Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480020085.01.T01 | XP_013455499.1 | 96.07 | 229 | 6 | 2 | 1 | 227 | 1 | 228 | 1.38E-159 | 454 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480020085.01.T01 | A0A072UUJ2 | 96.070 | 229 | 6 | 2 | 1 | 227 | 1 | 228 | 6.60e-160 | 454 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048205.01 | MsG0480020085.01 | 0.827722 | 1.337453e-54 | 1.301886e-51 |
MsG0080048207.01 | MsG0480020085.01 | 0.803093 | 4.108971e-49 | 2.046532e-46 |
MsG0180000220.01 | MsG0480020085.01 | 0.858828 | 6.300572e-63 | 1.629487e-59 |
MsG0180000271.01 | MsG0480020085.01 | 0.809597 | 1.749001e-50 | 1.031288e-47 |
MsG0180001663.01 | MsG0480020085.01 | 0.829300 | 5.561458e-55 | 5.670148e-52 |
MsG0180002912.01 | MsG0480020085.01 | 0.806501 | 7.978694e-50 | 4.337511e-47 |
MsG0180003864.01 | MsG0480020085.01 | 0.811432 | 7.020544e-51 | 4.345192e-48 |
MsG0180004462.01 | MsG0480020085.01 | 0.805745 | 1.150816e-49 | 6.137079e-47 |
MsG0180004996.01 | MsG0480020085.01 | 0.811321 | 7.420843e-51 | 4.579215e-48 |
MsG0180005813.01 | MsG0480020085.01 | 0.836020 | 1.195404e-56 | 1.487523e-53 |
MsG0180005842.01 | MsG0480020085.01 | 0.802866 | 4.577697e-49 | 2.267024e-46 |
MsG0180006016.01 | MsG0480020085.01 | 0.826376 | 2.807390e-54 | 2.628316e-51 |
MsG0180006138.01 | MsG0480020085.01 | 0.800824 | 1.202069e-48 | 5.652166e-46 |
MsG0280006356.01 | MsG0480020085.01 | 0.816943 | 4.260402e-52 | 3.061177e-49 |
MsG0280010739.01 | MsG0480020085.01 | 0.801622 | 8.253073e-49 | 3.959597e-46 |
MsG0280011032.01 | MsG0480020085.01 | 0.813028 | 3.149342e-51 | 2.033826e-48 |
MsG0280011446.01 | MsG0480020085.01 | 0.842148 | 3.086183e-58 | 4.636664e-55 |
MsG0380011870.01 | MsG0480020085.01 | 0.807031 | 6.166077e-50 | 3.398243e-47 |
MsG0380012650.01 | MsG0480020085.01 | 0.801302 | 9.600616e-49 | 4.569286e-46 |
MsG0380014177.01 | MsG0480020085.01 | 0.820389 | 7.037240e-53 | 5.561101e-50 |
MsG0380014561.01 | MsG0480020085.01 | 0.800137 | 1.659430e-48 | 7.668028e-46 |
MsG0380014573.01 | MsG0480020085.01 | 0.837059 | 6.496770e-57 | 8.341785e-54 |
MsG0480018659.01 | MsG0480020085.01 | 0.832914 | 7.203173e-56 | 8.165962e-53 |
MsG0480018660.01 | MsG0480020085.01 | 0.831780 | 1.374446e-55 | 1.506989e-52 |
MsG0480019434.01 | MsG0480020085.01 | 0.806784 | 6.953489e-50 | 3.807686e-47 |
MsG0480019816.01 | MsG0480020085.01 | 0.800170 | 1.634157e-48 | 7.557323e-46 |
MsG0480020085.01 | MsG0480020090.01 | 0.820373 | 7.098401e-53 | 5.606760e-50 |
MsG0480020085.01 | MsG0480020445.01 | 0.822345 | 2.489945e-53 | 2.078628e-50 |
MsG0480020085.01 | MsG0480020886.01 | 0.803309 | 3.708023e-49 | 1.857119e-46 |
MsG0480020085.01 | MsG0480021464.01 | 0.833894 | 4.101873e-56 | 4.789318e-53 |
MsG0480020085.01 | MsG0480022222.01 | 0.800172 | 1.632335e-48 | 7.549301e-46 |
MsG0480020085.01 | MsG0480023088.01 | 0.820764 | 5.773483e-53 | 4.609805e-50 |
MsG0480020085.01 | MsG0480023224.01 | 0.801527 | 8.631705e-49 | 4.131513e-46 |
MsG0480020085.01 | MsG0480023427.01 | 0.811224 | 7.791873e-51 | 4.796039e-48 |
MsG0480020085.01 | MsG0580024073.01 | 0.811405 | 7.116384e-51 | 4.401448e-48 |
MsG0480020085.01 | MsG0580025758.01 | 0.842024 | 3.327345e-58 | 4.979507e-55 |
MsG0480020085.01 | MsG0580026047.01 | 0.832413 | 9.587336e-56 | 1.070865e-52 |
MsG0480020085.01 | MsG0580027129.01 | 0.806500 | 7.982268e-50 | 4.339392e-47 |
MsG0480020085.01 | MsG0580027228.01 | 0.822283 | 2.573755e-53 | 2.144815e-50 |
MsG0480020085.01 | MsG0580027344.01 | 0.806213 | 9.173058e-50 | 4.950682e-47 |
MsG0480020085.01 | MsG0580027345.01 | 0.811241 | 7.726055e-51 | 4.757595e-48 |
MsG0480020085.01 | MsG0580029758.01 | 0.806699 | 7.247629e-50 | 3.960037e-47 |
MsG0480020085.01 | MsG0680030316.01 | 0.850579 | 1.549620e-60 | 3.049430e-57 |
MsG0480020085.01 | MsG0680030415.01 | 0.801490 | 8.787130e-49 | 4.201948e-46 |
