AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005613.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005613.01.T01 MTR_1g103820 88.839 224 17 3 1 221 1 219 4.18e-139 391
MsG0180005613.01.T01 MTR_8g045710 81.356 59 8 1 146 201 8 66 1.26e-25 98.2
MsG0180005613.01.T01 MTR_1g071390 43.333 120 16 2 100 219 1 68 1.79e-19 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005613.01.T01 AT4G14910 81.457 151 27 1 71 221 67 216 2.27e-85 254
MsG0180005613.01.T01 AT3G22425 84.397 141 22 0 81 221 74 214 3.29e-85 254
MsG0180005613.01.T01 AT4G14910 81.457 151 27 1 71 221 67 216 4.99e-85 255
MsG0180005613.01.T01 AT4G14910 81.457 151 27 1 71 221 67 216 6.15e-85 254
MsG0180005613.01.T01 AT3G22425 89.394 132 14 0 81 212 74 205 2.95e-84 251

Find 67 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTCTGTTTAAATACTTTA+TGG 0.117470 1:-93976165 MsG0180005613.01.T01:intron
TGTATCAGTTAAAATTAATT+TGG 0.145809 1:-93977902 MsG0180005613.01.T01:CDS
AAAATTAATTTGGATGGAAA+TGG 0.293645 1:-93977892 MsG0180005613.01.T01:CDS
GAACATCTCCGCCGCTGCTT+TGG 0.321234 1:-93978098 MsG0180005613.01.T01:CDS
GAAGATGTCGCTCTTGCTAT+TGG 0.325704 1:-93977106 MsG0180005613.01.T01:CDS
AAATTAATTTGGATGGAAAT+GGG 0.326506 1:-93977891 MsG0180005613.01.T01:CDS
GACCTTGTCCAGGATTTATC+TGG 0.333580 1:-93976259 MsG0180005613.01.T01:intron
ATCATTTCAGGTGCTAGAAT+TGG 0.340324 1:-93977955 MsG0180005613.01.T01:intron
CAGGCTTTGCTGCAGGCTCT+TGG 0.348810 1:-93976760 MsG0180005613.01.T01:CDS
GGGGTTGCTGATAATAGTTC+TGG 0.350949 1:-93977871 MsG0180005613.01.T01:CDS
GAAGTAAAACCTGAGTCAAT+TGG 0.354938 1:+93978043 None:intergenic
CCTCAAATATGCAGTTCAAA+AGG 0.364048 1:-93974964 MsG0180005613.01.T01:intron
AACTGATACATTAGTTTCCT+TGG 0.365756 1:+93977915 None:intergenic
CATCTCCGCCGCTGCTTTGG+TGG 0.367364 1:-93978095 MsG0180005613.01.T01:CDS
CTCAAATATGCAGTTCAAAA+GGG 0.398511 1:-93974963 MsG0180005613.01.T01:intron
TTCCGTCTCTGAAATCATCT+AGG 0.399239 1:-93978216 MsG0180005613.01.T01:CDS
ACATACCTACTCAGAGGGTT+GGG 0.407867 1:-93976210 MsG0180005613.01.T01:CDS
AAAAGTGGGCATGTTGGGTT+GGG 0.421518 1:+93978169 None:intergenic
TCATCTCCAGGCTTTGCTGC+AGG 0.425450 1:-93976767 MsG0180005613.01.T01:intron
TCAGTTAAAATTAATTTGGA+TGG 0.425680 1:-93977898 MsG0180005613.01.T01:CDS
TGCTGCAGGCTCTTGGTGAT+AGG 0.428704 1:-93976753 MsG0180005613.01.T01:CDS
ATCAAGCATATGATCAAGAA+AGG 0.443469 1:+93977843 None:intergenic
TCCGCCGCTGCTTTGGTGGA+TGG 0.445471 1:-93978091 MsG0180005613.01.T01:CDS
GATGATTTCAGAGACGGAAA+TGG 0.447710 1:+93978220 None:intergenic
ATTCAGTGAGGTGAGATTGC+GGG 0.447732 1:+93978129 None:intergenic
AGCATTAGTTCACGTTTCTC+TGG 0.449545 1:-93976686 MsG0180005613.01.T01:intron
TTTGAGTGCAACTGAGTTTG+TGG 0.451500 1:+93978250 None:intergenic
AAGTAAAACCTGAGTCAATT+GGG 0.453277 1:+93978044 None:intergenic
GTGATAGGAAGGGTATTAAC+CGG 0.453455 1:-93976738 MsG0180005613.01.T01:CDS
AGGAAGGGTATTAACCGGTT+TGG 0.454615 1:-93976733 MsG0180005613.01.T01:CDS
AGCAGCGGCGGAGATGTTCC+TGG 0.459063 1:+93978102 None:intergenic
