AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031826.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031826.01.T01 MTR_6g033510 90.508 295 25 2 1 293 1 294 0.0 522
MsG0680031826.01.T01 MTR_6g033510 90.169 295 25 3 1 293 1 293 0.0 516
MsG0680031826.01.T01 MTR_6g033510 89.492 295 26 3 1 293 1 292 0.0 513
MsG0680031826.01.T01 MTR_6g033510 89.370 254 24 2 1 252 1 253 1.31e-158 443
MsG0680031826.01.T01 MTR_6g033510 92.544 228 17 0 66 293 10 237 8.60e-155 432
MsG0680031826.01.T02 MTR_6g033510 90.508 295 25 2 1 293 1 294 0.0 522
MsG0680031826.01.T02 MTR_6g033510 90.169 295 25 3 1 293 1 293 0.0 516
MsG0680031826.01.T02 MTR_6g033510 89.492 295 26 3 1 293 1 292 0.0 513
MsG0680031826.01.T02 MTR_6g033510 89.370 254 24 2 1 252 1 253 1.31e-158 443
MsG0680031826.01.T02 MTR_6g033510 92.544 228 17 0 66 293 10 237 8.60e-155 432
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031826.01.T01 AT3G26900 54.444 270 102 4 24 293 32 280 6.24e-93 276
MsG0680031826.01.T01 AT3G26900 54.444 270 102 4 24 293 32 280 6.24e-93 276
MsG0680031826.01.T01 AT3G26900 54.444 270 102 4 24 293 32 280 6.24e-93 276
MsG0680031826.01.T01 AT2G21940 35.354 198 127 1 80 276 89 286 4.20e-40 142
MsG0680031826.01.T01 AT2G21940 35.354 198 127 1 80 276 89 286 4.20e-40 142
MsG0680031826.01.T01 AT2G21940 35.354 198 127 1 80 276 89 286 4.20e-40 142
MsG0680031826.01.T01 AT2G21940 35.354 198 127 1 80 276 90 287 4.88e-40 142
MsG0680031826.01.T01 AT4G39540 35.323 201 127 3 80 277 85 285 2.04e-37 135
MsG0680031826.01.T01 AT4G39540 35.323 201 127 3 80 277 85 285 2.04e-37 135
MsG0680031826.01.T01 AT4G39540 33.482 224 135 5 80 292 85 305 1.88e-34 127
MsG0680031826.01.T01 AT2G21940 35.119 168 108 1 80 246 89 256 2.48e-30 115
MsG0680031826.01.T01 AT2G21940 35.119 168 108 1 80 246 89 256 2.48e-30 115
MsG0680031826.01.T01 AT2G21940 35.119 168 108 1 80 246 89 256 2.48e-30 115
MsG0680031826.01.T02 AT3G26900 54.444 270 102 4 24 293 32 280 6.24e-93 276
MsG0680031826.01.T02 AT3G26900 54.444 270 102 4 24 293 32 280 6.24e-93 276
MsG0680031826.01.T02 AT3G26900 54.444 270 102 4 24 293 32 280 6.24e-93 276
MsG0680031826.01.T02 AT2G21940 35.354 198 127 1 80 276 89 286 4.20e-40 142
MsG0680031826.01.T02 AT2G21940 35.354 198 127 1 80 276 89 286 4.20e-40 142
MsG0680031826.01.T02 AT2G21940 35.354 198 127 1 80 276 89 286 4.20e-40 142
MsG0680031826.01.T02 AT2G21940 35.354 198 127 1 80 276 90 287 4.88e-40 142
MsG0680031826.01.T02 AT4G39540 35.323 201 127 3 80 277 85 285 2.04e-37 135
MsG0680031826.01.T02 AT4G39540 35.323 201 127 3 80 277 85 285 2.04e-37 135
MsG0680031826.01.T02 AT4G39540 33.482 224 135 5 80 292 85 305 1.88e-34 127
MsG0680031826.01.T02 AT2G21940 35.119 168 108 1 80 246 89 256 2.48e-30 115
MsG0680031826.01.T02 AT2G21940 35.119 168 108 1 80 246 89 256 2.48e-30 115
MsG0680031826.01.T02 AT2G21940 35.119 168 108 1 80 246 89 256 2.48e-30 115

Find 76 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCATTGACCAAATAAATT+TGG 0.160236 6:+27481232 None:intergenic
TCACCAATGGTTGATTAAAA+TGG 0.201174 6:+27481709 None:intergenic
TAAAACTGTAATAAGTTAAT+TGG 0.211006 6:-27481539 MsG0680031826.01.T01:three_prime_UTR
TTACACTTGATCTTGTTTAT+TGG 0.221256 6:-27481872 MsG0680031826.01.T01:three_prime_UTR
GAACTTATTCGACTTGATTA+TGG 0.232797 6:-27481267 MsG0680031826.01.T01:three_prime_UTR
TCATTGCTGCTTTCAGTTCA+TGG 0.235217 6:-27480962 MsG0680031826.01.T01:three_prime_UTR
CGAAACGAAGGCGGTGAAAA+TGG 0.244249 6:+27480999 None:intergenic
GGCTTTCAGCATACTCCTTC+TGG 0.255733 6:-27481130 MsG0680031826.01.T01:three_prime_UTR
GTTTGCTAAGGATAGGAAAA+AGG 0.289593 6:+27481807 None:intergenic
ATTTGCCGGGTTGGTTAAAA+TGG 0.307457 6:+27481949 None:intergenic
ACAGTTTGTCTAAAATTATA+AGG 0.308605 6:+27481780 None:intergenic
TGAGCAAGAGAACAAGATTC+TGG 0.315100 6:+27481452 None:intergenic
CGGTGAAAATGGAGCTTCTA+TGG 0.323474 6:+27481010 None:intergenic
AAGAAAATGGAAAACAATAT+AGG 0.324813 6:+27481347 None:intergenic
AGAAAGGAAAATGGAAGAAT+TGG 0.335653 6:+27481310 None:intergenic
GACCAAGTGTATGTATAAAA+TGG 0.355742 6:+27480564 None:intergenic
AGAAAATGGAAAACAATATA+GGG 0.367330 6:+27481348 None:intergenic
ATGGCCCAGGTTGGATAAAA+TGG 0.372854 6:+27480715 None:intergenic
GTCCAAATTTATTTGGTCAA+TGG 0.377340 6:-27481234 MsG0680031826.01.T01:three_prime_UTR
GTGACCAGCAGAAAGGAAAA+TGG 0.386632 6:+27481301 None:intergenic
TTCGTAACTGAAGTATTTGC+CGG 0.390215 6:+27481935 None:intergenic
TGTTCAGCTGTTCTGCCAAA+TGG 0.409504 6:-27481389 MsG0680031826.01.T01:three_prime_UTR
TGATCAGGAGAAAACTATAA+AGG 0.417061 6:+27481199 None:intergenic
TGCCATCATCTTCTTTACTC+TGG 0.422125 6:+27481984 None:intergenic
GTAAGTCATTAAACAGTTGA+TGG 0.422310 6:+27480911 None:intergenic
CATTGTTACTAACTGTTGGA+TGG 0.435069 6:-27480888 MsG0680031826.01.T01:three_prime_UTR
