATATCATATTTATCCAACT+GGG - Chr7:27218427-27218446 MsG0780037507.01.T01:intron 25.0%
! GGATTGTTTCAATAATATGT+TGG + Chr7:27217699-27217718 None:intergenic 25.0%
! GTTGCATTTCAATTCAATAT+AGG - Chr7:27216071-27216090 MsG0780037507.01.T01:intron 25.0%
! TAAAATTGACCTTTGCATAA+TGG - Chr7:27218961-27218980 MsG0780037507.01.T01:intron 25.0%
! TAAATTACAGCTCATTGATA+TGG + Chr7:27216618-27216637 None:intergenic 25.0%
! TAGATAATTAAGCACTTAGA+GGG - Chr7:27218027-27218046 MsG0780037507.01.T01:intron 25.0%
! TGTCTAATACATTACTAGAA+TGG - Chr7:27218590-27218609 MsG0780037507.01.T01:intron 25.0%
! TTAAAAACCATGATTCTGTT+TGG - Chr7:27218793-27218812 MsG0780037507.01.T01:intron 25.0%
! TTTATTCATCCATTATGCAA+AGG + Chr7:27218973-27218992 None:intergenic 25.0%
! TTTGTCTTATATATTGAACC+GGG - Chr7:27215743-27215762 MsG0780037507.01.T01:intron 25.0%
!! ACATTATTACTTGAAAGTAC+TGG + Chr7:27217720-27217739 None:intergenic 25.0%
!! ACTAATGATTTGTCAAATTC+AGG + Chr7:27216374-27216393 None:intergenic 25.0%
!! AGAAATGGTATCATTTTACT+TGG + Chr7:27219588-27219607 None:intergenic 25.0%
!! AGTGTCATTAGTTAAAATCA+TGG - Chr7:27216046-27216065 MsG0780037507.01.T01:intron 25.0%
!! ATCCTACATTATGTGTTTTA+AGG + Chr7:27219103-27219122 None:intergenic 25.0%
!! ATTATGCAAAGGTCAATTTT+AGG + Chr7:27218962-27218981 None:intergenic 25.0%
!! CTTCAATTTTTCATCTCATA+TGG + Chr7:27219390-27219409 None:intergenic 25.0%
!! TCATGGTTTTTAAACTTCAA+AGG + Chr7:27218786-27218805 None:intergenic 25.0%
!! TCTTTGACAAAGATTAGTTA+TGG - Chr7:27215926-27215945 MsG0780037507.01.T01:intron 25.0%
!! TGTTGAAAACAAAACAGTTT+TGG - Chr7:27219455-27219474 MsG0780037507.01.T01:intron 25.0%
!!! AAAAAATGCTTTTGGTTCAA+TGG - Chr7:27217956-27217975 MsG0780037507.01.T01:intron 25.0%
!!! ACAGATTTTTAGATATCCAT+GGG + Chr7:27218368-27218387 None:intergenic 25.0%
!!! TAAAGATAAGTTCACTTTTG+AGG - Chr7:27216844-27216863 MsG0780037507.01.T01:intron 25.0%
!!! TGAAAATATTGACTTGCTTT+TGG - Chr7:27218718-27218737 MsG0780037507.01.T01:intron 25.0%
!!! TTTTGTTTTCAACACCATAA+AGG + Chr7:27219449-27219468 None:intergenic 25.0%
AAATCCCACCAATCAATTAT+TGG + Chr7:27215819-27215838 None:intergenic 30.0%
AACATAACAATGCTATAGTG+CGG + Chr7:27216516-27216535 None:intergenic 30.0%
AAGTATTAAAATGCAACCAG+TGG - Chr7:27217643-27217662 MsG0780037507.01.T01:intron 30.0%
AAGTTGACAACAATAGAAAG+TGG + Chr7:27216238-27216257 None:intergenic 30.0%
AATAATTGATTGGTGGGATT+TGG - Chr7:27215818-27215837 MsG0780037507.01.T01:intron 30.0%
ACACCTTTGATCATAAGTAT+CGG + Chr7:27219218-27219237 None:intergenic 30.0%