CTAGAATTGGAGAGGTGAAA+AGG 0.463775 1:-93977942 MsG0180005613.01.T01:CDS
TTATCTGGCCGACCGCATCT+AGG 0.476067 1:-93976244 MsG0180005613.01.T01:CDS
AATTAATTTGGATGGAAATG+GGG 0.492287 1:-93977890 MsG0180005613.01.T01:CDS
TCCGTCTCTGAAATCATCTA+GGG 0.497267 1:-93978215 MsG0180005613.01.T01:CDS
AACATACCTACTCAGAGGGT+TGG 0.513836 1:-93976211 MsG0180005613.01.T01:CDS
GACGTACATGTAAAGGCTAC+AGG 0.527407 1:-93977160 MsG0180005613.01.T01:CDS
TCAACTTTCCCAATTGACTC+AGG 0.527990 1:-93978052 MsG0180005613.01.T01:intron
GCAGGCTCTTGGTGATAGGA+AGG 0.531782 1:-93976749 MsG0180005613.01.T01:CDS
GCTGCTTTGGTGGATGGCAA+TGG 0.538954 1:-93978085 MsG0180005613.01.T01:CDS
CGACATCTTCATTTGTGTGA+TGG 0.542341 1:+93977119 None:intergenic
TTTCAGCAACTTGCTTCACA+TGG 0.550479 1:-93977190 MsG0180005613.01.T01:intron
TGAACTAATGCTTCATCAAG+TGG 0.551680 1:+93976697 None:intergenic
GCCATCCACCAAAGCAGCGG+CGG 0.554726 1:+93978090 None:intergenic
GATTCAGTGAGGTGAGATTG+CGG 0.555231 1:+93978128 None:intergenic
GAGCAGAGAAGTTACCAAAC+CGG 0.559283 1:+93976719 None:intergenic
ACTGTTTGACGTACATGTAA+AGG 0.559891 1:-93977167 MsG0180005613.01.T01:CDS
ACCCTAGATGATTTCAGAGA+CGG 0.560120 1:+93978214 None:intergenic
TCAAGCATATGATCAAGAAA+GGG 0.563364 1:+93977844 None:intergenic
TAGAATTGGAGAGGTGAAAA+GGG 0.571453 1:-93977941 MsG0180005613.01.T01:CDS
GCAGCGGCGGAGATGTTCCT+GGG 0.571795 1:+93978103 None:intergenic
TCAAATATGCAGTTCAAAAG+GGG 0.580346 1:-93974962 MsG0180005613.01.T01:intron
CATACCTACTCAGAGGGTTG+GGG 0.594176 1:-93976209 MsG0180005613.01.T01:CDS
ATTGCCATCCACCAAAGCAG+CGG 0.599331 1:+93978087 None:intergenic
TCACCTCACTGAATCCTCCC+AGG 0.604648 1:-93978120 MsG0180005613.01.T01:CDS
TTCAGGTGCTAGAATTGGAG+AGG 0.615450 1:-93977950 MsG0180005613.01.T01:intron
GGTTGGGGCATACGACACTC+AGG 0.623135 1:-93976194 MsG0180005613.01.T01:CDS
TATGCCCCAACCCTCTGAGT+AGG 0.625898 1:+93976205 None:intergenic
CAGGCTCTTGGTGATAGGAA+GGG 0.631297 1:-93976748 MsG0180005613.01.T01:CDS
CTTAAACATACCTACTCAGA+GGG 0.645466 1:-93976215 MsG0180005613.01.T01:CDS
TGTCGCTCTTGCTATTGGAA+CGG 0.647644 1:-93977101 MsG0180005613.01.T01:intron
AGTCATAACCTAGATGCGGT+CGG 0.664165 1:+93976236 None:intergenic
ACTTAAACATACCTACTCAG+AGG 0.687734 1:-93976216 MsG0180005613.01.T01:CDS
TTTAAGTCATAACCTAGATG+CGG 0.688778 1:+93976232 None:intergenic
AGAGGTGAAAAGGGTCACCA+AGG 0.711904 1:-93977932 MsG0180005613.01.T01:CDS
GCGGCGGAGATGTTCCTGGG+AGG 0.718744 1:+93978106 None:intergenic
GTTCCTGGGAGGATTCAGTG+AGG 0.795914 1:+93978117 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATGTTAAATCTATAAA+TGG - Chr1:93976641-93976660 MsG0180005613.01.T01:intron 10.0%
!! AATATATATTAAAAAAAGCA+TGG + Chr1:93977489-93977508 None:intergenic 10.0%
!! TACTAAAAAAAACAAAAAAT+TGG + Chr1:93977670-93977689 None:intergenic 10.0%
!! AAAAATCGAAAATCTTAAAA+GGG + Chr1:93975210-93975229 None:intergenic 15.0%
!! AAAATAAACTTATATCAAGA+TGG + Chr1:93976886-93976905 None:intergenic 15.0%
!! CAATATTCCTTAATTTATAT+TGG + Chr1:93978123-93978142 None:intergenic 15.0%
