AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015711.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015711.01.T01 MTR_3g075120 97.222 540 13 1 1 538 1 540 0.0 1068
MsG0380015711.01.T01 MTR_3g094320 49.013 557 239 5 25 537 28 583 0.0 554
MsG0380015711.01.T01 MTR_7g072600 53.571 56 26 0 182 237 18 73 7.58e-14 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015711.01.T01 AT5G50300 67.562 521 163 2 13 528 7 526 0.0 720
MsG0380015711.01.T01 AT5G50300 67.562 521 163 2 13 528 24 543 0.0 720
MsG0380015711.01.T01 AT3G10960 49.911 561 237 5 19 535 19 579 0.0 568

Find 137 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAAGCAAGCCCCAGTTTC+TGG 0.095177 3:-74053052 None:intergenic
AACCAAGGTGTTGGGCTTAT+TGG 0.202923 3:+74052980 MsG0380015711.01.T01:CDS
GTTTGTAACGGCGTTGTTTA+TGG 0.215211 3:-74052408 None:intergenic
CATGCAAGCCTAATAGATTT+TGG 0.220227 3:-74052911 None:intergenic
GTTAAAGGTAGTATGATTTA+TGG 0.226860 3:+74053151 MsG0380015711.01.T01:CDS
TGGGCCTGATCCGGCTAATT+TGG 0.234839 3:+74053000 MsG0380015711.01.T01:CDS
CTTGCATGTGCTGCTGGTAT+TGG 0.252498 3:+74052926 MsG0380015711.01.T01:CDS
AACTTCAATGGCTATTGTTT+TGG 0.253159 3:+74052823 MsG0380015711.01.T01:CDS
AAGTTCTGGCTTGGAGCTTT+TGG 0.263465 3:+74053094 MsG0380015711.01.T01:CDS
ACCAAGGTGTTGGGCTTATT+GGG 0.273447 3:+74052981 MsG0380015711.01.T01:CDS
CCCAGAAACTGGGGCTTGCT+TGG 0.280194 3:+74053051 MsG0380015711.01.T01:CDS
TTGCATGTGCTGCTGGTATT+GGG 0.306219 3:+74052927 MsG0380015711.01.T01:CDS
CCATCACCAAGTGGTGTATC+AGG 0.320339 3:-74053229 None:intergenic
AAAAGTATCGACCCAGAAAC+TGG 0.321079 3:+74053040 MsG0380015711.01.T01:CDS
AGTTGCAAAGCCCAAAGTTC+TGG 0.334679 3:+74053080 MsG0380015711.01.T01:CDS
AAGCTCCAAGCCAGAACTTT+GGG 0.337032 3:-74053090 None:intergenic
ACTATTGTAGGGTCAGCTTT+AGG 0.337994 3:+74053490 MsG0380015711.01.T01:CDS
ATGCTGCAAGCATCATAAAT+TGG 0.340022 3:+74053842 MsG0380015711.01.T01:CDS
TTTAACCTTGTTGGTTATCA+TGG 0.341914 3:+74052779 MsG0380015711.01.T01:CDS
TTAGGTCTTGCTCCAGGTAT+GGG 0.343050 3:+74052737 MsG0380015711.01.T01:CDS
GGTGAGTTTGTGGATGAAAA+AGG 0.348399 3:+74053421 MsG0380015711.01.T01:CDS
AAACTTTGAAGGTGAATATA+TGG 0.351162 3:+74053444 MsG0380015711.01.T01:CDS
GGTTTAATGAAGAATGTTAA+AGG 0.354466 3:+74053136 MsG0380015711.01.T01:CDS
TTTAGGTCTTGCTCCAGGTA+TGG 0.357659 3:+74052736 MsG0380015711.01.T01:CDS
AGCTTATACCAAAATCTATT+AGG 0.366341 3:+74052903 MsG0380015711.01.T01:CDS
GTCCTTCACTAGTGATGGTT+GGG 0.368109 3:+74053662 MsG0380015711.01.T01:CDS
ATGAGAGAGGGTGGTAGGAC+AGG 0.368223 3:+74053553 MsG0380015711.01.T01:CDS
TCTTTGTGACATTTGTGTCT+TGG 0.380620 3:+74053179 MsG0380015711.01.T01:CDS
CCAAGCAAGCCCCAGTTTCT+GGG 0.387318 3:-74053051 None:intergenic
GGATTAACGGCTGTGATCAT+TGG 0.387358 3:+74053574 MsG0380015711.01.T01:CDS
ATAGCAAATGGTATTGTTGC+TGG 0.390897 3:+74053784 MsG0380015711.01.T01:CDS
TACAACAACTGCAACATTTG+TGG 0.398363 3:+74053516 MsG0380015711.01.T01:CDS
TTTGCTATGGAATAAGTTAG+AGG 0.398585 3:-74053769 None:intergenic
GATGCAGCTGGTACTATTGT+AGG 0.399262 3:+74053478 MsG0380015711.01.T01:CDS
CCAGAAACTGGGGCTTGCTT+GGG 0.399883 3:+74053052 MsG0380015711.01.T01:CDS
TGTTGTCAAGTGTTCCTCCA+TGG 0.400237 3:+74053632 MsG0380015711.01.T01:CDS
