AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020085.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020085.01.T01 MTR_4g044297 96.070 229 6 2 1 227 1 228 1.67e-163 454
MsG0480020085.01.T01 MTR_2g090210 78.761 226 42 2 8 227 10 235 1.56e-128 366
MsG0480020085.01.T01 MTR_6g066280 47.685 216 82 3 33 225 12 219 6.31e-60 192
MsG0480020085.01.T01 MTR_6g082450 40.613 261 111 4 3 226 67 320 1.24e-55 183
MsG0480020085.01.T01 MTR_1g077460 46.414 237 105 6 9 225 13 247 5.14e-55 179
MsG0480020085.01.T01 MTR_4g120990 40.377 265 124 6 2 236 65 325 1.55e-54 180
MsG0480020085.01.T01 MTR_1g110070 40.316 253 109 5 8 226 89 333 8.59e-53 176
MsG0480020085.01.T01 MTR_2g035080 38.824 255 120 6 3 225 73 323 8.48e-47 160
MsG0480020085.01.T01 MTR_1g087830 36.585 205 90 4 18 222 65 229 8.13e-38 134
MsG0480020085.01.T01 MTR_1g087810 36.898 187 88 3 39 225 83 239 1.74e-32 120
MsG0480020085.01.T01 MTR_6g044130 67.347 49 15 1 178 225 1 49 1.47e-13 65.9
MsG0480020085.01.T01 MTR_6g077930 30.000 220 94 9 38 220 812 1008 2.13e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020085.01.T01 AT1G03610 66.387 238 66 4 1 232 4 233 5.93e-107 309
MsG0480020085.01.T01 AT4G03420 71.875 224 59 2 8 227 7 230 5.62e-105 306
MsG0480020085.01.T01 AT1G03610 66.524 233 64 4 1 227 4 228 1.16e-103 303
MsG0480020085.01.T01 AT4G28150 62.712 236 64 4 1 227 1 221 3.83e-94 278
MsG0480020085.01.T01 AT4G28150 62.185 238 64 5 1 227 1 223 3.83e-92 273
MsG0480020085.01.T01 AT1G17830 53.556 239 94 6 3 226 13 249 4.95e-72 223
MsG0480020085.01.T01 AT4G28150 58.252 206 60 5 1 195 1 191 6.18e-70 213
MsG0480020085.01.T01 AT1G73210 50.855 234 93 4 3 225 7 229 2.65e-69 215
MsG0480020085.01.T01 AT1G73210 50.427 234 96 4 3 225 7 231 1.02e-68 214
MsG0480020085.01.T01 AT1G73210 50.427 234 96 4 3 225 7 231 1.02e-68 214
MsG0480020085.01.T01 AT2G01260 41.322 242 118 4 6 228 62 298 8.44e-51 168
MsG0480020085.01.T01 AT4G16100 43.290 231 114 6 9 226 88 314 3.52e-50 169
MsG0480020085.01.T01 AT1G15030 41.463 246 120 6 3 226 42 285 4.02e-50 166
MsG0480020085.01.T01 AT2G01260 41.250 240 117 4 6 226 62 296 2.13e-49 166
MsG0480020085.01.T01 AT1G15030 41.463 246 120 6 3 226 42 285 2.20e-49 166
MsG0480020085.01.T01 AT5G49220 40.254 236 123 5 2 223 101 332 5.55e-47 160
MsG0480020085.01.T01 AT5G23380 36.564 227 125 4 7 226 6 220 1.30e-31 116
MsG0480020085.01.T01 AT5G23380 36.564 227 125 4 7 226 6 220 1.30e-31 116
MsG0480020085.01.T01 AT5G23380 37.445 227 119 5 7 224 6 218 7.14e-30 113
MsG0480020085.01.T01 AT2G01260 35.359 181 93 4 6 167 62 237 1.43e-22 93.2

Find 53 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGAAACCTTAACCGTTTA+TGG 0.049207 4:-33705391 MsG0480020085.01.T01:CDS