ACATGGTTTATAAAAAAGGG+AGG + Chr7:27217432-27217451 None:intergenic 30.0%
ACATTATAAGTGAATGCAGA+TGG - Chr7:27219362-27219381 MsG0780037507.01.T01:intron 30.0%
ACTATAGCATTGTTATGTTG+CGG - Chr7:27216517-27216536 MsG0780037507.01.T01:intron 30.0%
AGAATTCAGCATAGAAAAAC+GGG + Chr7:27216168-27216187 None:intergenic 30.0%
AGATAATTAAGCACTTAGAG+GGG - Chr7:27218028-27218047 MsG0780037507.01.T01:intron 30.0%
AGTTGACAACAATAGAAAGT+GGG + Chr7:27216237-27216256 None:intergenic 30.0%
ATATGAGAACATGTGATGAA+AGG - Chr7:27219019-27219038 MsG0780037507.01.T01:intron 30.0%
ATCAAATGCACAAATTGCTT+TGG + Chr7:27217932-27217951 None:intergenic 30.0%
ATCTACCAATAATTGATTGG+TGG - Chr7:27215811-27215830 MsG0780037507.01.T01:intron 30.0%
ATCTCTTGCACATCTAAATT+AGG + Chr7:27218501-27218520 None:intergenic 30.0%
ATCTTAACACACAACTCTAT+AGG - Chr7:27216795-27216814 MsG0780037507.01.T01:intron 30.0%
CAGAATTCAGCATAGAAAAA+CGG + Chr7:27216169-27216188 None:intergenic 30.0%
CATGGATATCTAAAAATCTG+TGG - Chr7:27218367-27218386 MsG0780037507.01.T01:intron 30.0%
CTAGATAATTAAGCACTTAG+AGG - Chr7:27218026-27218045 MsG0780037507.01.T01:intron 30.0%
CTTCTCTTGAAGATTTGAAT+TGG - Chr7:27217190-27217209 MsG0780037507.01.T01:intron 30.0%
GAAAAATGAATGGAATGGAA+TGG + Chr7:27215447-27215466 None:intergenic 30.0%
GACAAAATTTATCCGTGATT+GGG + Chr7:27218084-27218103 None:intergenic 30.0%
GACCTTAAAACACATAATGT+AGG - Chr7:27219098-27219117 MsG0780037507.01.T01:intron 30.0%
GGATATCATATTTATCCAAC+TGG - Chr7:27218426-27218445 MsG0780037507.01.T01:intron 30.0%
GTACAACTTCATAAAAGTCA+GGG - Chr7:27217880-27217899 MsG0780037507.01.T01:intron 30.0%
GTATGCATAATTGAATCATG+AGG + Chr7:27219558-27219577 None:intergenic 30.0%
GTGATCTACCAATAATTGAT+TGG - Chr7:27215808-27215827 MsG0780037507.01.T01:intron 30.0%
GTTTCAATAATATGTTGGCA+AGG + Chr7:27217694-27217713 None:intergenic 30.0%
TATCATACTATCTGTGTCTA+CGG - Chr7:27218460-27218479 MsG0780037507.01.T01:intron 30.0%
TCTACCAATAATTGATTGGT+GGG - Chr7:27215812-27215831 MsG0780037507.01.T01:intron 30.0%
TCTCAATAACTTTATATGGG+TGG + Chr7:27215372-27215391 None:intergenic 30.0%
TGACAAAATTTATCCGTGAT+TGG + Chr7:27218085-27218104 None:intergenic 30.0%
TGTCAAAGAACATGTTAGAT+GGG + Chr7:27215915-27215934 None:intergenic 30.0%
TTAGAAACAAATTGGCTGTA+TGG + Chr7:27216720-27216739 None:intergenic 30.0%
TTAGTTATGGTTAAACAACG+TGG - Chr7:27215939-27215958 MsG0780037507.01.T01:intron 30.0%
TTCATCATACAAGAAGAAGA+AGG - Chr7:27215199-27215218 MsG0780037507.01.T01:exon 30.0%
