AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022274.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022274.01.T01 MTR_5g027180 97.482 278 7 0 1 278 1 278 0.0 559
MsG0480022274.01.T01 MTR_8g071150 72.348 264 73 0 1 264 1 264 2.78e-146 411
MsG0480022274.01.T01 MTR_8g071140 63.745 251 91 0 14 264 111 361 4.71e-118 343
MsG0480022274.01.T01 MTR_4g068340 31.008 258 159 5 1 247 1 250 3.18e-32 120
MsG0480022274.01.T01 MTR_2g021690 26.740 273 188 5 1 266 1 268 1.53e-31 119
MsG0480022274.01.T01 MTR_1g112160 29.612 206 133 5 83 276 27 232 2.40e-23 95.9
MsG0480022274.01.T01 MTR_1g112150 26.460 291 192 7 1 278 1 282 1.80e-22 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022274.01.T01 AT1G32127 74.242 264 68 0 1 264 1 264 1.87e-146 411
MsG0480022274.01.T01 AT1G32127 74.242 264 68 0 1 264 1 264 1.87e-146 411
MsG0480022274.01.T01 AT1G55240 32.302 291 180 7 1 278 1 287 2.14e-45 155
MsG0480022274.01.T01 AT1G55230 28.322 286 192 6 1 277 1 282 6.60e-40 140
MsG0480022274.01.T01 AT5G19870 29.643 280 181 9 1 270 1 274 2.85e-34 125
MsG0480022274.01.T01 AT1G49470 32.210 267 155 7 1 251 1 257 5.68e-32 120

Find 84 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGTAGGGTATGCTATTT+TGG 0.185525 4:+70512927 MsG0480022274.01.T01:exon
TAGTTGGGGTGTGGCATATT+TGG 0.191911 4:+70510475 MsG0480022274.01.T01:CDS
CTTCTTATGTTCTTTATCTA+TGG 0.197883 4:+70510723 MsG0480022274.01.T01:CDS
TAATGATTTGCATACAATTC+AGG 0.249628 4:+70512887 MsG0480022274.01.T01:CDS
ATAAAATGCATAGTCCTATT+TGG 0.267816 4:-70512572 None:intergenic
TATACTAATATATACCCTTT+TGG 0.272821 4:+70509381 MsG0480022274.01.T01:five_prime_UTR
TATAGAACATGTCTGTATAT+TGG 0.287889 4:+70513010 MsG0480022274.01.T01:three_prime_UTR
ACCAGATGGTTGCAAGATTA+AGG 0.289473 4:+70512716 MsG0480022274.01.T01:CDS
GCTCGAACACGAAACGTCTT+AGG 0.306136 4:-70510525 None:intergenic
TTCATATAGAGGGTATCTTT+TGG 0.307108 4:+70510317 MsG0480022274.01.T01:five_prime_UTR
AGTTGGGGTGTGGCATATTT+GGG 0.310805 4:+70510476 MsG0480022274.01.T01:CDS
TTGCAACCATCTGGTATCAT+AGG 0.312702 4:-70512708 None:intergenic
TTTCAAGGGTCATGCTTTGC+CGG 0.328389 4:+70510437 MsG0480022274.01.T01:CDS
ACCCTCCTCGTCTTCCAAAT+AGG 0.366655 4:+70512558 MsG0480022274.01.T01:CDS
GTCTGTATATTGGAGTTAAA+AGG 0.367686 4:+70513020 MsG0480022274.01.T01:three_prime_UTR
AAATCGGCTGGAAAGTTGTT+TGG 0.368226 4:-70512618 None:intergenic
GCTCTTTGTTGCCATCCTTT+CGG 0.373014 4:+70512803 MsG0480022274.01.T01:CDS
GAGCTCTATGTTGTTGCAAT+TGG 0.374652 4:+70510591 MsG0480022274.01.T01:CDS
CTTTAGCGCTGCAAGGCATA+TGG 0.378119 4:+70512655 MsG0480022274.01.T01:CDS
TCCTTAATCTTGCAACCATC+TGG 0.387259 4:-70512717 None:intergenic
AGCGATGCCGTTGCATAAAT+CGG 0.390715 4:-70512634 None:intergenic
GCAAGTGGTGTAGAAGGAAT+AGG 0.399248 4:+70513084 MsG0480022274.01.T01:three_prime_UTR
TGATGGGAGGCTAAAATACT+TGG 0.399410 4:+70510569 MsG0480022274.01.T01:CDS
GCCATCCTTTCGGTTCTTGT+TGG 0.409177 4:+70512813 MsG0480022274.01.T01:CDS
TTTCATTCAACATCACATAA+AGG 0.423117 4:+70512516 MsG0480022274.01.T01:CDS
AAAATATAGTATATTGAGAT+TGG 0.435738 4:+70509298 None:intergenic
TTCAAGGGTCATGCTTTGCC+GGG 0.438314 4:+70510438 MsG0480022274.01.T01:CDS
TTACTTACAATAGTAGTGAT+TGG 0.439089 4:-70509576 None:intergenic
TAATGGTATGTGAAATGAAA+AGG 0.439141 4:-70509438 None:intergenic