AATGGTATTGTTGCTGGTAT+TGG 0.400571 3:+74053790 MsG0380015711.01.T01:CDS
GGCTGAGATTGGTGAGTTTG+TGG 0.411324 3:+74053411 MsG0380015711.01.T01:CDS
AAAGCTCCAAGCCAGAACTT+TGG 0.419444 3:-74053091 None:intergenic
GCAAGCATCATAAATTGGTT+GGG 0.419855 3:+74053847 MsG0380015711.01.T01:CDS
AGGTTCCGCCTGAGGCGGTT+AGG 0.420090 3:-74052550 None:intergenic
ATGGTTTCTTCTGTTGCAAT+GGG 0.423017 3:+74052695 MsG0380015711.01.T01:CDS
GTTGTCAAGTGTTCCTCCAT+GGG 0.424101 3:+74053633 MsG0380015711.01.T01:CDS
TTCAAGTTAACCAAGGTGTT+GGG 0.433354 3:+74052972 MsG0380015711.01.T01:CDS
CAAGCTTCATATCCAGCATT+AGG 0.435994 3:-74052623 None:intergenic
GAGGAACACTTGACAACAAA+GGG 0.436205 3:-74053627 None:intergenic
CAACACCTTGGTTAACTTGA+AGG 0.438439 3:-74052970 None:intergenic
GGTTAGGATGGTTGCGTTGA+CGG 0.441711 3:-74052534 None:intergenic
CAAAGCCCAAAGTTCTGGCT+TGG 0.453258 3:+74053085 MsG0380015711.01.T01:CDS
ATTAGGCTTGCATGTGCTGC+TGG 0.458483 3:+74052920 MsG0380015711.01.T01:CDS
GACTGGTATAATGTATACTA+TGG 0.460238 3:+74053390 MsG0380015711.01.T01:CDS
TAAGCATTGGGCCCCATACC+TGG 0.463025 3:-74052749 None:intergenic
TATGGTTTCTTCTGTTGCAA+TGG 0.464732 3:+74052694 MsG0380015711.01.T01:CDS
TCTTTGTTGTAACTTGAAGT+AGG 0.472333 3:-74052444 None:intergenic
GTAACCAAATTAGCCGGATC+AGG 0.472560 3:-74053004 None:intergenic
TGCAACTTCTGTAACTGCTA+TGG 0.474498 3:+74052676 MsG0380015711.01.T01:CDS
GGGTGGTAGGACAGGATTAA+CGG 0.474590 3:+74053561 MsG0380015711.01.T01:CDS
AAGGGAAGTTTGGGAGGCAT+TGG 0.475987 3:+74053336 MsG0380015711.01.T01:CDS
GTTAAAAGCTAAATAAGCAT+TGG 0.476658 3:-74052762 None:intergenic
GTGTCGGCCACTGCAACAAC+AGG 0.478730 3:+74053907 MsG0380015711.01.T01:CDS
TTAAAAGCTAAATAAGCATT+GGG 0.480173 3:-74052761 None:intergenic
CTAACTTATTCCATAGCAAA+TGG 0.481739 3:+74053772 MsG0380015711.01.T01:CDS
AATCTCATATCAAACTTCAA+TGG 0.485501 3:+74052811 MsG0380015711.01.T01:CDS
CTGATACACCACTTGGTGAT+GGG 0.491740 3:+74053230 MsG0380015711.01.T01:CDS
CTTCAAGTTAACCAAGGTGT+TGG 0.492330 3:+74052971 MsG0380015711.01.T01:CDS
TGCAAGCATCATAAATTGGT+TGG 0.492995 3:+74053846 MsG0380015711.01.T01:CDS
CCTGATACACCACTTGGTGA+TGG 0.494415 3:+74053229 MsG0380015711.01.T01:CDS
GCAACCATCCTAACCGCCTC+AGG 0.494872 3:+74052542 MsG0380015711.01.T01:CDS
ACATTTGTGGAATCATCAGC+TGG 0.495434 3:+74053529 MsG0380015711.01.T01:CDS
CTTCCTTTAGGTCTTGCTCC+AGG 0.495831 3:+74052731 MsG0380015711.01.T01:CDS
GGCTAATTTGGTTACGATGA+CGG 0.502335 3:+74053012 MsG0380015711.01.T01:CDS
GGTCCTTCACTAGTGATGGT+TGG 0.503897 3:+74053661 MsG0380015711.01.T01:CDS
CGAACAGTCTGCAACGGAGC+AGG 0.504315 3:-74052570 None:intergenic
TGGGCTTATTGGGCCTGATC+CGG 0.513185 3:+74052991 MsG0380015711.01.T01:CDS
AGTGTTCCTCCATGGGCTAT+AGG 0.514609 3:+74053640 MsG0380015711.01.T01:CDS
GCCGTTACAAACAGCTTCAT+AGG 0.518154 3:+74052419 MsG0380015711.01.T01:CDS
GAAACTGGGGCTTGCTTGGG+TGG 0.519213 3:+74053055 MsG0380015711.01.T01:CDS
CTTGTTGGTTATCATGGAAG+TGG 0.521160 3:+74052785 MsG0380015711.01.T01:CDS
TCCGCCTGAGGCGGTTAGGA+TGG 0.522218 3:-74052546 None:intergenic
TAAATTGGTTGGGGAAAATG+AGG 0.522940 3:+74053857 MsG0380015711.01.T01:CDS
TAAGATTGAATCAACTGCAT+GGG 0.524569 3:+74053288 MsG0380015711.01.T01:CDS
TATAGGTCCTTCACTAGTGA+TGG 0.527969 3:+74053657 MsG0380015711.01.T01:CDS