TTGTCAAAGAACATGTTAGA+TGG + Chr7:27215916-27215935 None:intergenic 30.0%
TTGTCTTATATATTGAACCG+GGG - Chr7:27215744-27215763 MsG0780037507.01.T01:intron 30.0%
TTGTCTTCAATTATATGCCT+AGG + Chr7:27219067-27219086 None:intergenic 30.0%
! ACTAGAGTTTAAGGTAGTTA+TGG - Chr7:27218632-27218651 MsG0780037507.01.T01:intron 30.0%
! ATAAATTTTGTCACAGACAC+GGG - Chr7:27218092-27218111 MsG0780037507.01.T01:intron 30.0%
! ATACCTCCTTTTCAACTATA+AGG + Chr7:27218532-27218551 None:intergenic 30.0%
! ATTTTTCACCACTACCTATT+TGG - Chr7:27215460-27215479 MsG0780037507.01.T01:intron 30.0%
! CTGACTTTTATGAAGTTGTA+CGG + Chr7:27217881-27217900 None:intergenic 30.0%
! GATAAATTTTGTCACAGACA+CGG - Chr7:27218091-27218110 MsG0780037507.01.T01:intron 30.0%
! TTCCTTGAAAAGAATGCTTT+TGG - Chr7:27217758-27217777 MsG0780037507.01.T01:intron 30.0%
!! ATACTAAAAACAGAAGTGTC+AGG + Chr7:27217388-27217407 None:intergenic 30.0%
!! CACAGATTTTTAGATATCCA+TGG + Chr7:27218369-27218388 None:intergenic 30.0%
!!! AAAGAATGCTTTTGGTTCAA+TGG - Chr7:27217766-27217785 MsG0780037507.01.T01:intron 30.0%
!!! AACCAAAAGCATTCTTTTCA+AGG + Chr7:27217763-27217782 None:intergenic 30.0%
!!! CGTTCTTTGTTTTTTCGTAA+TGG - Chr7:27219332-27219351 MsG0780037507.01.T01:intron 30.0%
AAAAAATCCGTACCCAATCA+CGG - Chr7:27218069-27218088 MsG0780037507.01.T01:intron 35.0%
AAAGAAGCCAAACAGAATCA+TGG + Chr7:27218803-27218822 None:intergenic 35.0%
AACCTTGAAGGTTCCTATAA+AGG - Chr7:27217668-27217687 MsG0780037507.01.T01:intron 35.0%
AAGACCTATGTTCATCATGT+TGG + Chr7:27215177-27215196 None:intergenic 35.0%
AAGAGAGAGATTCCATTGTA+GGG + Chr7:27217087-27217106 None:intergenic 35.0%
AAGGTGCAATCATTTCTAAG+AGG - Chr7:27219038-27219057 MsG0780037507.01.T01:intron 35.0%
AATACGAACAAAGCGAAAAG+AGG - Chr7:27219720-27219739 MsG0780037507.01.T01:intron 35.0%
AATGAAGCATAGACACAACA+CGG + Chr7:27215658-27215677 None:intergenic 35.0%
AATTATGGGGTTAGATGCAA+AGG - Chr7:27217259-27217278 MsG0780037507.01.T01:intron 35.0%
AATTTATCCGTGATTGGGTA+CGG + Chr7:27218079-27218098 None:intergenic 35.0%
ACTCATTCCTGTTACCTAAT+AGG + Chr7:27217508-27217527 None:intergenic 35.0%
ATACGGATATGGATAAGACA+CGG - Chr7:27218405-27218424 MsG0780037507.01.T01:intron 35.0%
ATCAGAATATCAGAGACCTA+AGG + Chr7:27217623-27217642 None:intergenic 35.0%
ATCATATTTATCCAACTGGG+CGG - Chr7:27218430-27218449 MsG0780037507.01.T01:intron 35.0%
CCAATCTACTAAGCAGAAAA+GGG + Chr7:27218832-27218851 None:intergenic 35.0%
CGTACAACTTCATAAAAGTC+AGG - Chr7:27217879-27217898 MsG0780037507.01.T01:intron 35.0%