CTGGAAAGTTGTTTGGAAGA+AGG 0.447000 4:-70512611 None:intergenic
TAGTGATTGAATTGCCCAAA+AGG 0.450565 4:-70509396 None:intergenic
GATTAGATCAAAACTGAAGT+AGG 0.452967 4:+70512913 MsG0480022274.01.T01:exon
TACAGCTAAGAAATCATTCA+AGG 0.464409 4:+70510359 MsG0480022274.01.T01:five_prime_UTR
ATTGGTATAGGTTCATATAG+AGG 0.464798 4:+70510306 MsG0480022274.01.T01:intron
AAAAGGGTATATATTAGTAT+AGG 0.467520 4:-70509379 None:intergenic
ACTCACCTCAAGATAATTGT+TGG 0.467738 4:+70510651 MsG0480022274.01.T01:CDS
TGGAAAGTTGTTTGGAAGAA+GGG 0.490039 4:-70512610 None:intergenic
CGGAAAATGCCATGGCAGCT+AGG 0.498795 4:-70512473 None:intergenic
AATGGTATGTGAAATGAAAA+GGG 0.505652 4:-70509437 None:intergenic
TTGATTTAATTACAAGAGAG+TGG 0.505741 4:+70510388 MsG0480022274.01.T01:five_prime_UTR
ATGAATGACTTTGAGCACTC+GGG 0.516066 4:+70510696 MsG0480022274.01.T01:CDS
ATGCCGTTGCATAAATCGGC+TGG 0.516097 4:-70512630 None:intergenic
AGGAAACTTATTCTTTAATG+TGG 0.516649 4:+70513104 MsG0480022274.01.T01:three_prime_UTR
CTCCCATCAAAACCCGGTAC+AGG 0.520728 4:-70510555 None:intergenic
TTAGTTACACTTGAGTATGT+TGG 0.525182 4:+70512975 MsG0480022274.01.T01:three_prime_UTR
CATAAAATACCTTGTTGCAA+TGG 0.527231 4:-70512447 None:intergenic
TTTATGTTTCCTAGCTGCCA+TGG 0.533188 4:+70512464 MsG0480022274.01.T01:CDS
AGACGTTTCGTGTTCGAGCG+TGG 0.536426 4:+70510529 MsG0480022274.01.T01:CDS
AGTGATTGAATTGCCCAAAA+GGG 0.544057 4:-70509395 None:intergenic
TTGGTATAGGTTCATATAGA+GGG 0.545912 4:+70510307 MsG0480022274.01.T01:intron
TCGAGCGTGGAATCCTGTAC+CGG 0.548667 4:+70510542 MsG0480022274.01.T01:CDS
GTTGTTTGGAAGAAGGGCTC+CGG 0.548724 4:-70512604 None:intergenic
TATGAATGACTTTGAGCACT+CGG 0.553153 4:+70510695 MsG0480022274.01.T01:CDS
TTTGGAAGACGAGGAGGGTG+TGG 0.553435 4:-70512554 None:intergenic
TGCAACCATCTGGTATCATA+GGG 0.554097 4:-70512707 None:intergenic
TCAGTTGACAGTGAGATTCG+CGG 0.561893 4:+70512759 MsG0480022274.01.T01:CDS
ATTTCAATGAATGATTGTGA+AGG 0.564296 4:-70509514 None:intergenic
TTTCCAGCCGATTTATGCAA+CGG 0.568372 4:+70512627 MsG0480022274.01.T01:CDS
GATTTGCATACAATTCAGGA+TGG 0.570638 4:+70512891 MsG0480022274.01.T01:CDS
CGAGCGTGGAATCCTGTACC+GGG 0.573272 4:+70510543 MsG0480022274.01.T01:CDS
TTTATGTGATGTTGAATGAA+AGG 0.575760 4:-70512514 None:intergenic
ATTAGATCAAAACTGAAGTA+GGG 0.575919 4:+70512914 MsG0480022274.01.T01:exon
TCAAAGTCATTCATATGAGA+AGG 0.583114 4:-70510687 None:intergenic
AAGAACATATTGATTGACAT+AGG 0.584614 4:+70509350 MsG0480022274.01.T01:five_prime_UTR
ACCAACAAGAACCGAAAGGA+TGG 0.586194 4:-70512814 None:intergenic
CACCTCAAGATAATTGTTGG+TGG 0.591598 4:+70510654 MsG0480022274.01.T01:CDS
TATGGCCCTATGATACCAGA+TGG 0.593823 4:+70512702 MsG0480022274.01.T01:CDS
AACATCACATAAAGGTCTCG+AGG 0.601372 4:+70512524 MsG0480022274.01.T01:CDS
GGCATCGCTTTAGCGCTGCA+AGG 0.601674 4:+70512648 MsG0480022274.01.T01:CDS
AAAGGAGAATAGAAGATACT+CGG 0.605972 4:-70512496 None:intergenic
TCAAGGGTCATGCTTTGCCG+GGG 0.619566 4:+70510439 MsG0480022274.01.T01:CDS
GTCCTATTTGGAAGACGAGG+AGG 0.619764 4:-70512560 None:intergenic
TTTAGCCTCCCATCAAAACC+CGG 0.622539 4:-70510561 None:intergenic
CACCACCAACAATTATCTTG+AGG 0.625766 4:-70510656 None:intergenic
TCCTATTTGGAAGACGAGGA+GGG 0.627926 4:-70512559 None:intergenic
AGATTTCTTCCATTGCAACA+AGG 0.635937 4:+70512438 MsG0480022274.01.T01:intron
