AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180006239.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006239.01.T01 MTR_1g116540 84.778 427 33 10 1 401 1 421 0.0 681
MsG0180006239.01.T01 MTR_1g116540 84.038 426 36 10 1 400 1 420 0.0 672
MsG0180006239.01.T01 MTR_1g116540 81.609 435 40 11 1 401 1 429 0.0 657
MsG0180006239.01.T01 MTR_1g116540 80.876 434 43 11 1 400 1 428 0.0 647
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006239.01.T01 AT2G43235 47.851 349 145 8 78 398 96 435 1.14e-96 296

Find 115 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTACTTCAGTTCATATTAA+TGG 0.156695 1:+101755899 MsG0180006239.01.T01:CDS
GTGATGGTGGTGGTGGTAGT+AGG 0.227752 1:-101754181 None:intergenic
CGTCAATTATGCAGAAATTC+TGG 0.263143 1:+101755672 MsG0180006239.01.T01:CDS
CGACTAACCATCTCCATTTC+AGG 0.280124 1:-101757290 None:intergenic
TTGGCATTGGGATTATTAAT+AGG 0.296439 1:-101754664 None:intergenic
TATTGTTTGAATTGGTTTCT+AGG 0.296767 1:+101754434 MsG0180006239.01.T01:CDS
AAATGCATCTACCTACAATA+AGG 0.303394 1:+101754474 MsG0180006239.01.T01:CDS
TGTATTCATCTTGTTCAGTT+AGG 0.309416 1:-101754702 None:intergenic
AAGCACCTTATGTTTCTCTT+TGG 0.310733 1:+101757347 MsG0180006239.01.T01:CDS
TGAAACGAATTGACGAATAT+TGG 0.311467 1:-101754266 None:intergenic
CTACAATAAGGGTATTATTA+TGG 0.313025 1:+101754486 MsG0180006239.01.T01:CDS
AGAGGTGGTGCTGCTGTGAA+TGG 0.313201 1:-101754563 None:intergenic
CCTTCCACCTTGCACTTCAT+AGG 0.346159 1:+101754367 MsG0180006239.01.T01:CDS
CTGTTGAACCTACAACTATT+CGG 0.355323 1:+101755706 MsG0180006239.01.T01:CDS
GGCAAACATGTTGATGCTTT+AGG 0.356797 1:+101756522 MsG0180006239.01.T01:CDS
GATTCTCAACAATTCCTTGC+TGG 0.359006 1:+101755926 MsG0180006239.01.T01:CDS
GAGGTGGTGCTGCTGTGAAT+GGG 0.360116 1:-101754562 None:intergenic
GTCTTTGAAGAATAATAATA+AGG 0.368500 1:+101754603 MsG0180006239.01.T01:CDS
ATTAATAGGTGGCCACCATT+TGG 0.371214 1:-101754650 None:intergenic
TTCAAAGACCGCTTAATTGA+CGG 0.375232 1:-101754589 None:intergenic
TTTGAGTTTATTGTGGTGTT+TGG 0.378584 1:-101754149 None:intergenic
GATAAGCATGGTTGTGGAAA+TGG 0.383399 1:-101754079 None:intergenic
TTTGAGGGTATTGTTTGAAT+TGG 0.385299 1:+101754426 MsG0180006239.01.T01:CDS
TGTCTCCTTGCAGCCTGAAA+TGG 0.390978 1:+101757277 MsG0180006239.01.T01:intron
AAATGATGACTCTTCGGTTA+TGG 0.397070 1:-101754336 None:intergenic
CATAATAATACCCTTATTGT+AGG 0.403671 1:-101754485 None:intergenic
TTAATAGGTGGCCACCATTT+GGG 0.410087 1:-101754649 None:intergenic
GGTTATGGTCAAGAGTGAAT+AGG 0.416648 1:-101754321 None:intergenic
ATTTCCTCCCGAGGAATCTT+CGG 0.417407 1:+101756578 MsG0180006239.01.T01:CDS
CTCAAAGGAAATTGCCCAAA+TGG 0.421635 1:+101754635 MsG0180006239.01.T01:CDS
TGCAAGAGAAGCTCTTGGTT+TGG 0.423356 1:+101757400 MsG0180006239.01.T01:CDS
TGATGGTGGTGGTGGTAGTA+GGG 0.426177 1:-101754180 None:intergenic
ATCGCGGTATGCCTCTTTGC+CGG 0.429399 1:-101754290 None:intergenic
TGTTGAACCTACAACTATTC+GGG 0.435983 1:+101755707 MsG0180006239.01.T01:CDS
ATTCTCAACAATTCCTTGCT+GGG 0.439822 1:+101755927 MsG0180006239.01.T01:CDS
TGAAATGGAGATGGTTAGTC+GGG 0.443445 1:+101757292 MsG0180006239.01.T01:CDS
AGGTGGTGCTGCTGTGAATG+GGG 0.445776 1:-101754561 None:intergenic
CAGAGAGTTTGAGTTTATTG+TGG 0.446124 1:-101754156 None:intergenic
ATCTGCAAAATAGGGTTAGC+AGG 0.449273 1:-101757429 None:intergenic
AGAGAAGGTGGTGATGGTGG+TGG 0.455294 1:-101754191 None:intergenic
ATATCAAAAGCATTGGCATT+GGG 0.459121 1:-101754676 None:intergenic
GTTATGGTCAAGAGTGAATA+GGG 0.463939 1:-101754320 None:intergenic
GGTGGAAAAGAGGTGGTTGT+TGG 0.469675 1:+101754529 MsG0180006239.01.T01:CDS
GGTGGTGCTGCTGTGAATGG+GGG 0.472454 1:-101754560 None:intergenic
ATTCGTCAATTCGTTTCATC+CGG 0.474810 1:+101754271 MsG0180006239.01.T01:CDS
AATGCATCTACCTACAATAA+GGG 0.476176 1:+101754475 MsG0180006239.01.T01:CDS
