Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031694.01.T01 | XP_003618966.1 | 52.747 | 91 | 41 | 2 | 1 | 90 | 1 | 90 | 9.97E-18 | 81.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031694.01.T01 | G7KPM7 | 52.747 | 91 | 41 | 2 | 1 | 90 | 1 | 90 | 4.76e-18 | 81.3 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047912.01 | MsG0680031694.01 | 0.803210 | 3.885558e-49 | 1.941188e-46 |
| MsG0080048197.01 | MsG0680031694.01 | 0.809925 | 1.486577e-50 | 8.841498e-48 |
| MsG0080048656.01 | MsG0680031694.01 | 0.850273 | 1.888666e-60 | 3.679674e-57 |
| MsG0080048764.01 | MsG0680031694.01 | 0.812002 | 5.277742e-51 | 3.316321e-48 |
| MsG0080048843.01 | MsG0680031694.01 | 0.806630 | 7.493112e-50 | 4.086766e-47 |
| MsG0180000023.01 | MsG0680031694.01 | 0.804710 | 1.895177e-49 | 9.840752e-47 |
| MsG0180000157.01 | MsG0680031694.01 | 0.837935 | 3.875999e-57 | 5.112674e-54 |
| MsG0180000673.01 | MsG0680031694.01 | 0.834491 | 2.906249e-56 | 3.454563e-53 |
| MsG0180001009.01 | MsG0680031694.01 | 0.824004 | 1.020511e-53 | 8.927868e-51 |
| MsG0180001043.01 | MsG0680031694.01 | 0.857865 | 1.219748e-62 | 3.053738e-59 |
| MsG0180001712.01 | MsG0680031694.01 | 0.826104 | 3.258497e-54 | 3.026884e-51 |
| MsG0180002075.01 | MsG0680031694.01 | 0.808719 | 2.697872e-50 | 1.553815e-47 |
| MsG0180002491.01 | MsG0680031694.01 | 0.803011 | 4.272865e-49 | 2.123690e-46 |
| MsG0180002912.01 | MsG0680031694.01 | 0.804238 | 2.378102e-49 | 1.219806e-46 |
| MsG0180003088.01 | MsG0680031694.01 | 0.844371 | 7.880839e-59 | 1.269534e-55 |
| MsG0180003174.01 | MsG0680031694.01 | 0.813085 | 3.060435e-51 | 1.979342e-48 |
| MsG0180003252.01 | MsG0680031694.01 | 0.808925 | 2.436657e-50 | 1.411110e-47 |
| MsG0180003586.01 | MsG0680031694.01 | 0.801545 | 8.561216e-49 | 4.099500e-46 |
| MsG0180003805.01 | MsG0680031694.01 | 0.826407 | 2.759617e-54 | 2.585848e-51 |
| MsG0180004388.01 | MsG0680031694.01 | 0.828236 | 1.005506e-54 | 9.935717e-52 |
| MsG0180004886.01 | MsG0680031694.01 | -0.802534 | 5.361130e-49 | 2.632521e-46 |
| MsG0180004991.01 | MsG0680031694.01 | 0.808185 | 3.506540e-50 | 1.991744e-47 |
| MsG0180005125.01 | MsG0680031694.01 | 0.857804 | 1.271831e-62 | 3.177358e-59 |
| MsG0180005676.01 | MsG0680031694.01 | -0.814866 | 1.238607e-51 | 8.407080e-49 |
| MsG0180006016.01 | MsG0680031694.01 | 0.815923 | 7.206706e-52 | 5.034959e-49 |
| MsG0180006023.01 | MsG0680031694.01 | 0.802164 | 6.387528e-49 | 3.107180e-46 |
| MsG0280006411.01 | MsG0680031694.01 | 0.800306 | 1.533347e-48 | 7.116096e-46 |
| MsG0280011235.01 | MsG0680031694.01 | 0.815790 | 7.717325e-52 | 5.372642e-49 |
| MsG0380011754.01 | MsG0680031694.01 | 0.811982 | 5.331405e-51 | 3.348140e-48 |
| MsG0380011870.01 | MsG0680031694.01 | 0.801514 | 8.686396e-49 | 4.156248e-46 |
| MsG0380014330.01 | MsG0680031694.01 | 0.813207 | 2.877012e-51 | 1.866924e-48 |
| MsG0680030841.01 | MsG0680031694.01 | 0.816701 | 4.827712e-52 | 3.445482e-49 |