ACAGCTAAGAAATCATTCAA+GGG 0.636237 4:+70510360 MsG0480022274.01.T01:five_prime_UTR
ACATCACATAAAGGTCTCGA+GGG 0.649189 4:+70512525 MsG0480022274.01.T01:CDS
TGAATGACTTTGAGCACTCG+GGG 0.653649 4:+70510697 MsG0480022274.01.T01:CDS
ATACTCGGCGGAAAATGCCA+TGG 0.666532 4:-70512481 None:intergenic
GGTATGTGAAATGAAAAGGG+AGG 0.693658 4:-70509434 None:intergenic
CAGTACCAACAAGAACCGAA+AGG 0.694080 4:-70512818 None:intergenic
ATAGTCCTATTTGGAAGACG+AGG 0.716043 4:-70512563 None:intergenic
GGAGAATAGAAGATACTCGG+CGG 0.725727 4:-70512493 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAAATATTATTAAGAAAAA+TGG + Chr4:70510410-70510429 MsG0480022274.01.T01:exon 10.0%
!!! AAAAAGTTAAGATTTTTATA+AGG - Chr4:70509708-70509727 None:intergenic 10.0%
!! CTAATTTATTCTATTTAAAC+AGG - Chr4:70510850-70510869 None:intergenic 15.0%
!! CTGTTTAAATAGAATAAATT+AGG + Chr4:70510848-70510867 MsG0480022274.01.T01:intron 15.0%
!! TTTGATGTTTGAAAATTAAT+TGG + Chr4:70510288-70510307 MsG0480022274.01.T01:intron 15.0%
!!! AACTTTTAGATATGAATAAT+GGG - Chr4:70509664-70509683 None:intergenic 15.0%
!! AAAACAAAAAAGTCAAAACT+TGG - Chr4:70509901-70509920 None:intergenic 20.0%
!! AAACAAAAAAGTCAAAACTT+GGG - Chr4:70509900-70509919 None:intergenic 20.0%
!! AAGTGATTAATTAGTTGATT+AGG + Chr4:70510029-70510048 MsG0480022274.01.T01:intron 20.0%
!! AATCTATGCAAGAAAAAAAA+CGG - Chr4:70512423-70512442 None:intergenic 20.0%
!! ATGAAAATGAAAATGAAAAG+AGG - Chr4:70509603-70509622 None:intergenic 20.0%
!! GTTTGAAAATTAATTGGTAT+AGG + Chr4:70510294-70510313 MsG0480022274.01.T01:intron 20.0%
!! TAGAAATATTCTGTCAAAAA+AGG + Chr4:70510259-70510278 MsG0480022274.01.T01:intron 20.0%
!! TGAAAATGAAAATGAAAAGA+GGG - Chr4:70509602-70509621 None:intergenic 20.0%
!! TTGTCTTATGATTATAGAAA+GGG - Chr4:70511330-70511349 None:intergenic 20.0%
!! TTTGTCTTATGATTATAGAA+AGG - Chr4:70511331-70511350 None:intergenic 20.0%
!!! AAAAGGGTATATATTAGTAT+AGG - Chr4:70509382-70509401 None:intergenic 20.0%
!!! AAAATTTTCATACTTCTCAA+TGG + Chr4:70509819-70509838 MsG0480022274.01.T01:intron 20.0%
!!! ATACTAATATATACCCTTTT+GGG + Chr4:70509382-70509401 MsG0480022274.01.T01:five_prime_UTR 20.0%
!!! CTAATTTTTTCATTTTCCAA+AGG - Chr4:70509980-70509999 None:intergenic 20.0%
!!! GAACTTTTAGATATGAATAA+TGG - Chr4:70509665-70509684 None:intergenic 20.0%
!!! GTTTTGACTTTTTTGTTTTT+TGG + Chr4:70509902-70509921 MsG0480022274.01.T01:intron 20.0%
!!! TAAAAAAACATTTTTTGCAG+CGG - Chr4:70511789-70511808 None:intergenic 20.0%
!!! TATACTAATATATACCCTTT+TGG + Chr4:70509381-70509400 MsG0480022274.01.T01:five_prime_UTR 20.0%
!!! TTCTTTAAAAGTTAATGCAA+GGG - Chr4:70512332-70512351 None:intergenic 20.0%
!!! TTGTTTCTTGAAAAAATTCA+AGG + Chr4:70510081-70510100 MsG0480022274.01.T01:intron 20.0%
!!! TTTTCTCTTATTTGGTTTAA+TGG - Chr4:70509458-70509477 None:intergenic 20.0%
!!! TTTTTATATTTCTTCTCCTT+TGG + Chr4:70509961-70509980 MsG0480022274.01.T01:intron 20.0%
! AACAAAAAAGTCAAAACTTG+GGG - Chr4:70509899-70509918 None:intergenic 25.0%
! AATGGTATGTGAAATGAAAA+GGG - Chr4:70509440-70509459 None:intergenic 25.0%
! ACAAAAAAATCAATGTGAAG+AGG - Chr4:70509867-70509886 None:intergenic 25.0%
! ACCATAAACTTCAAATTTCA+AGG - Chr4:70510234-70510253 None:intergenic 25.0%
! ACTTTCTGATAAAACTCAAA+TGG - Chr4:70510148-70510167 None:intergenic 25.0%