MsG0480020085.01 | MsG0680030839.01 | 0.801991 | 6.933185e-49 | 3.357675e-46 |
MsG0480020085.01 | MsG0680033339.01 | 0.803499 | 3.386144e-49 | 1.704326e-46 |
MsG0480020085.01 | MsG0680034190.01 | 0.808224 | 3.439414e-50 | 1.955642e-47 |
MsG0480020085.01 | MsG0680034219.01 | 0.831675 | 1.459619e-55 | 1.595164e-52 |
MsG0480020085.01 | MsG0680034450.01 | 0.800864 | 1.180145e-48 | 5.554867e-46 |
MsG0480020085.01 | MsG0680035582.01 | 0.818093 | 2.346505e-52 | 1.739699e-49 |
MsG0480020085.01 | MsG0680035694.01 | 0.804327 | 2.278687e-49 | 1.171525e-46 |
MsG0480020085.01 | MsG0780038827.01 | 0.817225 | 3.682892e-52 | 2.666386e-49 |
MsG0480020085.01 | MsG0780038911.01 | 0.837977 | 3.779749e-57 | 4.992301e-54 |
MsG0480020085.01 | MsG0780038921.01 | 0.806228 | 9.107495e-50 | 4.917203e-47 |
MsG0480020085.01 | MsG0780039143.01 | 0.837437 | 5.202370e-57 | 6.757399e-54 |
MsG0480020085.01 | MsG0780040442.01 | 0.852720 | 3.836574e-61 | 8.090328e-58 |
MsG0480020085.01 | MsG0780040749.01 | 0.810292 | 1.239594e-50 | 7.443010e-48 |
MsG0480020085.01 | MsG0880042065.01 | 0.802460 | 5.551203e-49 | 2.720811e-46 |
MsG0480020085.01 | MsG0880042294.01 | 0.812408 | 4.304878e-51 | 2.735037e-48 |
MsG0480020085.01 | MsG0880042404.01 | 0.806052 | 9.918866e-50 | 5.331046e-47 |
MsG0480020085.01 | MsG0880043144.01 | 0.820946 | 5.241812e-53 | 4.206852e-50 |
MsG0480020085.01 | MsG0880043291.01 | 0.800683 | 1.284672e-48 | 6.018977e-46 |
MsG0480020085.01 | MsG0880043303.01 | 0.834652 | 2.648697e-56 | 3.163270e-53 |
MsG0480020085.01 | MsG0880043591.01 | 0.827536 | 1.481669e-54 | 1.434429e-51 |
MsG0480020085.01 | MsG0880045290.01 | 0.838803 | 2.315036e-57 | 3.135409e-54 |
MsG0480020085.01 | MsG0880046077.01 | 0.813447 | 2.548372e-51 | 1.664668e-48 |
MsG0480020085.01 | MsG0880046088.01 | 0.808362 | 3.215103e-50 | 1.834758e-47 |
MsG0480020085.01 | MsG0880047019.01 | 0.806559 | 7.754983e-50 | 4.222349e-47 |
MsG0380015400.01 | MsG0480020085.01 | 0.806769 | 7.001927e-50 | 3.832817e-47 |
MsG0380015538.01 | MsG0480020085.01 | 0.803447 | 3.471179e-49 | 1.744750e-46 |
MsG0380016244.01 | MsG0480020085.01 | 0.808045 | 3.754965e-50 | 2.124870e-47 |
MsG0380016475.01 | MsG0480020085.01 | 0.815385 | 9.499094e-52 | 6.539641e-49 |
MsG0380016581.01 | MsG0480020085.01 | 0.826847 | 2.166750e-54 | 2.055916e-51 |
MsG0380016624.01 | MsG0480020085.01 | 0.824055 | 9.928866e-54 | 8.698783e-51 |
MsG0380017286.01 | MsG0480020085.01 | 0.823985 | 1.031069e-53 | 9.016060e-51 |
MsG0380017326.01 | MsG0480020085.01 | 0.801706 | 7.933888e-49 | 3.814572e-46 |
MsG0380017403.01 | MsG0480020085.01 | 0.827163 | 1.820452e-54 | 1.743459e-51 |
MsG0380017543.01 | MsG0480020085.01 | 0.815342 | 9.708230e-52 | 6.675907e-49 |
MsG0380017680.01 | MsG0480020085.01 | 0.813618 | 2.336472e-51 | 1.533324e-48 |
MsG0280006595.01 | MsG0480020085.01 | 0.821848 | 3.246250e-53 | 2.671861e-50 |
MsG0280007564.01 | MsG0480020085.01 | 0.815191 | 1.048957e-51 | 7.182857e-49 |
MsG0280007610.01 | MsG0480020085.01 | 0.820221 | 7.689832e-53 | 6.048106e-50 |
MsG0280007815.01 | MsG0480020085.01 | 0.812310 | 4.522067e-51 | 2.865340e-48 |
MsG0280008073.01 | MsG0480020085.01 | 0.837681 | 4.503576e-57 | 5.894712e-54 |
MsG0280009024.01 | MsG0480020085.01 | 0.823909 | 1.074655e-53 | 9.377452e-51 |
MsG0280010204.01 | MsG0480020085.01 | 0.820576 | 6.376630e-53 | 5.064606e-50 |
MsG0280010389.01 | MsG0480020085.01 | 0.802068 | 6.684696e-49 | 3.243813e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480020085.01.T01 | MTR_4g044297 | 96.070 | 229 | 6 | 2 | 1 | 227 | 1 | 228 | 1.67e-163 | 454 |
MsG0480020085.01.T01 | MTR_2g090210 | 78.761 | 226 | 42 | 2 | 8 | 227 | 10 | 235 | 1.56e-128 | 366 |
MsG0480020085.01.T01 | MTR_6g066280 | 47.685 | 216 | 82 | 3 | 33 | 225 | 12 | 219 | 6.31e-60 | 192 |