!! TGTATCAGTTAAAATTAATT+TGG - Chr1:93975308-93975327 MsG0180005613.01.T01:intron 15.0%
!! TTAAAGTTAAAATTGTTCAA+TGG - Chr1:93975956-93975975 MsG0180005613.01.T01:intron 15.0%
!!! AGTAATTTTTTTTATGAAGA+TGG - Chr1:93977686-93977705 MsG0180005613.01.T01:intron 15.0%
!!! TTACTTTTTTTTATCATTTC+AGG - Chr1:93975243-93975262 MsG0180005613.01.T01:intron 15.0%
!! AAAATCGAAAATCTTAAAAG+GGG + Chr1:93975209-93975228 None:intergenic 20.0%
!! ATCTAAAAATAAATGTTGCA+AGG - Chr1:93975683-93975702 MsG0180005613.01.T01:intron 20.0%
!! ATGTCTGTTTAAATACTTTA+TGG - Chr1:93977045-93977064 MsG0180005613.01.T01:intron 20.0%
!! ATTTAACATATTTGTAAGCA+AGG + Chr1:93976634-93976653 None:intergenic 20.0%
!! CAAAATGCAATTTAACTAAT+TGG - Chr1:93976297-93976316 MsG0180005613.01.T01:intron 20.0%
!! CCAATAAGAATTTAAGAAAA+TGG - Chr1:93975472-93975491 MsG0180005613.01.T01:intron 20.0%
!! GAAAAATCGAAAATCTTAAA+AGG + Chr1:93975211-93975230 None:intergenic 20.0%
!!! AAAATTAATTTGGATGGAAA+TGG - Chr1:93975318-93975337 MsG0180005613.01.T01:intron 20.0%
!!! AAATTAATTTGGATGGAAAT+GGG - Chr1:93975319-93975338 MsG0180005613.01.T01:intron 20.0%
!!! CCATTTTCTTAAATTCTTAT+TGG + Chr1:93975475-93975494 None:intergenic 20.0%
!!! TCAGTTAAAATTAATTTGGA+TGG - Chr1:93975312-93975331 MsG0180005613.01.T01:intron 20.0%
! AAATTCCCATCATATTATTG+AGG - Chr1:93977551-93977570 MsG0180005613.01.T01:intron 25.0%
! AGAATCAGATTGTAATGATA+AGG - Chr1:93975869-93975888 MsG0180005613.01.T01:intron 25.0%
! AGGTTTCTGAATTGAAAATT+AGG - Chr1:93976848-93976867 MsG0180005613.01.T01:intron 25.0%
! AGTACATAAAAATAAGGAAC+GGG + Chr1:93977197-93977216 None:intergenic 25.0%
! CACAAAACAGAAATTATAGT+GGG + Chr1:93976909-93976928 None:intergenic 25.0%
! CAGTACATAAAAATAAGGAA+CGG + Chr1:93977198-93977217 None:intergenic 25.0%
! CTACTTATTAAAGTTGTTTG+TGG - Chr1:93976178-93976197 MsG0180005613.01.T01:CDS 25.0%
! CTCATCAGTACATAAAAATA+AGG + Chr1:93977203-93977222 None:intergenic 25.0%
! GATTATAATCTTATGACTGT+GGG - Chr1:93976336-93976355 MsG0180005613.01.T01:intron 25.0%
! GTCTATAAAAGATTCTATCT+AGG - Chr1:93975821-93975840 MsG0180005613.01.T01:intron 25.0%
! TAGATATTAGATAAAGAGCT+AGG - Chr1:93975773-93975792 MsG0180005613.01.T01:intron 25.0%
! TATAATCATTGTTAGAGTTG+TGG + Chr1:93976323-93976342 None:intergenic 25.0%
! TCCTTAATTTATATTGGTGA+GGG + Chr1:93978117-93978136 None:intergenic 25.0%
! TCTAACTTGAAAACTAGTTA+AGG - Chr1:93975918-93975937 MsG0180005613.01.T01:intron 25.0%
! TGATTATAATCTTATGACTG+TGG - Chr1:93976335-93976354 MsG0180005613.01.T01:intron 25.0%
! TTAACTCAAATCTTTAACAG+AGG + Chr1:93976583-93976602 None:intergenic 25.0%
! TTCCTTAATTTATATTGGTG+AGG + Chr1:93978118-93978137 None:intergenic 25.0%
!! AAATAATTTTTATGCAGCAC+TGG + Chr1:93977743-93977762 None:intergenic 25.0%
!! AATGCTAAATATGTTTTACC+AGG - Chr1:93977403-93977422 MsG0180005613.01.T01:intron 25.0%
!! AATTAATTTGGATGGAAATG+GGG - Chr1:93975320-93975339 MsG0180005613.01.T01:intron 25.0%
!! AATTCCTTGTTTATACTCTA+CGG - Chr1:93977835-93977854 MsG0180005613.01.T01:intron 25.0%