| MsG0680031133.01 | MsG0680031694.01 | 0.814801 | 1.280201e-51 | 8.674612e-49 |
| MsG0680031536.01 | MsG0680031694.01 | 0.848381 | 6.355143e-60 | 1.164074e-56 |
| MsG0680031538.01 | MsG0680031694.01 | 0.817186 | 3.756701e-52 | 2.716959e-49 |
| MsG0680031694.01 | MsG0680031712.01 | 0.831323 | 1.782044e-55 | 1.927179e-52 |
| MsG0680031694.01 | MsG0680031967.01 | 0.803482 | 3.413639e-49 | 1.717421e-46 |
| MsG0680031694.01 | MsG0680032430.01 | 0.817577 | 3.067483e-52 | 2.242404e-49 |
| MsG0680031694.01 | MsG0680032641.01 | 0.812373 | 4.380760e-51 | 2.780482e-48 |
| MsG0680031694.01 | MsG0680033391.01 | 0.807702 | 4.441906e-50 | 2.491105e-47 |
| MsG0680031694.01 | MsG0680034061.01 | 0.816940 | 4.267195e-52 | 3.065717e-49 |
| MsG0680031694.01 | MsG0680034450.01 | 0.823807 | 1.135073e-53 | 9.876768e-51 |
| MsG0680031694.01 | MsG0680034672.01 | 0.812394 | 4.334714e-51 | 2.753000e-48 |
| MsG0680031694.01 | MsG0680035048.01 | 0.812297 | 4.550976e-51 | 2.882717e-48 |
| MsG0680031694.01 | MsG0680035582.01 | 0.811261 | 7.649128e-51 | 4.712721e-48 |
| MsG0680031694.01 | MsG0780036291.01 | 0.814634 | 1.394257e-51 | 9.405098e-49 |
| MsG0680031694.01 | MsG0780036550.01 | 0.824358 | 8.430714e-54 | 7.450142e-51 |
| MsG0680031694.01 | MsG0780036582.01 | 0.805097 | 1.573799e-49 | 8.253518e-47 |
| MsG0680031694.01 | MsG0780037503.01 | 0.805057 | 1.603918e-49 | 8.403090e-47 |
| MsG0680031694.01 | MsG0780038444.01 | 0.831598 | 1.524421e-55 | 1.662279e-52 |
| MsG0680031694.01 | MsG0780038495.01 | 0.814881 | 1.229011e-51 | 8.345351e-49 |
| MsG0680031694.01 | MsG0780038937.01 | 0.815150 | 1.071114e-51 | 7.326440e-49 |
| MsG0680031694.01 | MsG0780039452.01 | 0.833440 | 5.326465e-56 | 6.134737e-53 |
| MsG0680031694.01 | MsG0780039570.01 | 0.805919 | 1.057851e-49 | 5.666306e-47 |
| MsG0680031694.01 | MsG0780039841.01 | 0.816842 | 4.488307e-52 | 3.215805e-49 |
| MsG0680031694.01 | MsG0780039950.01 | 0.853087 | 3.012752e-61 | 6.433122e-58 |
| MsG0680031694.01 | MsG0780040861.01 | 0.843298 | 1.526893e-58 | 2.378611e-55 |
| MsG0680031694.01 | MsG0780040929.01 | 0.857205 | 1.912766e-62 | 4.683873e-59 |
| MsG0680031694.01 | MsG0780041376.01 | 0.812175 | 4.839203e-51 | 3.055142e-48 |
| MsG0680031694.01 | MsG0880041969.01 | 0.824672 | 7.109290e-54 | 6.340608e-51 |
| MsG0680031694.01 | MsG0880042611.01 | 0.801524 | 8.644360e-49 | 4.137255e-46 |
| MsG0680031694.01 | MsG0880042811.01 | 0.835380 | 1.735973e-56 | 2.119244e-53 |
| MsG0680031694.01 | MsG0880043002.01 | 0.814205 | 1.734408e-51 | 1.156410e-48 |
| MsG0680031694.01 | MsG0880043082.01 | 0.815913 | 7.244406e-52 | 5.059894e-49 |
| MsG0680031694.01 | MsG0880044075.01 | 0.803194 | 3.916606e-49 | 1.955913e-46 |
| MsG0680031694.01 | MsG0880044510.01 | 0.800966 | 1.124505e-48 | 5.306893e-46 |
| MsG0680031694.01 | MsG0880044542.01 | 0.811986 | 5.321535e-51 | 3.342257e-48 |
| MsG0680031694.01 | MsG0880044546.01 | 0.802893 | 4.519818e-49 | 2.239859e-46 |