GGAAAATTTAAACACAAAGT+TGG 0.443164 6:+27481163 None:intergenic
GTTCATGGTTTCCATCCTCC+AGG 0.450590 6:-27480947 MsG0680031826.01.T01:three_prime_UTR
GAGAAATGTGTTACTGCCTC+GGG 0.450935 6:+27481479 None:intergenic
GGCATCCCAGATAGCTGATC+AGG 0.452918 6:+27481184 None:intergenic
TGCTGAAAGCCTAGCAAAGA+TGG 0.454373 6:+27481142 None:intergenic
TCTGAAATTCATGCAGGTAA+TGG 0.460026 6:+27480688 None:intergenic
TTTCTCCTGATCAGCTATCT+GGG 0.466599 6:-27481189 MsG0680031826.01.T01:three_prime_UTR
TTACCATTGTTACTAACTGT+TGG 0.469103 6:-27480892 MsG0680031826.01.T01:three_prime_UTR
GTTCTGCCAAATGGATCCTC+TGG 0.478039 6:-27481380 MsG0680031826.01.T01:three_prime_UTR
AACTGAAGTATTTGCCGGGT+TGG 0.479658 6:+27481940 None:intergenic
CGAATAAGTTCAGGTTGAAT+CGG 0.480178 6:+27481279 None:intergenic
GTTGCACCAGAGGATCCATT+TGG 0.493280 6:+27481374 None:intergenic
AGAGAAATGTGTTACTGCCT+CGG 0.495824 6:+27481478 None:intergenic
TAATCAAGTCGAATAAGTTC+AGG 0.498434 6:+27481270 None:intergenic
GAGCAAGAGAACAAGATTCT+GGG 0.502706 6:+27481453 None:intergenic
AAATTTATTTGGTCAATGGT+TGG 0.508258 6:-27481230 MsG0680031826.01.T01:three_prime_UTR
TAGAATTCTGAAATTCATGC+AGG 0.510491 6:+27480682 None:intergenic
CTCTTATAATTAGGACCTGA+GGG 0.510923 6:+27481663 None:intergenic
CTCTTCACCAATACTCCCTC+AGG 0.514146 6:-27481678 MsG0680031826.01.T01:three_prime_UTR
ATTAGGACCTGAGGGAGTAT+TGG 0.516384 6:+27481671 None:intergenic
TTATAAGGTTCAGTTTGCTA+AGG 0.533564 6:+27481795 None:intergenic
TGGAGCTTCTATGGAGATCA+CGG 0.543231 6:+27481019 None:intergenic
ACAGTTGATGGTTGAAAACA+AGG 0.544648 6:+27480923 None:intergenic
GTTGCAAATTAACAAAGATA+AGG 0.544670 6:+27481427 None:intergenic
TCGTAACTGAAGTATTTGCC+GGG 0.549036 6:+27481936 None:intergenic
AGGTAATGGAAGCATGGCCC+AGG 0.565756 6:+27480702 None:intergenic
AGGTTCAGTTTGCTAAGGAT+AGG 0.573193 6:+27481800 None:intergenic
CATCCAACAGTTAGTAACAA+TGG 0.575444 6:+27480889 None:intergenic
TATAGGGTTTGTTGCACCAG+AGG 0.576750 6:+27481364 None:intergenic
AAGCAGCAATGACACGGAGA+GGG 0.585712 6:+27480973 None:intergenic
AATGGAAGCATGGCCCAGGT+TGG 0.586297 6:+27480706 None:intergenic
GACCAGAGTAAAGAAGATGA+TGG 0.587138 6:-27481986 MsG0680031826.01.T01:CDS
GAAAACAAGGACCTGGAGGA+TGG 0.587972 6:+27480936 None:intergenic
TCTCTTATAATTAGGACCTG+AGG 0.588714 6:+27481662 None:intergenic
CTCAAATGAGCGAAACCAGA+AGG 0.590265 6:+27481115 None:intergenic
TGTAGCAACTGCAAAAGTTG+AGG 0.595034 6:+27481738 None:intergenic
TGAATCGGTGACCAGCAGAA+AGG 0.599189 6:+27481294 None:intergenic
AACTGAAAGCAGCAATGACA+CGG 0.599211 6:+27480967 None:intergenic
ATTTACATGAACATGAAATG+AGG 0.601842 6:+27481084 None:intergenic
TCATGCAGGTAATGGAAGCA+TGG 0.605625 6:+27480696 None:intergenic
CGGAGAGGGGATCGAAACGA+AGG 0.606419 6:+27480987 None:intergenic
AGCAGCAATGACACGGAGAG+GGG 0.624126 6:+27480974 None:intergenic
AAGAGTAACACCCTCACCAA+TGG 0.626038 6:+27481696 None:intergenic
GATGGTTGAAAACAAGGACC+TGG 0.646797 6:+27480929 None:intergenic
CTTCTTATAATTAGGACCCG+AGG 0.654030 6:-27481495 MsG0680031826.01.T01:three_prime_UTR
AAAGCAGCAATGACACGGAG+AGG 0.669157 6:+27480972 None:intergenic
ACTGCAAAAGTTGAGGAACA+CGG 0.671488 6:+27481745 None:intergenic
AGAGGGGATCGAAACGAAGG+CGG 0.678359 6:+27480990 None:intergenic
GACAAGATTAAAGACGACGA+TGG 0.686801 6:-27480753 MsG0680031826.01.T01:three_prime_UTR
GGTTGAAAACAAGGACCTGG+AGG 0.720205 6:+27480932 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTAATTAATATAAAA+AGG - Chr6:27481304-27481323 MsG0680031826.01.T01:three_prime_UTR 0.0%
!! TAAAACAATTATTTAGTAAA+GGG + Chr6:27483413-27483432 None:intergenic 10.0%
!! TTAAAACAATTATTTAGTAA+AGG + Chr6:27483414-27483433 None:intergenic 10.0%
!!! TAATTTTTCTTCTTATAATT+AGG - Chr6:27484634-27484653 MsG0680031826.01.T01:intron 10.0%
!! ATAATTCATATTTGATGTTA+CGG - Chr6:27480877-27480896 MsG0680031826.01.T01:three_prime_UTR 15.0%
!! ATATAAAAAGGATAAAATTG+AGG - Chr6:27481316-27481335 MsG0680031826.01.T01:three_prime_UTR 15.0%
!! TAAAACTGTAATAAGTTAAT+TGG - Chr6:27484598-27484617 MsG0680031826.01.T01:intron 15.0%
!! TAATAAATATCAACAATTGA+TGG + Chr6:27481826-27481845 None:intergenic 15.0%
!!! TACAATTTTTCACTAATTTA+AGG - Chr6:27484106-27484125 MsG0680031826.01.T01:intron 15.0%
!!! TTGGTATTTTAATTTATTCA+TGG - Chr6:27481756-27481775 MsG0680031826.01.T01:three_prime_UTR 15.0%
!!! TTTACTGAATTTAAGATATT+CGG - Chr6:27480976-27480995 MsG0680031826.01.T01:three_prime_UTR 15.0%
!! AAGAAAATGGAAAACAATAT+AGG + Chr6:27484793-27484812 None:intergenic 20.0%
!! AATAAGCTTAAAATAGCTAA+TGG + Chr6:27482643-27482662 None:intergenic 20.0%
!! AGAAAATGGAAAACAATATA+GGG + Chr6:27484792-27484811 None:intergenic 20.0%
!! ATTCTTACCAATCAAAAATA+TGG + Chr6:27482166-27482185 None:intergenic 20.0%
!! CCAAAAAATCTCTTATAATT+AGG + Chr6:27484486-27484505 None:intergenic 20.0%