GTCCCTCCCTTTCAGATTAA+TGG 0.178578 4:-33703221 MsG0480020085.01.T01:intron
ATTTCACTCTGAGTGATCTT+TGG 0.265625 4:-33705340 MsG0480020085.01.T01:CDS
TTCAGAGAAGAGATTGATTC+TGG 0.274830 4:-33705099 MsG0480020085.01.T01:intron
TCCTTATACATGTTTGGAAT+TGG 0.275884 4:-33702815 MsG0480020085.01.T01:CDS
TCCAATTCCAAACATGTATA+AGG 0.300888 4:+33702814 None:intergenic
TATTTACAAGCAATAATTTC+AGG 0.321189 4:-33705211 MsG0480020085.01.T01:intron
AAATTTACCTTATCAATTAG+AGG 0.328507 4:+33704898 None:intergenic
TTTGGAATTGTTTCGATGAA+TGG 0.331760 4:-33705322 MsG0480020085.01.T01:CDS
CCCATGGGAATATGATATAT+CGG 0.340823 4:+33702907 None:intergenic
TCCCTCCCTTTCAGATTAAT+GGG 0.345433 4:-33703220 MsG0480020085.01.T01:intron
ACACTTTCATCTTCATTTCA+AGG 0.353986 4:-33702841 MsG0480020085.01.T01:CDS
AGGTATTCCTTATACATGTT+TGG 0.369532 4:-33702821 MsG0480020085.01.T01:CDS
GCAACTGCCATCCAACTTGC+TGG 0.415630 4:+33703146 None:intergenic
ACCATCTAAGTTTCTACAAA+AGG 0.419530 4:-33705520 MsG0480020085.01.T01:intron
TATCACACGGATTCCATAAA+CGG 0.423998 4:+33705378 None:intergenic
ACGGATTCCATAAACGGTTA+AGG 0.435111 4:+33705384 None:intergenic
CAATGAGGTCAATGCAATCT+AGG 0.444961 4:-33705584 MsG0480020085.01.T01:CDS
AGAAACTTAGATGGTACAAT+AGG 0.450966 4:+33705528 None:intergenic
ATTAGAGGAACTCTTCCATA+TGG 0.461032 4:+33704913 None:intergenic
ATCTTTAATTGTTCTTCCCA+TGG 0.468483 4:+33702891 None:intergenic
CTGGCATTTGAATGACCGAT+TGG 0.470292 4:-33704971 MsG0480020085.01.T01:CDS
AAGAGTTCCTCTAATTGATA+AGG 0.483084 4:-33704905 MsG0480020085.01.T01:intron
CCATGGGAATATGATATATC+GGG 0.486988 4:+33702908 None:intergenic
ATTTGAATTGCAGAGAGGTA+AGG 0.504614 4:+33705233 None:intergenic
CAAGTTGGATGGCAGTTGCT+TGG 0.508186 4:-33703142 MsG0480020085.01.T01:intron
TCTTTAATTGTTCTTCCCAT+GGG 0.512415 4:+33702892 None:intergenic
CATCTGAGCAAGATAGTCTC+TGG 0.520611 4:-33704990 MsG0480020085.01.T01:CDS
TGGCATTTGAATGACCGATT+GGG 0.527348 4:-33704970 MsG0480020085.01.T01:CDS
TATGGTGAAGAAAGCAATCA+AGG 0.530917 4:+33705556 None:intergenic
AGAGGTAAGGAACATAGTAT+TGG 0.534665 4:+33705246 None:intergenic
CCCGATATATCATATTCCCA+TGG 0.539980 4:-33702908 MsG0480020085.01.T01:CDS
ATAGCGAGTGTGATAAGCTA+TGG 0.542399 4:-33705032 MsG0480020085.01.T01:CDS
GGAAATAAAGATGACCCAAT+CGG 0.546064 4:+33704956 None:intergenic
TTCGATGAATGGAGTGCCTA+TGG 0.551127 4:-33705311 MsG0480020085.01.T01:CDS
TTGATCTATCACCAGCAAGT+TGG 0.551938 4:-33703157 MsG0480020085.01.T01:CDS
ATGGTACAATAGGTGTTGTA+TGG 0.558926 4:+33705538 None:intergenic
TTGACCTCATTGTATATCAA+AGG 0.560370 4:+33705595 None:intergenic
TCTTCCTTTGATATACAATG+AGG 0.561900 4:-33705599 MsG0480020085.01.T01:exon