CAAAGATATGCCTTCTTCTA+CGG 0.476956 1:+101756553 MsG0180006239.01.T01:CDS
TTATTATGGTGCGGAGAGAC+AGG 0.482055 1:+101754500 MsG0180006239.01.T01:CDS
CAAAACAGAAAAGGCAATGA+TGG 0.486059 1:-101754407 None:intergenic
GAAGGTGGTGATGGTGGTGG+TGG 0.486676 1:-101754188 None:intergenic
AAGGAGTCCCGAATAGTTGT+AGG 0.489624 1:-101755714 None:intergenic
GCTGGGTTTGCTGAAAACAT+TGG 0.494387 1:+101755944 MsG0180006239.01.T01:CDS
GGAAGAAGCGGAGACGAGGC+GGG 0.504022 1:-101754101 None:intergenic
GTGGTGCTGCTGTGAATGGG+GGG 0.508609 1:-101754559 None:intergenic
TTGACGAATATTGGAATCAA+AGG 0.510004 1:-101754257 None:intergenic
TTCGAGCTTGTGTTCAGAGA+AGG 0.512806 1:-101754206 None:intergenic
CATATCAAAAGCATTGGCAT+TGG 0.512854 1:-101754677 None:intergenic
CAATACCCTCAAAACAGAAA+AGG 0.514129 1:-101754416 None:intergenic
GGAACAGACCGAAGATTCCT+CGG 0.515504 1:-101756586 None:intergenic
GACATGAAATGATGACTCTT+CGG 0.518731 1:-101754342 None:intergenic
CAGGAGTCTTGGTGGAAAAG+AGG 0.524436 1:+101754519 MsG0180006239.01.T01:CDS
TTCAGAGAAGGTGGTGATGG+TGG 0.525379 1:-101754194 None:intergenic
CTGAACAAGATGAATACAAG+AGG 0.525744 1:+101754707 MsG0180006239.01.T01:CDS
AGGCGGGATAAGCATGGTTG+TGG 0.526418 1:-101754085 None:intergenic
CGAATATTGGAATCAAAGGA+AGG 0.534213 1:-101754253 None:intergenic
ATTAACTGATGCTCGATACA+AGG 0.536295 1:-101755733 None:intergenic
GGGATTGCAAGAGAAGCTCT+TGG 0.537168 1:+101757395 MsG0180006239.01.T01:CDS
GCAAAAGACAAGAGCGTGTG+CGG 0.541792 1:-101756015 None:intergenic
TGGTTTCTAGGTTTGCGTCA+TGG 0.542864 1:+101754446 MsG0180006239.01.T01:CDS
CAAAAGACAAGAGCGTGTGC+GGG 0.544785 1:-101756014 None:intergenic
CGGAGAGACAGGAGTCTTGG+TGG 0.547028 1:+101754511 MsG0180006239.01.T01:CDS
TTTGCAGTGAGGACAGTCAC+GGG 0.552218 1:+101757375 MsG0180006239.01.T01:CDS
GTGCGGAGAGACAGGAGTCT+TGG 0.557171 1:+101754508 MsG0180006239.01.T01:CDS
ATAAGGAAATTGTGTCTCAA+AGG 0.558092 1:+101754620 MsG0180006239.01.T01:CDS
TAGGTCCATATCAAAAGCAT+TGG 0.559057 1:-101754683 None:intergenic
GCGGCGACTGCGACGTACAA+AGG 0.562134 1:-101754122 None:intergenic
CTGAAATGGAGATGGTTAGT+CGG 0.564106 1:+101757291 MsG0180006239.01.T01:CDS
TGAACTGAAGTAGAGTAAGT+TGG 0.565051 1:-101755890 None:intergenic
CAAAGGAAGAAGCGGAGACG+AGG 0.566667 1:-101754105 None:intergenic
GTGTTCAGAGAAGGTGGTGA+TGG 0.568282 1:-101754197 None:intergenic
TTCAGTTCATATTAATGGCG+AGG 0.571469 1:+101755904 MsG0180006239.01.T01:CDS
CTTAATTGACGGCGCAGAGG+TGG 0.577365 1:-101754578 None:intergenic
GCATTGGGATTATTAATAGG+TGG 0.579291 1:-101754661 None:intergenic
AGGAAGAAGCGGAGACGAGG+CGG 0.588432 1:-101754102 None:intergenic
GAGCTTGTGTTCAGAGAAGG+TGG 0.588582 1:-101754203 None:intergenic
GAGGAAATATCCGTAGAAGA+AGG 0.589817 1:-101756563 None:intergenic
CTTGCAGCCTGAAATGGAGA+TGG 0.589877 1:+101757283 MsG0180006239.01.T01:intron
CTTTACCAAAGAGAAACATA+AGG 0.591688 1:-101757352 None:intergenic
CCTATGAAGTGCAAGGTGGA+AGG 0.605754 1:-101754367 None:intergenic
GAACAGACCGAAGATTCCTC+GGG 0.606284 1:-101756585 None:intergenic
GAAGATTGTGAGGTCTATGA+CGG 0.607214 1:-101754230 None:intergenic
GTTTGCAGTGAGGACAGTCA+CGG 0.610114 1:+101757374 MsG0180006239.01.T01:CDS
TTGCGGCACGAACATTCTCA+AGG 0.612164 1:-101755967 None:intergenic
AGCTGCAGACACAATTGTTG+CGG 0.612752 1:-101755984 None:intergenic
ATTCGTTTCATCCGGCAAAG+AGG 0.619371 1:+101754279 MsG0180006239.01.T01:CDS
TTATAGGCGTTGGAAATGCA+AGG 0.619881 1:+101756501 MsG0180006239.01.T01:intron
GAATATTGGAATCAAAGGAA+GGG 0.626660 1:-101754252 None:intergenic
AAAGGAAATTGCCCAAATGG+TGG 0.626680 1:+101754638 MsG0180006239.01.T01:CDS
TCTACGGATATTTCCTCCCG+AGG 0.628715 1:+101756569 MsG0180006239.01.T01:CDS
CCGCTTAATTGACGGCGCAG+AGG 0.630008 1:-101754581 None:intergenic
CAAAGGAAGGGAAGATTGTG+AGG 0.632587 1:-101754240 None:intergenic
GAGACGAGGCGGGATAAGCA+TGG 0.633362 1:-101754091 None:intergenic
TATTGTGGTGTTTGGTGCGG+CGG 0.636744 1:-101754141 None:intergenic