MsG0480020085.01.T01 | MTR_6g082450 | 40.613 | 261 | 111 | 4 | 3 | 226 | 67 | 320 | 1.24e-55 | 183 |
MsG0480020085.01.T01 | MTR_1g077460 | 46.414 | 237 | 105 | 6 | 9 | 225 | 13 | 247 | 5.14e-55 | 179 |
MsG0480020085.01.T01 | MTR_4g120990 | 40.377 | 265 | 124 | 6 | 2 | 236 | 65 | 325 | 1.55e-54 | 180 |
MsG0480020085.01.T01 | MTR_1g110070 | 40.316 | 253 | 109 | 5 | 8 | 226 | 89 | 333 | 8.59e-53 | 176 |
MsG0480020085.01.T01 | MTR_2g035080 | 38.824 | 255 | 120 | 6 | 3 | 225 | 73 | 323 | 8.48e-47 | 160 |
MsG0480020085.01.T01 | MTR_1g087830 | 36.585 | 205 | 90 | 4 | 18 | 222 | 65 | 229 | 8.13e-38 | 134 |
MsG0480020085.01.T01 | MTR_1g087810 | 36.898 | 187 | 88 | 3 | 39 | 225 | 83 | 239 | 1.74e-32 | 120 |
MsG0480020085.01.T01 | MTR_6g044130 | 67.347 | 49 | 15 | 1 | 178 | 225 | 1 | 49 | 1.47e-13 | 65.9 |
MsG0480020085.01.T01 | MTR_6g077930 | 30.000 | 220 | 94 | 9 | 38 | 220 | 812 | 1008 | 2.13e-13 | 69.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480020085.01.T01 | AT1G03610 | 66.387 | 238 | 66 | 4 | 1 | 232 | 4 | 233 | 5.93e-107 | 309 |
MsG0480020085.01.T01 | AT4G03420 | 71.875 | 224 | 59 | 2 | 8 | 227 | 7 | 230 | 5.62e-105 | 306 |
MsG0480020085.01.T01 | AT1G03610 | 66.524 | 233 | 64 | 4 | 1 | 227 | 4 | 228 | 1.16e-103 | 303 |
MsG0480020085.01.T01 | AT4G28150 | 62.712 | 236 | 64 | 4 | 1 | 227 | 1 | 221 | 3.83e-94 | 278 |
MsG0480020085.01.T01 | AT4G28150 | 62.185 | 238 | 64 | 5 | 1 | 227 | 1 | 223 | 3.83e-92 | 273 |
MsG0480020085.01.T01 | AT1G17830 | 53.556 | 239 | 94 | 6 | 3 | 226 | 13 | 249 | 4.95e-72 | 223 |
MsG0480020085.01.T01 | AT4G28150 | 58.252 | 206 | 60 | 5 | 1 | 195 | 1 | 191 | 6.18e-70 | 213 |
MsG0480020085.01.T01 | AT1G73210 | 50.855 | 234 | 93 | 4 | 3 | 225 | 7 | 229 | 2.65e-69 | 215 |
MsG0480020085.01.T01 | AT1G73210 | 50.427 | 234 | 96 | 4 | 3 | 225 | 7 | 231 | 1.02e-68 | 214 |
MsG0480020085.01.T01 | AT1G73210 | 50.427 | 234 | 96 | 4 | 3 | 225 | 7 | 231 | 1.02e-68 | 214 |
MsG0480020085.01.T01 | AT2G01260 | 41.322 | 242 | 118 | 4 | 6 | 228 | 62 | 298 | 8.44e-51 | 168 |
MsG0480020085.01.T01 | AT4G16100 | 43.290 | 231 | 114 | 6 | 9 | 226 | 88 | 314 | 3.52e-50 | 169 |
MsG0480020085.01.T01 | AT1G15030 | 41.463 | 246 | 120 | 6 | 3 | 226 | 42 | 285 | 4.02e-50 | 166 |
MsG0480020085.01.T01 | AT2G01260 | 41.250 | 240 | 117 | 4 | 6 | 226 | 62 | 296 | 2.13e-49 | 166 |
MsG0480020085.01.T01 | AT1G15030 | 41.463 | 246 | 120 | 6 | 3 | 226 | 42 | 285 | 2.20e-49 | 166 |
MsG0480020085.01.T01 | AT5G49220 | 40.254 | 236 | 123 | 5 | 2 | 223 | 101 | 332 | 5.55e-47 | 160 |
MsG0480020085.01.T01 | AT5G23380 | 36.564 | 227 | 125 | 4 | 7 | 226 | 6 | 220 | 1.30e-31 | 116 |
MsG0480020085.01.T01 | AT5G23380 | 36.564 | 227 | 125 | 4 | 7 | 226 | 6 | 220 | 1.30e-31 | 116 |
MsG0480020085.01.T01 | AT5G23380 | 37.445 | 227 | 119 | 5 | 7 | 224 | 6 | 218 | 7.14e-30 | 113 |
MsG0480020085.01.T01 | AT2G01260 | 35.359 | 181 | 93 | 4 | 6 | 167 | 62 | 237 | 1.43e-22 | 93.2 |
Find 53 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTAGAAACCTTAACCGTTTA+TGG | 0.049207 | 4:-33705391 | MsG0480020085.01.T01:CDS |
GTCCCTCCCTTTCAGATTAA+TGG | 0.178578 | 4:-33703221 | MsG0480020085.01.T01:intron |
ATTTCACTCTGAGTGATCTT+TGG | 0.265625 | 4:-33705340 | MsG0480020085.01.T01:CDS |
TTCAGAGAAGAGATTGATTC+TGG | 0.274830 | 4:-33705099 | MsG0480020085.01.T01:intron |
TCCTTATACATGTTTGGAAT+TGG | 0.275884 | 4:-33702815 | MsG0480020085.01.T01:CDS |
TCCAATTCCAAACATGTATA+AGG | 0.300888 | 4:+33702814 | None:intergenic |
TATTTACAAGCAATAATTTC+AGG | 0.321189 | 4:-33705211 | MsG0480020085.01.T01:intron |
AAATTTACCTTATCAATTAG+AGG | 0.328507 | 4:+33704898 | None:intergenic |
TTTGGAATTGTTTCGATGAA+TGG | 0.331760 | 4:-33705322 | MsG0480020085.01.T01:CDS |
CCCATGGGAATATGATATAT+CGG | 0.340823 | 4:+33702907 | None:intergenic |
TCCCTCCCTTTCAGATTAAT+GGG | 0.345433 | 4:-33703220 | MsG0480020085.01.T01:intron |