GGGTTAGCAGAAAGATACCC+AGG 0.563766 4:-33703200 MsG0480020085.01.T01:CDS
GATTGGAACTCCAACGCCAT+AGG 0.589508 4:+33705295 None:intergenic
GAATGGAGTGCCTATGGCGT+TGG 0.591581 4:-33705305 MsG0480020085.01.T01:CDS
CTATGGACATCATCAGAAGA+GGG 0.597455 4:-33705015 MsG0480020085.01.T01:CDS
CCGATATATCATATTCCCAT+GGG 0.601439 4:-33702907 MsG0480020085.01.T01:CDS
ATGAAAGTGTGTGGTAAGTG+AGG 0.614288 4:+33702854 None:intergenic
GCTATGGACATCATCAGAAG+AGG 0.617480 4:-33705016 MsG0480020085.01.T01:CDS
TCAACTGTTTCTCTATCACA+CGG 0.620809 4:+33705365 None:intergenic
TCTATCACCAGCAAGTTGGA+TGG 0.627514 4:-33703153 MsG0480020085.01.T01:CDS
TTCTGGTGATAGTGAGACAA+GGG 0.640927 4:-33705082 MsG0480020085.01.T01:CDS
TAAATATTTGAATTGCAGAG+AGG 0.649675 4:+33705228 None:intergenic
ATTCTGGTGATAGTGAGACA+AGG 0.671618 4:-33705083 MsG0480020085.01.T01:CDS
GGTTAGCAGAAAGATACCCA+GGG 0.695930 4:-33703199 MsG0480020085.01.T01:CDS
GAAATGAAGATGAAAGTGTG+TGG 0.729995 4:+33702845 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTATCTTTTTTTTCT+GGG - Chr4:33703923-33703942 MsG0480020085.01.T01:intron 10.0%
!!! TTTATTTTATCTTTTTTTTC+TGG - Chr4:33703922-33703941 MsG0480020085.01.T01:intron 10.0%
!! AAAAGTTAATCACTTAAAAT+TGG - Chr4:33704892-33704911 MsG0480020085.01.T01:intron 15.0%
!! AATAAACCAAAAATCATAAA+AGG + Chr4:33703008-33703027 None:intergenic 15.0%
!! AGTCCATAATAAAATAAAAT+AGG + Chr4:33704514-33704533 None:intergenic 15.0%
!! ATGACAATTATAAAAGATTA+AGG + Chr4:33705397-33705416 None:intergenic 15.0%
!! ATTTAAATTTATAAGGTAAG+AGG - Chr4:33704821-33704840 MsG0480020085.01.T01:intron 15.0%
!! CATAATAAAATAAAATAGGT+GGG + Chr4:33704510-33704529 None:intergenic 15.0%
!! GTTAACATTATAATATTTCA+AGG - Chr4:33704031-33704050 MsG0480020085.01.T01:intron 15.0%
!! TTAAAAATAGGGAATATAAT+AGG - Chr4:33704058-33704077 MsG0480020085.01.T01:intron 15.0%
!! TTGAAAAAATCAATCTAATT+TGG + Chr4:33704611-33704630 None:intergenic 15.0%
!!! AAAGATAGAATTTTATTCTA+AGG - Chr4:33703987-33704006 MsG0480020085.01.T01:intron 15.0%
!!! AAATTTTTAATCTATGGATT+AGG - Chr4:33703725-33703744 MsG0480020085.01.T01:intron 15.0%
!!! AGTGAATTTCATTTTAATAA+AGG - Chr4:33704850-33704869 MsG0480020085.01.T01:intron 15.0%
!!! ATTTTTACTAATAGAATCAA+CGG + Chr4:33705193-33705212 None:intergenic 15.0%
!!! TATTATATTCCCTATTTTTA+AGG + Chr4:33704059-33704078 None:intergenic 15.0%
!!! TTTTTTATTTTTCAAACACT+CGG + Chr4:33704747-33704766 None:intergenic 15.0%
!!! TTTTTTCCTTTTATGATTTT+TGG - Chr4:33702999-33703018 MsG0480020085.01.T01:intron 15.0%
!! AAAGAACTTGAGATTTAAAT+CGG - Chr4:33704265-33704284 MsG0480020085.01.T01:intron 20.0%
!! AAATTTACCTTATCAATTAG+AGG + Chr4:33703580-33703599 None:intergenic 20.0%