TGAAGTTCCTATGAAGTGCA+AGG 0.638935 1:-101754374 None:intergenic
CCTCTGCGCCGTCAATTAAG+CGG 0.643562 1:+101754581 MsG0180006239.01.T01:CDS
TGAACAAGATGAATACAAGA+GGG 0.644744 1:+101754708 MsG0180006239.01.T01:CDS
GCGACGTACAAAGGAAGAAG+CGG 0.648097 1:-101754113 None:intergenic
GAGTCTTGGTGGAAAAGAGG+TGG 0.656446 1:+101754522 MsG0180006239.01.T01:CDS
GTTTATTGTGGTGTTTGGTG+CGG 0.663714 1:-101754144 None:intergenic
CTTTGGTAAAGTTTGCAGTG+AGG 0.666887 1:+101757364 MsG0180006239.01.T01:CDS
ATAAGGGTATTATTATGGTG+CGG 0.682812 1:+101754491 MsG0180006239.01.T01:CDS
CAGACCGAAGATTCCTCGGG+AGG 0.694458 1:-101756582 None:intergenic
TGAATAGGGTCTGTAAATCG+CGG 0.700229 1:-101754306 None:intergenic
AGTTCCTATGAAGTGCAAGG+TGG 0.710148 1:-101754371 None:intergenic
GAAATGGAGATGGTTAGTCG+GGG 0.713332 1:+101757293 MsG0180006239.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCATTAAAATATCTAAAA+TGG - Chr1:101756818-101756837 None:intergenic 10.0%
!! CAATTAGTATATTTATTAAA+AGG - Chr1:101755434-101755453 None:intergenic 10.0%
!!! AAATCATTTTCTATAATAAA+TGG + Chr1:101755594-101755613 MsG0180006239.01.T01:intron 10.0%
!!! CTTTTAATAAATATACTAAT+TGG + Chr1:101755432-101755451 MsG0180006239.01.T01:intron 10.0%
!! AAATATTCATATAAGAAAAG+TGG - Chr1:101756652-101756671 None:intergenic 15.0%
!! AATATTCATATAAGAAAAGT+GGG - Chr1:101756651-101756670 None:intergenic 15.0%
!! TATTTGCAAATTATTGTTTA+AGG - Chr1:101756610-101756629 None:intergenic 15.0%
!! TTATCCTTTATTATTAACAA+CGG + Chr1:101756736-101756755 MsG0180006239.01.T01:intron 15.0%
!!! ATATCTAAAATGGATAAATA+TGG - Chr1:101756808-101756827 None:intergenic 15.0%
!!! GTTAAATATGAATATTTTCA+AGG + Chr1:101756251-101756270 MsG0180006239.01.T01:intron 15.0%
!!! TATTAAAAGGAATTAAGTTT+TGG - Chr1:101755421-101755440 None:intergenic 15.0%
!!! TTTTTGGTTTTTTCAATTAT+AGG + Chr1:101756485-101756504 MsG0180006239.01.T01:intron 15.0%
!! AATAATAAAGGATAACTATG+AGG - Chr1:101756731-101756750 None:intergenic 20.0%
!! AATACTCCATTAAAATTCAT+GGG + Chr1:101756462-101756481 MsG0180006239.01.T01:intron 20.0%
!! ACAACATTTAAGAAAGATTT+AGG - Chr1:101756212-101756231 None:intergenic 20.0%
!! TAATTCTTTATGCATAAATG+AGG + Chr1:101756878-101756897 MsG0180006239.01.T01:intron 20.0%
!! TTCAATAGCTAATTAATCTA+AGG - Chr1:101755234-101755253 None:intergenic 20.0%
!!! AAAGAAAACGTTTGAAATTT+CGG + Chr1:101757015-101757034 MsG0180006239.01.T01:intron 20.0%
!!! GTCTTTGAAGAATAATAATA+AGG + Chr1:101754603-101754622 MsG0180006239.01.T01:CDS 20.0%
!!! TACTGATGTGAAATTTTTTT+TGG + Chr1:101755630-101755649 MsG0180006239.01.T01:intron 20.0%
! AACTCCGTTGTTAATAATAA+AGG - Chr1:101756743-101756762 None:intergenic 25.0%
! AATTGAGAAACTTTAATGAG+TGG - Chr1:101756957-101756976 None:intergenic 25.0%
! ATTGCTATACATGTTTGAAA+TGG + Chr1:101757126-101757145 MsG0180006239.01.T01:intron 25.0%
! CATAATAATACCCTTATTGT+AGG - Chr1:101754488-101754507 None:intergenic 25.0%
! CTCTCTAATTGTACTTATTT+GGG + Chr1:101757253-101757272 MsG0180006239.01.T01:intron 25.0%
! GAATACTCCATTAAAATTCA+TGG + Chr1:101756461-101756480 MsG0180006239.01.T01:intron 25.0%
! TAAGGATGAAGTAAATGAAT+GGG - Chr1:101755216-101755235 None:intergenic 25.0%
! TATAGAGAACAAAACACATT+GGG + Chr1:101757067-101757086 MsG0180006239.01.T01:intron 25.0%
! TCTACTTCAGTTCATATTAA+TGG + Chr1:101755899-101755918 MsG0180006239.01.T01:CDS 25.0%
! TCTCTAATTGTACTTATTTG+GGG + Chr1:101757254-101757273 MsG0180006239.01.T01:intron 25.0%
! TCTTTCTTGTCTTGTATTAT+AGG + Chr1:101755036-101755055 MsG0180006239.01.T01:intron 25.0%
! TGAAAATTTCTCATGTTAGT+TGG - Chr1:101754887-101754906 None:intergenic 25.0%
! TTACTCTTAATCTTATGATC+TGG + Chr1:101756055-101756074 MsG0180006239.01.T01:intron 25.0%
!! AAGAAAACGTTTGAAATTTC+GGG + Chr1:101757016-101757035 MsG0180006239.01.T01:intron 25.0%