! AGGAAACTTATTCTTTAATG+TGG + Chr4:70513104-70513123 MsG0480022274.01.T01:three_prime_UTR 25.0%
! ATAAAATGCATAGTCCTATT+TGG - Chr4:70512575-70512594 None:intergenic 25.0%
! ATTAGATCAAAACTGAAGTA+GGG + Chr4:70512914-70512933 MsG0480022274.01.T01:exon 25.0%
! ATTCACTTATTACTACTAGA+TGG + Chr4:70509769-70509788 MsG0480022274.01.T01:intron 25.0%
! ATTTCAATGAATGATTGTGA+AGG - Chr4:70509517-70509536 None:intergenic 25.0%
! CAAAAAAATCAATGTGAAGA+GGG - Chr4:70509866-70509885 None:intergenic 25.0%
! CAAATAAGAGAAAAACTTTC+AGG + Chr4:70509464-70509483 MsG0480022274.01.T01:five_prime_UTR 25.0%
! CTTCTTATGTTCTTTATCTA+TGG + Chr4:70510723-70510742 MsG0480022274.01.T01:CDS 25.0%
! GAGAAATAAACTGAATAAGA+AGG + Chr4:70512079-70512098 MsG0480022274.01.T01:intron 25.0%
! TAATGGTATGTGAAATGAAA+AGG - Chr4:70509441-70509460 None:intergenic 25.0%
! TATAGAACATGTCTGTATAT+TGG + Chr4:70513010-70513029 MsG0480022274.01.T01:three_prime_UTR 25.0%
! TCTATGATTAATCATGAGAA+AGG - Chr4:70510910-70510929 None:intergenic 25.0%
! TCTCATGATTAATCATAGAT+AGG + Chr4:70510911-70510930 MsG0480022274.01.T01:intron 25.0%
! TTACTTACAATAGTAGTGAT+TGG - Chr4:70509579-70509598 None:intergenic 25.0%
! TTGATTTAATTACAAGAGAG+TGG + Chr4:70510388-70510407 MsG0480022274.01.T01:five_prime_UTR 25.0%
! TTTATGTGATGTTGAATGAA+AGG - Chr4:70512517-70512536 None:intergenic 25.0%
! TTTCATTCAACATCACATAA+AGG + Chr4:70512516-70512535 MsG0480022274.01.T01:CDS 25.0%
!! AAGAACATATTGATTGACAT+AGG + Chr4:70509350-70509369 MsG0480022274.01.T01:five_prime_UTR 25.0%
!! ATATTAAAACGAAGCTTTAG+TGG + Chr4:70511463-70511482 MsG0480022274.01.T01:intron 25.0%
!! CTGAAAGTTTTTCTCTTATT+TGG - Chr4:70509466-70509485 None:intergenic 25.0%
!! GTTCTTTAAAAGTTAATGCA+AGG - Chr4:70512333-70512352 None:intergenic 25.0%
!! TAATGATTTGCATACAATTC+AGG + Chr4:70512887-70512906 MsG0480022274.01.T01:CDS 25.0%
!! TAATGTATTGATGTTCTAGA+TGG - Chr4:70511286-70511305 None:intergenic 25.0%
!! TAGTTACTTTCAAGTGAAAT+TGG + Chr4:70511525-70511544 MsG0480022274.01.T01:intron 25.0%
!! TCCTTGAAATTTGAAGTTTA+TGG + Chr4:70510230-70510249 MsG0480022274.01.T01:intron 25.0%
!!! AAGGTTTTTTTTGTGTTTGT+GGG - Chr4:70509498-70509517 None:intergenic 25.0%
!!! AATAATGACTTGTTCTAGAT+AGG + Chr4:70511078-70511097 MsG0480022274.01.T01:intron 25.0%
!!! ATAATGACTTGTTCTAGATA+GGG + Chr4:70511079-70511098 MsG0480022274.01.T01:intron 25.0%
!!! TAGATCCTTTTTTTTCTTTC+CGG + Chr4:70511169-70511188 MsG0480022274.01.T01:intron 25.0%
!!! TTGCATAGTTTTGAATTTCA+GGG + Chr4:70511140-70511159 MsG0480022274.01.T01:intron 25.0%
AAAGGAGAATAGAAGATACT+CGG - Chr4:70512499-70512518 None:intergenic 30.0%
AAATTCAAGGACACTATTAC+TGG + Chr4:70510094-70510113 MsG0480022274.01.T01:intron 30.0%
AACACATCTTACTTGAGTAT+TGG - Chr4:70510941-70510960 None:intergenic 30.0%
AAGAAAAATGGGATCTTTCA+AGG + Chr4:70510422-70510441 MsG0480022274.01.T01:exon 30.0%
ACAAAAAAGTCAAAACTTGG+GGG - Chr4:70509898-70509917 None:intergenic 30.0%
ACAGCTAAGAAATCATTCAA+GGG + Chr4:70510360-70510379 MsG0480022274.01.T01:five_prime_UTR 30.0%
AGAAAAATGGGATCTTTCAA+GGG + Chr4:70510423-70510442 MsG0480022274.01.T01:exon 30.0%
AGTTTCCGGAAAGAAAAAAA+AGG - Chr4:70511177-70511196 None:intergenic 30.0%
ATAAACTGAATAAGAAGGCA+AGG + Chr4:70512084-70512103 MsG0480022274.01.T01:intron 30.0%