!! AAGTTTACTAAATTTATTGC+TGG + Chr4:33704155-33704174 None:intergenic 20.0%
!! AATGGTTAAATTAGTACATT+TGG - Chr4:33705441-33705460 MsG0480020085.01.T01:intron 20.0%
!! AATTAGTATAAGTTATAGCA+AGG + Chr4:33705374-33705393 None:intergenic 20.0%
!! AATTCTATCTTTATATTCCT+AGG + Chr4:33703979-33703998 None:intergenic 20.0%
!! AGAAACATGTGATTAAAAAA+TGG + Chr4:33703667-33703686 None:intergenic 20.0%
!! AGTTTACTAAATTTATTGCT+GGG + Chr4:33704154-33704173 None:intergenic 20.0%
!! ATCATAAAAGGAAAAAAGAA+TGG + Chr4:33702996-33703015 None:intergenic 20.0%
!! CAATGAAAATTACAAAGATA+AGG + Chr4:33704428-33704447 None:intergenic 20.0%
!! CCATAATAAAATAAAATAGG+TGG + Chr4:33704511-33704530 None:intergenic 20.0%
!! CTAGACAATAATTTAAGTAA+AGG + Chr4:33704485-33704504 None:intergenic 20.0%
!! CTTTACTTAAATTATTGTCT+AGG - Chr4:33704483-33704502 MsG0480020085.01.T01:intron 20.0%
!! GTATTTAGAAAAAAGATGTT+TGG - Chr4:33704009-33704028 MsG0480020085.01.T01:intron 20.0%
!! GTGTTTGAAAAATAAAAAAG+AGG - Chr4:33704748-33704767 MsG0480020085.01.T01:intron 20.0%
!! TATTTACAAGCAATAATTTC+AGG - Chr4:33703264-33703283 MsG0480020085.01.T01:intron 20.0%
!!! AAGATTTTAAGCACTAATTT+AGG - Chr4:33705139-33705158 MsG0480020085.01.T01:intron 20.0%
!!! AGTAGGAAATTTTTAATCTA+TGG - Chr4:33703719-33703738 MsG0480020085.01.T01:intron 20.0%
!!! ATGTACTAAATTTTCATGTT+TGG - Chr4:33705476-33705495 MsG0480020085.01.T01:intron 20.0%
!!! CATTTTTCTTTAATTAGTGA+AGG - Chr4:33705414-33705433 MsG0480020085.01.T01:intron 20.0%
!!! CCACCTATTTTATTTTATTA+TGG - Chr4:33704508-33704527 MsG0480020085.01.T01:intron 20.0%
!!! GATATATTTTCAATCAAATC+GGG - Chr4:33704658-33704677 MsG0480020085.01.T01:intron 20.0%
!!! GGATATATTTTCAATCAAAT+CGG - Chr4:33704657-33704676 MsG0480020085.01.T01:intron 20.0%
!!! TCTTTGTAATTTTCATTGAT+TGG - Chr4:33704430-33704449 MsG0480020085.01.T01:intron 20.0%
! ACAAAAACATCACTATTTGT+TGG - Chr4:33704558-33704577 MsG0480020085.01.T01:intron 25.0%
! AGTGTATCAAATTTATTCCT+AGG - Chr4:33703959-33703978 MsG0480020085.01.T01:intron 25.0%
! CAAAAACATCACTATTTGTT+GGG - Chr4:33704559-33704578 MsG0480020085.01.T01:intron 25.0%
! GTACAAAGTGACAATTTATT+AGG + Chr4:33703838-33703857 None:intergenic 25.0%
! TAAATATTTGAATTGCAGAG+AGG + Chr4:33703250-33703269 None:intergenic 25.0%
! TTAATTAGTGAAGGTAGAAA+TGG - Chr4:33705423-33705442 MsG0480020085.01.T01:intron 25.0%
! TTCAAGGAACCTTAAAAATA+GGG - Chr4:33704047-33704066 MsG0480020085.01.T01:intron 25.0%
! TTTCAAGGAACCTTAAAAAT+AGG - Chr4:33704046-33704065 MsG0480020085.01.T01:intron 25.0%
! TTTGAAAAATCAACTCCATA+TGG - Chr4:33703547-33703566 MsG0480020085.01.T01:intron 25.0%
!! AAAAGTTTTCCCAAAGAAAA+TGG + Chr4:33704111-33704130 None:intergenic 25.0%