!! GAACAATAACGATTTGTTTA+AGG - Chr1:93978075-93978094 MsG0180005613.01.T01:CDS 25.0%
!!! AACTAGTTTTCAAGTTAGAA+AGG + Chr1:93975917-93975936 None:intergenic 25.0%
!!! GAAACTTTGAAACAATGTAA+TGG - Chr1:93976669-93976688 MsG0180005613.01.T01:intron 25.0%
AAACTTGTAATAAAGTGACG+AGG + Chr1:93977777-93977796 None:intergenic 30.0%
AAGATTGAAGCTTGAAAAAG+TGG + Chr1:93975059-93975078 None:intergenic 30.0%
AAGTAAAACCTGAGTCAATT+GGG + Chr1:93975169-93975188 None:intergenic 30.0%
AATCGTAAGTTAGACAATCA+GGG - Chr1:93978174-93978193 MsG0180005613.01.T01:CDS 30.0%
ACCCTCACCAATATAAATTA+AGG - Chr1:93978113-93978132 MsG0180005613.01.T01:CDS 30.0%
AGACGCAAAATTTATTGATG+TGG + Chr1:93976741-93976760 None:intergenic 30.0%
AGATTGAAGCTTGAAAAAGT+GGG + Chr1:93975058-93975077 None:intergenic 30.0%
ATCAAGCATATGATCAAGAA+AGG + Chr1:93975370-93975389 None:intergenic 30.0%
CGATGAAATAATACACATTC+TGG + Chr1:93975709-93975728 None:intergenic 30.0%
CTCAAATATGCAGTTCAAAA+GGG - Chr1:93978247-93978266 MsG0180005613.01.T01:CDS 30.0%
GCACAAAACAGAAATTATAG+TGG + Chr1:93976910-93976929 None:intergenic 30.0%
GGTAATGATACATAGAATCT+AGG - Chr1:93977309-93977328 MsG0180005613.01.T01:intron 30.0%
TAAAAATAAGGAACGGGAAA+AGG + Chr1:93977191-93977210 None:intergenic 30.0%
TAATCGTAAGTTAGACAATC+AGG - Chr1:93978173-93978192 MsG0180005613.01.T01:CDS 30.0%
TATAGTTGAATACTGAGCAT+GGG - Chr1:93975740-93975759 MsG0180005613.01.T01:intron 30.0%
TCAAATATGCAGTTCAAAAG+GGG - Chr1:93978248-93978267 MsG0180005613.01.T01:CDS 30.0%
TCAAGCATATGATCAAGAAA+GGG + Chr1:93975369-93975388 None:intergenic 30.0%
TCAGAAAGTTCAGTTATCAA+TGG - Chr1:93976760-93976779 MsG0180005613.01.T01:CDS 30.0%
TCAGTTTATGTGAACAAACT+TGG - Chr1:93975989-93976008 MsG0180005613.01.T01:intron 30.0%
TGAGGATATTGCTTAAAGAT+TGG - Chr1:93976230-93976249 MsG0180005613.01.T01:CDS 30.0%
TGCACAGATGAATTCAAAAT+TGG + Chr1:93977517-93977536 None:intergenic 30.0%
TTATAGTTGAATACTGAGCA+TGG - Chr1:93975739-93975758 MsG0180005613.01.T01:intron 30.0%
TTTAAGTCATAACCTAGATG+CGG + Chr1:93976981-93977000 None:intergenic 30.0%
TTTGACTATTGAGCTTCAAA+TGG - Chr1:93977110-93977129 MsG0180005613.01.T01:CDS 30.0%
TTTGTTCACATAAACTGACA+TGG + Chr1:93975987-93976006 None:intergenic 30.0%
! AAATTGCATTTTGCACAGAA+AGG + Chr1:93976290-93976309 None:intergenic 30.0%
! AACTGATACATTAGTTTCCT+TGG + Chr1:93975298-93975317 None:intergenic 30.0%
! AATATGATGGGAATTTGTTC+CGG + Chr1:93977547-93977566 None:intergenic 30.0%
! TAAATTCAAGCCTCAGTTTT+CGG - Chr1:93977460-93977479 MsG0180005613.01.T01:intron 30.0%
ACGCCTTCAATATAAAGTGT+TGG - Chr1:93975570-93975589 MsG0180005613.01.T01:intron 35.0%
ACTGTTTGACGTACATGTAA+AGG - Chr1:93976043-93976062 MsG0180005613.01.T01:intron 35.0%
ACTTAAACATACCTACTCAG+AGG - Chr1:93976994-93977013 MsG0180005613.01.T01:intron 35.0%
AGGAATTGAACATTCATTCC+AGG + Chr1:93977822-93977841 None:intergenic 35.0%
AGGTTGCCTCAATAATATGA+TGG + Chr1:93977560-93977579 None:intergenic 35.0%
ATTTACGTTACTTCATCTCC+AGG - Chr1:93976431-93976450 MsG0180005613.01.T01:intron 35.0%