CTCTCTTGGAATACATATCT+AGG - Chr7:27217100-27217119 MsG0780037507.01.T01:intron 35.0%
CTTAGAGGGGATTTAGATTA+TGG - Chr7:27218041-27218060 MsG0780037507.01.T01:intron 35.0%
GCAAAAGAAAGACACAAACA+GGG + Chr7:27219847-27219866 None:intergenic 35.0%
GTGGTGAAAAATGAATGGAA+TGG + Chr7:27215452-27215471 None:intergenic 35.0%
GTGTATGGAGAAAATTCAGT+TGG - Chr7:27215882-27215901 MsG0780037507.01.T01:intron 35.0%
GTTGACAACAATAGAAAGTG+GGG + Chr7:27216236-27216255 None:intergenic 35.0%
TATGGAGAAAATTCAGTTGG+AGG - Chr7:27215885-27215904 MsG0780037507.01.T01:intron 35.0%
TCAGAATATCAGAGACCTAA+GGG + Chr7:27217622-27217641 None:intergenic 35.0%
TCAGTCAGAAACTTCTAACA+TGG + Chr7:27216975-27216994 None:intergenic 35.0%
TCCAATCTACTAAGCAGAAA+AGG + Chr7:27218833-27218852 None:intergenic 35.0%
TCTCGGGTCCTATATATAAT+AGG - Chr7:27215686-27215705 MsG0780037507.01.T01:intron 35.0%
TGATCTCTGACTATTGTGTA+TGG - Chr7:27215867-27215886 MsG0780037507.01.T01:intron 35.0%
TGGAAATTTGTGTATACCCA+TGG - Chr7:27218349-27218368 MsG0780037507.01.T01:intron 35.0%
TGGGTATACACAAATTTCCA+TGG + Chr7:27218349-27218368 None:intergenic 35.0%
TGTCTTATATATTGAACCGG+GGG - Chr7:27215745-27215764 MsG0780037507.01.T01:intron 35.0%
TGTGCACCTTATAGTTGAAA+AGG - Chr7:27218523-27218542 MsG0780037507.01.T01:intron 35.0%
TTAAAGCAGAACTTGCAATG+TGG - Chr7:27219623-27219642 MsG0780037507.01.T01:CDS 35.0%
TTAGAAGTTTCTGACTGAAC+TGG - Chr7:27216977-27216996 MsG0780037507.01.T01:intron 35.0%
TTCTGTTACATACCCTACAA+TGG - Chr7:27217072-27217091 MsG0780037507.01.T01:intron 35.0%
TTGTGAATCGTGGAAAATAG+TGG + Chr7:27216460-27216479 None:intergenic 35.0%
! AAAAAAAAACAGGTTGGGAG+GGG + Chr7:27217534-27217553 None:intergenic 35.0%
! AAGTTGATCCAAATAGGTAG+TGG + Chr7:27215471-27215490 None:intergenic 35.0%
! ACAAAAAAAAACAGGTTGGG+AGG + Chr7:27217536-27217555 None:intergenic 35.0%
! AGATCGCAATCACATTTTTG+TGG + Chr7:27215998-27216017 None:intergenic 35.0%
! AGGTAGTGGTGAAAAATGAA+TGG + Chr7:27215457-27215476 None:intergenic 35.0%
! ATTTTACTTCCCTTCACTAG+CGG + Chr7:27217042-27217061 None:intergenic 35.0%
! CAAAAAAAAACAGGTTGGGA+GGG + Chr7:27217535-27217554 None:intergenic 35.0%
! TAAATTTTGTCACAGACACG+GGG - Chr7:27218093-27218112 MsG0780037507.01.T01:intron 35.0%
! TGCTTCATTTGTTACTCTCT+CGG - Chr7:27215669-27215688 MsG0780037507.01.T01:intron 35.0%
! TGTAATCATAAGTGTCGTGT+CGG + Chr7:27215581-27215600 None:intergenic 35.0%
! TTTTCAACACCATAAAGGCA+AGG + Chr7:27219444-27219463 None:intergenic 35.0%