!! TCCAATCAACTTTAAAAATG+AGG - Chr4:33703196-33703215 MsG0480020085.01.T01:CDS 25.0%
!!! CATTGTTTTTTTCACAGTTT+TGG + Chr4:33704718-33704737 None:intergenic 25.0%
!!! GAGTTGATTTTTCAAAATAC+TGG + Chr4:33703543-33703562 None:intergenic 25.0%
!!! TACTCATGGTTGATATTTTT+AGG - Chr4:33705542-33705561 MsG0480020085.01.T01:CDS 25.0%
!!! TCCTCATTTTTAAAGTTGAT+TGG + Chr4:33703200-33703219 None:intergenic 25.0%
AAATATATCCACGAAACTGA+TGG + Chr4:33704647-33704666 None:intergenic 30.0%
AAATGTTGTAGATCTTGTGA+TGG - Chr4:33705065-33705084 MsG0480020085.01.T01:CDS 30.0%
AAGAGTTCCTCTAATTGATA+AGG - Chr4:33703570-33703589 MsG0480020085.01.T01:intron 30.0%
ACACTTTCATCTTCATTTCA+AGG - Chr4:33705634-33705653 MsG0480020085.01.T01:five_prime_UTR 30.0%
ACCATCTAAGTTTCTACAAA+AGG - Chr4:33702955-33702974 MsG0480020085.01.T01:intron 30.0%
ACTGTGAAAAAAACAATGTG+AGG - Chr4:33704720-33704739 MsG0480020085.01.T01:intron 30.0%
AGAAACTTAGATGGTACAAT+AGG + Chr4:33702950-33702969 None:intergenic 30.0%
AGAGATAAGAACATAAGACT+AGG + Chr4:33703860-33703879 None:intergenic 30.0%
AGGTATTCCTTATACATGTT+TGG - Chr4:33705654-33705673 MsG0480020085.01.T01:five_prime_UTR 30.0%
AGTTCTTTACTTGTTCACTT+AGG + Chr4:33704253-33704272 None:intergenic 30.0%
ATCTTTAATTGTTCTTCCCA+TGG + Chr4:33705587-33705606 None:intergenic 30.0%
CAAAGGAAGAAAAAAGAACA+AGG + Chr4:33702866-33702885 None:intergenic 30.0%
CGCTATACTGTGAATTTATT+TGG + Chr4:33704961-33704980 None:intergenic 30.0%
CTTTGTAATGCAAGTTTGTA+AGG - Chr4:33704983-33705002 MsG0480020085.01.T01:CDS 30.0%
GATCAATTGATCAATACTCA+TGG - Chr4:33705528-33705547 MsG0480020085.01.T01:CDS 30.0%
GTTCTTATCTCTTTCTTAAG+TGG - Chr4:33703868-33703887 MsG0480020085.01.T01:intron 30.0%
GTTCTTTACTTGTTCACTTA+GGG + Chr4:33704252-33704271 None:intergenic 30.0%
TCCAATTCCAAACATGTATA+AGG + Chr4:33705664-33705683 None:intergenic 30.0%
TCTCTTTCTTAAGTGGAAAT+AGG - Chr4:33703875-33703894 MsG0480020085.01.T01:intron 30.0%
TCTTCCTTTGATATACAATG+AGG - Chr4:33702876-33702895 MsG0480020085.01.T01:CDS 30.0%
TCTTTAATTGTTCTTCCCAT+GGG + Chr4:33705586-33705605 None:intergenic 30.0%
TGATTCTATGGTTGACAAAT+TGG - Chr4:33705232-33705251 MsG0480020085.01.T01:CDS 30.0%
TTAGAAACCTTAACCGTTTA+TGG - Chr4:33703084-33703103 MsG0480020085.01.T01:intron 30.0%
TTGACCTCATTGTATATCAA+AGG + Chr4:33702883-33702902 None:intergenic 30.0%
TTTGTCAACCATAGAATCAA+CGG + Chr4:33705231-33705250 None:intergenic 30.0%
! AAACCAAACAGCAAAAGTTT+TGG + Chr4:33704400-33704419 None:intergenic 30.0%
! ACCTTTTGTAGAAACTTAGA+TGG + Chr4:33702959-33702978 None:intergenic 30.0%
! ATTTTTCCCACCATTTTCTT+TGG - Chr4:33704098-33704117 MsG0480020085.01.T01:intron 30.0%