!! AATGAGGAGTAAATATTTTC+TGG + Chr1:101756894-101756913 MsG0180006239.01.T01:intron 25.0%
!! ATGAGGAGTAAATATTTTCT+GGG + Chr1:101756895-101756914 MsG0180006239.01.T01:intron 25.0%
!! CAAAAACCCATGAATTTTAA+TGG - Chr1:101756471-101756490 None:intergenic 25.0%
!! CAAGGTTATATTTTCTATGA+TGG + Chr1:101756269-101756288 MsG0180006239.01.T01:intron 25.0%
!! CATTAAAATTCATGGGTTTT+TGG + Chr1:101756469-101756488 MsG0180006239.01.T01:intron 25.0%
!! TAAGTTGCAAGTTGAATTAA+AGG - Chr1:101755108-101755127 None:intergenic 25.0%
!! TATTGTTTGAATTGGTTTCT+AGG + Chr1:101754434-101754453 MsG0180006239.01.T01:CDS 25.0%
!!! ATAAGCATTAGATGTTGTTT+TGG + Chr1:101757162-101757181 MsG0180006239.01.T01:intron 25.0%
!!! CTACAATAAGGGTATTATTA+TGG + Chr1:101754486-101754505 MsG0180006239.01.T01:CDS 25.0%
AAATCATAAATCAGCAGACA+AGG - Chr1:101757217-101757236 None:intergenic 30.0%
AAATGCATCTACCTACAATA+AGG + Chr1:101754474-101754493 MsG0180006239.01.T01:CDS 30.0%
AACTTGAATGATATCATGGT+CGG - Chr1:101755183-101755202 None:intergenic 30.0%
AAGGATGAAGTAAATGAATG+GGG - Chr1:101755215-101755234 None:intergenic 30.0%
AATGCATCTACCTACAATAA+GGG + Chr1:101754475-101754494 MsG0180006239.01.T01:CDS 30.0%
ACATATCTACGAGAGTAAAT+TGG - Chr1:101754857-101754876 None:intergenic 30.0%
ACATCTAATGCTTATCTCTA+TGG - Chr1:101757157-101757176 None:intergenic 30.0%
ACTCAAATGAAAGAACTAGA+TGG + Chr1:101756294-101756313 MsG0180006239.01.T01:intron 30.0%
ATAAGGAAATTGTGTCTCAA+AGG + Chr1:101754620-101754639 MsG0180006239.01.T01:CDS 30.0%
ATGAGGAGTAAATGAATGAA+GGG - Chr1:101754775-101754794 None:intergenic 30.0%
CAATTTAGAGAGCTTACAAT+TGG - Chr1:101756338-101756357 None:intergenic 30.0%
CTAAGGATGAAGTAAATGAA+TGG - Chr1:101755217-101755236 None:intergenic 30.0%
CTCAAATGAAAGAACTAGAT+GGG + Chr1:101756295-101756314 MsG0180006239.01.T01:intron 30.0%
CTTCCTAGAAAAAGAGTTAT+CGG - Chr1:101756423-101756442 None:intergenic 30.0%
CTTTACCAAAGAGAAACATA+AGG - Chr1:101757355-101757374 None:intergenic 30.0%
GAATATTGGAATCAAAGGAA+GGG - Chr1:101754255-101754274 None:intergenic 30.0%
GACTAACTTGAATGATATCA+TGG - Chr1:101755187-101755206 None:intergenic 30.0%
GCTCTCTAATTGTACTTATT+TGG + Chr1:101757252-101757271 MsG0180006239.01.T01:intron 30.0%
GTATAGAGAACAAAACACAT+TGG + Chr1:101757066-101757085 MsG0180006239.01.T01:intron 30.0%
GTTCTTGGCTATTAGAAATT+TGG + Chr1:101756778-101756797 MsG0180006239.01.T01:intron 30.0%
TAAGCTCTCTAAATTGATCA+GGG + Chr1:101756342-101756361 MsG0180006239.01.T01:intron 30.0%
TCAACATCAAAGTAAACATG+AGG - Chr1:101754792-101754811 None:intergenic 30.0%
TCTATATCTACACAAAACCA+CGG - Chr1:101755475-101755494 None:intergenic 30.0%
TGAAACGAATTGACGAATAT+TGG - Chr1:101754269-101754288 None:intergenic 30.0%
TGAACAAGATGAATACAAGA+GGG + Chr1:101754708-101754727 MsG0180006239.01.T01:CDS 30.0%
TGTAACTACTAGCATTCTAA+AGG + Chr1:101756122-101756141 MsG0180006239.01.T01:intron 30.0%
TGTATTCATCTTGTTCAGTT+AGG - Chr1:101754705-101754724 None:intergenic 30.0%
TGTTCTCTTTATTCCTTACT+CGG + Chr1:101756678-101756697 MsG0180006239.01.T01:intron 30.0%
TTAATGAGTGGTTATACAGA+TGG - Chr1:101756945-101756964 None:intergenic 30.0%
TTGACGAATATTGGAATCAA+AGG - Chr1:101754260-101754279 None:intergenic 30.0%
! AAGGCAGTTATATTTTCACT+CGG + Chr1:101756141-101756160 MsG0180006239.01.T01:intron 30.0%
! AGAAAACGTTTGAAATTTCG+GGG + Chr1:101757017-101757036 MsG0180006239.01.T01:intron 30.0%
! CATTTAAGTTACACACTTTC+AGG - Chr1:101756384-101756403 None:intergenic 30.0%
! TAATGATTTGTCTTTCACTC+CGG + Chr1:101756830-101756849 MsG0180006239.01.T01:intron 30.0%
! TGAGGAGTAAATATTTTCTG+GGG + Chr1:101756896-101756915 MsG0180006239.01.T01:intron 30.0%
! TTGGCATTGGGATTATTAAT+AGG - Chr1:101754667-101754686 None:intergenic 30.0%
! TTTGAGTTTATTGTGGTGTT+TGG - Chr1:101754152-101754171 None:intergenic 30.0%