| MsG0680031694.01 | MsG0880045479.01 | 0.804032 | 2.624866e-49 | 1.339355e-46 |
| MsG0680031694.01 | MsG0880045582.01 | 0.810806 | 9.598246e-51 | 5.842821e-48 |
| MsG0680031694.01 | MsG0880045583.01 | 0.864892 | 8.763287e-65 | 2.795503e-61 |
| MsG0680031694.01 | MsG0880045631.01 | 0.826373 | 2.811611e-54 | 2.632021e-51 |
| MsG0680031694.01 | MsG0880045897.01 | -0.823861 | 1.102700e-53 | 9.609350e-51 |
| MsG0680031694.01 | MsG0880046058.01 | 0.827595 | 1.434278e-54 | 1.390843e-51 |
| MsG0680031694.01 | MsG0880046074.01 | 0.802741 | 4.859287e-49 | 2.398815e-46 |
| MsG0680031694.01 | MsG0880046088.01 | 0.819417 | 1.174396e-52 | 9.032021e-50 |
| MsG0680031694.01 | MsG0880046113.01 | 0.808603 | 2.856238e-50 | 1.640107e-47 |
| MsG0680031694.01 | MsG0880046177.01 | 0.810780 | 9.723959e-51 | 5.915311e-48 |
| MsG0680031694.01 | MsG0880046731.01 | 0.836816 | 7.496429e-57 | 9.555331e-54 |
| MsG0680031694.01 | MsG0880046733.01 | 0.828849 | 7.153896e-55 | 7.195274e-52 |
| MsG0680031694.01 | MsG0880046762.01 | 0.829679 | 4.498601e-55 | 4.636988e-52 |
| MsG0680031694.01 | MsG0880046933.01 | 0.828898 | 6.959196e-55 | 7.009964e-52 |
| MsG0680031694.01 | MsG0880047016.01 | 0.806480 | 8.057816e-50 | 4.378298e-47 |
| MsG0680031694.01 | MsG0880047143.01 | 0.805410 | 1.352794e-49 | 7.151956e-47 |
| MsG0680031694.01 | MsG0880047191.01 | 0.829192 | 5.904764e-55 | 6.000545e-52 |
| MsG0680031694.01 | MsG0880047590.01 | 0.829322 | 5.492536e-55 | 5.603325e-52 |
| MsG0680031694.01 | MsG0880047607.01 | 0.812553 | 4.000913e-51 | 2.551664e-48 |
| MsG0480018906.01 | MsG0680031694.01 | 0.833329 | 5.678774e-56 | 6.519058e-53 |
| MsG0480018970.01 | MsG0680031694.01 | 0.820761 | 5.780952e-53 | 4.615411e-50 |
| MsG0480019163.01 | MsG0680031694.01 | -0.812632 | 3.845449e-51 | 2.457558e-48 |
| MsG0480019642.01 | MsG0680031694.01 | 0.821962 | 3.053895e-53 | 2.521551e-50 |
| MsG0480020242.01 | MsG0680031694.01 | 0.804773 | 1.839381e-49 | 9.566381e-47 |
| MsG0480020318.01 | MsG0680031694.01 | 0.811328 | 7.396715e-51 | 4.565061e-48 |
| MsG0480020372.01 | MsG0680031694.01 | 0.826863 | 2.147662e-54 | 2.038720e-51 |
| MsG0480020416.01 | MsG0680031694.01 | 0.803787 | 2.951332e-49 | 1.496486e-46 |
| MsG0480020445.01 | MsG0680031694.01 | 0.822363 | 2.466322e-53 | 2.060041e-50 |
| MsG0480020791.01 | MsG0680031694.01 | 0.805830 | 1.104336e-49 | 5.901810e-47 |
| MsG0480020843.01 | MsG0680031694.01 | 0.839423 | 1.599102e-57 | 2.207378e-54 |
| MsG0480021731.01 | MsG0680031694.01 | 0.813866 | 2.060825e-51 | 1.361494e-48 |
| MsG0480022183.01 | MsG0680031694.01 | 0.808973 | 2.379824e-50 | 1.380004e-47 |
| MsG0480022480.01 | MsG0680031694.01 | 0.805048 | 1.610797e-49 | 8.437064e-47 |
| MsG0480022707.01 | MsG0680031694.01 | 0.805184 | 1.509047e-49 | 7.931731e-47 |
| MsG0480023361.01 | MsG0680031694.01 | 0.800480 | 1.413260e-48 | 6.587369e-46 |
| MsG0480023417.01 | MsG0680031694.01 | 0.821259 | 4.439577e-53 | 3.593768e-50 |