TTAGGCTTCAGTGTGCAATC+TGG 0.529240 3:-74052605 None:intergenic
ATACCTGGAGCAAGACCTAA+AGG 0.530459 3:-74052734 None:intergenic
AATATAGAAGTATGGGAGGA+GGG 0.534212 3:+74052330 None:intergenic
TGCACACTGAAGCCTAATGC+TGG 0.535912 3:+74052611 MsG0380015711.01.T01:CDS
AGCAACAATACCATTTGCTA+TGG 0.536834 3:-74053782 None:intergenic
AAAATCATTATAGCAAAAGC+AGG 0.540709 3:-74053742 None:intergenic
TAATATAGAAGTATGGGAGG+AGG 0.545354 3:+74052329 None:intergenic
TAGGTCTTGCTCCAGGTATG+GGG 0.545422 3:+74052738 MsG0380015711.01.T01:CDS
TAATAAAAGGGAAGTTTGGG+AGG 0.550227 3:+74053330 MsG0380015711.01.T01:CDS
GCATATATTGTTGATGCAGC+TGG 0.552779 3:+74053466 MsG0380015711.01.T01:CDS
GGTTGGGGAAAATGAGGAGA+AGG 0.555614 3:+74053863 MsG0380015711.01.T01:CDS
GTTGATGTAATTGCTATGAC+TGG 0.557035 3:+74053373 MsG0380015711.01.T01:CDS
GTAAGCCATGGTTAGAAAAG+TGG 0.557631 3:-74052504 None:intergenic
AACAACAGGTGTTGACTCAA+TGG 0.559073 3:+74053921 MsG0380015711.01.T01:CDS
AAAGTATCGACCCAGAAACT+GGG 0.559581 3:+74053041 MsG0380015711.01.T01:CDS
CAAGCATCATAAATTGGTTG+GGG 0.560273 3:+74053848 MsG0380015711.01.T01:CDS
CTGGGATGAGAGAGGGTGGT+AGG 0.562053 3:+74053548 MsG0380015711.01.T01:CDS
AAGTTGTGAAGGATATTGAT+TGG 0.562846 3:+74053698 MsG0380015711.01.T01:CDS
ATGCAGCTGGTACTATTGTA+GGG 0.565450 3:+74053479 MsG0380015711.01.T01:CDS
TTGTTGCAGTGGCCGACACT+TGG 0.566804 3:-74053903 None:intergenic
GACGGTTATGATGTAAGCCA+TGG 0.571881 3:-74052516 None:intergenic
AACGGAGCAGGTTCCGCCTG+AGG 0.575449 3:-74052558 None:intergenic
ATAAGATTGAATCAACTGCA+TGG 0.577206 3:+74053287 MsG0380015711.01.T01:CDS
ATGTATACTATGGCTGAGAT+TGG 0.581796 3:+74053400 MsG0380015711.01.T01:CDS
TCCTATGAAGCTGTTTGTAA+CGG 0.584350 3:-74052420 None:intergenic
GCCCAATAAGCCCAACACCT+TGG 0.585757 3:-74052982 None:intergenic
ACCCCAACCATCACTAGTGA+AGG 0.592025 3:-74053664 None:intergenic
AATGAGGAGAAGGATGATCA+AGG 0.597156 3:+74053873 MsG0380015711.01.T01:CDS
TCCTTCACTAGTGATGGTTG+GGG 0.600145 3:+74053663 MsG0380015711.01.T01:CDS
GTCATCGTAACCAAATTAGC+CGG 0.603620 3:-74053010 None:intergenic
GGAGCAGGTTCCGCCTGAGG+CGG 0.604747 3:-74052555 None:intergenic
AATGATGATGAAAGTTGTGA+AGG 0.608328 3:+74053687 MsG0380015711.01.T01:CDS
ACCATCCTAACCGCCTCAGG+CGG 0.612666 3:+74052545 MsG0380015711.01.T01:CDS
GGTTAGAAAAGTGGCAGTTG+CGG 0.614796 3:-74052495 None:intergenic
ATCATCAGCTGGGATGAGAG+AGG 0.620208 3:+74053540 MsG0380015711.01.T01:CDS
TCATCAGCTGGGATGAGAGA+GGG 0.625775 3:+74053541 MsG0380015711.01.T01:CDS
AGTGAAGGACCTATAGCCCA+TGG 0.627407 3:-74053649 None:intergenic
GTGCAATCTGGTGTTGCAGT+AGG 0.631629 3:-74052593 None:intergenic
GTCAACACCTGTTGTTGCAG+TGG 0.633263 3:-74053914 None:intergenic
ATGGGAGGAGGGAAAGCATG+TGG 0.635626 3:+74052341 MsG0380015711.01.T01:CDS
GGAGGAACACTTGACAACAA+AGG 0.635885 3:-74053628 None:intergenic
GTGGGCCTTCAAGTTAACCA+AGG 0.637659 3:+74052965 MsG0380015711.01.T01:CDS
CACTTCCATGATAACCAACA+AGG 0.638963 3:-74052784 None:intergenic
CTGGAGCAAGACCTAAAGGA+AGG 0.643586 3:-74052730 None:intergenic
CTAAAATTCCCATCACCAAG+TGG 0.643825 3:-74053238 None:intergenic
CAAGGAGCATAACCAAGTGT+CGG 0.645951 3:+74053891 MsG0380015711.01.T01:CDS
CATTTGTGGAATCATCAGCT+GGG 0.649553 3:+74053530 MsG0380015711.01.T01:CDS