ATAATACAGTAGACGATACA+AGG - Chr4:70511891-70511910 None:intergenic 30.0%
ATTGGTATAGGTTCATATAG+AGG + Chr4:70510306-70510325 MsG0480022274.01.T01:intron 30.0%
CATAAAATACCTTGTTGCAA+TGG - Chr4:70512450-70512469 None:intergenic 30.0%
CTTCAAATTTATGCATTGCA+AGG + Chr4:70512209-70512228 MsG0480022274.01.T01:intron 30.0%
GAAAGGGAGTGAATAAAATT+AGG - Chr4:70511314-70511333 None:intergenic 30.0%
GATTAGATCAAAACTGAAGT+AGG + Chr4:70512913-70512932 MsG0480022274.01.T01:exon 30.0%
GTCTGTATATTGGAGTTAAA+AGG + Chr4:70513020-70513039 MsG0480022274.01.T01:three_prime_UTR 30.0%
TACAGCTAAGAAATCATTCA+AGG + Chr4:70510359-70510378 MsG0480022274.01.T01:five_prime_UTR 30.0%
TCAAAGTCATTCATATGAGA+AGG - Chr4:70510690-70510709 None:intergenic 30.0%
TCAAGAACTAACATATCTAG+TGG - Chr4:70511864-70511883 None:intergenic 30.0%
TGTAAATGGTGTATTCTTTG+CGG + Chr4:70511953-70511972 MsG0480022274.01.T01:intron 30.0%
TGTACTAAATAGTGTATCGT+AGG + Chr4:70511053-70511072 MsG0480022274.01.T01:intron 30.0%
TTAGTTACACTTGAGTATGT+TGG + Chr4:70512975-70512994 MsG0480022274.01.T01:three_prime_UTR 30.0%
TTGGTATAGGTTCATATAGA+GGG + Chr4:70510307-70510326 MsG0480022274.01.T01:intron 30.0%
! AAAATTAGTTGACTGACTCT+AGG + Chr4:70509992-70510011 MsG0480022274.01.T01:intron 30.0%
! GTACTAGCAAAATAACTTGT+AGG - Chr4:70511368-70511387 None:intergenic 30.0%
! GTTTAATTTCCACAGTACAT+CGG - Chr4:70511422-70511441 None:intergenic 30.0%
! TGCATTTTATCTTCAATTGC+CGG + Chr4:70512585-70512604 MsG0480022274.01.T01:CDS 30.0%
!! ACTAGATGGATTAAACTTGT+TGG + Chr4:70509783-70509802 MsG0480022274.01.T01:intron 30.0%
!! AGTTTTGCTACATGATTTGT+GGG - Chr4:70511662-70511681 None:intergenic 30.0%
!! CAAACTGCTTTTGTTCTTTA+TGG + Chr4:70512684-70512703 MsG0480022274.01.T01:CDS 30.0%
!! CTAGATGGATTAAACTTGTT+GGG + Chr4:70509784-70509803 MsG0480022274.01.T01:intron 30.0%
!! TACAAAGTATTGCTGAATAG+TGG - Chr4:70511037-70511056 None:intergenic 30.0%
!!! GAAGGTTTTTTTTGTGTTTG+TGG - Chr4:70509499-70509518 None:intergenic 30.0%
!!! GTTGCATAGTTTTGAATTTC+AGG + Chr4:70511139-70511158 MsG0480022274.01.T01:intron 30.0%
!!! TTCATATAGAGGGTATCTTT+TGG + Chr4:70510317-70510336 MsG0480022274.01.T01:five_prime_UTR 30.0%
AAAAAAAACGGAGAGGAGTA+TGG - Chr4:70512411-70512430 None:intergenic 35.0%
AACTATGCAACTGAATTGTG+TGG + Chr4:70511193-70511212 MsG0480022274.01.T01:intron 35.0%
ACTCACCTCAAGATAATTGT+TGG + Chr4:70510651-70510670 MsG0480022274.01.T01:CDS 35.0%
AGAGGGAAATTATAGAAGCA+TGG - Chr4:70509849-70509868 None:intergenic 35.0%
AGATTTCTTCCATTGCAACA+AGG + Chr4:70512438-70512457 MsG0480022274.01.T01:intron 35.0%
AGTGATTGAATTGCCCAAAA+GGG - Chr4:70509398-70509417 None:intergenic 35.0%
ATGCAAGAAAAAAAACGGAG+AGG - Chr4:70512418-70512437 None:intergenic 35.0%
CAATTCAGTTGCATAGTTTC+CGG - Chr4:70511191-70511210 None:intergenic 35.0%
CTTCAAATTTATGCATTGCG+AGG + Chr4:70512249-70512268 MsG0480022274.01.T01:intron 35.0%
GATTTGCATACAATTCAGGA+TGG + Chr4:70512891-70512910 MsG0480022274.01.T01:CDS 35.0%
GTGTGTTTAGTTAAAGATGC+AGG - Chr4:70512296-70512315 None:intergenic 35.0%
TAGTGATTGAATTGCCCAAA+AGG - Chr4:70509399-70509418 None:intergenic 35.0%
TATGAATGACTTTGAGCACT+CGG + Chr4:70510695-70510714 MsG0480022274.01.T01:CDS 35.0%
TGGAAAGTTGTTTGGAAGAA+GGG - Chr4:70512613-70512632 None:intergenic 35.0%
TTGAGAAAGATTGTGTGTGA+AGG - Chr4:70509733-70509752 None:intergenic 35.0%