! TTTTGTTCTCTATACTACAG+AGG - Chr1:101757061-101757080 None:intergenic 30.0%
!! AATCTTGTCTTTTAGCCTTT+GGG + Chr1:101756079-101756098 MsG0180006239.01.T01:intron 30.0%
!! ATAAGGGTATTATTATGGTG+CGG + Chr1:101754491-101754510 MsG0180006239.01.T01:CDS 30.0%
!! ATATCAAAAGCATTGGCATT+GGG - Chr1:101754679-101754698 None:intergenic 30.0%
!! ATTTTAATGGAGTATTCACG+TGG - Chr1:101756458-101756477 None:intergenic 30.0%
!! TAATCTTGTCTTTTAGCCTT+TGG + Chr1:101756078-101756097 MsG0180006239.01.T01:intron 30.0%
!! TTTGAGGGTATTGTTTGAAT+TGG + Chr1:101754426-101754445 MsG0180006239.01.T01:CDS 30.0%
!! TTTTAATGGAGTATTCACGT+GGG - Chr1:101756457-101756476 None:intergenic 30.0%
!!! GTTTTTTCAATTATAGGCGT+TGG + Chr1:101756491-101756510 MsG0180006239.01.T01:intron 30.0%
AAATCCTATCATACCGAGTA+AGG - Chr1:101756694-101756713 None:intergenic 35.0%
AAATGATGACTCTTCGGTTA+TGG - Chr1:101754339-101754358 None:intergenic 35.0%
AAGCACCTTATGTTTCTCTT+TGG + Chr1:101757347-101757366 MsG0180006239.01.T01:CDS 35.0%
ACAATCTAGTAGAAACCCAA+AGG - Chr1:101756097-101756116 None:intergenic 35.0%
ACATGAGAGTTGAAAGTAAG+AGG - Chr1:101754965-101754984 None:intergenic 35.0%
ACCATTTATGTCAGTGTTCT+TGG + Chr1:101756763-101756782 MsG0180006239.01.T01:intron 35.0%
ACGAGTGAATTTACGTTTAC+CGG - Chr1:101756852-101756871 None:intergenic 35.0%
AGAGTATAGTAAAGGACCAA+AGG - Chr1:101755329-101755348 None:intergenic 35.0%
AGCAATTATCGACAGTAGAA+TGG + Chr1:101755142-101755161 MsG0180006239.01.T01:intron 35.0%
ATTAACTGATGCTCGATACA+AGG - Chr1:101755736-101755755 None:intergenic 35.0%
ATTCGTCAATTCGTTTCATC+CGG + Chr1:101754271-101754290 MsG0180006239.01.T01:CDS 35.0%
ATTCTACTGTCGATAATTGC+TGG - Chr1:101755143-101755162 None:intergenic 35.0%
ATTCTCAACAATTCCTTGCT+GGG + Chr1:101755927-101755946 MsG0180006239.01.T01:CDS 35.0%
CAAAACAGAAAAGGCAATGA+TGG - Chr1:101754410-101754429 None:intergenic 35.0%
CAAAGATATGCCTTCTTCTA+CGG + Chr1:101756553-101756572 MsG0180006239.01.T01:CDS 35.0%
CAATACCCTCAAAACAGAAA+AGG - Chr1:101754419-101754438 None:intergenic 35.0%
CATGAGGAGTAAATGAATGA+AGG - Chr1:101754776-101754795 None:intergenic 35.0%
CGAATATTGGAATCAAAGGA+AGG - Chr1:101754256-101754275 None:intergenic 35.0%
CGTCAATTATGCAGAAATTC+TGG + Chr1:101755672-101755691 MsG0180006239.01.T01:CDS 35.0%
CTGAACAAGATGAATACAAG+AGG + Chr1:101754707-101754726 MsG0180006239.01.T01:CDS 35.0%
CTGTTGAACCTACAACTATT+CGG + Chr1:101755706-101755725 MsG0180006239.01.T01:CDS 35.0%
GACATGAAATGATGACTCTT+CGG - Chr1:101754345-101754364 None:intergenic 35.0%
GAGTATAGTAAAGGACCAAA+GGG - Chr1:101755328-101755347 None:intergenic 35.0%
GCATTGGGATTATTAATAGG+TGG - Chr1:101754664-101754683 None:intergenic 35.0%
GTAAGCTCTCTAAATTGATC+AGG + Chr1:101756341-101756360 MsG0180006239.01.T01:intron 35.0%
GTTATGGTCAAGAGTGAATA+GGG - Chr1:101754323-101754342 None:intergenic 35.0%
TAATGCTTATCTCTATGGAG+TGG - Chr1:101757152-101757171 None:intergenic 35.0%
TATCTACGAGAGTAAATTGG+AGG - Chr1:101754854-101754873 None:intergenic 35.0%
TATTCCTTACTCGGTATGAT+AGG + Chr1:101756687-101756706 MsG0180006239.01.T01:intron 35.0%
TGAACTGAAGTAGAGTAAGT+TGG - Chr1:101755893-101755912 None:intergenic 35.0%
TGTTGAACCTACAACTATTC+GGG + Chr1:101755707-101755726 MsG0180006239.01.T01:CDS 35.0%
TTACTCGGTATGATAGGATT+TGG + Chr1:101756693-101756712 MsG0180006239.01.T01:intron 35.0%
TTCAAAGACCGCTTAATTGA+CGG - Chr1:101754592-101754611 None:intergenic 35.0%
TTCAGTTCATATTAATGGCG+AGG + Chr1:101755904-101755923 MsG0180006239.01.T01:CDS 35.0%
TTGAAATTTCGGGGAAGTAA+CGG + Chr1:101757026-101757045 MsG0180006239.01.T01:intron 35.0%
! ATTTTCACTCGGAATACTGT+TGG + Chr1:101756152-101756171 MsG0180006239.01.T01:intron 35.0%
! CAATGCCAATGCTTTTGATA+TGG + Chr1:101754678-101754697 MsG0180006239.01.T01:CDS 35.0%
! CAGAGAGTTTGAGTTTATTG+TGG - Chr1:101754159-101754178 None:intergenic 35.0%