AACAGGTGTTGACTCAATGG+TGG 0.650221 3:+74053924 MsG0380015711.01.T01:CDS
AATTAATATAGAAGTATGGG+AGG 0.654250 3:+74052326 None:intergenic
AGTAGGCGAACAGTCTGCAA+CGG 0.671171 3:-74052576 None:intergenic
AAGTATCGACCCAGAAACTG+GGG 0.678648 3:+74053042 MsG0380015711.01.T01:CDS
TCAGCTGGGATGAGAGAGGG+TGG 0.679695 3:+74053544 MsG0380015711.01.T01:CDS
GTCTTGGTTTAGACACACTG+AGG 0.729855 3:+74053195 MsG0380015711.01.T01:CDS
GAAGGACCTATAGCCCATGG+AGG 0.763046 3:-74053646 None:intergenic
AGGAACACTTGACAACAAAG+GGG 0.764521 3:-74053626 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAGCTAAATAAGCATT+GGG - Chr3:74052764-74052783 None:intergenic 20.0%
!!! ACTTTGGTGATTTTAATAAA+AGG + Chr3:74053317-74053336 MsG0380015711.01.T01:CDS 20.0%
!!! ATTTTAATAAAAGGGAAGTT+TGG + Chr3:74053326-74053345 MsG0380015711.01.T01:CDS 20.0%
!!! CTTTGGTGATTTTAATAAAA+GGG + Chr3:74053318-74053337 MsG0380015711.01.T01:CDS 20.0%
!!! TTTTAATAAAAGGGAAGTTT+GGG + Chr3:74053327-74053346 MsG0380015711.01.T01:CDS 20.0%
! AAAATCATTATAGCAAAAGC+AGG - Chr3:74053745-74053764 None:intergenic 25.0%
! AATCTCATATCAAACTTCAA+TGG + Chr3:74052811-74052830 MsG0380015711.01.T01:CDS 25.0%
! AGCTTATACCAAAATCTATT+AGG + Chr3:74052903-74052922 MsG0380015711.01.T01:CDS 25.0%
! GGTTTAATGAAGAATGTTAA+AGG + Chr3:74053136-74053155 MsG0380015711.01.T01:CDS 25.0%
! GTTAAAAGCTAAATAAGCAT+TGG - Chr3:74052765-74052784 None:intergenic 25.0%
! GTTAAAGGTAGTATGATTTA+TGG + Chr3:74053151-74053170 MsG0380015711.01.T01:CDS 25.0%
!! AAACTTTGAAGGTGAATATA+TGG + Chr3:74053444-74053463 MsG0380015711.01.T01:CDS 25.0%
!!! TATTTAGCTTTTAACCTTGT+TGG + Chr3:74052770-74052789 MsG0380015711.01.T01:CDS 25.0%
AAAAAACACATGGACTCAAA+TGG + Chr3:74052379-74052398 MsG0380015711.01.T01:CDS 30.0%
AAGTTGTGAAGGATATTGAT+TGG + Chr3:74053698-74053717 MsG0380015711.01.T01:CDS 30.0%
AGCCAAAACAAAAAATGACT+TGG + Chr3:74052649-74052668 MsG0380015711.01.T01:CDS 30.0%
ATAAGATTGAATCAACTGCA+TGG + Chr3:74053287-74053306 MsG0380015711.01.T01:CDS 30.0%
CTAACTTATTCCATAGCAAA+TGG + Chr3:74053772-74053791 MsG0380015711.01.T01:CDS 30.0%
GACTGGTATAATGTATACTA+TGG + Chr3:74053390-74053409 MsG0380015711.01.T01:CDS 30.0%
GATGAAAAAGGAAACTTTGA+AGG + Chr3:74053433-74053452 MsG0380015711.01.T01:CDS 30.0%
TAAGATTGAATCAACTGCAT+GGG + Chr3:74053288-74053307 MsG0380015711.01.T01:CDS 30.0%
TTTCAAGGCTAAAAAACACA+TGG + Chr3:74052369-74052388 MsG0380015711.01.T01:CDS 30.0%
! AACTTCAATGGCTATTGTTT+TGG + Chr3:74052823-74052842 MsG0380015711.01.T01:CDS 30.0%
! AATGATGATGAAAGTTGTGA+AGG + Chr3:74053687-74053706 MsG0380015711.01.T01:CDS 30.0%
! CAAAACAAAAAATGACTTGG+TGG + Chr3:74052652-74052671 MsG0380015711.01.T01:CDS 30.0%
! TCTTTGTTGTAACTTGAAGT+AGG - Chr3:74052447-74052466 None:intergenic 30.0%
! TTTAACCTTGTTGGTTATCA+TGG + Chr3:74052779-74052798 MsG0380015711.01.T01:CDS 30.0%
! TTTGCTATGGAATAAGTTAG+AGG - Chr3:74053772-74053791 None:intergenic 30.0%
!!! CACCAAGTCATTTTTTGTTT+TGG - Chr3:74052654-74052673 None:intergenic 30.0%
!!! TTTCTTTTAGCTTCTGCTTT+TGG + Chr3:74052860-74052879 MsG0380015711.01.T01:CDS 30.0%
!!! TTTTTAGCTAACCTTCCTTT+AGG + Chr3:74052719-74052738 MsG0380015711.01.T01:CDS 30.0%
AATGGTATTGTTGCTGGTAT+TGG + Chr3:74053790-74053809 MsG0380015711.01.T01:CDS 35.0%