ACACTTTCATCTTCATTTCA+AGG | 0.353986 | 4:-33702841 | MsG0480020085.01.T01:CDS |
AGGTATTCCTTATACATGTT+TGG | 0.369532 | 4:-33702821 | MsG0480020085.01.T01:CDS |
GCAACTGCCATCCAACTTGC+TGG | 0.415630 | 4:+33703146 | None:intergenic |
ACCATCTAAGTTTCTACAAA+AGG | 0.419530 | 4:-33705520 | MsG0480020085.01.T01:intron |
TATCACACGGATTCCATAAA+CGG | 0.423998 | 4:+33705378 | None:intergenic |
ACGGATTCCATAAACGGTTA+AGG | 0.435111 | 4:+33705384 | None:intergenic |
CAATGAGGTCAATGCAATCT+AGG | 0.444961 | 4:-33705584 | MsG0480020085.01.T01:CDS |
AGAAACTTAGATGGTACAAT+AGG | 0.450966 | 4:+33705528 | None:intergenic |
ATTAGAGGAACTCTTCCATA+TGG | 0.461032 | 4:+33704913 | None:intergenic |
ATCTTTAATTGTTCTTCCCA+TGG | 0.468483 | 4:+33702891 | None:intergenic |
CTGGCATTTGAATGACCGAT+TGG | 0.470292 | 4:-33704971 | MsG0480020085.01.T01:CDS |
AAGAGTTCCTCTAATTGATA+AGG | 0.483084 | 4:-33704905 | MsG0480020085.01.T01:intron |
CCATGGGAATATGATATATC+GGG | 0.486988 | 4:+33702908 | None:intergenic |
ATTTGAATTGCAGAGAGGTA+AGG | 0.504614 | 4:+33705233 | None:intergenic |
CAAGTTGGATGGCAGTTGCT+TGG | 0.508186 | 4:-33703142 | MsG0480020085.01.T01:intron |
TCTTTAATTGTTCTTCCCAT+GGG | 0.512415 | 4:+33702892 | None:intergenic |
CATCTGAGCAAGATAGTCTC+TGG | 0.520611 | 4:-33704990 | MsG0480020085.01.T01:CDS |
TGGCATTTGAATGACCGATT+GGG | 0.527348 | 4:-33704970 | MsG0480020085.01.T01:CDS |
TATGGTGAAGAAAGCAATCA+AGG | 0.530917 | 4:+33705556 | None:intergenic |
AGAGGTAAGGAACATAGTAT+TGG | 0.534665 | 4:+33705246 | None:intergenic |
CCCGATATATCATATTCCCA+TGG | 0.539980 | 4:-33702908 | MsG0480020085.01.T01:CDS |
ATAGCGAGTGTGATAAGCTA+TGG | 0.542399 | 4:-33705032 | MsG0480020085.01.T01:CDS |
GGAAATAAAGATGACCCAAT+CGG | 0.546064 | 4:+33704956 | None:intergenic |
TTCGATGAATGGAGTGCCTA+TGG | 0.551127 | 4:-33705311 | MsG0480020085.01.T01:CDS |
TTGATCTATCACCAGCAAGT+TGG | 0.551938 | 4:-33703157 | MsG0480020085.01.T01:CDS |
ATGGTACAATAGGTGTTGTA+TGG | 0.558926 | 4:+33705538 | None:intergenic |
TTGACCTCATTGTATATCAA+AGG | 0.560370 | 4:+33705595 | None:intergenic |
TCTTCCTTTGATATACAATG+AGG | 0.561900 | 4:-33705599 | MsG0480020085.01.T01:exon |
GGGTTAGCAGAAAGATACCC+AGG | 0.563766 | 4:-33703200 | MsG0480020085.01.T01:CDS |
GATTGGAACTCCAACGCCAT+AGG | 0.589508 | 4:+33705295 | None:intergenic |
GAATGGAGTGCCTATGGCGT+TGG | 0.591581 | 4:-33705305 | MsG0480020085.01.T01:CDS |
CTATGGACATCATCAGAAGA+GGG | 0.597455 | 4:-33705015 | MsG0480020085.01.T01:CDS |
CCGATATATCATATTCCCAT+GGG | 0.601439 | 4:-33702907 | MsG0480020085.01.T01:CDS |
ATGAAAGTGTGTGGTAAGTG+AGG | 0.614288 | 4:+33702854 | None:intergenic |
GCTATGGACATCATCAGAAG+AGG | 0.617480 | 4:-33705016 | MsG0480020085.01.T01:CDS |
TCAACTGTTTCTCTATCACA+CGG | 0.620809 | 4:+33705365 | None:intergenic |
TCTATCACCAGCAAGTTGGA+TGG | 0.627514 | 4:-33703153 | MsG0480020085.01.T01:CDS |
TTCTGGTGATAGTGAGACAA+GGG | 0.640927 | 4:-33705082 | MsG0480020085.01.T01:CDS |
TAAATATTTGAATTGCAGAG+AGG | 0.649675 | 4:+33705228 | None:intergenic |
ATTCTGGTGATAGTGAGACA+AGG | 0.671618 | 4:-33705083 | MsG0480020085.01.T01:CDS |
GGTTAGCAGAAAGATACCCA+GGG | 0.695930 | 4:-33703199 | MsG0480020085.01.T01:CDS |
GAAATGAAGATGAAAGTGTG+TGG | 0.729995 | 4:+33702845 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTTTATCTTTTTTTTCT+GGG | - | Chr4:33703923-33703942 | MsG0480020085.01.T01:intron | 10.0% |
!!! | TTTATTTTATCTTTTTTTTC+TGG | - | Chr4:33703922-33703941 | MsG0480020085.01.T01:intron | 10.0% |
!! | AAAAGTTAATCACTTAAAAT+TGG | - | Chr4:33704892-33704911 | MsG0480020085.01.T01:intron | 15.0% |
!! | AATAAACCAAAAATCATAAA+AGG | + | Chr4:33703008-33703027 | None:intergenic | 15.0% |
!! | AGTCCATAATAAAATAAAAT+AGG | + | Chr4:33704514-33704533 | None:intergenic | 15.0% |
!! | ATGACAATTATAAAAGATTA+AGG | + | Chr4:33705397-33705416 | None:intergenic | 15.0% |