! CAAGTAAGATGTGTTCTAGA+CGG + Chr4:70510946-70510965 MsG0480022274.01.T01:intron 35.0%
! GAGTTTTGCTACATGATTTG+TGG - Chr4:70511663-70511682 None:intergenic 35.0%
! GCTTTTTGTGTGACTGTAAA+TGG + Chr4:70511939-70511958 MsG0480022274.01.T01:intron 35.0%
!! GGCTCTAAAAGTTAACATTG+TGG + Chr4:70511709-70511728 MsG0480022274.01.T01:intron 35.0%
!! TGAAGTAGGGTATGCTATTT+TGG + Chr4:70512927-70512946 MsG0480022274.01.T01:exon 35.0%
!!! GACGTTGTTTTTTGTAGTTG+GGG + Chr4:70510461-70510480 MsG0480022274.01.T01:CDS 35.0%
!!! GGACGTTGTTTTTTGTAGTT+GGG + Chr4:70510460-70510479 MsG0480022274.01.T01:CDS 35.0%
AAATCGGCTGGAAAGTTGTT+TGG - Chr4:70512621-70512640 None:intergenic 40.0%
AACATCACATAAAGGTCTCG+AGG + Chr4:70512524-70512543 MsG0480022274.01.T01:CDS 40.0%
ACATCACATAAAGGTCTCGA+GGG + Chr4:70512525-70512544 MsG0480022274.01.T01:CDS 40.0%
ACCAGATGGTTGCAAGATTA+AGG + Chr4:70512716-70512735 MsG0480022274.01.T01:CDS 40.0%
ACTACAAAAAACAACGTCCC+CGG - Chr4:70510459-70510478 None:intergenic 40.0%
AGTATTCATGCCTAAACCTG+AGG - Chr4:70511263-70511282 None:intergenic 40.0%
ATAGTCCTATTTGGAAGACG+AGG - Chr4:70512566-70512585 None:intergenic 40.0%
ATGAATGACTTTGAGCACTC+GGG + Chr4:70510696-70510715 MsG0480022274.01.T01:CDS 40.0%
CACCACCAACAATTATCTTG+AGG - Chr4:70510659-70510678 None:intergenic 40.0%
CACCTCAAGATAATTGTTGG+TGG + Chr4:70510654-70510673 MsG0480022274.01.T01:CDS 40.0%
CTCCAATAAGTCCATGTTGT+AGG + Chr4:70511680-70511699 MsG0480022274.01.T01:intron 40.0%
CTCTACTTAGCGAAAAAACC+AGG + Chr4:70510754-70510773 MsG0480022274.01.T01:CDS 40.0%
CTGGAAAGTTGTTTGGAAGA+AGG - Chr4:70512614-70512633 None:intergenic 40.0%
GAGCAATAGATGAACTAACC+TGG - Chr4:70510775-70510794 None:intergenic 40.0%
GAGCTCTATGTTGTTGCAAT+TGG + Chr4:70510591-70510610 MsG0480022274.01.T01:CDS 40.0%
GGTATGTGAAATGAAAAGGG+AGG - Chr4:70509437-70509456 None:intergenic 40.0%
TCCTTAATCTTGCAACCATC+TGG - Chr4:70512720-70512739 None:intergenic 40.0%
TGATGGGAGGCTAAAATACT+TGG + Chr4:70510569-70510588 MsG0480022274.01.T01:CDS 40.0%
TGCAACCATCTGGTATCATA+GGG - Chr4:70512710-70512729 None:intergenic 40.0%
TGCAACTGAATTGTGTGTCA+AGG - Chr4:70511125-70511144 None:intergenic 40.0%
TGCCTACAACATGGACTTAT+TGG - Chr4:70511685-70511704 None:intergenic 40.0%
TTGCAACCATCTGGTATCAT+AGG - Chr4:70512711-70512730 None:intergenic 40.0%
TTTATGTTTCCTAGCTGCCA+TGG + Chr4:70512464-70512483 MsG0480022274.01.T01:CDS 40.0%
! CTTTTAGCAAGTGGTGTAGA+AGG + Chr4:70513078-70513097 MsG0480022274.01.T01:three_prime_UTR 40.0%
! TTTCCAGCCGATTTATGCAA+CGG + Chr4:70512627-70512646 MsG0480022274.01.T01:CDS 40.0%
!! TCTAGACGGTGTTGTCAATT+GGG + Chr4:70510960-70510979 MsG0480022274.01.T01:intron 40.0%
!! TTCTAGACGGTGTTGTCAAT+TGG + Chr4:70510959-70510978 MsG0480022274.01.T01:intron 40.0%
!!! GGGACGTTGTTTTTTGTAGT+TGG + Chr4:70510459-70510478 MsG0480022274.01.T01:CDS 40.0%
!!! TCCTCGCTGTTTTTGCATAT+GGG - Chr4:70509330-70509349 None:intergenic 40.0%
!!! TGTTTTTTGTAGTTGGGGTG+TGG + Chr4:70510466-70510485 MsG0480022274.01.T01:CDS 40.0%
!!! TTCCTCGCTGTTTTTGCATA+TGG - Chr4:70509331-70509350 None:intergenic 40.0%
ACCAACAAGAACCGAAAGGA+TGG - Chr4:70512817-70512836 None:intergenic 45.0%
ACCCATATGCAAAAACAGCG+AGG + Chr4:70509326-70509345 MsG0480022274.01.T01:five_prime_UTR 45.0%