!! TAAACAATACTATCATTTGT+TGG - Chr6:27481737-27481756 MsG0680031826.01.T01:three_prime_UTR 20.0%
!! TAAGAACTATTGATAAGAAA+TGG - Chr6:27481693-27481712 MsG0680031826.01.T01:three_prime_UTR 20.0%
!! TATCAAGTTTAGCTAAAAAT+CGG + Chr6:27482389-27482408 None:intergenic 20.0%
!!! AAAAAGAAAGAAGCTATTTT+AGG + Chr6:27483836-27483855 None:intergenic 20.0%
!!! ACAGTTTGTCTAAAATTATA+AGG + Chr6:27484360-27484379 None:intergenic 20.0%
!!! CAAAGTATATAACTTTTTTC+CGG - Chr6:27483775-27483794 MsG0680031826.01.T01:intron 20.0%
!!! CAATTTCCATCAATTTTTTT+AGG - Chr6:27485337-27485356 MsG0680031826.01.T01:intron 20.0%
!!! CCTAATTATAAGAGATTTTT+TGG - Chr6:27484483-27484502 MsG0680031826.01.T01:intron 20.0%
!!! GTCTTTTGTTAGTAATTTTA+TGG + Chr6:27483309-27483328 None:intergenic 20.0%
!!! TTTACCAAGTTTTTCATATT+AGG - Chr6:27483972-27483991 MsG0680031826.01.T01:intron 20.0%
!!! TTTTACATTTTTTACCATGT+AGG - Chr6:27483802-27483821 MsG0680031826.01.T01:intron 20.0%
!!! TTTTTTCGAATAATGATACT+AGG - Chr6:27485502-27485521 MsG0680031826.01.T01:CDS 20.0%
! AAATTTATTTGGTCAATGGT+TGG - Chr6:27484907-27484926 MsG0680031826.01.T01:intron 25.0%
! AACCATTGACCAAATAAATT+TGG + Chr6:27484908-27484927 None:intergenic 25.0%
! AATTGTCTTAGACTTACTTA+GGG - Chr6:27482521-27482540 MsG0680031826.01.T01:intron 25.0%
! ACGTTTAGATTTACTATAAG+TGG + Chr6:27483648-27483667 None:intergenic 25.0%
! AGCAATTATTAGCTATGATT+TGG - Chr6:27483942-27483961 MsG0680031826.01.T01:intron 25.0%
! ATACCTTGATCAAATAAATC+AGG + Chr6:27482245-27482264 None:intergenic 25.0%
! ATAGGAAAAAGGAAATGAAT+GGG + Chr6:27484322-27484341 None:intergenic 25.0%
! ATTTACATGAACATGAAATG+AGG + Chr6:27485056-27485075 None:intergenic 25.0%
! CAAAATTCAACTAATCTGTA+TGG - Chr6:27483070-27483089 MsG0680031826.01.T01:intron 25.0%
! CTATACAATAAGTACAAAGA+CGG - Chr6:27483721-27483740 MsG0680031826.01.T01:intron 25.0%
! CTTATAACATACACAATCAA+TGG - Chr6:27482188-27482207 MsG0680031826.01.T01:intron 25.0%
! GGAAAATTTAAACACAAAGT+TGG + Chr6:27484977-27484996 None:intergenic 25.0%
! GTAAAAAATGTAAAAGAGAC+CGG + Chr6:27483797-27483816 None:intergenic 25.0%
! GTTGCAAATTAACAAAGATA+AGG + Chr6:27484713-27484732 None:intergenic 25.0%
! TAAGTCGTTTATCCAAAATA+GGG - Chr6:27482782-27482801 MsG0680031826.01.T01:intron 25.0%
! TAATTGTCTTAGACTTACTT+AGG - Chr6:27482520-27482539 MsG0680031826.01.T01:intron 25.0%
! TACTTTATTCAGCGATAATT+TGG - Chr6:27482415-27482434 MsG0680031826.01.T01:CDS 25.0%
! TCAACCATAAACTCAAAATT+TGG - Chr6:27481452-27481471 MsG0680031826.01.T01:three_prime_UTR 25.0%
! TTAAGTCGTTTATCCAAAAT+AGG - Chr6:27482781-27482800 MsG0680031826.01.T01:intron 25.0%
! TTCTACATTATCACTTCAAA+AGG + Chr6:27481884-27481903 None:intergenic 25.0%
! TTGAAGTGAAATAATTGCAT+CGG + Chr6:27483758-27483777 None:intergenic 25.0%
!! AGGTTTCATTTTGGATATAA+TGG - Chr6:27482357-27482376 MsG0680031826.01.T01:intron 25.0%
!! AGTTCTTAGTTTAACTTACT+TGG + Chr6:27481681-27481700 None:intergenic 25.0%
!! CAATTTTTCATGAGTATACT+TGG - Chr6:27484558-27484577 MsG0680031826.01.T01:intron 25.0%
!! GTAGTTGGCAATAATAATTT+TGG - Chr6:27480940-27480959 MsG0680031826.01.T01:three_prime_UTR 25.0%
!! TTAAATTTTCCATCTTTGCT+AGG - Chr6:27484986-27485005 MsG0680031826.01.T01:intron 25.0%
!! TTACACTTGATCTTGTTTAT+TGG - Chr6:27484265-27484284 MsG0680031826.01.T01:intron 25.0%
!! TTGTAATTTTGTTCCATTCA+AGG + Chr6:27483186-27483205 None:intergenic 25.0%
!! TTTAACTTACTTGGTCTAAA+GGG + Chr6:27481672-27481691 None:intergenic 25.0%
!! TTTGGTAAAAGGTTTCATTT+TGG - Chr6:27482348-27482367 MsG0680031826.01.T01:intron 25.0%
!!! AATCCATTTTAATCAACCAT+TGG - Chr6:27484425-27484444 MsG0680031826.01.T01:intron 25.0%
!!! ACTTGATTATGGTTTGTTTT+TGG - Chr6:27484881-27484900 MsG0680031826.01.T01:intron 25.0%
!!! AGAAGATTTTAGGAAGAAAA+TGG + Chr6:27484806-27484825 None:intergenic 25.0%
!!! ATCAATTTTTTTAGGCTCTT+GGG - Chr6:27485345-27485364 MsG0680031826.01.T01:intron 25.0%
!!! GTTTTTGGTCCAAATTTATT+TGG - Chr6:27484896-27484915 MsG0680031826.01.T01:intron 25.0%
!!! TGCGATATTATTATTTTGAC+AGG - Chr6:27482312-27482331 MsG0680031826.01.T01:intron 25.0%
!!! TTGGTAGTTTGTTATTTCAA+TGG - Chr6:27480590-27480609 MsG0680031826.01.T01:three_prime_UTR 25.0%
AAAATGATGCTTGTATGGTA+TGG + Chr6:27483999-27484018 None:intergenic 30.0%
AAACTATCTTGGATAGCTTA+TGG + Chr6:27482667-27482686 None:intergenic 30.0%
AACTAAAAAAGACACATTCG+AGG + Chr6:27483247-27483266 None:intergenic 30.0%
AAGCAAAAATGATGCTTGTA+TGG + Chr6:27484004-27484023 None:intergenic 30.0%
AAGTGATTTGAAGAAAGAAG+TGG - Chr6:27480561-27480580 MsG0680031826.01.T02:three_prime_UTR 30.0%
AATTTGAATGGAACAGAGAT+TGG + Chr6:27480729-27480748 None:intergenic 30.0%
ACATGCTCTTAAACTGTTAT+AGG - Chr6:27483450-27483469 MsG0680031826.01.T01:intron 30.0%
ACTCTAGTATAGTAACTCTA+AGG + Chr6:27481631-27481650 None:intergenic 30.0%