| MsG0480023517.01 | MsG0680031694.01 | 0.839001 | 2.056945e-57 | 2.802745e-54 |
| MsG0580024073.01 | MsG0680031694.01 | 0.805258 | 1.456021e-49 | 7.667197e-47 |
| MsG0580024191.01 | MsG0680031694.01 | 0.815605 | 8.487221e-52 | 5.878720e-49 |
| MsG0580024458.01 | MsG0680031694.01 | -0.849441 | 3.227620e-60 | 6.119053e-57 |
| MsG0580025134.01 | MsG0680031694.01 | 0.836348 | 9.863129e-57 | 1.239743e-53 |
| MsG0580025278.01 | MsG0680031694.01 | 0.815628 | 8.386729e-52 | 5.812798e-49 |
| MsG0580025453.01 | MsG0680031694.01 | 0.809785 | 1.594008e-50 | 9.445825e-48 |
| MsG0580025769.01 | MsG0680031694.01 | 0.826959 | 2.037539e-54 | 1.939752e-51 |
| MsG0380015181.01 | MsG0680031694.01 | 0.807241 | 5.565829e-50 | 3.084260e-47 |
| MsG0380015400.01 | MsG0680031694.01 | 0.804717 | 1.888912e-49 | 9.810139e-47 |
| MsG0380015686.01 | MsG0680031694.01 | 0.804119 | 2.516612e-49 | 1.287019e-46 |
| MsG0380015779.01 | MsG0680031694.01 | 0.827716 | 1.341472e-54 | 1.305576e-51 |
| MsG0380015793.01 | MsG0680031694.01 | -0.809350 | 1.975878e-50 | 1.157464e-47 |
| MsG0380016102.01 | MsG0680031694.01 | 0.801547 | 8.552098e-49 | 4.095339e-46 |
| MsG0380016227.01 | MsG0680031694.01 | 0.807632 | 4.598323e-50 | 2.574104e-47 |
| MsG0380016342.01 | MsG0680031694.01 | -0.822896 | 1.853174e-53 | 1.571430e-50 |
| MsG0380016483.01 | MsG0680031694.01 | 0.812145 | 4.913195e-51 | 3.099340e-48 |
| MsG0380017226.01 | MsG0680031694.01 | 0.893320 | 7.014731e-75 | 6.649665e-71 |
| MsG0380017286.01 | MsG0680031694.01 | 0.830991 | 2.149684e-55 | 2.302125e-52 |
| MsG0380017431.01 | MsG0680031694.01 | 0.816167 | 6.357045e-52 | 4.471350e-49 |
| MsG0380017888.01 | MsG0680031694.01 | 0.802984 | 4.327426e-49 | 2.149395e-46 |
| MsG0380017998.01 | MsG0680031694.01 | 0.819145 | 1.354234e-52 | 1.033625e-49 |
| MsG0380018001.01 | MsG0680031694.01 | 0.814090 | 1.838622e-51 | 1.222089e-48 |
| MsG0380018052.01 | MsG0680031694.01 | 0.809036 | 2.307964e-50 | 1.340561e-47 |
| MsG0480018213.01 | MsG0680031694.01 | 0.812384 | 4.355661e-51 | 2.765464e-48 |
| MsG0580027129.01 | MsG0680031694.01 | 0.807565 | 4.751539e-50 | 2.655142e-47 |
| MsG0580027401.01 | MsG0680031694.01 | 0.830478 | 2.871189e-55 | 3.028363e-52 |
| MsG0580027441.01 | MsG0680031694.01 | 0.809337 | 1.989302e-50 | 1.164843e-47 |
| MsG0580027628.01 | MsG0680031694.01 | 0.804051 | 2.600892e-49 | 1.327784e-46 |
| MsG0580028185.01 | MsG0680031694.01 | 0.809080 | 2.257953e-50 | 1.313094e-47 |
| MsG0580028605.01 | MsG0680031694.01 | 0.812141 | 4.923233e-51 | 3.105312e-48 |
| MsG0580029148.01 | MsG0680031694.01 | 0.813068 | 3.085913e-51 | 1.994983e-48 |
| MsG0580029258.01 | MsG0680031694.01 | 0.833032 | 6.729407e-56 | 7.656668e-53 |
| MsG0580030095.01 | MsG0680031694.01 | -0.801772 | 7.690224e-49 | 3.703646e-46 |
| MsG0580030160.01 | MsG0680031694.01 | 0.802890 | 4.525234e-49 | 2.242418e-46 |