AGCGATGCCGTTGCATAAAT+CGG - Chr4:70512637-70512656 None:intergenic 45.0%
AGTCCATGTTGTAGGCAGTT+TGG + Chr4:70511688-70511707 MsG0480022274.01.T01:intron 45.0%
AGTTGGGGTGTGGCATATTT+GGG + Chr4:70510476-70510495 MsG0480022274.01.T01:CDS 45.0%
ATCGGATGAAATGGATGCGA+AGG - Chr4:70511404-70511423 None:intergenic 45.0%
CAGTACCAACAAGAACCGAA+AGG - Chr4:70512821-70512840 None:intergenic 45.0%
CCACAGTACATCGGATGAAA+TGG - Chr4:70511413-70511432 None:intergenic 45.0%
CCATTTCATCCGATGTACTG+TGG + Chr4:70511410-70511429 MsG0480022274.01.T01:intron 45.0%
CGCTATAGCACTGTGAACAA+CGG - Chr4:70511001-70511020 None:intergenic 45.0%
GCAAGTGGTGTAGAAGGAAT+AGG + Chr4:70513084-70513103 MsG0480022274.01.T01:three_prime_UTR 45.0%
GCTCTTTGTTGCCATCCTTT+CGG + Chr4:70512803-70512822 MsG0480022274.01.T01:CDS 45.0%
GGAGAATAGAAGATACTCGG+CGG - Chr4:70512496-70512515 None:intergenic 45.0%
GGTTGACAATACTCTGACGT+GGG + Chr4:70511214-70511233 MsG0480022274.01.T01:intron 45.0%
TAGTTGGGGTGTGGCATATT+TGG + Chr4:70510475-70510494 MsG0480022274.01.T01:CDS 45.0%
TATGGATGGACCTCAGGTTT+AGG + Chr4:70511250-70511269 MsG0480022274.01.T01:intron 45.0%
TATGGCCCTATGATACCAGA+TGG + Chr4:70512702-70512721 MsG0480022274.01.T01:CDS 45.0%
TCAGTTGACAGTGAGATTCG+CGG + Chr4:70512759-70512778 MsG0480022274.01.T01:CDS 45.0%
TCCTATTTGGAAGACGAGGA+GGG - Chr4:70512562-70512581 None:intergenic 45.0%
TCGGATGAAATGGATGCGAA+GGG - Chr4:70511403-70511422 None:intergenic 45.0%
TGAATGACTTTGAGCACTCG+GGG + Chr4:70510697-70510716 MsG0480022274.01.T01:CDS 45.0%
TGCAGCGGCAACAACAAATA+CGG - Chr4:70511774-70511793 None:intergenic 45.0%
TGGTTGACAATACTCTGACG+TGG + Chr4:70511213-70511232 MsG0480022274.01.T01:intron 45.0%
TTTAGCCTCCCATCAAAACC+CGG - Chr4:70510564-70510583 None:intergenic 45.0%
TTTCAAGGGTCATGCTTTGC+CGG + Chr4:70510437-70510456 MsG0480022274.01.T01:CDS 45.0%
! GTGCAGTGACTTTTAGCAAG+TGG + Chr4:70513069-70513088 MsG0480022274.01.T01:three_prime_UTR 45.0%
!! AATCCTGTACCGGGTTTTGA+TGG + Chr4:70510552-70510571 MsG0480022274.01.T01:CDS 45.0%
!! ATCCTGTACCGGGTTTTGAT+GGG + Chr4:70510553-70510572 MsG0480022274.01.T01:CDS 45.0%
!! CTAGACGGTGTTGTCAATTG+GGG + Chr4:70510961-70510980 MsG0480022274.01.T01:intron 45.0%
!! TAAATATTATTAAGAAAAAT+GGG + Chr4:70510411-70510430 MsG0480022274.01.T01:exon 5.0%
!!! TTTTTTCTTTTTTTTTTTTT+TGG - Chr4:70512030-70512049 None:intergenic 5.0%
ACCCTCCTCGTCTTCCAAAT+AGG + Chr4:70512558-70512577 MsG0480022274.01.T01:CDS 50.0%
ATACTCGGCGGAAAATGCCA+TGG - Chr4:70512484-70512503 None:intergenic 50.0%
ATGCCGTTGCATAAATCGGC+TGG - Chr4:70512633-70512652 None:intergenic 50.0%
CTGTAGTATGGATGGACCTC+AGG + Chr4:70511244-70511263 MsG0480022274.01.T01:intron 50.0%
CTTTAGCGCTGCAAGGCATA+TGG + Chr4:70512655-70512674 MsG0480022274.01.T01:CDS 50.0%
GACCTCCTCTGTAGTATGGA+TGG + Chr4:70511236-70511255 MsG0480022274.01.T01:intron 50.0%
GAGCCAAACTGCCTACAACA+TGG - Chr4:70511694-70511713 None:intergenic 50.0%
GAGGTCCATCCATACTACAG+AGG - Chr4:70511244-70511263 None:intergenic 50.0%
GCCATCCTTTCGGTTCTTGT+TGG + Chr4:70512813-70512832 MsG0480022274.01.T01:CDS 50.0%
GCTCGAACACGAAACGTCTT+AGG - Chr4:70510528-70510547 None:intergenic 50.0%
GTCCATCCATACTACAGAGG+AGG - Chr4:70511241-70511260 None:intergenic 50.0%
GTCCTATTTGGAAGACGAGG+AGG - Chr4:70512563-70512582 None:intergenic 50.0%