AGAAAGGAAAATGGAAGAAT+TGG + Chr6:27484830-27484849 None:intergenic 30.0%
AGTGATTTGAAGAAAGAAGT+GGG - Chr6:27480562-27480581 MsG0680031826.01.T02:three_prime_UTR 30.0%
ATGAAGAAGATGAAGATTGA+AGG + Chr6:27480689-27480708 None:intergenic 30.0%
ATTGATTGTATCATGTGTGT+CGG - Chr6:27481111-27481130 MsG0680031826.01.T01:three_prime_UTR 30.0%
ATTTGAATGGAACAGAGATT+GGG + Chr6:27480728-27480747 None:intergenic 30.0%
CAAGAGCCTAAAAAAATTGA+TGG + Chr6:27485346-27485365 None:intergenic 30.0%
CATGCTCTTAAACTGTTATA+GGG - Chr6:27483451-27483470 MsG0680031826.01.T01:intron 30.0%
CATTAACACAGATCAGAAAT+TGG - Chr6:27481501-27481520 MsG0680031826.01.T01:three_prime_UTR 30.0%
CTACCTGATTTATTTGATCA+AGG - Chr6:27482239-27482258 MsG0680031826.01.T01:CDS 30.0%
CTCGTCTATTTACATTTAGA+GGG + Chr6:27481854-27481873 None:intergenic 30.0%
CTCTAGTATAGTAACTCTAA+GGG + Chr6:27481630-27481649 None:intergenic 30.0%
CTTACCAATCAAAAATATGG+AGG + Chr6:27482163-27482182 None:intergenic 30.0%
CTTTCTTCAAATCACTTATC+CGG + Chr6:27480558-27480577 None:intergenic 30.0%
GACCAAGTGTATGTATAAAA+TGG + Chr6:27485576-27485595 None:intergenic 30.0%
GAGAGTTACATATACATACA+TGG + Chr6:27480804-27480823 None:intergenic 30.0%
GATAGGAAAAAGGAAATGAA+TGG + Chr6:27484323-27484342 None:intergenic 30.0%
GTAAGTCATTAAACAGTTGA+TGG + Chr6:27485229-27485248 None:intergenic 30.0%
GTCCAAATTTATTTGGTCAA+TGG - Chr6:27484903-27484922 MsG0680031826.01.T01:intron 30.0%
GTGTAAATTGATAGAGTAGT+TGG - Chr6:27480925-27480944 MsG0680031826.01.T01:three_prime_UTR 30.0%
GTTCTTCTCACTTAAATTTC+AGG - Chr6:27482899-27482918 MsG0680031826.01.T01:intron 30.0%
TAATCAAGTCGAATAAGTTC+AGG + Chr6:27484870-27484889 None:intergenic 30.0%
TACAGTAAGAAATTACCTCT+GGG + Chr6:27483595-27483614 None:intergenic 30.0%
TACATATACATACATGGAAC+AGG + Chr6:27480798-27480817 None:intergenic 30.0%
TAGGAAAAAGGAAATGAATG+GGG + Chr6:27484321-27484340 None:intergenic 30.0%
TCACCAATGGTTGATTAAAA+TGG + Chr6:27484431-27484450 None:intergenic 30.0%
TCTAGTATAGTAACTCTAAG+GGG + Chr6:27481629-27481648 None:intergenic 30.0%
TCTATTTACATTTAGAGGGT+AGG + Chr6:27481850-27481869 None:intergenic 30.0%
TCTGTTCATTCTTTGGTAAA+AGG - Chr6:27482337-27482356 MsG0680031826.01.T01:intron 30.0%
TGAAGAAGATGAAGATTGAA+GGG + Chr6:27480688-27480707 None:intergenic 30.0%
TGATCAGGAGAAAACTATAA+AGG + Chr6:27484941-27484960 None:intergenic 30.0%
TGGTCCTAATATGAAAAACT+TGG + Chr6:27483979-27483998 None:intergenic 30.0%
TGTTAATTGACATCAGGTAA+TGG - Chr6:27483684-27483703 MsG0680031826.01.T01:CDS 30.0%
TTACAGTAAGAAATTACCTC+TGG + Chr6:27483596-27483615 None:intergenic 30.0%
TTACCATTGTTACTAACTGT+TGG - Chr6:27485245-27485264 MsG0680031826.01.T01:intron 30.0%
TTAGAAGCAATCAGTTATGT+AGG + Chr6:27482863-27482882 None:intergenic 30.0%
TTCAAAAAGACTGAATCTCA+GGG + Chr6:27482065-27482084 None:intergenic 30.0%
TTCACCTCACAATCATAATT+GGG - Chr6:27482000-27482019 MsG0680031826.01.T01:CDS 30.0%
TTTATTCAGCGATAATTTGG+TGG - Chr6:27482418-27482437 MsG0680031826.01.T01:CDS 30.0%
TTTCAAAAAGACTGAATCTC+AGG + Chr6:27482066-27482085 None:intergenic 30.0%
! AAGAATTGGCAGAAGATTTT+AGG + Chr6:27484816-27484835 None:intergenic 30.0%
! CACCATTTTATACATACACT+TGG - Chr6:27485571-27485590 MsG0680031826.01.T01:five_prime_UTR 30.0%
! CATACACAATCAATGGTTTT+CGG - Chr6:27482195-27482214 MsG0680031826.01.T01:intron 30.0%
! GAAAGATCAAACCTTCATTT+TGG - Chr6:27483128-27483147 MsG0680031826.01.T01:CDS 30.0%
! GAACTTATTCGACTTGATTA+TGG - Chr6:27484870-27484889 MsG0680031826.01.T01:intron 30.0%
! GACAAATATCTGTTTGAGAT+AGG - Chr6:27480530-27480549 MsG0680031826.01.T02:three_prime_UTR 30.0%
! GCTGATTTCAAAAACTATCT+TGG + Chr6:27482678-27482697 None:intergenic 30.0%
! GTTACCAAACAAGTCAATTT+TGG - Chr6:27481409-27481428 MsG0680031826.01.T01:three_prime_UTR 30.0%
! GTTTAACTTACTTGGTCTAA+AGG + Chr6:27481673-27481692 None:intergenic 30.0%
! TTATGGACTAAACTGACTAA+GGG + Chr6:27483292-27483311 None:intergenic 30.0%
! TTTATGGACTAAACTGACTA+AGG + Chr6:27483293-27483312 None:intergenic 30.0%
! TTTTAATCAACCATTGGTGA+GGG - Chr6:27484431-27484450 MsG0680031826.01.T01:intron 30.0%
!! ATGACCAAAATTGACTTGTT+TGG + Chr6:27481416-27481435 None:intergenic 30.0%
!! ATTTTAATCAACCATTGGTG+AGG - Chr6:27484430-27484449 MsG0680031826.01.T01:intron 30.0%
!! GTTTGTTATTTCAATGGAGA+AGG - Chr6:27480596-27480615 MsG0680031826.01.T01:three_prime_UTR 30.0%
!! TAGAATTCTGAAATTCATGC+AGG + Chr6:27485458-27485477 None:intergenic 30.0%
!! TTATAAGGTTCAGTTTGCTA+AGG + Chr6:27484345-27484364 None:intergenic 30.0%
!! TTTTGCTTGTTACTAACTCT+TGG - Chr6:27484016-27484035 MsG0680031826.01.T01:CDS 30.0%
!!! AAGGCCAAATTTTGAGTTTA+TGG + Chr6:27481459-27481478 None:intergenic 30.0%
!!! CATCAATTTTTTTAGGCTCT+TGG - Chr6:27485344-27485363 MsG0680031826.01.T01:intron 30.0%