! CTTTGATGTTGATTGAGTGA+AGG + Chr1:101754800-101754819 MsG0180006239.01.T01:intron 35.0%
! TAGGTCCATATCAAAAGCAT+TGG - Chr1:101754686-101754705 None:intergenic 35.0%
! TCATTGCCTTTTCTGTTTTG+AGG + Chr1:101754410-101754429 MsG0180006239.01.T01:CDS 35.0%
! TTTCTGGGGAAATTTAGATG+AGG + Chr1:101756910-101756929 MsG0180006239.01.T01:intron 35.0%
!! CATATCAAAAGCATTGGCAT+TGG - Chr1:101754680-101754699 None:intergenic 35.0%
!! CATTGCCTTTTCTGTTTTGA+GGG + Chr1:101754411-101754430 MsG0180006239.01.T01:CDS 35.0%
!!! AGATGTTGTTTTGGATGAGT+AGG + Chr1:101757171-101757190 MsG0180006239.01.T01:intron 35.0%
AAAGGAAATTGCCCAAATGG+TGG + Chr1:101754638-101754657 MsG0180006239.01.T01:CDS 40.0%
ATTAATAGGTGGCCACCATT+TGG - Chr1:101754653-101754672 None:intergenic 40.0%
CCTAGAAAAAGAGTTATCGG+AGG - Chr1:101756420-101756439 None:intergenic 40.0%
CTCAAAGGAAATTGCCCAAA+TGG + Chr1:101754635-101754654 MsG0180006239.01.T01:CDS 40.0%
CTGAAATGGAGATGGTTAGT+CGG + Chr1:101757291-101757310 MsG0180006239.01.T01:CDS 40.0%
CTTTGGTAAAGTTTGCAGTG+AGG + Chr1:101757364-101757383 MsG0180006239.01.T01:CDS 40.0%
GAAGATTGTGAGGTCTATGA+CGG - Chr1:101754233-101754252 None:intergenic 40.0%
GAGGAAATATCCGTAGAAGA+AGG - Chr1:101756566-101756585 None:intergenic 40.0%
GATAAGCATGGTTGTGGAAA+TGG - Chr1:101754082-101754101 None:intergenic 40.0%
GATTCTCAACAATTCCTTGC+TGG + Chr1:101755926-101755945 MsG0180006239.01.T01:CDS 40.0%
GCCAAGAACACTGACATAAA+TGG - Chr1:101756767-101756786 None:intergenic 40.0%
GCTACCTAGCAGTAAAGAAA+GGG - Chr1:101755811-101755830 None:intergenic 40.0%
GCTGTGGTAGAGTATAGTAA+AGG - Chr1:101755337-101755356 None:intergenic 40.0%
GGCAAACATGTTGATGCTTT+AGG + Chr1:101756522-101756541 MsG0180006239.01.T01:CDS 40.0%
GGTTATGGTCAAGAGTGAAT+AGG - Chr1:101754324-101754343 None:intergenic 40.0%
TATCTTCTATGCTGTAGCTG+TGG - Chr1:101755353-101755372 None:intergenic 40.0%
TGAAGTTCCTATGAAGTGCA+AGG - Chr1:101754377-101754396 None:intergenic 40.0%
TGAATAGGGTCTGTAAATCG+CGG - Chr1:101754309-101754328 None:intergenic 40.0%
TGCTACCTAGCAGTAAAGAA+AGG - Chr1:101755812-101755831 None:intergenic 40.0%
TTAATAGGTGGCCACCATTT+GGG - Chr1:101754652-101754671 None:intergenic 40.0%
! ATGGTCGGATATGTCTTTTG+CGG - Chr1:101755168-101755187 None:intergenic 40.0%
! CCTCCGATAACTCTTTTTCT+AGG + Chr1:101756417-101756436 MsG0180006239.01.T01:intron 40.0%
! GTTTATTGTGGTGTTTGGTG+CGG - Chr1:101754147-101754166 None:intergenic 40.0%
! TGAAATGGAGATGGTTAGTC+GGG + Chr1:101757292-101757311 MsG0180006239.01.T01:CDS 40.0%
!! GTTTTGGATGAGTAGGTAGA+GGG + Chr1:101757178-101757197 MsG0180006239.01.T01:intron 40.0%
!! TGTTTTGGATGAGTAGGTAG+AGG + Chr1:101757177-101757196 MsG0180006239.01.T01:intron 40.0%
!! TTATAGGCGTTGGAAATGCA+AGG + Chr1:101756501-101756520 MsG0180006239.01.T01:intron 40.0%
!!! TTGTTTTAGATGCTTGCAGC+AGG + Chr1:101755757-101755776 MsG0180006239.01.T01:CDS 40.0%
AAGGAGTCCCGAATAGTTGT+AGG - Chr1:101755717-101755736 None:intergenic 45.0%
AGCTGCAGACACAATTGTTG+CGG - Chr1:101755987-101756006 None:intergenic 45.0%
AGTTCCTATGAAGTGCAAGG+TGG - Chr1:101754374-101754393 None:intergenic 45.0%
ATTCGTTTCATCCGGCAAAG+AGG + Chr1:101754279-101754298 MsG0180006239.01.T01:CDS 45.0%
ATTTCCTCCCGAGGAATCTT+CGG + Chr1:101756578-101756597 MsG0180006239.01.T01:CDS 45.0%
CAAAGGAAGGGAAGATTGTG+AGG - Chr1:101754243-101754262 None:intergenic 45.0%
CATAAAGATACGTGCTACCG+TGG + Chr1:101755455-101755474 MsG0180006239.01.T01:intron 45.0%
CGACTAACCATCTCCATTTC+AGG - Chr1:101757293-101757312 None:intergenic 45.0%
CTATGCAGTTGCACTAACTC+AGG - Chr1:101755388-101755407 None:intergenic 45.0%
GAGATATCTTTCACGCCCTT+TGG + Chr1:101755310-101755329 MsG0180006239.01.T01:intron 45.0%
GTGTCCCTTTCTTTACTGCT+AGG + Chr1:101755804-101755823 MsG0180006239.01.T01:intron 45.0%