CAATCCGTAGAGTATAAACA+AGG + Chr1:93977842-93977861 None:intergenic 35.0%
CCTCAAATATGCAGTTCAAA+AGG - Chr1:93978246-93978265 MsG0180005613.01.T01:CDS 35.0%
CGAACATGCTTCATTATCTT+AGG - Chr1:93976206-93976225 MsG0180005613.01.T01:CDS 35.0%
CTTAAACATACCTACTCAGA+GGG - Chr1:93976995-93977014 MsG0180005613.01.T01:intron 35.0%
GAAGTAAAACCTGAGTCAAT+TGG + Chr1:93975170-93975189 None:intergenic 35.0%
GCACCAACACTTTATATTGA+AGG + Chr1:93975576-93975595 None:intergenic 35.0%
GGTTGCCTCAATAATATGAT+GGG + Chr1:93977559-93977578 None:intergenic 35.0%
TAGAATTGGAGAGGTGAAAA+GGG - Chr1:93975269-93975288 MsG0180005613.01.T01:intron 35.0%
TGAACTAATGCTTCATCAAG+TGG + Chr1:93976516-93976535 None:intergenic 35.0%
TGCGTAATAAAAGACATACG+TGG + Chr1:93975633-93975652 None:intergenic 35.0%
TTCAACTCAGTTGTCAATCA+CGG - Chr1:93977948-93977967 MsG0180005613.01.T01:CDS 35.0%
! AACCTTCAAAGCATTTGCTA+GGG - Chr1:93977575-93977594 MsG0180005613.01.T01:intron 35.0%
! ATCATTTCAGGTGCTAGAAT+TGG - Chr1:93975255-93975274 MsG0180005613.01.T01:intron 35.0%
! ATTTGAGTTAACGTGTGTTG+AGG - Chr1:93976592-93976611 MsG0180005613.01.T01:intron 35.0%
! CCTTTTGAACTGCATATTTG+AGG + Chr1:93978249-93978268 None:intergenic 35.0%
! TGCTTCATTATCTTAGGTTG+AGG - Chr1:93976212-93976231 MsG0180005613.01.T01:CDS 35.0%
! TTATGTACTGATGAGTCTTC+TGG - Chr1:93977208-93977227 MsG0180005613.01.T01:intron 35.0%
!! TGCAAAGTGTTGTCAAATAG+TGG + Chr1:93978038-93978057 None:intergenic 35.0%
AAATAAGGAACGGGAAAAGG+TGG + Chr1:93977188-93977207 None:intergenic 40.0%
ACCCTAGATGATTTCAGAGA+CGG + Chr1:93974999-93975018 None:intergenic 40.0%
AGCATTAGTTCACGTTTCTC+TGG - Chr1:93976524-93976543 MsG0180005613.01.T01:intron 40.0%
ATAAAGAGCTAGGTGCACAT+GGG - Chr1:93975783-93975802 MsG0180005613.01.T01:intron 40.0%
ATAAATCCTGGACAAGGTCA+GGG + Chr1:93976950-93976969 None:intergenic 40.0%
CAAGATGATATCTCTGTTCC+TGG - Chr1:93977801-93977820 MsG0180005613.01.T01:intron 40.0%
CATAGAATCTAGGTCAGAGT+CGG - Chr1:93977319-93977338 MsG0180005613.01.T01:intron 40.0%
CATTACCTGTCGAATGTGAA+GGG + Chr1:93977296-93977315 None:intergenic 40.0%
CGAAAATCTTAAAAGGGGCA+GGG + Chr1:93975204-93975223 None:intergenic 40.0%
CGACATCTTCATTTGTGTGA+TGG + Chr1:93976094-93976113 None:intergenic 40.0%
CTAGAATTGGAGAGGTGAAA+AGG - Chr1:93975268-93975287 MsG0180005613.01.T01:intron 40.0%
CTTGAAAAAGTGGGCATGTT+GGG + Chr1:93975049-93975068 None:intergenic 40.0%
CTTGTAATAAAGTGACGAGG+AGG + Chr1:93977774-93977793 None:intergenic 40.0%
GAAAATCTTAAAAGGGGCAG+GGG + Chr1:93975203-93975222 None:intergenic 40.0%
GATGATTTCAGAGACGGAAA+TGG + Chr1:93974993-93975012 None:intergenic 40.0%
GTTTGAGAGATACTAGACCT+TGG + Chr1:93977648-93977667 None:intergenic 40.0%
TAGACCTTGGTATTGTTCCA+CGG + Chr1:93977635-93977654 None:intergenic 40.0%
TATACAGCTCACTTAGCTGT+TGG + Chr1:93976140-93976159 None:intergenic 40.0%
TCATTACCTGTCGAATGTGA+AGG + Chr1:93977297-93977316 None:intergenic 40.0%
TCGAAAATCTTAAAAGGGGC+AGG + Chr1:93975205-93975224 None:intergenic 40.0%