! TCCTTATACATGTTTGGAAT+TGG - Chr4:33705660-33705679 MsG0480020085.01.T01:five_prime_UTR 30.0%
! TTTGGAATTGTTTCGATGAA+TGG - Chr4:33703153-33703172 MsG0480020085.01.T01:CDS 30.0%
! TTTTTCCCACCATTTTCTTT+GGG - Chr4:33704099-33704118 MsG0480020085.01.T01:intron 30.0%
!!! AAAACTTTTGCTGTTTGGTT+TGG - Chr4:33704399-33704418 MsG0480020085.01.T01:intron 30.0%
AAGATGAGAGTCCATAGATT+AGG - Chr4:33703690-33703709 MsG0480020085.01.T01:intron 35.0%
AATGCAAGTTTGTAAGGTGT+TGG - Chr4:33704989-33705008 MsG0480020085.01.T01:CDS 35.0%
ACGTTTGTCTTGTACATTGT+AGG + Chr4:33705043-33705062 None:intergenic 35.0%
AGAGGTAAGGAACATAGTAT+TGG + Chr4:33703232-33703251 None:intergenic 35.0%
AGTGACAATTTATTAGGCAG+AGG + Chr4:33703832-33703851 None:intergenic 35.0%
ATTAGAGGAACTCTTCCATA+TGG + Chr4:33703565-33703584 None:intergenic 35.0%
ATTTCACTCTGAGTGATCTT+TGG - Chr4:33703135-33703154 MsG0480020085.01.T01:intron 35.0%
ATTTGAATTGCAGAGAGGTA+AGG + Chr4:33703245-33703264 None:intergenic 35.0%
CCATGGGAATATGATATATC+GGG + Chr4:33705570-33705589 None:intergenic 35.0%
CCCATGGGAATATGATATAT+CGG + Chr4:33705571-33705590 None:intergenic 35.0%
CCGATATATCATATTCCCAT+GGG - Chr4:33705568-33705587 MsG0480020085.01.T01:CDS 35.0%
GCTAACCCATTAATCTGAAA+GGG + Chr4:33705263-33705282 None:intergenic 35.0%
GGAAATAAAGATGACCCAAT+CGG + Chr4:33703522-33703541 None:intergenic 35.0%
TATCACACGGATTCCATAAA+CGG + Chr4:33703100-33703119 None:intergenic 35.0%
TATGGTGAAGAAAGCAATCA+AGG + Chr4:33702922-33702941 None:intergenic 35.0%
TGCTAACCCATTAATCTGAA+AGG + Chr4:33705264-33705283 None:intergenic 35.0%
! AGTTTTCCCAAAGAAAATGG+TGG + Chr4:33704108-33704127 None:intergenic 35.0%
! ATGGTACAATAGGTGTTGTA+TGG + Chr4:33702940-33702959 None:intergenic 35.0%
! CACAGAAGAAAAAGTGCATT+TGG + Chr4:33703318-33703337 None:intergenic 35.0%
! GAAATGAAGATGAAAGTGTG+TGG + Chr4:33705633-33705652 None:intergenic 35.0%
! GTTTTCCCAAAGAAAATGGT+GGG + Chr4:33704107-33704126 None:intergenic 35.0%
! TCAACTGTTTCTCTATCACA+CGG + Chr4:33703113-33703132 None:intergenic 35.0%
! TTCAGAGAAGAGATTGATTC+TGG - Chr4:33703376-33703395 MsG0480020085.01.T01:intron 35.0%
! TTGGGTTCTCATTTTCTTCA+AGG - Chr4:33702814-33702833 MsG0480020085.01.T01:CDS 35.0%
!! TTTTAAGTGACATCAACCCT+GGG + Chr4:33705295-33705314 None:intergenic 35.0%
!!! CAAACAGCAAAAGTTTTGGA+AGG + Chr4:33704396-33704415 None:intergenic 35.0%
!!! CTTCCAAAACTTTTGCTGTT+TGG - Chr4:33704394-33704413 MsG0480020085.01.T01:intron 35.0%
!!! GCACTTTTTCTTCTGTGATA+CGG - Chr4:33703321-33703340 MsG0480020085.01.T01:intron 35.0%
AACCCATTAATCTGAAAGGG+AGG + Chr4:33705260-33705279 None:intergenic 40.0%
ACCCATTAATCTGAAAGGGA+GGG + Chr4:33705259-33705278 None:intergenic 40.0%
