AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039237.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039237.01.T01 MTR_7g068500 84.071 226 36 0 6 231 55 280 5.20e-143 401
MsG0780039237.01.T01 MTR_7g068470 84.513 226 34 1 6 231 25 249 2.65e-141 395
MsG0780039237.01.T01 MTR_7g068460 83.186 226 38 0 6 231 56 281 8.99e-141 395
MsG0780039237.01.T01 MTR_7g068470 83.186 226 33 2 6 231 25 245 5.50e-137 384
MsG0780039237.01.T01 MTR_4g016510 67.431 218 70 1 14 230 38 255 4.47e-109 315
MsG0780039237.01.T01 MTR_7g068530 66.820 217 70 2 14 230 38 252 9.66e-106 305
MsG0780039237.01.T01 MTR_7g068450 61.572 229 84 2 6 230 26 254 9.67e-100 290
MsG0780039237.01.T01 MTR_3g070460 57.798 218 91 1 14 230 38 255 1.25e-95 280
MsG0780039237.01.T01 MTR_7g068550 57.333 225 95 1 6 230 30 253 2.74e-91 269
MsG0780039237.01.T01 MTR_7g068520 47.788 226 21 2 6 231 26 154 2.74e-57 179
MsG0780039237.01.T01 MTR_4g016500 45.622 217 48 4 14 230 280 426 6.52e-52 174
MsG0780039237.01.T01 MTR_2g015500 31.667 180 114 3 14 184 36 215 1.38e-30 113
MsG0780039237.01.T01 MTR_2g015510 32.203 177 113 3 15 184 38 214 2.06e-30 113
MsG0780039237.01.T01 MTR_4g105680 31.000 200 128 3 14 207 62 257 4.52e-29 110
MsG0780039237.01.T01 MTR_2g015480 28.333 180 105 8 14 184 89 253 8.95e-15 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039237.01.T01 AT3G11210 56.422 218 94 1 14 230 38 255 3.06e-95 279
MsG0780039237.01.T01 AT2G38180 58.883 197 72 3 14 208 38 227 2.11e-84 253
MsG0780039237.01.T01 AT5G62930 32.000 200 126 3 14 207 34 229 5.60e-36 127
MsG0780039237.01.T01 AT5G45920 36.158 177 107 3 14 184 35 211 6.28e-36 127
MsG0780039237.01.T01 AT5G45920 36.158 177 107 3 14 184 35 211 6.28e-36 127
MsG0780039237.01.T01 AT5G62930 32.000 200 126 3 14 207 60 255 1.23e-35 127
MsG0780039237.01.T01 AT5G45920 35.948 153 92 3 14 160 35 187 2.93e-29 108
MsG0780039237.01.T01 AT5G45920 35.948 153 92 3 14 160 35 187 2.93e-29 108
MsG0780039237.01.T01 AT5G62930 30.682 176 107 5 45 214 7 173 3.27e-26 100

Find 62 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATAAGGATTCTATGAATT+TGG 0.135830 7:+60390215 None:intergenic
TCTATATCCAATTGCATAAT+AGG 0.148705 7:+60389834 None:intergenic
ATTACATGTTCATTAATAAA+TGG 0.153814 7:-60390006 MsG0780039237.01.T01:three_prime_UTR
AAGTTAATGCCAGCTGAATT+TGG 0.274855 7:-60390341 MsG0780039237.01.T01:CDS
AATGAGCTCAGTGATGAATT+TGG 0.285385 7:-60390692 MsG0780039237.01.T01:intron
AAGGCGTGCTGTGCAAGTTT+TGG 0.302736 7:-60391519 MsG0780039237.01.T01:CDS
TATGATATGGTTTCTCTTGA+TGG 0.317939 7:-60390305 MsG0780039237.01.T01:CDS
AGAAGATTCACCTTATGATA+TGG 0.335446 7:-60390318 MsG0780039237.01.T01:CDS