TCTAGCAGTACTTGTTCACA+AGG - Chr1:93976828-93976847 MsG0180005613.01.T01:intron 40.0%
TGGCAGTGCAAAAGTAACAA+AGG + Chr1:93975423-93975442 None:intergenic 40.0%
TTTGAGTGCAACTGAGTTTG+TGG + Chr1:93974963-93974982 None:intergenic 40.0%
! ACATCCTTGTTTGTAGTTGG+TGG - Chr1:93977231-93977250 MsG0180005613.01.T01:intron 40.0%
! AGCTTTAGTGCGATGATAGA+TGG + Chr1:93976408-93976427 None:intergenic 40.0%
! CAACCTTCAAAGCATTTGCT+AGG - Chr1:93977574-93977593 MsG0180005613.01.T01:intron 40.0%
! TCAACTTTCCCAATTGACTC+AGG - Chr1:93975158-93975177 MsG0180005613.01.T01:intron 40.0%
! TGGACATCCTTGTTTGTAGT+TGG - Chr1:93977228-93977247 MsG0180005613.01.T01:intron 40.0%
! TTATATTGAAGGCGTGTTCC+AGG + Chr1:93975565-93975584 None:intergenic 40.0%
! TTCATCTGTGCACAGTTTTC+CGG - Chr1:93977525-93977544 MsG0180005613.01.T01:intron 40.0%
! TTCTCTGGTAATTTGCGTAC+TGG - Chr1:93976539-93976558 MsG0180005613.01.T01:intron 40.0%
! TTTCAGCAACTTGCTTCACA+TGG - Chr1:93976020-93976039 MsG0180005613.01.T01:intron 40.0%
!! AACGAGAAAGCATTGACACA+AGG + Chr1:93976805-93976824 None:intergenic 40.0%
!! GTGATAGGAAGGGTATTAAC+CGG - Chr1:93976472-93976491 MsG0180005613.01.T01:intron 40.0%
!! TCCGTCTCTGAAATCATCTA+GGG - Chr1:93974995-93975014 MsG0180005613.01.T01:intron 40.0%
!! TTCCGTCTCTGAAATCATCT+AGG - Chr1:93974994-93975013 MsG0180005613.01.T01:intron 40.0%
!!! GGAGCATTTTTTCCAGTCAT+TGG - Chr1:93977252-93977271 MsG0180005613.01.T01:intron 40.0%
AAAAAGTGGGCATGTTGGGT+TGG + Chr1:93975045-93975064 None:intergenic 45.0%
AAAAGTGGGCATGTTGGGTT+GGG + Chr1:93975044-93975063 None:intergenic 45.0%
AACATACCTACTCAGAGGGT+TGG - Chr1:93976999-93977018 MsG0180005613.01.T01:intron 45.0%
ACATACCTACTCAGAGGGTT+GGG - Chr1:93977000-93977019 MsG0180005613.01.T01:intron 45.0%
AGCCCTAGCAAATGCTTTGA+AGG + Chr1:93977580-93977599 None:intergenic 45.0%
AGTCATAACCTAGATGCGGT+CGG + Chr1:93976977-93976996 None:intergenic 45.0%
ATTCAGTGAGGTGAGATTGC+GGG + Chr1:93975084-93975103 None:intergenic 45.0%
CAGATGTGTTCACCAATGAC+TGG + Chr1:93977267-93977286 None:intergenic 45.0%
CAGTCATTGGTGAACACATC+TGG - Chr1:93977265-93977284 MsG0180005613.01.T01:intron 45.0%
GACCTTGTCCAGGATTTATC+TGG - Chr1:93976951-93976970 MsG0180005613.01.T01:intron 45.0%
GACGTACATGTAAAGGCTAC+AGG - Chr1:93976050-93976069 MsG0180005613.01.T01:intron 45.0%
GAGCAGAGAAGTTACCAAAC+CGG + Chr1:93976494-93976513 None:intergenic 45.0%
GATAAAGAGCTAGGTGCACA+TGG - Chr1:93975782-93975801 MsG0180005613.01.T01:intron 45.0%
GATAAATCCTGGACAAGGTC+AGG + Chr1:93976951-93976970 None:intergenic 45.0%
GATTCAGTGAGGTGAGATTG+CGG + Chr1:93975085-93975104 None:intergenic 45.0%
GCTTGAAAAAGTGGGCATGT+TGG + Chr1:93975050-93975069 None:intergenic 45.0%
GGGGTTGCTGATAATAGTTC+TGG - Chr1:93975339-93975358 MsG0180005613.01.T01:intron 45.0%
TATGACCCTTCACATTCGAC+AGG - Chr1:93977288-93977307 MsG0180005613.01.T01:intron 45.0%
TGCTCCACCAACTACAAACA+AGG + Chr1:93977238-93977257 None:intergenic 45.0%
TTCAGGTGCTAGAATTGGAG+AGG - Chr1:93975260-93975279 MsG0180005613.01.T01:intron 45.0%