ACGGATTCCATAAACGGTTA+AGG + Chr4:33703094-33703113 None:intergenic 40.0%
ATAGCGAGTGTGATAAGCTA+TGG - Chr4:33703443-33703462 MsG0480020085.01.T01:intron 40.0%
ATTGCTGGGTAAAATGTTCG+TGG + Chr4:33704140-33704159 None:intergenic 40.0%
CAATGAGGTCAATGCAATCT+AGG - Chr4:33702891-33702910 MsG0480020085.01.T01:CDS 40.0%
CATAGATTAGGCAAAGCAGT+AGG - Chr4:33703702-33703721 MsG0480020085.01.T01:intron 40.0%
CCCGATATATCATATTCCCA+TGG - Chr4:33705567-33705586 MsG0480020085.01.T01:CDS 40.0%
CTACTGCTTTGCCTAATCTA+TGG + Chr4:33703704-33703723 None:intergenic 40.0%
CTATGGACATCATCAGAAGA+GGG - Chr4:33703460-33703479 MsG0480020085.01.T01:intron 40.0%
GCAGAGGAAAATGAGATTTC+TGG + Chr4:33703816-33703835 None:intergenic 40.0%
TCCCTCCCTTTCAGATTAAT+GGG - Chr4:33705255-33705274 MsG0480020085.01.T01:CDS 40.0%
TGGCATTTGAATGACCGATT+GGG - Chr4:33703505-33703524 MsG0480020085.01.T01:intron 40.0%
TGTTGGAGTGTGTTTGATGT+GGG - Chr4:33705006-33705025 MsG0480020085.01.T01:CDS 40.0%
TTGATCTATCACCAGCAAGT+TGG - Chr4:33705318-33705337 MsG0480020085.01.T01:CDS 40.0%
TTGCTGGGTAAAATGTTCGT+GGG + Chr4:33704139-33704158 None:intergenic 40.0%
! ATGAAAGTGTGTGGTAAGTG+AGG + Chr4:33705624-33705643 None:intergenic 40.0%
! ATTCTGGTGATAGTGAGACA+AGG - Chr4:33703392-33703411 MsG0480020085.01.T01:intron 40.0%
! TTCTGGTGATAGTGAGACAA+GGG - Chr4:33703393-33703412 MsG0480020085.01.T01:intron 40.0%
!! CTTTTAAGTGACATCAACCC+TGG + Chr4:33705296-33705315 None:intergenic 40.0%
!! GTTTTGTTCCATCAGTTTCG+TGG - Chr4:33704636-33704655 MsG0480020085.01.T01:intron 40.0%
!! TAGCACAACCGTTGATTCTA+TGG - Chr4:33705182-33705201 MsG0480020085.01.T01:intron 40.0%
CATCTGAGCAAGATAGTCTC+TGG - Chr4:33703485-33703504 MsG0480020085.01.T01:intron 45.0%
CTGGCATTTGAATGACCGAT+TGG - Chr4:33703504-33703523 MsG0480020085.01.T01:intron 45.0%
GCTATGGACATCATCAGAAG+AGG - Chr4:33703459-33703478 MsG0480020085.01.T01:intron 45.0%
GGTTAGCAGAAAGATACCCA+GGG - Chr4:33705276-33705295 MsG0480020085.01.T01:CDS 45.0%
GTCCCTCCCTTTCAGATTAA+TGG - Chr4:33705254-33705273 MsG0480020085.01.T01:CDS 45.0%
GTGTTGGAGTGTGTTTGATG+TGG - Chr4:33705005-33705024 MsG0480020085.01.T01:CDS 45.0%
GTTGGAGTGTGTTTGATGTG+GGG - Chr4:33705007-33705026 MsG0480020085.01.T01:CDS 45.0%
! TCTATCACCAGCAAGTTGGA+TGG - Chr4:33705322-33705341 MsG0480020085.01.T01:CDS 45.0%
! TTCGATGAATGGAGTGCCTA+TGG - Chr4:33703164-33703183 MsG0480020085.01.T01:CDS 45.0%
!! ACTAAAAATTTAAATTTATA+AGG - Chr4:33704814-33704833 MsG0480020085.01.T01:intron 5.0%
GATTGGAACTCCAACGCCAT+AGG + Chr4:33703183-33703202 None:intergenic 50.0%
! CAAGTTGGATGGCAGTTGCT+TGG - Chr4:33705333-33705352 MsG0480020085.01.T01:CDS 50.0%