| MsG0280006519.01 | MsG0680031694.01 | 0.803894 | 2.803818e-49 | 1.425670e-46 |
| MsG0280006596.01 | MsG0680031694.01 | 0.815551 | 8.723511e-52 | 6.033136e-49 |
| MsG0280007258.01 | MsG0680031694.01 | 0.806885 | 6.618887e-50 | 3.634072e-47 |
| MsG0280007439.01 | MsG0680031694.01 | 0.821541 | 3.822263e-53 | 3.118581e-50 |
| MsG0280007609.01 | MsG0680031694.01 | 0.842630 | 2.298902e-58 | 3.506356e-55 |
| MsG0280008286.01 | MsG0680031694.01 | 0.820912 | 5.337220e-53 | 4.279200e-50 |
| MsG0280008885.01 | MsG0680031694.01 | 0.833889 | 4.113657e-56 | 4.802367e-53 |
| MsG0280008907.01 | MsG0680031694.01 | 0.810516 | 1.108970e-50 | 6.698359e-48 |
| MsG0280009140.01 | MsG0680031694.01 | 0.817123 | 3.882187e-52 | 2.802839e-49 |
| MsG0280009235.01 | MsG0680031694.01 | 0.801750 | 7.769058e-49 | 3.739499e-46 |
| MsG0280010002.01 | MsG0680031694.01 | 0.804957 | 1.683271e-49 | 8.796562e-47 |
| MsG0280010389.01 | MsG0680031694.01 | 0.831993 | 1.218151e-55 | 1.343900e-52 |
| MsG0280010423.01 | MsG0680031694.01 | -0.826792 | 2.233301e-54 | 2.115696e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031694.01.T01 | MTR_6g029390 | 52.747 | 91 | 41 | 2 | 1 | 90 | 1 | 90 | 1.21e-21 | 81.3 |
| MsG0680031694.01.T01 | MTR_5g098200 | 51.667 | 60 | 29 | 0 | 1 | 60 | 1 | 60 | 3.08e-13 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031694.01.T01 | AT5G14602 | 63.415 | 41 | 15 | 0 | 1 | 41 | 1 | 41 | 3.83e-13 | 59.3 |
| MsG0680031694.01.T01 | AT5G18150 | 82.759 | 29 | 5 | 0 | 1 | 29 | 1 | 29 | 8.22e-13 | 58.5 |
Find 28 sgRNAs with CRISPR-Local
Find 69 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATGATTCAAATGGATTT+TGG | 0.092886 | 6:-24757286 | MsG0680031694.01.T01:CDS |
| AGAGAGAGATGTGTCCTTTA+AGG | 0.173917 | 6:-24757959 | MsG0680031694.01.T01:exon |
| ATTGAAATCCTCTAAGAATT+AGG | 0.190751 | 6:-24757194 | MsG0680031694.01.T01:exon |
| ATTGAGTCCCTAATTCTTAG+AGG | 0.300143 | 6:+24757186 | None:intergenic |
| AACACCAAGATGAACCTTAA+AGG | 0.300317 | 6:+24757945 | None:intergenic |
| GATCTTCACCAAAGATGATT+TGG | 0.305001 | 6:-24757878 | MsG0680031694.01.T01:CDS |
| GGTGTTCTTCTCTGCGGTTC+TGG | 0.325709 | 6:-24757928 | MsG0680031694.01.T01:CDS |
| TTGAAATCCTCTAAGAATTA+GGG | 0.358948 | 6:-24757193 | MsG0680031694.01.T01:exon |
| TAAAATTTGTACAAGAATGT+TGG | 0.359414 | 6:+24758052 | None:intergenic |
| ATCACAAGCCAAATCATCTT+TGG | 0.376408 | 6:+24757870 | None:intergenic |
| TTCTGGCAGGTTACTTTGCA+TGG | 0.389470 | 6:-24757911 | MsG0680031694.01.T01:CDS |
| AAAATTTGTACAAGAATGTT+GGG | 0.392593 | 6:+24758053 | None:intergenic |
| TGGCTAGTGGAAGGTATCTA+TGG | 0.397595 | 6:-24757250 | MsG0680031694.01.T01:CDS |
| GTGGGTTCAAGAATAATCTT+TGG | 0.400788 | 6:-24757140 | MsG0680031694.01.T01:three_prime_UTR |
| TTCTTCTCTGCGGTTCTGGC+AGG | 0.404540 | 6:-24757924 | MsG0680031694.01.T01:CDS |
| GTGTCATAAATCCTTGTTTG+TGG | 0.445301 | 6:-24757159 | MsG0680031694.01.T01:three_prime_UTR |
| TTTGTACAAGAATGTTGGGT+TGG | 0.456163 | 6:+24758057 | None:intergenic |