ATAGCAAATGGTATTGTTGC+TGG + Chr3:74053784-74053803 MsG0380015711.01.T01:CDS 35.0%
ATGCTGCAAGCATCATAAAT+TGG + Chr3:74053842-74053861 MsG0380015711.01.T01:CDS 35.0%
ATGGTTTCTTCTGTTGCAAT+GGG + Chr3:74052695-74052714 MsG0380015711.01.T01:CDS 35.0%
ATGTATACTATGGCTGAGAT+TGG + Chr3:74053400-74053419 MsG0380015711.01.T01:CDS 35.0%
CAAGCATCATAAATTGGTTG+GGG + Chr3:74053848-74053867 MsG0380015711.01.T01:CDS 35.0%
GCAAGCATCATAAATTGGTT+GGG + Chr3:74053847-74053866 MsG0380015711.01.T01:CDS 35.0%
GTTGATGTAATTGCTATGAC+TGG + Chr3:74053373-74053392 MsG0380015711.01.T01:CDS 35.0%
TAAATTGGTTGGGGAAAATG+AGG + Chr3:74053857-74053876 MsG0380015711.01.T01:CDS 35.0%
TAATAAAAGGGAAGTTTGGG+AGG + Chr3:74053330-74053349 MsG0380015711.01.T01:CDS 35.0%
TACAACAACTGCAACATTTG+TGG + Chr3:74053516-74053535 MsG0380015711.01.T01:CDS 35.0%
TATGGTTTCTTCTGTTGCAA+TGG + Chr3:74052694-74052713 MsG0380015711.01.T01:CDS 35.0%
TCCTATGAAGCTGTTTGTAA+CGG - Chr3:74052423-74052442 None:intergenic 35.0%
TCTTTGTGACATTTGTGTCT+TGG + Chr3:74053179-74053198 MsG0380015711.01.T01:CDS 35.0%
TGCAAGCATCATAAATTGGT+TGG + Chr3:74053846-74053865 MsG0380015711.01.T01:CDS 35.0%
! AAGCATGTGGTGTATTTTCA+AGG + Chr3:74052354-74052373 MsG0380015711.01.T01:CDS 35.0%
! AGCAACAATACCATTTGCTA+TGG - Chr3:74053785-74053804 None:intergenic 35.0%
! CATGCAAGCCTAATAGATTT+TGG - Chr3:74052914-74052933 None:intergenic 35.0%
! GGTTTTCTTATCACAAGCTA+CGG + Chr3:74053115-74053134 MsG0380015711.01.T01:CDS 35.0%
! TATTTTCCTGATACACCACT+TGG + Chr3:74053223-74053242 MsG0380015711.01.T01:CDS 35.0%
! TTCAAGTTAACCAAGGTGTT+GGG + Chr3:74052972-74052991 MsG0380015711.01.T01:CDS 35.0%
!! GGGCTTTTTATTGCTTTTGT+GGG + Chr3:74052947-74052966 MsG0380015711.01.T01:CDS 35.0%
!! TGGGCTTTTTATTGCTTTTG+TGG + Chr3:74052946-74052965 MsG0380015711.01.T01:CDS 35.0%
!!! ACTGCATGGGTTTTTAACTT+TGG + Chr3:74053301-74053320 MsG0380015711.01.T01:CDS 35.0%
!!! ATGGCTATTGTTTTGGTTGA+AGG + Chr3:74052830-74052849 MsG0380015711.01.T01:CDS 35.0%
AATGAGGAGAAGGATGATCA+AGG + Chr3:74053873-74053892 MsG0380015711.01.T01:CDS 40.0%
ACATTTGTGGAATCATCAGC+TGG + Chr3:74053529-74053548 MsG0380015711.01.T01:CDS 40.0%
ACTATTGTAGGGTCAGCTTT+AGG + Chr3:74053490-74053509 MsG0380015711.01.T01:CDS 40.0%
AGGAACACTTGACAACAAAG+GGG - Chr3:74053629-74053648 None:intergenic 40.0%
ATGCAGCTGGTACTATTGTA+GGG + Chr3:74053479-74053498 MsG0380015711.01.T01:CDS 40.0%
CAAGCTTCATATCCAGCATT+AGG - Chr3:74052626-74052645 None:intergenic 40.0%
CACTTCCATGATAACCAACA+AGG - Chr3:74052787-74052806 None:intergenic 40.0%
CATTTGTGGAATCATCAGCT+GGG + Chr3:74053530-74053549 MsG0380015711.01.T01:CDS 40.0%
CTAAAATTCCCATCACCAAG+TGG - Chr3:74053241-74053260 None:intergenic 40.0%
GAGGAACACTTGACAACAAA+GGG - Chr3:74053630-74053649 None:intergenic 40.0%
GCATATATTGTTGATGCAGC+TGG + Chr3:74053466-74053485 MsG0380015711.01.T01:CDS 40.0%
GGCTAATTTGGTTACGATGA+CGG + Chr3:74053012-74053031 MsG0380015711.01.T01:CDS 40.0%
GGTGAGTTTGTGGATGAAAA+AGG + Chr3:74053421-74053440 MsG0380015711.01.T01:CDS 40.0%
GTAAGCCATGGTTAGAAAAG+TGG - Chr3:74052507-74052526 None:intergenic 40.0%
GTCATCGTAACCAAATTAGC+CGG - Chr3:74053013-74053032 None:intergenic 40.0%