!!! TGTTTTAAGGTCCAACACAT+GGG + Chr7:27219090-27219109 None:intergenic 35.0%
!!! TTTGCACCAGTGTTACTTTT+TGG - Chr7:27217854-27217873 MsG0780037507.01.T01:intron 35.0%
AAAGTGGGGCTACAATGATT+AGG + Chr7:27216222-27216241 None:intergenic 40.0%
AAATCCGCATCCGTATCTTA+AGG + Chr7:27218125-27218144 None:intergenic 40.0%
AAGATTGAGTGTCAGTGGTT+TGG - Chr7:27218869-27218888 MsG0780037507.01.T01:intron 40.0%
AGATACGGATGCGGATTTAA+TGG - Chr7:27218127-27218146 MsG0780037507.01.T01:intron 40.0%
ATAATGAGTACGGGTATCTG+CGG + Chr7:27218162-27218181 None:intergenic 40.0%
ATTCAGCATAGAAAAACGGG+TGG + Chr7:27216165-27216184 None:intergenic 40.0%
ATTGAAGACAACCCATGTGT+TGG - Chr7:27219076-27219095 MsG0780037507.01.T01:intron 40.0%
CAAGAGAGAGATTCCATTGT+AGG + Chr7:27217088-27217107 None:intergenic 40.0%
CCATAAGAATATATGACCCC+CGG + Chr7:27215764-27215783 None:intergenic 40.0%
CTACAATGGAATCTCTCTCT+TGG - Chr7:27217086-27217105 MsG0780037507.01.T01:intron 40.0%
CTATTTCAGCTGTAACGCTT+CGG - Chr7:27219678-27219697 MsG0780037507.01.T01:CDS 40.0%
CTCACGTGTCAATATAGTGT+CGG + Chr7:27219248-27219267 None:intergenic 40.0%
CTGGACAGTACTAATGTTCA+AGG - Chr7:27216996-27217015 MsG0780037507.01.T01:intron 40.0%
GATACCTTAAGATACGGATG+CGG - Chr7:27218118-27218137 MsG0780037507.01.T01:intron 40.0%
GCACAAACACTCCTTAGATT+AGG - Chr7:27215519-27215538 MsG0780037507.01.T01:intron 40.0%
GCACCTTATAGTTGAAAAGG+AGG - Chr7:27218526-27218545 MsG0780037507.01.T01:intron 40.0%
GGCAAGGAACAAACACAATT+AGG + Chr7:27219428-27219447 None:intergenic 40.0%
GTGTTGTCAATTGTGAATCG+TGG + Chr7:27216470-27216489 None:intergenic 40.0%
GTGTTTGTTCCTTGCCTTTA+TGG - Chr7:27219432-27219451 MsG0780037507.01.T01:intron 40.0%
TAACAGTGACCAATCTCCAT+CGG - Chr7:27217478-27217497 MsG0780037507.01.T01:intron 40.0%
TACGGTCCAAAAAGTAACAC+TGG + Chr7:27217863-27217882 None:intergenic 40.0%
TATGTTGGCAAGGCCTTTAT+AGG + Chr7:27217684-27217703 None:intergenic 40.0%
TCGTCCAACATGATGAACAT+AGG - Chr7:27215170-27215189 MsG0780037507.01.T01:three_prime_UTR 40.0%
TGGAATGGAATGGAAGCTTA+CGG + Chr7:27215437-27215456 None:intergenic 40.0%
TGGACTTGTATAAAGCTCTC+TGG - Chr7:27217976-27217995 MsG0780037507.01.T01:intron 40.0%
TTACCTAATAGGTTCACCGA+TGG + Chr7:27217497-27217516 None:intergenic 40.0%
TTCAGCATAGAAAAACGGGT+GGG + Chr7:27216164-27216183 None:intergenic 40.0%
! AGATTGGATTTTCCTTCTCG+TGG - Chr7:27218845-27218864 MsG0780037507.01.T01:intron 40.0%
! CCCTTTTCTGCTTAGTAGAT+TGG - Chr7:27218829-27218848 MsG0780037507.01.T01:intron 40.0%