!! | ATTTAAATTTATAAGGTAAG+AGG | - | Chr4:33704821-33704840 | MsG0480020085.01.T01:intron | 15.0% |
!! | CATAATAAAATAAAATAGGT+GGG | + | Chr4:33704510-33704529 | None:intergenic | 15.0% |
!! | GTTAACATTATAATATTTCA+AGG | - | Chr4:33704031-33704050 | MsG0480020085.01.T01:intron | 15.0% |
!! | TTAAAAATAGGGAATATAAT+AGG | - | Chr4:33704058-33704077 | MsG0480020085.01.T01:intron | 15.0% |
!! | TTGAAAAAATCAATCTAATT+TGG | + | Chr4:33704611-33704630 | None:intergenic | 15.0% |
!!! | AAAGATAGAATTTTATTCTA+AGG | - | Chr4:33703987-33704006 | MsG0480020085.01.T01:intron | 15.0% |
!!! | AAATTTTTAATCTATGGATT+AGG | - | Chr4:33703725-33703744 | MsG0480020085.01.T01:intron | 15.0% |
!!! | AGTGAATTTCATTTTAATAA+AGG | - | Chr4:33704850-33704869 | MsG0480020085.01.T01:intron | 15.0% |
!!! | ATTTTTACTAATAGAATCAA+CGG | + | Chr4:33705193-33705212 | None:intergenic | 15.0% |
!!! | TATTATATTCCCTATTTTTA+AGG | + | Chr4:33704059-33704078 | None:intergenic | 15.0% |
!!! | TTTTTTATTTTTCAAACACT+CGG | + | Chr4:33704747-33704766 | None:intergenic | 15.0% |
!!! | TTTTTTCCTTTTATGATTTT+TGG | - | Chr4:33702999-33703018 | MsG0480020085.01.T01:intron | 15.0% |
!! | AAAGAACTTGAGATTTAAAT+CGG | - | Chr4:33704265-33704284 | MsG0480020085.01.T01:intron | 20.0% |
!! | AAATTTACCTTATCAATTAG+AGG | + | Chr4:33703580-33703599 | None:intergenic | 20.0% |
!! | AAGTTTACTAAATTTATTGC+TGG | + | Chr4:33704155-33704174 | None:intergenic | 20.0% |
!! | AATGGTTAAATTAGTACATT+TGG | - | Chr4:33705441-33705460 | MsG0480020085.01.T01:intron | 20.0% |
!! | AATTAGTATAAGTTATAGCA+AGG | + | Chr4:33705374-33705393 | None:intergenic | 20.0% |
!! | AATTCTATCTTTATATTCCT+AGG | + | Chr4:33703979-33703998 | None:intergenic | 20.0% |
!! | AGAAACATGTGATTAAAAAA+TGG | + | Chr4:33703667-33703686 | None:intergenic | 20.0% |
!! | AGTTTACTAAATTTATTGCT+GGG | + | Chr4:33704154-33704173 | None:intergenic | 20.0% |
!! | ATCATAAAAGGAAAAAAGAA+TGG | + | Chr4:33702996-33703015 | None:intergenic | 20.0% |
!! | CAATGAAAATTACAAAGATA+AGG | + | Chr4:33704428-33704447 | None:intergenic | 20.0% |
!! | CCATAATAAAATAAAATAGG+TGG | + | Chr4:33704511-33704530 | None:intergenic | 20.0% |
!! | CTAGACAATAATTTAAGTAA+AGG | + | Chr4:33704485-33704504 | None:intergenic | 20.0% |
!! | CTTTACTTAAATTATTGTCT+AGG | - | Chr4:33704483-33704502 | MsG0480020085.01.T01:intron | 20.0% |
!! | GTATTTAGAAAAAAGATGTT+TGG | - | Chr4:33704009-33704028 | MsG0480020085.01.T01:intron | 20.0% |
!! | GTGTTTGAAAAATAAAAAAG+AGG | - | Chr4:33704748-33704767 | MsG0480020085.01.T01:intron | 20.0% |
!! | TATTTACAAGCAATAATTTC+AGG | - | Chr4:33703264-33703283 | MsG0480020085.01.T01:intron | 20.0% |
!!! | AAGATTTTAAGCACTAATTT+AGG | - | Chr4:33705139-33705158 | MsG0480020085.01.T01:intron | 20.0% |
!!! | AGTAGGAAATTTTTAATCTA+TGG | - | Chr4:33703719-33703738 | MsG0480020085.01.T01:intron | 20.0% |
!!! | ATGTACTAAATTTTCATGTT+TGG | - | Chr4:33705476-33705495 | MsG0480020085.01.T01:intron | 20.0% |
!!! | CATTTTTCTTTAATTAGTGA+AGG | - | Chr4:33705414-33705433 | MsG0480020085.01.T01:intron | 20.0% |
!!! | CCACCTATTTTATTTTATTA+TGG | - | Chr4:33704508-33704527 | MsG0480020085.01.T01:intron | 20.0% |
!!! | GATATATTTTCAATCAAATC+GGG | - | Chr4:33704658-33704677 | MsG0480020085.01.T01:intron | 20.0% |
!!! | GGATATATTTTCAATCAAAT+CGG | - | Chr4:33704657-33704676 | MsG0480020085.01.T01:intron | 20.0% |
!!! | TCTTTGTAATTTTCATTGAT+TGG | - | Chr4:33704430-33704449 | MsG0480020085.01.T01:intron | 20.0% |
! | ACAAAAACATCACTATTTGT+TGG | - | Chr4:33704558-33704577 | MsG0480020085.01.T01:intron | 25.0% |
! | AGTGTATCAAATTTATTCCT+AGG | - | Chr4:33703959-33703978 | MsG0480020085.01.T01:intron | 25.0% |
! | CAAAAACATCACTATTTGTT+GGG | - | Chr4:33704559-33704578 | MsG0480020085.01.T01:intron | 25.0% |
! | GTACAAAGTGACAATTTATT+AGG | + | Chr4:33703838-33703857 | None:intergenic | 25.0% |