GTTTGTAACGGCGTTGTTTA+TGG - Chr3:74052411-74052430 None:intergenic 40.0%
TATAGGTCCTTCACTAGTGA+TGG + Chr3:74053657-74053676 MsG0380015711.01.T01:CDS 40.0%
TGCAACTTCTGTAACTGCTA+TGG + Chr3:74052676-74052695 MsG0380015711.01.T01:CDS 40.0%
! CAACACCTTGGTTAACTTGA+AGG - Chr3:74052973-74052992 None:intergenic 40.0%
! CTTCAAGTTAACCAAGGTGT+TGG + Chr3:74052971-74052990 MsG0380015711.01.T01:CDS 40.0%
! CTTGTTGGTTATCATGGAAG+TGG + Chr3:74052785-74052804 MsG0380015711.01.T01:CDS 40.0%
! TTCTGGGTCGATACTTTTAC+AGG - Chr3:74053038-74053057 None:intergenic 40.0%
!! AAAAGTATCGACCCAGAAAC+TGG + Chr3:74053040-74053059 MsG0380015711.01.T01:CDS 40.0%
!! AAAGTATCGACCCAGAAACT+GGG + Chr3:74053041-74053060 MsG0380015711.01.T01:CDS 40.0%
!! AACAACAGGTGTTGACTCAA+TGG + Chr3:74053921-74053940 MsG0380015711.01.T01:CDS 40.0%
!!! AACTGCCACTTTTCTAACCA+TGG + Chr3:74052499-74052518 MsG0380015711.01.T01:CDS 40.0%
!!! GCTTCTGCTTTTGGTTTAAG+AGG + Chr3:74052869-74052888 MsG0380015711.01.T01:CDS 40.0%
AAAGCTCCAAGCCAGAACTT+TGG - Chr3:74053094-74053113 None:intergenic 45.0%
AAGCTCCAAGCCAGAACTTT+GGG - Chr3:74053093-74053112 None:intergenic 45.0%
AGTTGCAAAGCCCAAAGTTC+TGG + Chr3:74053080-74053099 MsG0380015711.01.T01:CDS 45.0%
ATACCTGGAGCAAGACCTAA+AGG - Chr3:74052737-74052756 None:intergenic 45.0%
GACGGTTATGATGTAAGCCA+TGG - Chr3:74052519-74052538 None:intergenic 45.0%
GATGCAGCTGGTACTATTGT+AGG + Chr3:74053478-74053497 MsG0380015711.01.T01:CDS 45.0%
GCCGTTACAAACAGCTTCAT+AGG + Chr3:74052419-74052438 MsG0380015711.01.T01:CDS 45.0%
GGAGGAACACTTGACAACAA+AGG - Chr3:74053631-74053650 None:intergenic 45.0%
GGATTAACGGCTGTGATCAT+TGG + Chr3:74053574-74053593 MsG0380015711.01.T01:CDS 45.0%
GGTTAGAAAAGTGGCAGTTG+CGG - Chr3:74052498-74052517 None:intergenic 45.0%
GTAACCAAATTAGCCGGATC+AGG - Chr3:74053007-74053026 None:intergenic 45.0%
GTCCTTCACTAGTGATGGTT+GGG + Chr3:74053662-74053681 MsG0380015711.01.T01:CDS 45.0%
GTCTTGGTTTAGACACACTG+AGG + Chr3:74053195-74053214 MsG0380015711.01.T01:CDS 45.0%
GTTGTCAAGTGTTCCTCCAT+GGG + Chr3:74053633-74053652 MsG0380015711.01.T01:CDS 45.0%
TCCTTCACTAGTGATGGTTG+GGG + Chr3:74053663-74053682 MsG0380015711.01.T01:CDS 45.0%
TGTTGTCAAGTGTTCCTCCA+TGG + Chr3:74053632-74053651 MsG0380015711.01.T01:CDS 45.0%
TTAGGCTTCAGTGTGCAATC+TGG - Chr3:74052608-74052627 None:intergenic 45.0%
TTAGGTCTTGCTCCAGGTAT+GGG + Chr3:74052737-74052756 MsG0380015711.01.T01:CDS 45.0%
TTTAGGTCTTGCTCCAGGTA+TGG + Chr3:74052736-74052755 MsG0380015711.01.T01:CDS 45.0%
! CAAGGAGCATAACCAAGTGT+CGG + Chr3:74053891-74053910 MsG0380015711.01.T01:CDS 45.0%
! CTGATACACCACTTGGTGAT+GGG + Chr3:74053230-74053249 MsG0380015711.01.T01:CDS 45.0%
! TTGCATGTGCTGCTGGTATT+GGG + Chr3:74052927-74052946 MsG0380015711.01.T01:CDS 45.0%
!! AACAGGTGTTGACTCAATGG+TGG + Chr3:74053924-74053943 MsG0380015711.01.T01:CDS 45.0%
!! AACCAAGGTGTTGGGCTTAT+TGG + Chr3:74052980-74052999 MsG0380015711.01.T01:CDS 45.0%
!! AAGTATCGACCCAGAAACTG+GGG + Chr3:74053042-74053061 MsG0380015711.01.T01:CDS 45.0%
!! ACCAAGGTGTTGGGCTTATT+GGG + Chr3:74052981-74053000 MsG0380015711.01.T01:CDS 45.0%
!!! AAGTTCTGGCTTGGAGCTTT+TGG + Chr3:74053094-74053113 MsG0380015711.01.T01:CDS 45.0%
ACCCCAACCATCACTAGTGA+AGG - Chr3:74053667-74053686 None:intergenic 50.0%