! GAAGATGTCGCTCTTGCTAT+TGG - Chr1:93976104-93976123 MsG0180005613.01.T01:intron 45.0%
!! AGGAAGGGTATTAACCGGTT+TGG - Chr1:93976477-93976496 MsG0180005613.01.T01:intron 45.0%
!! TGTACAAAGAGCATCTAGCC+TGG + Chr1:93977424-93977443 None:intergenic 45.0%
!! TGTCGCTCTTGCTATTGGAA+CGG - Chr1:93976109-93976128 MsG0180005613.01.T01:intron 45.0%
AAGGAACGGGAAAAGGTGGA+AGG + Chr1:93977184-93977203 None:intergenic 50.0%
AGAGGTGAAAAGGGTCACCA+AGG - Chr1:93975278-93975297 MsG0180005613.01.T01:intron 50.0%
AGCATGGTCTCCGAAAACTG+AGG + Chr1:93977473-93977492 None:intergenic 50.0%
ATTGCCATCCACCAAAGCAG+CGG + Chr1:93975126-93975145 None:intergenic 50.0%
CATACCTACTCAGAGGGTTG+GGG - Chr1:93977001-93977020 MsG0180005613.01.T01:intron 50.0%
CTAGGTGCACATGGGATGAA+TGG - Chr1:93975791-93975810 MsG0180005613.01.T01:intron 50.0%
GGCCAGATAAATCCTGGACA+AGG + Chr1:93976956-93976975 None:intergenic 50.0%
! CAGGCTCTTGGTGATAGGAA+GGG - Chr1:93976462-93976481 MsG0180005613.01.T01:intron 50.0%
!! GCACATGTTGGTGTCAGACA+TGG + Chr1:93975543-93975562 None:intergenic 50.0%
AATCCTGGACAAGGTCAGGG+AGG + Chr1:93976947-93976966 None:intergenic 55.0%
GAGTATGATACACGTCGCCG+TGG - Chr1:93977615-93977634 MsG0180005613.01.T01:intron 55.0%
GGTGCACATGGGATGAATGG+TGG - Chr1:93975794-93975813 MsG0180005613.01.T01:intron 55.0%
GTCGCCGTGGAACAATACCA+AGG - Chr1:93977628-93977647 MsG0180005613.01.T01:intron 55.0%
GTCTGACACCAACATGTGCC+TGG - Chr1:93975544-93975563 MsG0180005613.01.T01:intron 55.0%
GTTCCTGGGAGGATTCAGTG+AGG + Chr1:93975096-93975115 None:intergenic 55.0%
GTTGTCAATCACGGATCGCG+CGG - Chr1:93977957-93977976 MsG0180005613.01.T01:intron 55.0%
TATGCCCCAACCCTCTGAGT+AGG + Chr1:93977008-93977027 None:intergenic 55.0%
TCACCTCACTGAATCCTCCC+AGG - Chr1:93975090-93975109 MsG0180005613.01.T01:intron 55.0%
TCATCTCCAGGCTTTGCTGC+AGG - Chr1:93976443-93976462 MsG0180005613.01.T01:intron 55.0%
TCTTAAAAGGGGCAGGGGTG+AGG + Chr1:93975198-93975217 None:intergenic 55.0%
TTATCTGGCCGACCGCATCT+AGG - Chr1:93976966-93976985 MsG0180005613.01.T01:intron 55.0%
TTGCACTGCCACACGTACAC+CGG - Chr1:93975432-93975451 MsG0180005613.01.T01:intron 55.0%
TTTCCTCCCTGACCTTGTCC+AGG - Chr1:93976941-93976960 MsG0180005613.01.T01:intron 55.0%
! GCAGGCTCTTGGTGATAGGA+AGG - Chr1:93976461-93976480 MsG0180005613.01.T01:intron 55.0%
! GCTGCTTTGGTGGATGGCAA+TGG - Chr1:93975125-93975144 MsG0180005613.01.T01:intron 55.0%
! TGCTGCAGGCTCTTGGTGAT+AGG - Chr1:93976457-93976476 MsG0180005613.01.T01:intron 55.0%
CAAGAGCCTGCAGCAAAGCC+TGG + Chr1:93976452-93976471 None:intergenic 60.0%
CAGGCTTTGCTGCAGGCTCT+TGG - Chr1:93976450-93976469 MsG0180005613.01.T01:intron 60.0%
GAACATCTCCGCCGCTGCTT+TGG - Chr1:93975112-93975131 MsG0180005613.01.T01:intron 60.0%
GCGGTCGGCCAGATAAATCC+TGG + Chr1:93976962-93976981 None:intergenic 60.0%
GGCGACTACGTGTCAGTGTC+CGG + Chr1:93975454-93975473 None:intergenic 60.0%
GGCGTGTTCCAGGCACATGT+TGG + Chr1:93975555-93975574 None:intergenic 60.0%
GGTTGGGGCATACGACACTC+AGG - Chr1:93977016-93977035 MsG0180005613.01.T01:intron 60.0%