AATATATTCAGAAGCGTGTT+TGG 0.360952 7:-60390639 MsG0780039237.01.T01:CDS
GGACCACGGCCACTTGGATA+TGG 0.374891 7:+60391205 None:intergenic
GAAGATTGCTACTCATATAA+TGG 0.403964 7:-60391146 MsG0780039237.01.T01:intron
ATACAGTTGCTATGAAGGTT+GGG 0.406406 7:-60391743 None:intergenic
AGTGGGAACCAAGTCTATAT+TGG 0.407643 7:-60390364 MsG0780039237.01.T01:CDS
TGGTCCTCATGTACCATTGC+AGG 0.411614 7:-60391188 MsG0780039237.01.T01:CDS
TTACATGTTCATTAATAAAT+GGG 0.417650 7:-60390005 MsG0780039237.01.T01:three_prime_UTR
TAATAAAATCAATTTACATA+AGG 0.419747 7:+60390200 None:intergenic
CACTCTACATCTTGAGGAAA+AGG 0.437938 7:+60390254 None:intergenic
TGCCATTGAGCAACCATCAT+TGG 0.437939 7:-60391263 MsG0780039237.01.T01:CDS
GTGTCGTGAGATGAAAATAA+AGG 0.443191 7:-60390612 MsG0780039237.01.T01:CDS
ATGAGCTCAGTGATGAATTT+GGG 0.445759 7:-60390691 MsG0780039237.01.T01:intron
CTATATCCAATTGCATAATA+GGG 0.458495 7:+60389835 None:intergenic
AATATCAATGATACAACAAT+TGG 0.462713 7:+60390026 None:intergenic
AATACAGTTGCTATGAAGGT+TGG 0.465220 7:-60391744 None:intergenic
CTTGCATGTTCAATAATACA+TGG 0.469501 7:-60390134 MsG0780039237.01.T01:three_prime_UTR
TTAATTTGTGCCTCGTTGAT+CGG 0.471864 7:+60390816 None:intergenic
TCAAGAGAAACCATATCATA+AGG 0.483799 7:+60390308 None:intergenic
ATGATATGGTTTCTCTTGAT+GGG 0.487292 7:-60390304 MsG0780039237.01.T01:CDS
GGGTGAACATATCTTGATCA+TGG 0.491858 7:-60389985 MsG0780039237.01.T01:three_prime_UTR
GATATGCTGCTTGGAATTCA+AGG 0.495898 7:-60391538 MsG0780039237.01.T01:CDS
CAATTCAGAAAAGAGATGAT+TGG 0.498393 7:-60390571 MsG0780039237.01.T01:CDS
CACCAATGATGGTTGCTCAA+TGG 0.505270 7:+60391261 None:intergenic
CGTCCATATCCAAGTGGCCG+TGG 0.515232 7:-60391208 MsG0780039237.01.T01:CDS
GGGTGAGCAAAACTTGATCA+TGG 0.521263 7:-60390113 MsG0780039237.01.T01:three_prime_UTR
TTGGTGATTGTGTACTTTGG+TGG 0.528440 7:-60391244 MsG0780039237.01.T01:CDS
AAGTACACAATCACCAATGA+TGG 0.528971 7:+60391250 None:intergenic
GAATCTTCTCCAAATTCAGC+TGG 0.530268 7:+60390332 None:intergenic
ACATGAGGACCACGGCCACT+TGG 0.531918 7:+60391199 None:intergenic
AGGAATACATAGAAAATATG+AGG 0.533134 7:-60391168 MsG0780039237.01.T01:CDS
TAATCCGAGTCTTATGTGAC+AGG 0.539331 7:+60390856 None:intergenic
GAATTTGGAATAATATATCA+AGG 0.546411 7:+60390230 None:intergenic
TCATTGGTGATTGTGTACTT+TGG 0.556007 7:-60391247 MsG0780039237.01.T01:CDS
TACAGTTGCTATGAAGGTTG+GGG 0.558888 7:-60391742 None:intergenic
CAAGGCCACTCTACATCTTG+AGG 0.564026 7:+60390248 None:intergenic
AATTGCAGACCACATATCAA+TGG 0.566695 7:+60390589 None:intergenic
ATTAACTTCCAATATAGACT+TGG 0.567442 7:+60390356 None:intergenic
TGTCATAAAAGAAGCAGAGT+GGG 0.567830 7:-60390381 MsG0780039237.01.T01:CDS
AAATAAAGGCCATTGATATG+TGG 0.571676 7:-60390598 MsG0780039237.01.T01:CDS