! CTTATGATCAAAGGTGTGTC+TGG - Chr7:27219221-27219240 MsG0780037507.01.T01:intron 40.0%
! GATTGGATTTTCCTTCTCGT+GGG - Chr7:27218846-27218865 MsG0780037507.01.T01:intron 40.0%
! GCACCGATACTTATGATCAA+AGG - Chr7:27219212-27219231 MsG0780037507.01.T01:intron 40.0%
! GCTTCATTTGTTACTCTCTC+GGG - Chr7:27215670-27215689 MsG0780037507.01.T01:intron 40.0%
! TGGAGATTGGTCACTGTTAA+CGG + Chr7:27217477-27217496 None:intergenic 40.0%
! TGTGCAGACTATGTTGTTTG+AGG - Chr7:27215294-27215313 MsG0780037507.01.T01:CDS 40.0%
! TTTTTCCATACGCAAGAGCT+AGG - Chr7:27217559-27217578 MsG0780037507.01.T01:intron 40.0%
!! GGAGAGAGTGTTACAATTGA+AGG - Chr7:27219644-27219663 MsG0780037507.01.T01:CDS 40.0%
!! TCATTTCTAAGAGGCATCCT+AGG - Chr7:27219047-27219066 MsG0780037507.01.T01:intron 40.0%
!!! GTGTTTTAAGGTCCAACACA+TGG + Chr7:27219091-27219110 None:intergenic 40.0%
AAAAGTCAGGGAAAGCTCTC+TGG - Chr7:27217892-27217911 MsG0780037507.01.T01:intron 45.0%
AACACTGGTGCAAAAGCAAG+TGG + Chr7:27217848-27217867 None:intergenic 45.0%
AATGGAATGGAAGCTTACGG+GGG + Chr7:27215434-27215453 None:intergenic 45.0%
ACAACGAACGCCAAGAGATT+TGG + Chr7:27215407-27215426 None:intergenic 45.0%
ACCCATACCCACTTGGTTAA+GGG + Chr7:27215846-27215865 None:intergenic 45.0%
ACTCGGACACTTCAAGCAAA+TGG + Chr7:27217599-27217618 None:intergenic 45.0%
AGAGACAGAGATAGAGAACG+AGG - Chr7:27215334-27215353 MsG0780037507.01.T01:CDS 45.0%
ATAGGTTCACCGATGGAGAT+TGG + Chr7:27217490-27217509 None:intergenic 45.0%
ATTTGGACCCCTTAACCAAG+TGG - Chr7:27215835-27215854 MsG0780037507.01.T01:intron 45.0%
CAACGAACGCCAAGAGATTT+GGG + Chr7:27215406-27215425 None:intergenic 45.0%
CATAGACACAACACGGACAT+CGG + Chr7:27215651-27215670 None:intergenic 45.0%
CCGGGGGTCATATATTCTTA+TGG - Chr7:27215761-27215780 MsG0780037507.01.T01:intron 45.0%
CGGTGAACCTATTAGGTAAC+AGG - Chr7:27217498-27217517 MsG0780037507.01.T01:intron 45.0%
GAATGGAATGGAAGCTTACG+GGG + Chr7:27215435-27215454 None:intergenic 45.0%
GGAATGGAATGGAAGCTTAC+GGG + Chr7:27215436-27215455 None:intergenic 45.0%
GGCCTTTATAGGAACCTTCA+AGG + Chr7:27217673-27217692 None:intergenic 45.0%
TAATGAGTACGGGTATCTGC+GGG + Chr7:27218161-27218180 None:intergenic 45.0%
TATCAGAGACCTAAGGGACT+CGG + Chr7:27217616-27217635 None:intergenic 45.0%
TCTCCATCGGTGAACCTATT+AGG - Chr7:27217491-27217510 MsG0780037507.01.T01:intron 45.0%
TTCACTAGCGGCCAAAAGAT+CGG + Chr7:27217030-27217049 None:intergenic 45.0%
TTTGGACCCCTTAACCAAGT+GGG - Chr7:27215836-27215855 MsG0780037507.01.T01:intron 45.0%
! AGATTGGTCACTGTTAACGG+CGG + Chr7:27217474-27217493 None:intergenic 45.0%