GTCAGTGTCCGGTGTACGTG+TGG + Chr1:93975443-93975462 None:intergenic 60.0%
AGCAGCGGCGGAGATGTTCC+TGG + Chr1:93975111-93975130 None:intergenic 65.0%
GCAGCGGCGGAGATGTTCCT+GGG + Chr1:93975110-93975129 None:intergenic 65.0%
GCCATCCACCAAAGCAGCGG+CGG + Chr1:93975123-93975142 None:intergenic 65.0%
! CATCTCCGCCGCTGCTTTGG+TGG - Chr1:93975115-93975134 MsG0180005613.01.T01:intron 65.0%
! TCCGCCGCTGCTTTGGTGGA+TGG - Chr1:93975119-93975138 MsG0180005613.01.T01:intron 65.0%
GCGGCGGAGATGTTCCTGGG+AGG + Chr1:93975107-93975126 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 93974945 93978287 93974945 ID=MsG0180005613.01;Name=MsG0180005613.01
Chr1 mRNA 93974945 93978287 93974945 ID=MsG0180005613.01.T01;Parent=MsG0180005613.01;Name=MsG0180005613.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0|0|1|0.8|0.66|6|0|229
Chr1 exon 93978053 93978287 93978053 ID=MsG0180005613.01.T01:exon:50010;Parent=MsG0180005613.01.T01
Chr1 exon 93977843 93977967 93977843 ID=MsG0180005613.01.T01:exon:50009;Parent=MsG0180005613.01.T01
Chr1 exon 93977102 93977206 93977102 ID=MsG0180005613.01.T01:exon:50008;Parent=MsG0180005613.01.T01
Chr1 exon 93976687 93976779 93976687 ID=MsG0180005613.01.T01:exon:50007;Parent=MsG0180005613.01.T01
Chr1 exon 93976166 93976269 93976166 ID=MsG0180005613.01.T01:exon:50006;Parent=MsG0180005613.01.T01
Chr1 exon 93974945 93974972 93974945 ID=MsG0180005613.01.T01:exon:50005;Parent=MsG0180005613.01.T01
Chr1 CDS 93978053 93978287 93978053 ID=MsG0180005613.01.T01:cds;Parent=MsG0180005613.01.T01
Chr1 CDS 93977843 93977967 93977843 ID=MsG0180005613.01.T01:cds;Parent=MsG0180005613.01.T01
Chr1 CDS 93977102 93977206 93977102 ID=MsG0180005613.01.T01:cds;Parent=MsG0180005613.01.T01
Chr1 CDS 93976687 93976779 93976687 ID=MsG0180005613.01.T01:cds;Parent=MsG0180005613.01.T01
Chr1 CDS 93976166 93976269 93976166 ID=MsG0180005613.01.T01:cds;Parent=MsG0180005613.01.T01
Chr1 CDS 93974945 93974972 93974945 ID=MsG0180005613.01.T01:cds;Parent=MsG0180005613.01.T01
Gene Sequence

>MsG0180005613.01.T01

ATGGAGCTGACTTTACCACAAACTCAGTTGCACTCAAAATATCTTCCATTTCCGTCTCTGAAATCATCTAGGGTTTCTGTTTTTCATAGAATTACACCCAACCCAACATGCCCACTTTTTCAAGCTTCAATCTTTTCCCGCAATCTCACCTCACTGAATCCTCCCAGGAACATCTCCGCCGCTGCTTTGGTGGATGGCAATGGCAACAACACTTCAACTTTCCCAATTGACTCAGGTGCTAGAATTGGAGAGGTGAAAAGGGTCACCAAGGAAACTAATGTATCAGTTAAAATTAATTTGGATGGAAATGGGGTTGCTGATAATAGTTCTGGAATTCCCTTTCTTGATCATATGCTTGATCAACTTGCTTCACATGGACTGTTTGACGTACATGTAAAGGCTACAGGTGACACGCATATTGATGACCATCACACAAATGAAGATGTCGCTCTTGCTATTGGAACGGCTTTGCTGCAGGCTCTTGGTGATAGGAAGGGTATTAACCGGTTTGGTAACTTCTCTGCTCCACTTGATGAAGCATTAGTTCACGTTTCTCTGGATTTATCTGGCCGACCGCATCTAGGTTATGACTTAAACATACCTACTCAGAGGGTTGGGGCATACGACACTCAGGTAGTACATGTCTGTTTAAATACTTTATGTTCAAAAGGGGTTCTGTCACGTAGTTAA

Protein sequence

>MsG0180005613.01.T01

MELTLPQTQLHSKYLPFPSLKSSRVSVFHRITPNPTCPLFQASIFSRNLTSLNPPRNISAAALVDGNGNNTSTFPIDSGARIGEVKRVTKETNVSVKINLDGNGVADNSSGIPFLDHMLDQLASHGLFDVHVKATGDTHIDDHHTNEDVALAIGTALLQALGDRKGINRFGNFSAPLDEALVHVSLDLSGRPHLGYDLNIPTQRVGAYDTQVVHVCLNTLCSKGVLSRS*