TGCAAGAGAAGCTCTTGGTT+TGG + Chr1:101757400-101757419 MsG0180006239.01.T01:CDS 45.0%
TTATTATGGTGCGGAGAGAC+AGG + Chr1:101754500-101754519 MsG0180006239.01.T01:CDS 45.0%
TTCGAGCTTGTGTTCAGAGA+AGG - Chr1:101754209-101754228 None:intergenic 45.0%
! CTCTTGTCTTTTGCAGGCTT+GGG + Chr1:101756024-101756043 MsG0180006239.01.T01:CDS 45.0%
! GAAATGGAGATGGTTAGTCG+GGG + Chr1:101757293-101757312 MsG0180006239.01.T01:CDS 45.0%
! TGGTTTCTAGGTTTGCGTCA+TGG + Chr1:101754446-101754465 MsG0180006239.01.T01:CDS 45.0%
! TGTTTTCAGCAAACCCAGCA+AGG - Chr1:101755943-101755962 None:intergenic 45.0%
!! GCTGGGTTTGCTGAAAACAT+TGG + Chr1:101755944-101755963 MsG0180006239.01.T01:CDS 45.0%
AAAGAAAGGGACACAGACGC+AGG - Chr1:101755798-101755817 None:intergenic 50.0%
CAGGAGTCTTGGTGGAAAAG+AGG + Chr1:101754519-101754538 MsG0180006239.01.T01:CDS 50.0%
CATCTCCATTTCAGGCTGCA+AGG - Chr1:101757285-101757304 None:intergenic 50.0%
CCTATGAAGTGCAAGGTGGA+AGG - Chr1:101754370-101754389 None:intergenic 50.0%
CCTTCCACCTTGCACTTCAT+AGG + Chr1:101754367-101754386 MsG0180006239.01.T01:CDS 50.0%
CTTGCAGCCTGAAATGGAGA+TGG + Chr1:101757283-101757302 MsG0180006239.01.T01:intron 50.0%
GAACAGACCGAAGATTCCTC+GGG - Chr1:101756588-101756607 None:intergenic 50.0%
GAGCTTGTGTTCAGAGAAGG+TGG - Chr1:101754206-101754225 None:intergenic 50.0%
GAGTCTTGGTGGAAAAGAGG+TGG + Chr1:101754522-101754541 MsG0180006239.01.T01:CDS 50.0%
GATGCTTACAGACTCGTTCG+AGG + Chr1:101754730-101754749 MsG0180006239.01.T01:intron 50.0%
GCGACGTACAAAGGAAGAAG+CGG - Chr1:101754116-101754135 None:intergenic 50.0%
GGAACAGACCGAAGATTCCT+CGG - Chr1:101756589-101756608 None:intergenic 50.0%
GGGATTGCAAGAGAAGCTCT+TGG + Chr1:101757395-101757414 MsG0180006239.01.T01:CDS 50.0%
GGTGGAAAAGAGGTGGTTGT+TGG + Chr1:101754529-101754548 MsG0180006239.01.T01:CDS 50.0%
GTGTTCAGAGAAGGTGGTGA+TGG - Chr1:101754200-101754219 None:intergenic 50.0%
GTTTGCAGTGAGGACAGTCA+CGG + Chr1:101757374-101757393 MsG0180006239.01.T01:CDS 50.0%
TCTACGGATATTTCCTCCCG+AGG + Chr1:101756569-101756588 MsG0180006239.01.T01:CDS 50.0%
TGTCTCCTTGCAGCCTGAAA+TGG + Chr1:101757277-101757296 MsG0180006239.01.T01:intron 50.0%
TTGCGGCACGAACATTCTCA+AGG - Chr1:101755970-101755989 None:intergenic 50.0%
TTTGCAGTGAGGACAGTCAC+GGG + Chr1:101757375-101757394 MsG0180006239.01.T01:CDS 50.0%
! CAAAAGACAAGAGCGTGTGC+GGG - Chr1:101756017-101756036 None:intergenic 50.0%
! CACACGCTCTTGTCTTTTGC+AGG + Chr1:101756018-101756037 MsG0180006239.01.T01:CDS 50.0%
! GCAAAAGACAAGAGCGTGTG+CGG - Chr1:101756018-101756037 None:intergenic 50.0%
! GCTCTTGTCTTTTGCAGGCT+TGG + Chr1:101756023-101756042 MsG0180006239.01.T01:CDS 50.0%
!! TATTGTGGTGTTTGGTGCGG+CGG - Chr1:101754144-101754163 None:intergenic 50.0%
!! TGATGGTGGTGGTGGTAGTA+GGG - Chr1:101754183-101754202 None:intergenic 50.0%
!! TTCAGAGAAGGTGGTGATGG+TGG - Chr1:101754197-101754216 None:intergenic 50.0%
AGGCGGGATAAGCATGGTTG+TGG - Chr1:101754088-101754107 None:intergenic 55.0%
ATCGCGGTATGCCTCTTTGC+CGG - Chr1:101754293-101754312 None:intergenic 55.0%
CAAAGGAAGAAGCGGAGACG+AGG - Chr1:101754108-101754127 None:intergenic 55.0%
CCTCTGCGCCGTCAATTAAG+CGG + Chr1:101754581-101754600 MsG0180006239.01.T01:CDS 55.0%
CTTAATTGACGGCGCAGAGG+TGG - Chr1:101754581-101754600 None:intergenic 55.0%
GCAGTTGCACTAACTCAGGC+AGG - Chr1:101755384-101755403 None:intergenic 55.0%
!! AGAGAAGGTGGTGATGGTGG+TGG - Chr1:101754194-101754213 None:intergenic 55.0%
!! AGAGGTGGTGCTGCTGTGAA+TGG - Chr1:101754566-101754585 None:intergenic 55.0%
!! AGGTGGTGCTGCTGTGAATG+GGG - Chr1:101754564-101754583 None:intergenic 55.0%
!! GAGGTGGTGCTGCTGTGAAT+GGG - Chr1:101754565-101754584 None:intergenic 55.0%
!! GTGATGGTGGTGGTGGTAGT+AGG - Chr1:101754184-101754203 None:intergenic 55.0%
AGGAAGAAGCGGAGACGAGG+CGG - Chr1:101754105-101754124 None:intergenic 60.0%