! ATCTTTTGGCCGCTAGTGAA+GGG - Chr7:27217030-27217049 MsG0780037507.01.T01:intron 45.0%
! ATTGAGTGTCAGTGGTTTGG+AGG - Chr7:27218872-27218891 MsG0780037507.01.T01:intron 45.0%
! TGATTCCTAGCTCTTGCGTA+TGG + Chr7:27217567-27217586 None:intergenic 45.0%
!!! TTTTTAACTATTTAATTAAT+TGG - Chr7:27215237-27215256 MsG0780037507.01.T01:CDS 5.0%
ACCCCTTAACCAAGTGGGTA+TGG - Chr7:27215841-27215860 MsG0780037507.01.T01:intron 50.0%
ACTCCTCCACCCAAATCTCT+TGG - Chr7:27215394-27215413 MsG0780037507.01.T01:intron 50.0%
ACTGGGGCACACCTAATCTA+AGG + Chr7:27215533-27215552 None:intergenic 50.0%
AGATCAGACCCATACCCACT+TGG + Chr7:27215853-27215872 None:intergenic 50.0%
ATCTGTGGATACCCGCTTAG+CGG - Chr7:27218382-27218401 MsG0780037507.01.T01:intron 50.0%
ATGGAATGGAAGCTTACGGG+GGG + Chr7:27215433-27215452 None:intergenic 50.0%
CAACCAGTGGACAACCTTGA+AGG - Chr7:27217656-27217675 MsG0780037507.01.T01:intron 50.0%
CACTCAATCTTCCCACGAGA+AGG + Chr7:27218860-27218879 None:intergenic 50.0%
CATATCCGTATCCGCTAAGC+GGG + Chr7:27218396-27218415 None:intergenic 50.0%
CCATATCCGTATCCGCTAAG+CGG + Chr7:27218397-27218416 None:intergenic 50.0%
CCCATACCCACTTGGTTAAG+GGG + Chr7:27215845-27215864 None:intergenic 50.0%
CCCCTTAACCAAGTGGGTAT+GGG - Chr7:27215842-27215861 MsG0780037507.01.T01:intron 50.0%
CGTATTTCCCTTTGCGAAGC+TGG + Chr7:27219706-27219725 None:intergenic 50.0%
GAACCTTCAAGGTTGTCCAC+TGG + Chr7:27217662-27217681 None:intergenic 50.0%
GACCCATACCCACTTGGTTA+AGG + Chr7:27215847-27215866 None:intergenic 50.0%
GATATTTGTGTCCGCCCAGT+TGG + Chr7:27218444-27218463 None:intergenic 50.0%
GGGGCGGATACCTTAAGATA+CGG - Chr7:27218112-27218131 MsG0780037507.01.T01:intron 50.0%
GTGGGAAGATTGAGTGTCAG+TGG - Chr7:27218864-27218883 MsG0780037507.01.T01:intron 50.0%
GTGGGGCTACAATGATTAGG+CGG + Chr7:27216219-27216238 None:intergenic 50.0%
TTCGGTACCAGCTTCGCAAA+GGG - Chr7:27219696-27219715 MsG0780037507.01.T01:CDS 50.0%
! AGGCCTCAAAGCCGATCTTT+TGG - Chr7:27217016-27217035 MsG0780037507.01.T01:intron 50.0%
! AGGCTCGATGTTTTGTCGAC+AGG - Chr7:27219740-27219759 MsG0780037507.01.T01:intron 50.0%
! ATTTTGTCACAGACACGGGG+CGG - Chr7:27218096-27218115 MsG0780037507.01.T01:intron 50.0%
! CTCTGGTGCTAGATTCTCGA+AGG - Chr7:27217993-27218012 MsG0780037507.01.T01:intron 50.0%
! GATCTTTTGGCCGCTAGTGA+AGG - Chr7:27217029-27217048 MsG0780037507.01.T01:intron 50.0%
! TTGAAGTGTCCGAGTCCCTT+AGG - Chr7:27217604-27217623 MsG0780037507.01.T01:intron 50.0%
ACGCCAAGAGATTTGGGTGG+AGG + Chr7:27215400-27215419 None:intergenic 55.0%