AGTAGGCGAACAGTCTGCAA+CGG - Chr3:74052579-74052598 None:intergenic 50.0%
AGTGAAGGACCTATAGCCCA+TGG - Chr3:74053652-74053671 None:intergenic 50.0%
ATCATCAGCTGGGATGAGAG+AGG + Chr3:74053540-74053559 MsG0380015711.01.T01:CDS 50.0%
ATTAGGCTTGCATGTGCTGC+TGG + Chr3:74052920-74052939 MsG0380015711.01.T01:CDS 50.0%
CCATCACCAAGTGGTGTATC+AGG - Chr3:74053232-74053251 None:intergenic 50.0%
CTGGAGCAAGACCTAAAGGA+AGG - Chr3:74052733-74052752 None:intergenic 50.0%
CTTCCTTTAGGTCTTGCTCC+AGG + Chr3:74052731-74052750 MsG0380015711.01.T01:CDS 50.0%
GGCTGAGATTGGTGAGTTTG+TGG + Chr3:74053411-74053430 MsG0380015711.01.T01:CDS 50.0%
GGGTGGTAGGACAGGATTAA+CGG + Chr3:74053561-74053580 MsG0380015711.01.T01:CDS 50.0%
GGTCCTTCACTAGTGATGGT+TGG + Chr3:74053661-74053680 MsG0380015711.01.T01:CDS 50.0%
GGTTAGGATGGTTGCGTTGA+CGG - Chr3:74052537-74052556 None:intergenic 50.0%
GGTTGGGGAAAATGAGGAGA+AGG + Chr3:74053863-74053882 MsG0380015711.01.T01:CDS 50.0%
GTCAACACCTGTTGTTGCAG+TGG - Chr3:74053917-74053936 None:intergenic 50.0%
TAGGTCTTGCTCCAGGTATG+GGG + Chr3:74052738-74052757 MsG0380015711.01.T01:CDS 50.0%
TCATCAGCTGGGATGAGAGA+GGG + Chr3:74053541-74053560 MsG0380015711.01.T01:CDS 50.0%
TGCACACTGAAGCCTAATGC+TGG + Chr3:74052611-74052630 MsG0380015711.01.T01:CDS 50.0%
! AAGGGAAGTTTGGGAGGCAT+TGG + Chr3:74053336-74053355 MsG0380015711.01.T01:CDS 50.0%
! AGTGTTCCTCCATGGGCTAT+AGG + Chr3:74053640-74053659 MsG0380015711.01.T01:CDS 50.0%
! CAAAGCCCAAAGTTCTGGCT+TGG + Chr3:74053085-74053104 MsG0380015711.01.T01:CDS 50.0%
! CCTGATACACCACTTGGTGA+TGG + Chr3:74053229-74053248 MsG0380015711.01.T01:CDS 50.0%
! CTTGCATGTGCTGCTGGTAT+TGG + Chr3:74052926-74052945 MsG0380015711.01.T01:CDS 50.0%
! GTGGGCCTTCAAGTTAACCA+AGG + Chr3:74052965-74052984 MsG0380015711.01.T01:CDS 50.0%
!! GTGCAATCTGGTGTTGCAGT+AGG - Chr3:74052596-74052615 None:intergenic 50.0%
ATGAGAGAGGGTGGTAGGAC+AGG + Chr3:74053553-74053572 MsG0380015711.01.T01:CDS 55.0%
CCAAGCAAGCCCCAGTTTCT+GGG - Chr3:74053054-74053073 None:intergenic 55.0%
GAAGGACCTATAGCCCATGG+AGG - Chr3:74053649-74053668 None:intergenic 55.0%
GCCCAATAAGCCCAACACCT+TGG - Chr3:74052985-74053004 None:intergenic 55.0%
TGGGCCTGATCCGGCTAATT+TGG + Chr3:74053000-74053019 MsG0380015711.01.T01:CDS 55.0%
TGGGCTTATTGGGCCTGATC+CGG + Chr3:74052991-74053010 MsG0380015711.01.T01:CDS 55.0%
TTGTTGCAGTGGCCGACACT+TGG - Chr3:74053906-74053925 None:intergenic 55.0%
! ATGGGAGGAGGGAAAGCATG+TGG + Chr3:74052341-74052360 MsG0380015711.01.T01:CDS 55.0%
! CCAGAAACTGGGGCTTGCTT+GGG + Chr3:74053052-74053071 MsG0380015711.01.T01:CDS 55.0%
!! TAAGCATTGGGCCCCATACC+TGG - Chr3:74052752-74052771 None:intergenic 55.0%
ACCATCCTAACCGCCTCAGG+CGG + Chr3:74052545-74052564 MsG0380015711.01.T01:CDS 60.0%
CCCAAGCAAGCCCCAGTTTC+TGG - Chr3:74053055-74053074 None:intergenic 60.0%
CGAACAGTCTGCAACGGAGC+AGG - Chr3:74052573-74052592 None:intergenic 60.0%
CTGGGATGAGAGAGGGTGGT+AGG + Chr3:74053548-74053567 MsG0380015711.01.T01:CDS 60.0%
GCAACCATCCTAACCGCCTC+AGG + Chr3:74052542-74052561 MsG0380015711.01.T01:CDS 60.0%
TCAGCTGGGATGAGAGAGGG+TGG + Chr3:74053544-74053563 MsG0380015711.01.T01:CDS 60.0%
! CCCAGAAACTGGGGCTTGCT+TGG + Chr3:74053051-74053070 MsG0380015711.01.T01:CDS 60.0%