| GTGTCCTTTAAGGTTCATCT+TGG | 0.474313 | 6:-24757949 | MsG0680031694.01.T01:CDS |
| AGGTATCTATGGAGAATTTG+AGG | 0.480912 | 6:-24757239 | MsG0680031694.01.T01:CDS |
| TGTCATAAATCCTTGTTTGT+GGG | 0.513684 | 6:-24757158 | MsG0680031694.01.T01:three_prime_UTR |
| GGTATCTATGGAGAATTTGA+GGG | 0.560940 | 6:-24757238 | MsG0680031694.01.T01:CDS |
| GGCTTGTGATGATTCAATTG+AGG | 0.570775 | 6:-24757857 | MsG0680031694.01.T01:CDS |
| AGGTTACTTTGCATGGAGAA+CGG | 0.580884 | 6:-24757904 | MsG0680031694.01.T01:CDS |
| GTATTCGTTGACATGGCTAG+TGG | 0.585469 | 6:-24757263 | MsG0680031694.01.T01:CDS |
| TATTCTTGAACCCACAAACA+AGG | 0.585639 | 6:+24757148 | None:intergenic |
| CATCTTGGTGTTCTTCTCTG+CGG | 0.597461 | 6:-24757934 | MsG0680031694.01.T01:CDS |
| TCGTTGACATGGCTAGTGGA+AGG | 0.632760 | 6:-24757259 | MsG0680031694.01.T01:CDS |
| GTATCTATGGAGAATTTGAG+GGG | 0.679719 | 6:-24757237 | MsG0680031694.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTATATAATTGATCT+TGG | - | Chr6:24757470-24757489 | MsG0680031694.01.T01:intron | 10.0% |
| !!! | TTATTTTTAATTTTTGTGTT+TGG | - | Chr6:24757886-24757905 | MsG0680031694.01.T01:CDS | 10.0% |
| !! | AAAATTAAAATTCCAAGATT+TGG | + | Chr6:24757552-24757571 | None:intergenic | 15.0% |
| !! | AATTAATAACTAATGTTGAT+TGG | - | Chr6:24757613-24757632 | MsG0680031694.01.T01:intron | 15.0% |
| !!! | AACATAACTTTAAAAGATAA+AGG | + | Chr6:24757498-24757517 | None:intergenic | 15.0% |
| !!! | ATTAATAACTAATGTTGATT+GGG | - | Chr6:24757614-24757633 | MsG0680031694.01.T01:intron | 15.0% |
| !!! | TTGATATTTTTTGTTTTATG+AGG | + | Chr6:24757147-24757166 | None:intergenic | 15.0% |
| !! | AAAATTTGTACAAGAATGTT+GGG | + | Chr6:24757188-24757207 | None:intergenic | 20.0% |
| !! | TAAAATTTGTACAAGAATGT+TGG | + | Chr6:24757189-24757208 | None:intergenic | 20.0% |
| !! | TTAGATGATGTTTATTGTTA+AGG | - | Chr6:24757640-24757659 | MsG0680031694.01.T01:intron | 20.0% |
| !!! | AAAAATCACATTGTTGTTTA+AGG | - | Chr6:24757243-24757262 | MsG0680031694.01.T01:CDS | 20.0% |
| !!! | TAAATCTTGGAATTTTCTTT+GGG | - | Chr6:24757828-24757847 | MsG0680031694.01.T01:CDS | 20.0% |
| !!! | TTAAATCTTGGAATTTTCTT+TGG | - | Chr6:24757827-24757846 | MsG0680031694.01.T01:CDS | 20.0% |
| !!! | TTGTACAAATTTTAATTCGT+GGG | - | Chr6:24757195-24757214 | MsG0680031694.01.T01:CDS | 20.0% |
| ! | AGAAAAATCATCTTTCAAGA+AGG | - | Chr6:24757405-24757424 | MsG0680031694.01.T01:intron | 25.0% |
| ! | AGATGATATGCTAATTGATT+TGG | - | Chr6:24757735-24757754 | MsG0680031694.01.T01:intron | 25.0% |
| ! | ATTCACCAAAATATGTTGAT+TGG | - | Chr6:24757782-24757801 | MsG0680031694.01.T01:intron | 25.0% |
| ! | GATGTTTATTGTTAAGGTTT+GGG | - | Chr6:24757646-24757665 | MsG0680031694.01.T01:intron | 25.0% |
| ! | TGATGTTTATTGTTAAGGTT+TGG | - | Chr6:24757645-24757664 | MsG0680031694.01.T01:intron | 25.0% |
| ! | TTAATCATGGGAATAATGAT+TGG | - | Chr6:24757706-24757725 | MsG0680031694.01.T01:intron | 25.0% |