!!! TCAATTTTTTTAGGCTCTTG+GGG - Chr6:27485346-27485365 MsG0680031826.01.T01:intron 30.0%
AAGCTCTCTTAAAACCAATC+TGG - Chr6:27482268-27482287 MsG0680031826.01.T01:CDS 35.0%
AAGTAATTGTGTGACCGTTT+GGG - Chr6:27482583-27482602 MsG0680031826.01.T01:CDS 35.0%
ACAGGTATCTGTTCATTCTT+TGG - Chr6:27482330-27482349 MsG0680031826.01.T01:intron 35.0%
ACATTCAAGGACCAAAATGA+AGG + Chr6:27483142-27483161 None:intergenic 35.0%
ACGTGTAGAATTACGATTGT+TGG + Chr6:27481599-27481618 None:intergenic 35.0%
ACTAAGAAAAGACGTATCGA+AGG + Chr6:27483215-27483234 None:intergenic 35.0%
ACTGCTTCATGGATCATAAT+TGG + Chr6:27481041-27481060 None:intergenic 35.0%
AGATATGCCTTTAGACATTG+TGG - Chr6:27483505-27483524 MsG0680031826.01.T01:intron 35.0%
AGCTCTCTTAAAACCAATCT+GGG - Chr6:27482269-27482288 MsG0680031826.01.T01:CDS 35.0%
ATAAGTTATCCCAACCCAAA+CGG + Chr6:27482600-27482619 None:intergenic 35.0%
CAAACCCAATTATGATTGTG+AGG + Chr6:27482007-27482026 None:intergenic 35.0%
CAGTTATGTAGGAATAGGAT+AGG + Chr6:27482852-27482871 None:intergenic 35.0%
CATCCAACAGTTAGTAACAA+TGG + Chr6:27485251-27485270 None:intergenic 35.0%
CATTGTTACTAACTGTTGGA+TGG - Chr6:27485249-27485268 MsG0680031826.01.T01:intron 35.0%
CTCTTATAATTAGGACCTGA+GGG + Chr6:27484477-27484496 None:intergenic 35.0%
GAAGCAGATATCTCAAATGA+AGG + Chr6:27483563-27483582 None:intergenic 35.0%
GATAAACTAGCTGATACTAG+TGG - Chr6:27481175-27481194 MsG0680031826.01.T01:three_prime_UTR 35.0%
GCAATCAGTTATGTAGGAAT+AGG + Chr6:27482857-27482876 None:intergenic 35.0%
GCTCGTCTATTTACATTTAG+AGG + Chr6:27481855-27481874 None:intergenic 35.0%
GTATGCTCGTGAGAAAAAAT+TGG - Chr6:27481387-27481406 MsG0680031826.01.T01:three_prime_UTR 35.0%
GTTCACCTCACAATCATAAT+TGG - Chr6:27481999-27482018 MsG0680031826.01.T01:CDS 35.0%
TAAGTAATTGTGTGACCGTT+TGG - Chr6:27482582-27482601 MsG0680031826.01.T01:CDS 35.0%
TCACATAAGTCAATCCAAAC+AGG + Chr6:27482547-27482566 None:intergenic 35.0%
TCTCTTATAATTAGGACCTG+AGG + Chr6:27484478-27484497 None:intergenic 35.0%
TGTCCCTTAAATGTGTCAAA+CGG + Chr6:27483377-27483396 None:intergenic 35.0%
TGTCTCTGTTAATTGACATC+AGG - Chr6:27483678-27483697 MsG0680031826.01.T01:CDS 35.0%
! AAAGACCATTTTATCCAACC+TGG - Chr6:27485417-27485436 MsG0680031826.01.T01:CDS 35.0%
! AAGACCATTTTATCCAACCT+GGG - Chr6:27485418-27485437 MsG0680031826.01.T01:CDS 35.0%
! ACGTCTTTTCTTAGTGAGTT+TGG - Chr6:27483220-27483239 MsG0680031826.01.T01:intron 35.0%
! CAAATGAAGGAAATTGACTC+TGG + Chr6:27483550-27483569 None:intergenic 35.0%
! GTTTGCTAAGGATAGGAAAA+AGG + Chr6:27484333-27484352 None:intergenic 35.0%
! TATCTGTTTGAGATAGGTAC+CGG - Chr6:27480536-27480555 MsG0680031826.01.T02:three_prime_UTR 35.0%
! TCATTTGAGATATCTGCTTC+AGG - Chr6:27483563-27483582 MsG0680031826.01.T01:intron 35.0%
! TCTGAAATTCATGCAGGTAA+TGG + Chr6:27485452-27485471 None:intergenic 35.0%
! TTCGTAACTGAAGTATTTGC+CGG + Chr6:27484205-27484224 None:intergenic 35.0%
!! AATTTGGTGGAAGAAGCATT+AGG - Chr6:27482431-27482450 MsG0680031826.01.T01:CDS 35.0%
!! ACAGTTGATGGTTGAAAACA+AGG + Chr6:27485217-27485236 None:intergenic 35.0%
!! CGAATAAGTTCAGGTTGAAT+CGG + Chr6:27484861-27484880 None:intergenic 35.0%
!! GGGCTTTGTTAGGTAAAAAA+TGG - Chr6:27481143-27481162 MsG0680031826.01.T01:three_prime_UTR 35.0%
!!! AGAAGCTATTTTAGGACTTG+AGG + Chr6:27483828-27483847 None:intergenic 35.0%
!!! AGGAAATTGACTCTGGTTTT+CGG + Chr6:27483543-27483562 None:intergenic 35.0%
AACTGAAAGCAGCAATGACA+CGG + Chr6:27485173-27485192 None:intergenic 40.0%
AAGAAAGAAGTGGGAACAGT+TGG - Chr6:27480571-27480590 MsG0680031826.01.T02:three_prime_UTR 40.0%
AATGGAACAGAGATTGGGAA+TGG + Chr6:27480723-27480742 None:intergenic 40.0%
ACAGAAGTAGCTTCTCAGTT+GGG - Chr6:27483856-27483875 MsG0680031826.01.T01:CDS 40.0%
ACGCCGTTTGACACATTTAA+GGG - Chr6:27483371-27483390 MsG0680031826.01.T01:intron 40.0%
ACTGCAAAAGTTGAGGAACA+CGG + Chr6:27484395-27484414 None:intergenic 40.0%
ACTTAAGCAATTGTCGTCCA+TGG - Chr6:27483012-27483031 MsG0680031826.01.T01:intron 40.0%
AGAATGTAATCCCATGTCTC+AGG + Chr6:27483481-27483500 None:intergenic 40.0%
CCTTAGTCACTGAAGCTAAA+TGG + Chr6:27481930-27481949 None:intergenic 40.0%
CGACATTACAACAGAAGACA+TGG - Chr6:27483894-27483913 MsG0680031826.01.T01:intron 40.0%
CTGTCACTATAGTCCTTGAA+TGG - Chr6:27483170-27483189 MsG0680031826.01.T01:intron 40.0%
CTTAAGCAATTGTCGTCCAT+GGG - Chr6:27483013-27483032 MsG0680031826.01.T01:intron 40.0%
CTTCTTATAATTAGGACCCG+AGG - Chr6:27484642-27484661 MsG0680031826.01.T01:intron 40.0%
GACAAGATTAAAGACGACGA+TGG - Chr6:27485384-27485403 MsG0680031826.01.T01:CDS 40.0%
GACAGTGCTTAACACATTCA+AGG + Chr6:27483155-27483174 None:intergenic 40.0%
GACCAGAGTAAAGAAGATGA+TGG - Chr6:27484151-27484170 MsG0680031826.01.T01:intron 40.0%
GAGCAAGAGAACAAGATTCT+GGG + Chr6:27484687-27484706 None:intergenic 40.0%
GCGTCAGAAACAGAGTTAAT+TGG + Chr6:27480768-27480787 None:intergenic 40.0%