! | TAAATATTTGAATTGCAGAG+AGG | + | Chr4:33703250-33703269 | None:intergenic | 25.0% |
! | TTAATTAGTGAAGGTAGAAA+TGG | - | Chr4:33705423-33705442 | MsG0480020085.01.T01:intron | 25.0% |
! | TTCAAGGAACCTTAAAAATA+GGG | - | Chr4:33704047-33704066 | MsG0480020085.01.T01:intron | 25.0% |
! | TTTCAAGGAACCTTAAAAAT+AGG | - | Chr4:33704046-33704065 | MsG0480020085.01.T01:intron | 25.0% |
! | TTTGAAAAATCAACTCCATA+TGG | - | Chr4:33703547-33703566 | MsG0480020085.01.T01:intron | 25.0% |
!! | AAAAGTTTTCCCAAAGAAAA+TGG | + | Chr4:33704111-33704130 | None:intergenic | 25.0% |
!! | TCCAATCAACTTTAAAAATG+AGG | - | Chr4:33703196-33703215 | MsG0480020085.01.T01:CDS | 25.0% |
!!! | CATTGTTTTTTTCACAGTTT+TGG | + | Chr4:33704718-33704737 | None:intergenic | 25.0% |
!!! | GAGTTGATTTTTCAAAATAC+TGG | + | Chr4:33703543-33703562 | None:intergenic | 25.0% |
!!! | TACTCATGGTTGATATTTTT+AGG | - | Chr4:33705542-33705561 | MsG0480020085.01.T01:CDS | 25.0% |
!!! | TCCTCATTTTTAAAGTTGAT+TGG | + | Chr4:33703200-33703219 | None:intergenic | 25.0% |
AAATATATCCACGAAACTGA+TGG | + | Chr4:33704647-33704666 | None:intergenic | 30.0% | |
AAATGTTGTAGATCTTGTGA+TGG | - | Chr4:33705065-33705084 | MsG0480020085.01.T01:CDS | 30.0% | |
AAGAGTTCCTCTAATTGATA+AGG | - | Chr4:33703570-33703589 | MsG0480020085.01.T01:intron | 30.0% | |
ACACTTTCATCTTCATTTCA+AGG | - | Chr4:33705634-33705653 | MsG0480020085.01.T01:five_prime_UTR | 30.0% | |
ACCATCTAAGTTTCTACAAA+AGG | - | Chr4:33702955-33702974 | MsG0480020085.01.T01:intron | 30.0% | |
ACTGTGAAAAAAACAATGTG+AGG | - | Chr4:33704720-33704739 | MsG0480020085.01.T01:intron | 30.0% | |
AGAAACTTAGATGGTACAAT+AGG | + | Chr4:33702950-33702969 | None:intergenic | 30.0% | |
AGAGATAAGAACATAAGACT+AGG | + | Chr4:33703860-33703879 | None:intergenic | 30.0% | |
AGGTATTCCTTATACATGTT+TGG | - | Chr4:33705654-33705673 | MsG0480020085.01.T01:five_prime_UTR | 30.0% | |
AGTTCTTTACTTGTTCACTT+AGG | + | Chr4:33704253-33704272 | None:intergenic | 30.0% | |
ATCTTTAATTGTTCTTCCCA+TGG | + | Chr4:33705587-33705606 | None:intergenic | 30.0% | |
CAAAGGAAGAAAAAAGAACA+AGG | + | Chr4:33702866-33702885 | None:intergenic | 30.0% | |
CGCTATACTGTGAATTTATT+TGG | + | Chr4:33704961-33704980 | None:intergenic | 30.0% | |
CTTTGTAATGCAAGTTTGTA+AGG | - | Chr4:33704983-33705002 | MsG0480020085.01.T01:CDS | 30.0% | |
GATCAATTGATCAATACTCA+TGG | - | Chr4:33705528-33705547 | MsG0480020085.01.T01:CDS | 30.0% | |
GTTCTTATCTCTTTCTTAAG+TGG | - | Chr4:33703868-33703887 | MsG0480020085.01.T01:intron | 30.0% | |
GTTCTTTACTTGTTCACTTA+GGG | + | Chr4:33704252-33704271 | None:intergenic | 30.0% | |
TCCAATTCCAAACATGTATA+AGG | + | Chr4:33705664-33705683 | None:intergenic | 30.0% | |
TCTCTTTCTTAAGTGGAAAT+AGG | - | Chr4:33703875-33703894 | MsG0480020085.01.T01:intron | 30.0% | |
TCTTCCTTTGATATACAATG+AGG | - | Chr4:33702876-33702895 | MsG0480020085.01.T01:CDS | 30.0% | |
TCTTTAATTGTTCTTCCCAT+GGG | + | Chr4:33705586-33705605 | None:intergenic | 30.0% | |
TGATTCTATGGTTGACAAAT+TGG | - | Chr4:33705232-33705251 | MsG0480020085.01.T01:CDS | 30.0% | |
TTAGAAACCTTAACCGTTTA+TGG | - | Chr4:33703084-33703103 | MsG0480020085.01.T01:intron | 30.0% | |
TTGACCTCATTGTATATCAA+AGG | + | Chr4:33702883-33702902 | None:intergenic | 30.0% | |
TTTGTCAACCATAGAATCAA+CGG | + | Chr4:33705231-33705250 | None:intergenic | 30.0% | |
! | AAACCAAACAGCAAAAGTTT+TGG | + | Chr4:33704400-33704419 | None:intergenic | 30.0% |
! | ACCTTTTGTAGAAACTTAGA+TGG | + | Chr4:33702959-33702978 | None:intergenic | 30.0% |
! | ATTTTTCCCACCATTTTCTT+TGG | - | Chr4:33704098-33704117 | MsG0480020085.01.T01:intron | 30.0% |
! | TCCTTATACATGTTTGGAAT+TGG | - | Chr4:33705660-33705679 | MsG0480020085.01.T01:five_prime_UTR | 30.0% |
! | TTTGGAATTGTTTCGATGAA+TGG | - | Chr4:33703153-33703172 | MsG0480020085.01.T01:CDS | 30.0% |
! | TTTTTCCCACCATTTTCTTT+GGG | - | Chr4:33704099-33704118 | MsG0480020085.01.T01:intron | 30.0% |