! GAAACTGGGGCTTGCTTGGG+TGG + Chr3:74053055-74053074 MsG0380015711.01.T01:CDS 60.0%
! GTGTCGGCCACTGCAACAAC+AGG + Chr3:74053907-74053926 MsG0380015711.01.T01:CDS 60.0%
AACGGAGCAGGTTCCGCCTG+AGG - Chr3:74052561-74052580 None:intergenic 65.0%
AGGTTCCGCCTGAGGCGGTT+AGG - Chr3:74052553-74052572 None:intergenic 65.0%
TCCGCCTGAGGCGGTTAGGA+TGG - Chr3:74052549-74052568 None:intergenic 65.0%
GGAGCAGGTTCCGCCTGAGG+CGG - Chr3:74052558-74052577 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 74052341 74053957 74052341 ID=MsG0380015711.01;Name=MsG0380015711.01
Chr3 mRNA 74052341 74053957 74052341 ID=MsG0380015711.01.T01;Parent=MsG0380015711.01;Name=MsG0380015711.01.T01;_AED=0.11;_eAED=0.11;_QI=0|-1|0|1|-1|1|1|0|538
Chr3 exon 74052341 74053957 74052341 ID=MsG0380015711.01.T01:exon:874;Parent=MsG0380015711.01.T01
Chr3 CDS 74052341 74053957 74052341 ID=MsG0380015711.01.T01:cds;Parent=MsG0380015711.01.T01
Gene Sequence

>MsG0380015711.01.T01

ATGGGAGGAGGGAAAGCATGTGGTGTATTTTCAAGGCTAAAAAACACATGGACTCAAATGGAAAAATCCATAAACAACGCCGTTACAAACAGCTTCATAGGATCCTACTTCAAGTTACAACAAAGAAAAACATGCTTCACTAAAGAACTACGCGCCGCAACTGCCACTTTTCTAACCATGGCTTACATCATAACCGTCAACGCAACCATCCTAACCGCCTCAGGCGGAACCTGCTCCGTTGCAGACTGTTCGCCTACTGCAACACCAGATTGCACACTGAAGCCTAATGCTGGATATGAAGCTTGTCTAGCCAAAACAAAAAATGACTTGGTGGTTGCAACTTCTGTAACTGCTATGGTTTCTTCTGTTGCAATGGGATTTTTAGCTAACCTTCCTTTAGGTCTTGCTCCAGGTATGGGGCCCAATGCTTATTTAGCTTTTAACCTTGTTGGTTATCATGGAAGTGGCTCAATCTCATATCAAACTTCAATGGCTATTGTTTTGGTTGAAGGTTGTGCTTTTCTTTTAGCTTCTGCTTTTGGTTTAAGAGGTAAGCTTGCTAAGCTTATACCAAAATCTATTAGGCTTGCATGTGCTGCTGGTATTGGGCTTTTTATTGCTTTTGTGGGCCTTCAAGTTAACCAAGGTGTTGGGCTTATTGGGCCTGATCCGGCTAATTTGGTTACGATGACGGCCTGTAAAAGTATCGACCCAGAAACTGGGGCTTGCTTGGGTGGTAAGTTGCAAAGCCCAAAGTTCTGGCTTGGAGCTTTTGGTTTTCTTATCACAAGCTACGGTTTAATGAAGAATGTTAAAGGTAGTATGATTTATGGTATTCTCTTTGTGACATTTGTGTCTTGGTTTAGACACACTGAGGTTACTTATTTTCCTGATACACCACTTGGTGATGGGAATTTTAGTTATTTCAAACAAATTGTTGATTTTCATAAGATTGAATCAACTGCATGGGTTTTTAACTTTGGTGATTTTAATAAAAGGGAAGTTTGGGAGGCATTGGCTACTTTGTTTTATGTTGATGTAATTGCTATGACTGGTATAATGTATACTATGGCTGAGATTGGTGAGTTTGTGGATGAAAAAGGAAACTTTGAAGGTGAATATATGGCATATATTGTTGATGCAGCTGGTACTATTGTAGGGTCAGCTTTAGGTGTTACAACAACTGCAACATTTGTGGAATCATCAGCTGGGATGAGAGAGGGTGGTAGGACAGGATTAACGGCTGTGATCATTGGATTGTATTTCTTTTTGTCATTGTTTTTCACCCCTTTGTTGTCAAGTGTTCCTCCATGGGCTATAGGTCCTTCACTAGTGATGGTTGGGGTAATGATGATGAAAGTTGTGAAGGATATTGATTGGACTAATATAAAAGAAGCAGTTCCTGCTTTTGCTATAATGATTTTAATGCCTCTAACTTATTCCATAGCAAATGGTATTGTTGCTGGTATTGGTCTTTATGTTGCTCTTAGTCTTTTTGACTATGCTGCAAGCATCATAAATTGGTTGGGGAAAATGAGGAGAAGGATGATCAAGGAGCATAACCAAGTGTCGGCCACTGCAACAACAGGTGTTGACTCAATGGTGGAAATCATTTGA

Protein sequence

>MsG0380015711.01.T01

MGGGKACGVFSRLKNTWTQMEKSINNAVTNSFIGSYFKLQQRKTCFTKELRAATATFLTMAYIITVNATILTASGGTCSVADCSPTATPDCTLKPNAGYEACLAKTKNDLVVATSVTAMVSSVAMGFLANLPLGLAPGMGPNAYLAFNLVGYHGSGSISYQTSMAIVLVEGCAFLLASAFGLRGKLAKLIPKSIRLACAAGIGLFIAFVGLQVNQGVGLIGPDPANLVTMTACKSIDPETGACLGGKLQSPKFWLGAFGFLITSYGLMKNVKGSMIYGILFVTFVSWFRHTEVTYFPDTPLGDGNFSYFKQIVDFHKIESTAWVFNFGDFNKREVWEALATLFYVDVIAMTGIMYTMAEIGEFVDEKGNFEGEYMAYIVDAAGTIVGSALGVTTTATFVESSAGMREGGRTGLTAVIIGLYFFLSLFFTPLLSSVPPWAIGPSLVMVGVMMMKVVKDIDWTNIKEAVPAFAIMILMPLTYSIANGIVAGIGLYVALSLFDYAASIINWLGKMRRRMIKEHNQVSATATTGVDSMVEII*