GTCTAAAGGGATCAAATCTG+TGG + Chr6:27481659-27481678 None:intergenic 40.0%
GTGACACAGACACTAATACA+TGG - Chr6:27481059-27481078 MsG0680031826.01.T01:intron 40.0%
TAATGACATGAGACAAGAGC+TGG + Chr6:27485082-27485101 None:intergenic 40.0%
TACAACAGAAGACATGGCTT+TGG - Chr6:27483900-27483919 MsG0680031826.01.T01:intron 40.0%
TACAGAAGTAGCTTCTCAGT+TGG - Chr6:27483855-27483874 MsG0680031826.01.T01:CDS 40.0%
TCTGTGTTAATGCTACACCT+AGG + Chr6:27481493-27481512 None:intergenic 40.0%
TGAGACATGGGATTACATTC+TGG - Chr6:27483480-27483499 MsG0680031826.01.T01:intron 40.0%
TGAGCAAGAGAACAAGATTC+TGG + Chr6:27484688-27484707 None:intergenic 40.0%
TGCCATCATCTTCTTTACTC+TGG + Chr6:27484156-27484175 None:intergenic 40.0%
TGTAGCAACTGCAAAAGTTG+AGG + Chr6:27484402-27484421 None:intergenic 40.0%
TTTCTCCTGATCAGCTATCT+GGG - Chr6:27484948-27484967 MsG0680031826.01.T01:intron 40.0%
! AGAGAAATGTGTTACTGCCT+CGG + Chr6:27484662-27484681 None:intergenic 40.0%
! CATGTAGTGAGACCCTATTT+TGG + Chr6:27482797-27482816 None:intergenic 40.0%
! CCATTTAGCTTCAGTGACTA+AGG - Chr6:27481927-27481946 MsG0680031826.01.T01:three_prime_UTR 40.0%
! CTAGTAGTTTGTGCTGGAAA+TGG - Chr6:27483040-27483059 MsG0680031826.01.T01:intron 40.0%
! GCTTGTTACTAACTCTTGGA+TGG - Chr6:27484020-27484039 MsG0680031826.01.T01:intron 40.0%
! TATTCGGTGAAATTCGTTGC+TGG - Chr6:27480992-27481011 MsG0680031826.01.T01:three_prime_UTR 40.0%
! TCGTAACTGAAGTATTTGCC+GGG + Chr6:27484204-27484223 None:intergenic 40.0%
! TCTTCCATTTTCCTTTCTGC+TGG - Chr6:27484832-27484851 MsG0680031826.01.T01:intron 40.0%
! TTTTCTCCTGATCAGCTATC+TGG - Chr6:27484947-27484966 MsG0680031826.01.T01:intron 40.0%
!! AGGTTCAGTTTGCTAAGGAT+AGG + Chr6:27484340-27484359 None:intergenic 40.0%
!! ATTTGCCGGGTTGGTTAAAA+TGG + Chr6:27484191-27484210 None:intergenic 40.0%
!! CAAGACCATTTTAACCAACC+CGG - Chr6:27484183-27484202 MsG0680031826.01.T01:CDS 40.0%
!! CATCAGGTAATGGATGAACT+CGG - Chr6:27483694-27483713 MsG0680031826.01.T01:CDS 40.0%
!! GGGTCCTCCATATTTTTGAT+TGG - Chr6:27482156-27482175 MsG0680031826.01.T01:intron 40.0%
!! GTTTGGGTTGGGATAACTTA+TGG - Chr6:27482599-27482618 MsG0680031826.01.T01:CDS 40.0%
!! TCATTGCTGCTTTCAGTTCA+TGG - Chr6:27485175-27485194 MsG0680031826.01.T01:intron 40.0%
!!! TCAATGGTTTTCGGTGTTTC+TGG - Chr6:27482204-27482223 MsG0680031826.01.T01:intron 40.0%
AACCAATCTGGGAAAACTGC+TGG - Chr6:27482280-27482299 MsG0680031826.01.T01:CDS 45.0%
AAGAGTAACACCCTCACCAA+TGG + Chr6:27484444-27484463 None:intergenic 45.0%
AATTGTGTGACCGTTTGGGT+TGG - Chr6:27482587-27482606 MsG0680031826.01.T01:CDS 45.0%
AGACTTACTTAGGGCCTGTT+TGG - Chr6:27482530-27482549 MsG0680031826.01.T01:intron 45.0%
AGTGACTAAGGTTTCTGCGA+CGG - Chr6:27481939-27481958 MsG0680031826.01.T01:three_prime_UTR 45.0%
ATGTATCCCCTGAGCTGAAA+GGG - Chr6:27482136-27482155 MsG0680031826.01.T01:intron 45.0%
CGGTGAAAATGGAGCTTCTA+TGG + Chr6:27485130-27485149 None:intergenic 45.0%
CGTCTCATCACTCTCTTTGA+AGG + Chr6:27482477-27482496 None:intergenic 45.0%
CTCAAATGAGCGAAACCAGA+AGG + Chr6:27485025-27485044 None:intergenic 45.0%
GACGCCGTTTGACACATTTA+AGG - Chr6:27483370-27483389 MsG0680031826.01.T01:intron 45.0%
GATGGTTGAAAACAAGGACC+TGG + Chr6:27485211-27485230 None:intergenic 45.0%
GCCTTTAGACATTGTGGCTA+GGG - Chr6:27483511-27483530 MsG0680031826.01.T01:intron 45.0%
GGATTTATCTCTTGCGGTGA+AGG - Chr6:27481960-27481979 MsG0680031826.01.T01:exon 45.0%
GTGACCAGCAGAAAGGAAAA+TGG + Chr6:27484839-27484858 None:intergenic 45.0%
TCCCTAGCCACAATGTCTAA+AGG + Chr6:27483515-27483534 None:intergenic 45.0%
TGCCTTTAGACATTGTGGCT+AGG - Chr6:27483510-27483529 MsG0680031826.01.T01:intron 45.0%
TGCTGAAAGCCTAGCAAAGA+TGG + Chr6:27484998-27485017 None:intergenic 45.0%
TGGAGCTTCTATGGAGATCA+CGG + Chr6:27485121-27485140 None:intergenic 45.0%
TGTTCAGCTGTTCTGCCAAA+TGG - Chr6:27484748-27484767 MsG0680031826.01.T01:intron 45.0%
TTGAAGGGATGAACAACTGC+CGG + Chr6:27480673-27480692 None:intergenic 45.0%
! AACTGAAGTATTTGCCGGGT+TGG + Chr6:27484200-27484219 None:intergenic 45.0%
! ACACCTTCAACCAGAAGTGT+CGG - Chr6:27481526-27481545 MsG0680031826.01.T01:three_prime_UTR 45.0%
! ATGGCCCAGGTTGGATAAAA+TGG + Chr6:27485425-27485444 None:intergenic 45.0%
! ATTAGGACCTGAGGGAGTAT+TGG + Chr6:27484469-27484488 None:intergenic 45.0%
! ATTGTGTGACCGTTTGGGTT+GGG - Chr6:27482588-27482607 MsG0680031826.01.T01:CDS 45.0%
! GAGAAATGTGTTACTGCCTC+GGG + Chr6:27484661-27484680 None:intergenic 45.0%
! TGCGACGGATTTATCTCTTG+CGG - Chr6:27481954-27481973 MsG0680031826.01.T01:exon 45.0%
! TTTAGGACTTGAGGCCTACA+TGG + Chr6:27483819-27483838 None:intergenic 45.0%
!! AACAGAAGACATGGCTTTGG+AGG - Chr6:27483903-27483922 MsG0680031826.01.T01:intron 45.0%
!! TAATTGGTCTTCTGCTGCTG+CGG + Chr6:27480752-27480771 None:intergenic 45.0%