CAGACCGAAGATTCCTCGGG+AGG - Chr1:101756585-101756604 None:intergenic 60.0%
CCGCTTAATTGACGGCGCAG+AGG - Chr1:101754584-101754603 None:intergenic 60.0%
CGGAGAGACAGGAGTCTTGG+TGG + Chr1:101754511-101754530 MsG0180006239.01.T01:CDS 60.0%
GAGACGAGGCGGGATAAGCA+TGG - Chr1:101754094-101754113 None:intergenic 60.0%
GTGCGGAGAGACAGGAGTCT+TGG + Chr1:101754508-101754527 MsG0180006239.01.T01:CDS 60.0%
!! GAAGGTGGTGATGGTGGTGG+TGG - Chr1:101754191-101754210 None:intergenic 60.0%
!! GGTGGTGCTGCTGTGAATGG+GGG - Chr1:101754563-101754582 None:intergenic 60.0%
!! GTGGTGCTGCTGTGAATGGG+GGG - Chr1:101754562-101754581 None:intergenic 60.0%
GCGGCGACTGCGACGTACAA+AGG - Chr1:101754125-101754144 None:intergenic 65.0%
GGAAGAAGCGGAGACGAGGC+GGG - Chr1:101754104-101754123 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 101754049 101757436 101754049 ID=MsG0180006239.01;Name=MsG0180006239.01
Chr1 mRNA 101754049 101757436 101754049 ID=MsG0180006239.01.T01;Parent=MsG0180006239.01;Name=MsG0180006239.01.T01;_AED=0.46;_eAED=0.47;_QI=0|0.75|0.6|1|1|1|5|0|401
Chr1 exon 101754049 101754744 101754049 ID=MsG0180006239.01.T01:exon:15231;Parent=MsG0180006239.01.T01
Chr1 exon 101755669 101755778 101755669 ID=MsG0180006239.01.T01:exon:15232;Parent=MsG0180006239.01.T01
Chr1 exon 101755886 101756045 101755886 ID=MsG0180006239.01.T01:exon:15233;Parent=MsG0180006239.01.T01
Chr1 exon 101756507 101756599 101756507 ID=MsG0180006239.01.T01:exon:15234;Parent=MsG0180006239.01.T01
Chr1 exon 101757290 101757436 101757290 ID=MsG0180006239.01.T01:exon:15235;Parent=MsG0180006239.01.T01
Chr1 CDS 101754049 101754744 101754049 ID=MsG0180006239.01.T01:cds;Parent=MsG0180006239.01.T01
Chr1 CDS 101755669 101755778 101755669 ID=MsG0180006239.01.T01:cds;Parent=MsG0180006239.01.T01
Chr1 CDS 101755886 101756045 101755886 ID=MsG0180006239.01.T01:cds;Parent=MsG0180006239.01.T01
Chr1 CDS 101756507 101756599 101756507 ID=MsG0180006239.01.T01:cds;Parent=MsG0180006239.01.T01
Chr1 CDS 101757290 101757436 101757290 ID=MsG0180006239.01.T01:cds;Parent=MsG0180006239.01.T01
Gene Sequence

>MsG0180006239.01.T01

ATGTTTTCTTCTTCTTCTTCTTTCACTCTTCCATTTCCACAACCATGCTTATCCCGCCTCGTCTCCGCTTCTTCCTTTGTACGTCGCAGTCGCCGCCGCACCAAACACCACAATAAACTCAAACTCTCTGACCCTACTACCACCACCACCATCACCACCTTCTCTGAACACAAGCTCGAAACCGTCATAGACCTCACAATCTTCCCTTCCTTTGATTCCAATATTCGTCAATTCGTTTCATCCGGCAAAGAGGCATACCGCGATTTACAGACCCTATTCACTCTTGACCATAACCGAAGAGTCATCATTTCATGTCGTCCTTCCACCTTGCACTTCATAGGAACTTCAGCTGTTTTAACCATCATTGCCTTTTCTGTTTTGAGGGTATTGTTTGAATTGGTTTCTAGGTTTGCGTCATGGCGTCGAAATGCATCTACCTACAATAAGGGTATTATTATGGTGCGGAGAGACAGGAGTCTTGGTGGAAAAGAGGTGGTTGTTGGATTGAGTCCCCCCATTCACAGCAGCACCACCTCTGCGCCGTCAATTAAGCGGTCTTTGAAGAATAATAATAAGGAAATTGTGTCTCAAAGGAAATTGCCCAAATGGTGGCCACCTATTAATAATCCCAATGCCAATGCTTTTGATATGGACCTAACTGAACAAGATGAATACAAGAGGGATGCTTACAGACTCTTACGTCAATTATGCAGAAATTCTGGTGTGCAAGTGTCTGTTGAACCTACAACTATTCGGGACTCCTTGTATCGAGCATCAGTTAATTTTGTTTTAGATGCTTGCAGCAGTGCACCAACTTACTCTACTTCAGTTCATATTAATGGCGAGGATTCTCAACAATTCCTTGCTGGGTTTGCTGAAAACATTGGCCTTGAGAATGTTCGTGCCGCAACAATTGTGTCTGCAGCTATAGCTGCCCGCACACGCTCTTGTCTTTTGCAGGCTTGGGCGTTGGAAATGCAAGGCAAACATGTTGATGCTTTAGGAGAACTGTCAAAGATATGCCTTCTTCTACGGATATTTCCTCCCGAGGAATCTTCGCCTGAAATGGAGATGGTTAGTCGGGGTCTAGAGAAACACTTGAAACTAGAACAAAGAAAGCACCTTATGTTTCTCTTTGGTAAAGTTTGCAGTGAGGACAGTCACGGGATTGCAAGAGAAGCTCTTGGTTTGGTACGAACCTGCTAA

Protein sequence

>MsG0180006239.01.T01

MFSSSSSFTLPFPQPCLSRLVSASSFVRRSRRRTKHHNKLKLSDPTTTTTITTFSEHKLETVIDLTIFPSFDSNIRQFVSSGKEAYRDLQTLFTLDHNRRVIISCRPSTLHFIGTSAVLTIIAFSVLRVLFELVSRFASWRRNASTYNKGIIMVRRDRSLGGKEVVVGLSPPIHSSTTSAPSIKRSLKNNNKEIVSQRKLPKWWPPINNPNANAFDMDLTEQDEYKRDAYRLLRQLCRNSGVQVSVEPTTIRDSLYRASVNFVLDACSSAPTYSTSVHINGEDSQQFLAGFAENIGLENVRAATIVSAAIAARTRSCLLQAWALEMQGKHVDALGELSKICLLLRIFPPEESSPEMEMVSRGLEKHLKLEQRKHLMFLFGKVCSEDSHGIAREALGLVRTC*