| !! | AAATCTTGGAATTTTCTTTG+GGG | - | Chr6:24757829-24757848 | MsG0680031694.01.T01:CDS | 25.0% |
| !! | AACTCATCAAAATGTTGATT+GGG | - | Chr6:24757925-24757944 | MsG0680031694.01.T01:CDS | 25.0% |
| !! | ATTGAAATCCTCTAAGAATT+AGG | - | Chr6:24758044-24758063 | MsG0680031694.01.T01:five_prime_UTR | 25.0% |
| !! | CAACAATGTGATTTTTATGA+AGG | + | Chr6:24757239-24757258 | None:intergenic | 25.0% |
| !! | GATGATATGCTAATTGATTT+GGG | - | Chr6:24757736-24757755 | MsG0680031694.01.T01:intron | 25.0% |
| !! | TAAACCCAATCAACATATTT+TGG | + | Chr6:24757790-24757809 | None:intergenic | 25.0% |
| !! | TTCACCAAAATATGTTGATT+GGG | - | Chr6:24757783-24757802 | MsG0680031694.01.T01:intron | 25.0% |
| !! | TTGAAATCCTCTAAGAATTA+GGG | - | Chr6:24758045-24758064 | MsG0680031694.01.T01:five_prime_UTR | 25.0% |
| !!! | AGATGATTCAAATGGATTTT+GGG | - | Chr6:24757953-24757972 | MsG0680031694.01.T01:CDS | 25.0% |
| !!! | ATTTTTTGTTTTATGAGGAG+AGG | + | Chr6:24757142-24757161 | None:intergenic | 25.0% |
| !!! | CTTGTACAAATTTTAATTCG+TGG | - | Chr6:24757194-24757213 | MsG0680031694.01.T01:exon | 25.0% |
| !!! | GGAAGATTTTGATTTCAAAA+AGG | - | Chr6:24757426-24757445 | MsG0680031694.01.T01:intron | 25.0% |
| !!! | GTGTTTGGTTTTTTAATCAT+GGG | - | Chr6:24757694-24757713 | MsG0680031694.01.T01:intron | 25.0% |
| !!! | TGTGTTTGGTTTTTTAATCA+TGG | - | Chr6:24757693-24757712 | MsG0680031694.01.T01:intron | 25.0% |
| GAACTCATCAAAATGTTGAT+TGG | - | Chr6:24757924-24757943 | MsG0680031694.01.T01:CDS | 30.0% | |
| TCTTTGTGTTTGATTGTGTT+TGG | - | Chr6:24757679-24757698 | MsG0680031694.01.T01:intron | 30.0% | |
| ! | GAGGTTTTCATGTTAAATCT+TGG | - | Chr6:24757815-24757834 | MsG0680031694.01.T01:CDS | 30.0% |
| ! | TGTCATAAATCCTTGTTTGT+GGG | - | Chr6:24758080-24758099 | MsG0680031694.01.T01:five_prime_UTR | 30.0% |
| !! | CAGATGATTCAAATGGATTT+TGG | - | Chr6:24757952-24757971 | MsG0680031694.01.T01:CDS | 30.0% |
| AACACCAAGATGAACCTTAA+AGG | + | Chr6:24757296-24757315 | None:intergenic | 35.0% | |
| AGGTATCTATGGAGAATTTG+AGG | - | Chr6:24757999-24758018 | MsG0680031694.01.T01:five_prime_UTR | 35.0% | |
| ATCACAAGCCAAATCATCTT+TGG | + | Chr6:24757371-24757390 | None:intergenic | 35.0% | |
| ATTGAGTCCCTAATTCTTAG+AGG | + | Chr6:24758055-24758074 | None:intergenic | 35.0% | |
| GATCTTCACCAAAGATGATT+TGG | - | Chr6:24757360-24757379 | MsG0680031694.01.T01:intron | 35.0% | |
| GGTATCTATGGAGAATTTGA+GGG | - | Chr6:24758000-24758019 | MsG0680031694.01.T01:five_prime_UTR | 35.0% | |
| GTATCTATGGAGAATTTGAG+GGG | - | Chr6:24758001-24758020 | MsG0680031694.01.T01:five_prime_UTR | 35.0% | |
| GTGGGTTCAAGAATAATCTT+TGG | - | Chr6:24758098-24758117 | MsG0680031694.01.T01:five_prime_UTR | 35.0% | |
| GTTGATTGGGTTTATAGATG+AGG | - | Chr6:24757796-24757815 | MsG0680031694.01.T01:intron | 35.0% | |
| TAGTCTACGAATCCAAATCT+TGG | - | Chr6:24757537-24757556 | MsG0680031694.01.T01:intron | 35.0% | |
| TATTCTTGAACCCACAAACA+AGG | + | Chr6:24758093-24758112 | None:intergenic | 35.0% | |