!! TATAGGGTTTGTTGCACCAG+AGG + Chr6:27484776-27484795 None:intergenic 45.0%
!! TCATGCAGGTAATGGAAGCA+TGG + Chr6:27485444-27485463 None:intergenic 45.0%
!! TTGGTGGAAGAAGCATTAGG+TGG - Chr6:27482434-27482453 MsG0680031826.01.T01:CDS 45.0%
AAAGCAGCAATGACACGGAG+AGG + Chr6:27485168-27485187 None:intergenic 50.0%
AAGCAGCAATGACACGGAGA+GGG + Chr6:27485167-27485186 None:intergenic 50.0%
ACAAACTACTAGCCGACCCA+TGG + Chr6:27483032-27483051 None:intergenic 50.0%
AGCAATTGTCGTCCATGGGT+CGG - Chr6:27483017-27483036 MsG0680031826.01.T01:intron 50.0%
CGAAACGAAGGCGGTGAAAA+TGG + Chr6:27485141-27485160 None:intergenic 50.0%
CTCTTCACCAATACTCCCTC+AGG - Chr6:27484459-27484478 MsG0680031826.01.T01:intron 50.0%
CTGCTGCTGCGGAATTTGAA+TGG + Chr6:27480741-27480760 None:intergenic 50.0%
GAAAACAAGGACCTGGAGGA+TGG + Chr6:27485204-27485223 None:intergenic 50.0%
GACGAGCTTCTATGACTCTG+AGG - Chr6:27482493-27482512 MsG0680031826.01.T01:intron 50.0%
GATGTATCCCCTGAGCTGAA+AGG - Chr6:27482135-27482154 MsG0680031826.01.T01:intron 50.0%
GGCTTTCAGCATACTCCTTC+TGG - Chr6:27485007-27485026 MsG0680031826.01.T01:intron 50.0%
GGTTGAAAACAAGGACCTGG+AGG + Chr6:27485208-27485227 None:intergenic 50.0%
GTTCATGGTTTCCATCCTCC+AGG - Chr6:27485190-27485209 MsG0680031826.01.T01:intron 50.0%
GTTCTGCCAAATGGATCCTC+TGG - Chr6:27484757-27484776 MsG0680031826.01.T01:intron 50.0%
GTTGCACCAGAGGATCCATT+TGG + Chr6:27484766-27484785 None:intergenic 50.0%
TGAAGGGATGAACAACTGCC+GGG + Chr6:27480672-27480691 None:intergenic 50.0%
TGAATCGGTGACCAGCAGAA+AGG + Chr6:27484846-27484865 None:intergenic 50.0%
TGCTACACCTAGGCTCTGTT+TGG + Chr6:27481483-27481502 None:intergenic 50.0%
TGCTTCAGGATCTTACCCAG+AGG - Chr6:27483577-27483596 MsG0680031826.01.T01:intron 50.0%
! ACCAGTCGTCTTGTTCTTCC+CGG - Chr6:27480651-27480670 MsG0680031826.01.T01:three_prime_UTR 50.0%
! AGCCAGCAGTTTTCCCAGAT+TGG + Chr6:27482285-27482304 None:intergenic 50.0%
! GTGTCTGTGTCACTGCTTCA+TGG + Chr6:27481052-27481071 None:intergenic 50.0%
!! ATGTGTGTCGGTGTCGAGTA+GGG - Chr6:27481123-27481142 MsG0680031826.01.T01:three_prime_UTR 50.0%
!! GTGTCGAGTAGGGCTTTGTT+AGG - Chr6:27481133-27481152 MsG0680031826.01.T01:three_prime_UTR 50.0%
AGAGGGGATCGAAACGAAGG+CGG + Chr6:27485150-27485169 None:intergenic 55.0%
AGCAGCAATGACACGGAGAG+GGG + Chr6:27485166-27485185 None:intergenic 55.0%
ATGGAGGACCCTTTCAGCTC+AGG + Chr6:27482147-27482166 None:intergenic 55.0%
CACCTAGGCTCTGTTTGGCA+AGG + Chr6:27481478-27481497 None:intergenic 55.0%
GGCATCCCAGATAGCTGATC+AGG + Chr6:27484956-27484975 None:intergenic 55.0%
TGGAGGACCCTTTCAGCTCA+GGG + Chr6:27482146-27482165 None:intergenic 55.0%
! AATGGAAGCATGGCCCAGGT+TGG + Chr6:27485434-27485453 None:intergenic 55.0%
! ATAGGGCGCTCCTGAGACAT+GGG - Chr6:27483468-27483487 MsG0680031826.01.T01:intron 55.0%
! GCACCGACACTTCTGGTTGA+AGG + Chr6:27481532-27481551 None:intergenic 55.0%
! GGTCGGCTAGTAGTTTGTGC+TGG - Chr6:27483034-27483053 MsG0680031826.01.T01:intron 55.0%
! TATAGGGCGCTCCTGAGACA+TGG - Chr6:27483467-27483486 MsG0680031826.01.T01:intron 55.0%
!! AGGTAATGGAAGCATGGCCC+AGG + Chr6:27485438-27485457 None:intergenic 55.0%
!! CACAGAAGCACCGACACTTC+TGG + Chr6:27481539-27481558 None:intergenic 55.0%
!! CATGTGTGTCGGTGTCGAGT+AGG - Chr6:27481122-27481141 MsG0680031826.01.T01:three_prime_UTR 55.0%
CGGAGAGGGGATCGAAACGA+AGG + Chr6:27485153-27485172 None:intergenic 60.0%
GCCGGGAAGAACAAGACGAC+TGG + Chr6:27480655-27480674 None:intergenic 60.0%
GGAGGACCCTTTCAGCTCAG+GGG + Chr6:27482145-27482164 None:intergenic 60.0%
GGCCTTGCCAAACAGAGCCT+AGG - Chr6:27481473-27481492 MsG0680031826.01.T01:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 27480527 27485632 27480527 ID=MsG0680031826.01;Name=MsG0680031826.01
Chr6 mRNA 27480576 27485632 27480576 ID=MsG0680031826.01.T01;Parent=MsG0680031826.01;Name=MsG0680031826.01.T01;_AED=0.32;_eAED=0.32;_QI=82|1|1|1|0.9|0.81|11|1356|293
Chr6 exon 27480576 27481064 27480576 ID=MsG0680031826.01.T01:exon:8635;Parent=MsG0680031826.01.T01
Chr6 exon 27481096 27482031 27481096 ID=MsG0680031826.01.T01:exon:8634;Parent=MsG0680031826.01.T01
Chr6 five_prime_UTR 27485551 27485632 27485551 ID=MsG0680031826.01.T01:five_prime_utr;Parent=MsG0680031826.01.T01
Chr6 CDS 27485355 27485550 27485355 ID=MsG0680031826.01.T01:cds;Parent=MsG0680031826.01.T01
Chr6 CDS 27484178 27484224 27484178 ID=MsG0680031826.01.T01:cds;Parent=MsG0680031826.01.T01
Chr6 CDS 27483982 27484036 27483982 ID=MsG0680031826.01.T01:cds;Parent=MsG0680031826.01.T01
Chr6 CDS 27483826 27483898 27483826 ID=MsG0680031826.01.T01:cds;Parent=MsG0680031826.01.T01
Chr6 CDS 27483645 27483732 27483645 ID=MsG0680031826.01.T01:cds;Parent=MsG0680031826.01.T01
Chr6 CDS 27483073 27483155 27483073 ID=MsG0680031826.01.T01:cds;Parent=MsG0680031826.01.T01