!!! | AAAACTTTTGCTGTTTGGTT+TGG | - | Chr4:33704399-33704418 | MsG0480020085.01.T01:intron | 30.0% |
AAGATGAGAGTCCATAGATT+AGG | - | Chr4:33703690-33703709 | MsG0480020085.01.T01:intron | 35.0% | |
AATGCAAGTTTGTAAGGTGT+TGG | - | Chr4:33704989-33705008 | MsG0480020085.01.T01:CDS | 35.0% | |
ACGTTTGTCTTGTACATTGT+AGG | + | Chr4:33705043-33705062 | None:intergenic | 35.0% | |
AGAGGTAAGGAACATAGTAT+TGG | + | Chr4:33703232-33703251 | None:intergenic | 35.0% | |
AGTGACAATTTATTAGGCAG+AGG | + | Chr4:33703832-33703851 | None:intergenic | 35.0% | |
ATTAGAGGAACTCTTCCATA+TGG | + | Chr4:33703565-33703584 | None:intergenic | 35.0% | |
ATTTCACTCTGAGTGATCTT+TGG | - | Chr4:33703135-33703154 | MsG0480020085.01.T01:intron | 35.0% | |
ATTTGAATTGCAGAGAGGTA+AGG | + | Chr4:33703245-33703264 | None:intergenic | 35.0% | |
CCATGGGAATATGATATATC+GGG | + | Chr4:33705570-33705589 | None:intergenic | 35.0% | |
CCCATGGGAATATGATATAT+CGG | + | Chr4:33705571-33705590 | None:intergenic | 35.0% | |
CCGATATATCATATTCCCAT+GGG | - | Chr4:33705568-33705587 | MsG0480020085.01.T01:CDS | 35.0% | |
GCTAACCCATTAATCTGAAA+GGG | + | Chr4:33705263-33705282 | None:intergenic | 35.0% | |
GGAAATAAAGATGACCCAAT+CGG | + | Chr4:33703522-33703541 | None:intergenic | 35.0% | |
TATCACACGGATTCCATAAA+CGG | + | Chr4:33703100-33703119 | None:intergenic | 35.0% | |
TATGGTGAAGAAAGCAATCA+AGG | + | Chr4:33702922-33702941 | None:intergenic | 35.0% | |
TGCTAACCCATTAATCTGAA+AGG | + | Chr4:33705264-33705283 | None:intergenic | 35.0% | |
! | AGTTTTCCCAAAGAAAATGG+TGG | + | Chr4:33704108-33704127 | None:intergenic | 35.0% |
! | ATGGTACAATAGGTGTTGTA+TGG | + | Chr4:33702940-33702959 | None:intergenic | 35.0% |
! | CACAGAAGAAAAAGTGCATT+TGG | + | Chr4:33703318-33703337 | None:intergenic | 35.0% |
! | GAAATGAAGATGAAAGTGTG+TGG | + | Chr4:33705633-33705652 | None:intergenic | 35.0% |
! | GTTTTCCCAAAGAAAATGGT+GGG | + | Chr4:33704107-33704126 | None:intergenic | 35.0% |
! | TCAACTGTTTCTCTATCACA+CGG | + | Chr4:33703113-33703132 | None:intergenic | 35.0% |
! | TTCAGAGAAGAGATTGATTC+TGG | - | Chr4:33703376-33703395 | MsG0480020085.01.T01:intron | 35.0% |
! | TTGGGTTCTCATTTTCTTCA+AGG | - | Chr4:33702814-33702833 | MsG0480020085.01.T01:CDS | 35.0% |
!! | TTTTAAGTGACATCAACCCT+GGG | + | Chr4:33705295-33705314 | None:intergenic | 35.0% |
!!! | CAAACAGCAAAAGTTTTGGA+AGG | + | Chr4:33704396-33704415 | None:intergenic | 35.0% |
!!! | CTTCCAAAACTTTTGCTGTT+TGG | - | Chr4:33704394-33704413 | MsG0480020085.01.T01:intron | 35.0% |
!!! | GCACTTTTTCTTCTGTGATA+CGG | - | Chr4:33703321-33703340 | MsG0480020085.01.T01:intron | 35.0% |
AACCCATTAATCTGAAAGGG+AGG | + | Chr4:33705260-33705279 | None:intergenic | 40.0% | |
ACCCATTAATCTGAAAGGGA+GGG | + | Chr4:33705259-33705278 | None:intergenic | 40.0% | |
ACGGATTCCATAAACGGTTA+AGG | + | Chr4:33703094-33703113 | None:intergenic | 40.0% | |
ATAGCGAGTGTGATAAGCTA+TGG | - | Chr4:33703443-33703462 | MsG0480020085.01.T01:intron | 40.0% | |
ATTGCTGGGTAAAATGTTCG+TGG | + | Chr4:33704140-33704159 | None:intergenic | 40.0% | |
CAATGAGGTCAATGCAATCT+AGG | - | Chr4:33702891-33702910 | MsG0480020085.01.T01:CDS | 40.0% | |
CATAGATTAGGCAAAGCAGT+AGG | - | Chr4:33703702-33703721 | MsG0480020085.01.T01:intron | 40.0% | |
CCCGATATATCATATTCCCA+TGG | - | Chr4:33705567-33705586 | MsG0480020085.01.T01:CDS | 40.0% | |
CTACTGCTTTGCCTAATCTA+TGG | + | Chr4:33703704-33703723 | None:intergenic | 40.0% | |
CTATGGACATCATCAGAAGA+GGG | - | Chr4:33703460-33703479 | MsG0480020085.01.T01:intron | 40.0% | |
GCAGAGGAAAATGAGATTTC+TGG | + | Chr4:33703816-33703835 | None:intergenic | 40.0% | |
TCCCTCCCTTTCAGATTAAT+GGG | - | Chr4:33705255-33705274 | MsG0480020085.01.T01:CDS | 40.0% | |
TGGCATTTGAATGACCGATT+GGG | - | Chr4:33703505-33703524 | MsG0480020085.01.T01:intron | 40.0% | |