! GGGTTAGCAGAAAGATACCC+AGG - Chr4:33705275-33705294 MsG0480020085.01.T01:CDS 50.0%
GCAACTGCCATCCAACTTGC+TGG + Chr4:33705332-33705351 None:intergenic 55.0%
! GAATGGAGTGCCTATGGCGT+TGG - Chr4:33703170-33703189 MsG0480020085.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr4 gene 33702801 33705696 33702801 ID=MsG0480020085.01;Name=MsG0480020085.01
Chr4 mRNA 33702801 33705696 33702801 ID=MsG0480020085.01.T01;Parent=MsG0480020085.01;Name=MsG0480020085.01.T01;_AED=0.50;_eAED=0.50;_QI=92|0.75|0.6|1|0.75|0.8|5|0|238
Chr4 exon 33705521 33705696 33705521 ID=MsG0480020085.01.T01:exon:2737;Parent=MsG0480020085.01.T01
Chr4 exon 33705212 33705414 33705212 ID=MsG0480020085.01.T01:exon:2738;Parent=MsG0480020085.01.T01
Chr4 exon 33704906 33705116 33704906 ID=MsG0480020085.01.T01:exon:2739;Parent=MsG0480020085.01.T01
Chr4 exon 33703143 33703228 33703143 ID=MsG0480020085.01.T01:exon:2740;Parent=MsG0480020085.01.T01
Chr4 exon 33702801 33702933 33702801 ID=MsG0480020085.01.T01:exon:2741;Parent=MsG0480020085.01.T01
Chr4 five_prime_UTR 33705605 33705696 33705605 ID=MsG0480020085.01.T01:five_prime_utr;Parent=MsG0480020085.01.T01
Chr4 CDS 33705521 33705604 33705521 ID=MsG0480020085.01.T01:cds;Parent=MsG0480020085.01.T01
Chr4 CDS 33705212 33705414 33705212 ID=MsG0480020085.01.T01:cds;Parent=MsG0480020085.01.T01
Chr4 CDS 33704906 33705116 33704906 ID=MsG0480020085.01.T01:cds;Parent=MsG0480020085.01.T01
Chr4 CDS 33703143 33703228 33703143 ID=MsG0480020085.01.T01:cds;Parent=MsG0480020085.01.T01
Chr4 CDS 33702801 33702933 33702801 ID=MsG0480020085.01.T01:cds;Parent=MsG0480020085.01.T01
Gene Sequence

>MsG0480020085.01.T01

ATGAGGTCAATGCAATCTAGGTCTAACCTTGATTGCTTTCTTCACCATACAACACCTATTGTACCATCTAAGTTTCTACAAAAGATTAGAAACCTTAACCGTTTATGGAATCCGTGTGATAGAGAAACAGTTGAATATTTCACTCTGAGTGATCTTTGGAATTGTTTCGATGAATGGAGTGCCTATGGCGTTGGAGTTCCAATCAACTTTAAAAATGAGGAGACACTTGTCCAATACTATGTTCCTTACCTCTCTGCAATTCAAATATTTACAAGCAATAATTTCAGAGAAGAGATTGATTCTGGTGATAGTGAGACAAGGGATTCGTTTAGCGATTCTTACAGCGATGATAGCGAGTGTGATAAGCTATGGACATCATCAGAAGAGGGAGCATCTGAGCAAGATAGTCTCTGGCATTTGAATGACCGATTGGGTCATCTTTATTTCCAGTATTTTGAAAAATCAACTCCATATGGAAGAGTTCCTCTAATTGATAAGATTAATGGGTTAGCAGAAAGATACCCAGGGTTGATGTCACTTAAAAGTGTTGATCTATCACCAGCAAGTTGGATGGCAGTTGCTTGGTACCCGATATATCATATTCCCATGGGAAGAACAATTAAAGATCTTTCAACATGTTTCCTCACTTACCACACACTTTCATCTTCATTTCAAGGTATTCCTTATACATGTTTGGAATTGGATTATTTAATTTAA

Protein sequence

>MsG0480020085.01.T01

MRSMQSRSNLDCFLHHTTPIVPSKFLQKIRNLNRLWNPCDRETVEYFTLSDLWNCFDEWSAYGVGVPINFKNEETLVQYYVPYLSAIQIFTSNNFREEIDSGDSETRDSFSDSYSDDSECDKLWTSSEEGASEQDSLWHLNDRLGHLYFQYFEKSTPYGRVPLIDKINGLAERYPGLMSLKSVDLSPASWMAVAWYPIYHIPMGRTIKDLSTCFLTYHTLSSSFQGIPYTCLELDYLI*