Chr6 CDS 27482561 27482687 27482561 ID=MsG0680031826.01.T01:cds;Parent=MsG0680031826.01.T01
Chr6 CDS 27482381 27482459 27482381 ID=MsG0680031826.01.T01:cds;Parent=MsG0680031826.01.T01
Chr6 CDS 27482235 27482299 27482235 ID=MsG0680031826.01.T01:cds;Parent=MsG0680031826.01.T01
Chr6 CDS 27481963 27482031 27481963 ID=MsG0680031826.01.T01:cds;Parent=MsG0680031826.01.T01
Chr6 three_prime_UTR 27481096 27481962 27481096 ID=MsG0680031826.01.T01:three_prime_utr;Parent=MsG0680031826.01.T01
Chr6 three_prime_UTR 27480576 27481064 27480576 ID=MsG0680031826.01.T01:three_prime_utr;Parent=MsG0680031826.01.T01
Chr6 mRNA 27480527 27485632 27480527 ID=MsG0680031826.01.T02;Parent=MsG0680031826.01;Name=MsG0680031826.01.T02;_AED=0.40;_eAED=0.40;_QI=82|1|1|1|0.9|0.81|11|318|293
Chr6 exon 27480527 27480800 27480527 ID=MsG0680031826.01.T02:exon:8637;Parent=MsG0680031826.01.T02
Chr6 exon 27481919 27482031 27481919 ID=MsG0680031826.01.T02:exon:8636;Parent=MsG0680031826.01.T02
Chr6 five_prime_UTR 27485551 27485632 27485551 ID=MsG0680031826.01.T02:five_prime_utr;Parent=MsG0680031826.01.T02
Chr6 CDS 27485355 27485550 27485355 ID=MsG0680031826.01.T02:cds;Parent=MsG0680031826.01.T02
Chr6 CDS 27484178 27484224 27484178 ID=MsG0680031826.01.T02:cds;Parent=MsG0680031826.01.T02
Chr6 CDS 27483982 27484036 27483982 ID=MsG0680031826.01.T02:cds;Parent=MsG0680031826.01.T02
Chr6 CDS 27483826 27483898 27483826 ID=MsG0680031826.01.T02:cds;Parent=MsG0680031826.01.T02
Chr6 CDS 27483645 27483732 27483645 ID=MsG0680031826.01.T02:cds;Parent=MsG0680031826.01.T02
Chr6 CDS 27483073 27483155 27483073 ID=MsG0680031826.01.T02:cds;Parent=MsG0680031826.01.T02
Chr6 CDS 27482561 27482687 27482561 ID=MsG0680031826.01.T02:cds;Parent=MsG0680031826.01.T02
Chr6 CDS 27482381 27482459 27482381 ID=MsG0680031826.01.T02:cds;Parent=MsG0680031826.01.T02
Chr6 CDS 27482235 27482299 27482235 ID=MsG0680031826.01.T02:cds;Parent=MsG0680031826.01.T02
Chr6 CDS 27481963 27482031 27481963 ID=MsG0680031826.01.T02:cds;Parent=MsG0680031826.01.T02
Chr6 three_prime_UTR 27481919 27481962 27481919 ID=MsG0680031826.01.T02:three_prime_utr;Parent=MsG0680031826.01.T02
Chr6 three_prime_UTR 27480527 27480800 27480527 ID=MsG0680031826.01.T02:three_prime_utr;Parent=MsG0680031826.01.T02
Gene Sequence

>MsG0680031826.01.T01

ATGGAGAAGGCAGCAAGCAGTATGTTGAAGCAGATGAACATCACCAGTCGTCTTGTTCTTCCCGGCAGTTGTTCATCCCTTCAATCTTCATCTTCTTCATCTCTTCACTTTCCATTCCCAATCTCTGTTCCATTCAAATTCCGCAGCAGCAGAAGACCAATTAACTCTGTTTCTGACGCTGCTTTTCCTGTTCCATCTTCAGTGACTAAGGTTTCTGCGACGGATTTATCTCTTGCGGTGAAGAAAAAAGCAGCAGATGTATCCCCTGAGCTGAAAGGGTCCTCCATATTTTTGATTGGTATGAAAAGCTCTCTTAAAACCAATCTGGGAAAACTGCTGGCTGATGTATTGCGATATTATTATTTTGACAGCGATAATTTGGTGGAAGAAGCATTAGGTGGTGCAGCAGCTGCAAAATCCTTCAAAGAGAGTGATGAGACGAGCTTCTATGACTCTGAGACTGAAGTACTTAAGCAATTGTCGTCCATGGGTCGGCTAGTAGTTTGTGCTGGAAATGGCGCTGTACAAAATTCAACTAATCTGGCGCTCCTGAGACATGGGATTACATTCTGGATAGATATGCCTTTAGACATTGTGGCTAGGGATGTAACCGAAAACCAGAGTCAATTTCCTTCATTTGAGATATCTGCTTCAGGATCTTACCCAGAGGTAATGGATGAACTCGGTGCTCTATACAATAAGTACAAAGACGGATATGCTACAGCCGATGCAATTATTTCACTTCAAAAAGTAGCTTCTCAGTTGGGTTATGAAAACGTAGACGACATTACAACAGAAGACATGGCTTTGGAGGTTCTTCGAGAGATTGAGAAGTTGACCAGAGTAAAGAAGATGATGGCAGAAGCTGCAAGACCATTTTAA

>MsG0680031826.01.T02

ATGGAGAAGGCAGCAAGCAGTATGTTGAAGCAGATGAACATCACCAGTCGTCTTGTTCTTCCCGGCAGTTGTTCATCCCTTCAATCTTCATCTTCTTCATCTCTTCACTTTCCATTCCCAATCTCTGTTCCATTCAAATTCCGCAGCAGCAGAAGACCAATTAACTCTGTTTCTGACGCTGCTTTTCCTGTTCCATCTTCAGTGACTAAGGTTTCTGCGACGGATTTATCTCTTGCGGTGAAGAAAAAAGCAGCAGATGTATCCCCTGAGCTGAAAGGGTCCTCCATATTTTTGATTGGTATGAAAAGCTCTCTTAAAACCAATCTGGGAAAACTGCTGGCTGATGTATTGCGATATTATTATTTTGACAGCGATAATTTGGTGGAAGAAGCATTAGGTGGTGCAGCAGCTGCAAAATCCTTCAAAGAGAGTGATGAGACGAGCTTCTATGACTCTGAGACTGAAGTACTTAAGCAATTGTCGTCCATGGGTCGGCTAGTAGTTTGTGCTGGAAATGGCGCTGTACAAAATTCAACTAATCTGGCGCTCCTGAGACATGGGATTACATTCTGGATAGATATGCCTTTAGACATTGTGGCTAGGGATGTAACCGAAAACCAGAGTCAATTTCCTTCATTTGAGATATCTGCTTCAGGATCTTACCCAGAGGTAATGGATGAACTCGGTGCTCTATACAATAAGTACAAAGACGGATATGCTACAGCCGATGCAATTATTTCACTTCAAAAAGTAGCTTCTCAGTTGGGTTATGAAAACGTAGACGACATTACAACAGAAGACATGGCTTTGGAGGTTCTTCGAGAGATTGAGAAGTTGACCAGAGTAAAGAAGATGATGGCAGAAGCTGCAAGACCATTTTAA

Protein sequence

>MsG0680031826.01.T01

MEKAASSMLKQMNITSRLVLPGSCSSLQSSSSSSLHFPFPISVPFKFRSSRRPINSVSDAAFPVPSSVTKVSATDLSLAVKKKAADVSPELKGSSIFLIGMKSSLKTNLGKLLADVLRYYYFDSDNLVEEALGGAAAAKSFKESDETSFYDSETEVLKQLSSMGRLVVCAGNGAVQNSTNLALLRHGITFWIDMPLDIVARDVTENQSQFPSFEISASGSYPEVMDELGALYNKYKDGYATADAIISLQKVASQLGYENVDDITTEDMALEVLREIEKLTRVKKMMAEAARPF*

>MsG0680031826.01.T02

MEKAASSMLKQMNITSRLVLPGSCSSLQSSSSSSLHFPFPISVPFKFRSSRRPINSVSDAAFPVPSSVTKVSATDLSLAVKKKAADVSPELKGSSIFLIGMKSSLKTNLGKLLADVLRYYYFDSDNLVEEALGGAAAAKSFKESDETSFYDSETEVLKQLSSMGRLVVCAGNGAVQNSTNLALLRHGITFWIDMPLDIVARDVTENQSQFPSFEISASGSYPEVMDELGALYNKYKDGYATADAIISLQKVASQLGYENVDDITTEDMALEVLREIEKLTRVKKMMAEAARPF*