CGAACGCCAAGAGATTTGGG+TGG + Chr7:27215403-27215422 None:intergenic 55.0%
CTTCGGTACCAGCTTCGCAA+AGG - Chr7:27219695-27219714 MsG0780037507.01.T01:CDS 55.0%
GATTAGGTGTGCCCCAGTGT+CGG - Chr7:27215535-27215554 MsG0780037507.01.T01:intron 55.0%
! CCGCTTAGCGGATACGGATA+TGG - Chr7:27218394-27218413 MsG0780037507.01.T01:intron 55.0%
! CGGCCAAAAGATCGGCTTTG+AGG + Chr7:27217022-27217041 None:intergenic 55.0%
! GGATACCCGCTTAGCGGATA+CGG - Chr7:27218388-27218407 MsG0780037507.01.T01:intron 55.0%
ACCGACGCATGTCCGACACT+GGG + Chr7:27215550-27215569 None:intergenic 60.0%
CACCGACGCATGTCCGACAC+TGG + Chr7:27215551-27215570 None:intergenic 65.0%
CCGACGCATGTCCGACACTG+GGG + Chr7:27215549-27215568 None:intergenic 65.0%
! CCCCAGTGTCGGACATGCGT+CGG - Chr7:27215546-27215565 MsG0780037507.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 27215153 27219866 27215153 ID=MsG0780037507.01;Name=MsG0780037507.01
Chr7 mRNA 27215153 27219866 27215153 ID=MsG0780037507.01.T01;Parent=MsG0780037507.01;Name=MsG0780037507.01.T01;_AED=0.49;_eAED=0.49;_QI=5|1|1|1|0|0|3|55|126
Chr7 exon 27215153 27215390 27215153 ID=MsG0780037507.01.T01:exon:12624;Parent=MsG0780037507.01.T01
Chr7 exon 27219584 27219718 27219584 ID=MsG0780037507.01.T01:exon:12623;Parent=MsG0780037507.01.T01
Chr7 exon 27219799 27219866 27219799 ID=MsG0780037507.01.T01:exon:12622;Parent=MsG0780037507.01.T01
Chr7 five_prime_UTR 27219862 27219866 27219862 ID=MsG0780037507.01.T01:five_prime_utr;Parent=MsG0780037507.01.T01
Chr7 CDS 27219799 27219861 27219799 ID=MsG0780037507.01.T01:cds;Parent=MsG0780037507.01.T01
Chr7 CDS 27219584 27219718 27219584 ID=MsG0780037507.01.T01:cds;Parent=MsG0780037507.01.T01
Chr7 CDS 27215208 27215390 27215208 ID=MsG0780037507.01.T01:cds;Parent=MsG0780037507.01.T01
Chr7 three_prime_UTR 27215153 27215207 27215153 ID=MsG0780037507.01.T01:three_prime_utr;Parent=MsG0780037507.01.T01
Gene Sequence

>MsG0780037507.01.T01

ATGGCAATGGCATCGTCCAACATGATGAACATAGGTCTTGCTTCATCATACAAGAAGAAGAAGACTATGTTGTTTGAGGTATCATGCAGTAGAAAGAGAGACAGAGATAGAGAACGAGGTAGTAACAGTATCCACCCATATAAAGTTATTGAGATTACTCCTCCACCCAAATCTCTTGGCGTTCGTTGTCTTCCCCCCCAGAACTTGCAATGTGGAGAGAGTGTTACAATTGAAGGACAGACTTATACTATTTCAGCTGTAACGCTTCGGTACCAGCTTCGCAAAGGGAAATACGAACAAAGCGAAAAGAGGCTCGATGTTTTGTCGACAGGAAGATACTTAGTAAATTTGTATTTTGAAAATTTATTAGAACAATCTTGA

Protein sequence

>MsG0780037507.01.T01

MAMASSNMMNIGLASSYKKKKTMLFEVSCSRKRDRDRERGSNSIHPYKVIEITPPPKSLGVRCLPPQNLQCGESVTIEGQTYTISAVTLRYQLRKGKYEQSEKRLDVLSTGRYLVNLYFENLLEQS*