GTTGTTTGGAAGAAGGGCTC+CGG - Chr4:70512607-70512626 None:intergenic 50.0%
TTCAAGGGTCATGCTTTGCC+GGG + Chr4:70510438-70510457 MsG0480022274.01.T01:CDS 50.0%
AGACGTTTCGTGTTCGAGCG+TGG + Chr4:70510529-70510548 MsG0480022274.01.T01:CDS 55.0%
CGGAAAATGCCATGGCAGCT+AGG - Chr4:70512476-70512495 None:intergenic 55.0%
CTCCCATCAAAACCCGGTAC+AGG - Chr4:70510558-70510577 None:intergenic 55.0%
GTGGGACCTCCTCTGTAGTA+TGG + Chr4:70511232-70511251 MsG0480022274.01.T01:intron 55.0%
TCAAGGGTCATGCTTTGCCG+GGG + Chr4:70510439-70510458 MsG0480022274.01.T01:CDS 55.0%
TCGAGCGTGGAATCCTGTAC+CGG + Chr4:70510542-70510561 MsG0480022274.01.T01:CDS 55.0%
TTTGGAAGACGAGGAGGGTG+TGG - Chr4:70512557-70512576 None:intergenic 55.0%
!! CTGTACCGGGTTTTGATGGG+AGG + Chr4:70510556-70510575 MsG0480022274.01.T01:CDS 55.0%
CGAGCGTGGAATCCTGTACC+GGG + Chr4:70510543-70510562 MsG0480022274.01.T01:CDS 60.0%
GGCATCGCTTTAGCGCTGCA+AGG + Chr4:70512648-70512667 MsG0480022274.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 70509303 70513154 70509303 ID=MsG0480022274.01;Name=MsG0480022274.01
Chr4 mRNA 70509303 70513154 70509303 ID=MsG0480022274.01.T01;Parent=MsG0480022274.01;Name=MsG0480022274.01.T01;_AED=0.48;_eAED=0.48;_QI=401|1|1|1|0.5|0.33|3|225|278
Chr4 exon 70512440 70513154 70512440 ID=MsG0480022274.01.T01:exon:3777;Parent=MsG0480022274.01.T01
Chr4 exon 70510316 70510775 70510316 ID=MsG0480022274.01.T01:exon:3776;Parent=MsG0480022274.01.T01
Chr4 exon 70509303 70509590 70509303 ID=MsG0480022274.01.T01:exon:3775;Parent=MsG0480022274.01.T01
Chr4 five_prime_UTR 70509303 70509590 70509303 ID=MsG0480022274.01.T01:five_prime_utr;Parent=MsG0480022274.01.T01
Chr4 five_prime_UTR 70510316 70510428 70510316 ID=MsG0480022274.01.T01:five_prime_utr;Parent=MsG0480022274.01.T01
Chr4 CDS 70510429 70510775 70510429 ID=MsG0480022274.01.T01:cds;Parent=MsG0480022274.01.T01
Chr4 CDS 70512440 70512929 70512440 ID=MsG0480022274.01.T01:cds;Parent=MsG0480022274.01.T01
Chr4 three_prime_UTR 70512930 70513154 70512930 ID=MsG0480022274.01.T01:three_prime_utr;Parent=MsG0480022274.01.T01
Gene Sequence

>MsG0480022274.01.T01

ATGGGATCTTTCAAGGGTCATGCTTTGCCGGGGACGTTGTTTTTTGTAGTTGGGGTGTGGCATATTTGGGCTTCTATAGTGAGATATGTACGTAATCCTAAGACGTTTCGTGTTCGAGCGTGGAATCCTGTACCGGGTTTTGATGGGAGGCTAAAATACTTGGAGCTCTATGTTGTTGCAATTGGTGCTTTTATTGATTTGTGTGTTGAGTTTTTGTATTCAACTCACCTCAAGATAATTGTTGGTGGTGTACTTAATCCTTCTCATATGAATGACTTTGAGCACTCGGGGATGCTTCTTATGTTCTTTATCTATGGTGTTGTTGCTCTACTTAGCGAAAAAACCAGATTTCTTCCATTGCAACAAGGTATTTTATGTTTCCTAGCTGCCATGGCATTTTCCGCCGAGTATCTTCTATTCTCCTTTCATTCAACATCACATAAAGGTCTCGAGGGCTATTACCACACCCTCCTCGTCTTCCAAATAGGACTATGCATTTTATCTTCAATTGCCGGAGCCCTTCTTCCAAACAACTTTCCAGCCGATTTATGCAACGGCATCGCTTTAGCGCTGCAAGGCATATGGTTCTATCAAACTGCTTTTGTTCTTTATGGCCCTATGATACCAGATGGTTGCAAGATTAAGGACAACAAGATCATGTGTAATTCAGTTGACAGTGAGATTCGCGGCGAGTTGCTAGCTAACTTTCAGCTCTTTGTTGCCATCCTTTCGGTTCTTGTTGGTACTGTAGCAGCTTATGTATTTGCAGCTTCAAGATATGCAAATTCTGAAGTTAATGATTTGCATACAATTCAGGATGGATTAGATCAAAACTGA

Protein sequence

>MsG0480022274.01.T01

MGSFKGHALPGTLFFVVGVWHIWASIVRYVRNPKTFRVRAWNPVPGFDGRLKYLELYVVAIGAFIDLCVEFLYSTHLKIIVGGVLNPSHMNDFEHSGMLLMFFIYGVVALLSEKTRFLPLQQGILCFLAAMAFSAEYLLFSFHSTSHKGLEGYYHTLLVFQIGLCILSSIAGALLPNNFPADLCNGIALALQGIWFYQTAFVLYGPMIPDGCKIKDNKIMCNSVDSEIRGELLANFQLFVAILSVLVGTVAAYVFAASRYANSEVNDLHTIQDGLDQN*