TGTTGGAGTGTGTTTGATGT+GGG | - | Chr4:33705006-33705025 | MsG0480020085.01.T01:CDS | 40.0% | |
TTGATCTATCACCAGCAAGT+TGG | - | Chr4:33705318-33705337 | MsG0480020085.01.T01:CDS | 40.0% | |
TTGCTGGGTAAAATGTTCGT+GGG | + | Chr4:33704139-33704158 | None:intergenic | 40.0% | |
! | ATGAAAGTGTGTGGTAAGTG+AGG | + | Chr4:33705624-33705643 | None:intergenic | 40.0% |
! | ATTCTGGTGATAGTGAGACA+AGG | - | Chr4:33703392-33703411 | MsG0480020085.01.T01:intron | 40.0% |
! | TTCTGGTGATAGTGAGACAA+GGG | - | Chr4:33703393-33703412 | MsG0480020085.01.T01:intron | 40.0% |
!! | CTTTTAAGTGACATCAACCC+TGG | + | Chr4:33705296-33705315 | None:intergenic | 40.0% |
!! | GTTTTGTTCCATCAGTTTCG+TGG | - | Chr4:33704636-33704655 | MsG0480020085.01.T01:intron | 40.0% |
!! | TAGCACAACCGTTGATTCTA+TGG | - | Chr4:33705182-33705201 | MsG0480020085.01.T01:intron | 40.0% |
CATCTGAGCAAGATAGTCTC+TGG | - | Chr4:33703485-33703504 | MsG0480020085.01.T01:intron | 45.0% | |
CTGGCATTTGAATGACCGAT+TGG | - | Chr4:33703504-33703523 | MsG0480020085.01.T01:intron | 45.0% | |
GCTATGGACATCATCAGAAG+AGG | - | Chr4:33703459-33703478 | MsG0480020085.01.T01:intron | 45.0% | |
GGTTAGCAGAAAGATACCCA+GGG | - | Chr4:33705276-33705295 | MsG0480020085.01.T01:CDS | 45.0% | |
GTCCCTCCCTTTCAGATTAA+TGG | - | Chr4:33705254-33705273 | MsG0480020085.01.T01:CDS | 45.0% | |
GTGTTGGAGTGTGTTTGATG+TGG | - | Chr4:33705005-33705024 | MsG0480020085.01.T01:CDS | 45.0% | |
GTTGGAGTGTGTTTGATGTG+GGG | - | Chr4:33705007-33705026 | MsG0480020085.01.T01:CDS | 45.0% | |
! | TCTATCACCAGCAAGTTGGA+TGG | - | Chr4:33705322-33705341 | MsG0480020085.01.T01:CDS | 45.0% |
! | TTCGATGAATGGAGTGCCTA+TGG | - | Chr4:33703164-33703183 | MsG0480020085.01.T01:CDS | 45.0% |
!! | ACTAAAAATTTAAATTTATA+AGG | - | Chr4:33704814-33704833 | MsG0480020085.01.T01:intron | 5.0% |
GATTGGAACTCCAACGCCAT+AGG | + | Chr4:33703183-33703202 | None:intergenic | 50.0% | |
! | CAAGTTGGATGGCAGTTGCT+TGG | - | Chr4:33705333-33705352 | MsG0480020085.01.T01:CDS | 50.0% |
! | GGGTTAGCAGAAAGATACCC+AGG | - | Chr4:33705275-33705294 | MsG0480020085.01.T01:CDS | 50.0% |
GCAACTGCCATCCAACTTGC+TGG | + | Chr4:33705332-33705351 | None:intergenic | 55.0% | |
! | GAATGGAGTGCCTATGGCGT+TGG | - | Chr4:33703170-33703189 | MsG0480020085.01.T01:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr4 | gene | 33702801 | 33705696 | 33702801 | ID=MsG0480020085.01;Name=MsG0480020085.01 |
Chr4 | mRNA | 33702801 | 33705696 | 33702801 | ID=MsG0480020085.01.T01;Parent=MsG0480020085.01;Name=MsG0480020085.01.T01;_AED=0.50;_eAED=0.50;_QI=92|0.75|0.6|1|0.75|0.8|5|0|238 |
Chr4 | exon | 33705521 | 33705696 | 33705521 | ID=MsG0480020085.01.T01:exon:2737;Parent=MsG0480020085.01.T01 |
Chr4 | exon | 33705212 | 33705414 | 33705212 | ID=MsG0480020085.01.T01:exon:2738;Parent=MsG0480020085.01.T01 |
Chr4 | exon | 33704906 | 33705116 | 33704906 | ID=MsG0480020085.01.T01:exon:2739;Parent=MsG0480020085.01.T01 |
Chr4 | exon | 33703143 | 33703228 | 33703143 | ID=MsG0480020085.01.T01:exon:2740;Parent=MsG0480020085.01.T01 |
Chr4 | exon | 33702801 | 33702933 | 33702801 | ID=MsG0480020085.01.T01:exon:2741;Parent=MsG0480020085.01.T01 |
Chr4 | five_prime_UTR | 33705605 | 33705696 | 33705605 | ID=MsG0480020085.01.T01:five_prime_utr;Parent=MsG0480020085.01.T01 |
Chr4 | CDS | 33705521 | 33705604 | 33705521 | ID=MsG0480020085.01.T01:cds;Parent=MsG0480020085.01.T01 |
Chr4 | CDS | 33705212 | 33705414 | 33705212 | ID=MsG0480020085.01.T01:cds;Parent=MsG0480020085.01.T01 |
Chr4 | CDS | 33704906 | 33705116 | 33704906 | ID=MsG0480020085.01.T01:cds;Parent=MsG0480020085.01.T01 |
Chr4 | CDS | 33703143 | 33703228 | 33703143 | ID=MsG0480020085.01.T01:cds;Parent=MsG0480020085.01.T01 |
Chr4 | CDS | 33702801 | 33702933 | 33702801 | ID=MsG0480020085.01.T01:cds;Parent=MsG0480020085.01.T01 |
Gene Sequence |
Protein sequence |