| TTTGTACAAGAATGTTGGGT+TGG | + | Chr6:24757184-24757203 | None:intergenic | 35.0% | |
| ! | GGGTTTTCAGATGATTCAAA+TGG | - | Chr6:24757945-24757964 | MsG0680031694.01.T01:CDS | 35.0% |
| ! | GTGTCATAAATCCTTGTTTG+TGG | - | Chr6:24758079-24758098 | MsG0680031694.01.T01:five_prime_UTR | 35.0% |
| !! | ATTTTGGGTATTCGTTGACA+TGG | - | Chr6:24757968-24757987 | MsG0680031694.01.T01:exon | 35.0% |
| !! | TTGTTTTATGAGGAGAGGAA+AGG | + | Chr6:24757137-24757156 | None:intergenic | 35.0% |
| AGAGAGAGATGTGTCCTTTA+AGG | - | Chr6:24757279-24757298 | MsG0680031694.01.T01:CDS | 40.0% | |
| GGCTTGTGATGATTCAATTG+AGG | - | Chr6:24757381-24757400 | MsG0680031694.01.T01:intron | 40.0% | |
| ! | AGGTTACTTTGCATGGAGAA+CGG | - | Chr6:24757334-24757353 | MsG0680031694.01.T01:intron | 40.0% |
| !! | GTGTCCTTTAAGGTTCATCT+TGG | - | Chr6:24757289-24757308 | MsG0680031694.01.T01:intron | 40.0% |
| !!! | CTTGGAATTTTCTTTGGGGT+TGG | - | Chr6:24757833-24757852 | MsG0680031694.01.T01:CDS | 40.0% |
| GTATTCGTTGACATGGCTAG+TGG | - | Chr6:24757975-24757994 | MsG0680031694.01.T01:five_prime_UTR | 45.0% | |
| ! | TTCTGGCAGGTTACTTTGCA+TGG | - | Chr6:24757327-24757346 | MsG0680031694.01.T01:intron | 45.0% |
| !! | CATCTTGGTGTTCTTCTCTG+CGG | - | Chr6:24757304-24757323 | MsG0680031694.01.T01:intron | 45.0% |
| !! | TGGCTAGTGGAAGGTATCTA+TGG | - | Chr6:24757988-24758007 | MsG0680031694.01.T01:five_prime_UTR | 45.0% |
| !!! | AAAAAATAATATTTTTTTGA+AGG | + | Chr6:24757457-24757476 | None:intergenic | 5.0% |
| !!! | AAAAATAATATTTTTTTGAA+GGG | + | Chr6:24757456-24757475 | None:intergenic | 5.0% |
| TCGTTGACATGGCTAGTGGA+AGG | - | Chr6:24757979-24757998 | MsG0680031694.01.T01:five_prime_UTR | 50.0% | |
| GGTGTTCTTCTCTGCGGTTC+TGG | - | Chr6:24757310-24757329 | MsG0680031694.01.T01:intron | 55.0% | |
| ! | TTCTTCTCTGCGGTTCTGGC+AGG | - | Chr6:24757314-24757333 | MsG0680031694.01.T01:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 24757103 | 24758157 | 24757103 | ID=MsG0680031694.01;Name=MsG0680031694.01 |
| Chr6 | mRNA | 24757103 | 24758157 | 24757103 | ID=MsG0680031694.01.T01;Parent=MsG0680031694.01;Name=MsG0680031694.01.T01;_AED=0.04;_eAED=0.04;_QI=184|0|0.5|1|0|0|2|92|90 |
| Chr6 | exon | 24757813 | 24758157 | 24757813 | ID=MsG0680031694.01.T01:exon:12218;Parent=MsG0680031694.01.T01 |
| Chr6 | exon | 24757103 | 24757306 | 24757103 | ID=MsG0680031694.01.T01:exon:12219;Parent=MsG0680031694.01.T01 |
| Chr6 | five_prime_UTR | 24757974 | 24758157 | 24757974 | ID=MsG0680031694.01.T01:five_prime_utr;Parent=MsG0680031694.01.T01 |
| Chr6 | CDS | 24757813 | 24757973 | 24757813 | ID=MsG0680031694.01.T01:cds;Parent=MsG0680031694.01.T01 |
| Chr6 | CDS | 24757195 | 24757306 | 24757195 | ID=MsG0680031694.01.T01:cds;Parent=MsG0680031694.01.T01 |
| Chr6 | three_prime_UTR | 24757103 | 24757194 | 24757103 | ID=MsG0680031694.01.T01:three_prime_utr;Parent=MsG0680031694.01.T01 |
| Gene Sequence |
| Protein sequence |