GGAGTTCATCTATCAACTGA+GGG 0.572805 7:-60390434 MsG0780039237.01.T01:CDS
ATTTGTGCCTCGTTGATCGG+AGG 0.590408 7:+60390819 None:intergenic
ATCTTGAGGAAAAGGCACAT+TGG 0.602253 7:+60390262 None:intergenic
TATTCCTGCAATGGTACATG+AGG 0.621940 7:+60391184 None:intergenic
GGGGAGTGAAATATTAACAA+AGG 0.628715 7:-60390414 MsG0780039237.01.T01:CDS
TTGCATGTTCAATAATACAT+GGG 0.642172 7:-60390133 MsG0780039237.01.T01:three_prime_UTR
GTCAAATTTCACTACTCACA+TGG 0.649272 7:+60389955 None:intergenic
AGAGCCTGTCACATAAGACT+CGG 0.665508 7:-60390860 MsG0780039237.01.T01:CDS
ATGTCATAAAAGAAGCAGAG+TGG 0.667998 7:-60390382 MsG0780039237.01.T01:CDS
TGGAGTTCATCTATCAACTG+AGG 0.669042 7:-60390435 MsG0780039237.01.T01:CDS
TAACTATTATTCCATCAACA+TGG 0.672155 7:+60389915 None:intergenic
TGTATTCGTCCATATCCAAG+TGG 0.698167 7:-60391214 MsG0780039237.01.T01:CDS
GAGTTCATCTATCAACTGAG+GGG 0.728386 7:-60390433 MsG0780039237.01.T01:CDS
CAGTAGTCCTCCGATCAACG+AGG 0.731081 7:-60390826 MsG0780039237.01.T01:CDS
GCAATGGTACATGAGGACCA+CGG 0.761576 7:+60391191 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAATCAAATTTAAAAAT+AGG + Chr7:60390014-60390033 None:intergenic 10.0%
!! ATTAATGTAACTTATTTAAT+TGG + Chr7:60389430-60389449 None:intergenic 10.0%
!! TAATAAAATCAATTTACATA+AGG + Chr7:60389029-60389048 None:intergenic 10.0%
!! TAATGACTTTAATATAAATT+AGG + Chr7:60391253-60391272 None:intergenic 10.0%
!!! AAAGATTATACATTTTTTAA+GGG + Chr7:60388460-60388479 None:intergenic 10.0%
!!! AAATAATAGACTTTTTAAAT+AGG + Chr7:60391393-60391412 None:intergenic 10.0%
!!! AATTTAAAACATTTTAGTTT+AGG + Chr7:60388723-60388742 None:intergenic 10.0%
!!! ATTTTTAAATTTGATTGTTT+TGG - Chr7:60390014-60390033 MsG0780039237.01.T01:three_prime_UTR 10.0%
!! AAAAAATGACAAAATATAGA+GGG - Chr7:60390242-60390261 MsG0780039237.01.T01:exon 15.0%
!! AATGAGGTAAAAAAAATAAT+AGG + Chr7:60391186-60391205 None:intergenic 15.0%
!! AATTTGCATATAGTATTATT+AGG + Chr7:60390665-60390684 None:intergenic 15.0%
!! AGATATATCATAGAATAATT+AGG + Chr7:60388496-60388515 None:intergenic 15.0%
!! ATTACATGTTCATTAATAAA+TGG - Chr7:60389220-60389239 MsG0780039237.01.T01:intron 15.0%
!! CTGTTTATTAAAAATGATAT+AGG + Chr7:60391547-60391566 None:intergenic 15.0%
!! TCAATAATAATTTAATTAGG+TGG - Chr7:60388749-60388768 MsG0780039237.01.T01:intron 15.0%
!! TTACATGTTCATTAATAAAT+GGG - Chr7:60389221-60389240 MsG0780039237.01.T01:intron 15.0%
!! TTGTTCAAAAATATAATGAA+AGG - Chr7:60390179-60390198 MsG0780039237.01.T01:three_prime_UTR 15.0%
!!! AAAAGTACATTGATAATAAA+TGG + Chr7:60388287-60388306 None:intergenic 15.0%
!!! CAAAGATTATACATTTTTTA+AGG + Chr7:60388461-60388480 None:intergenic 15.0%
!!! CAATTTATCTACTTTTAAAT+AGG - Chr7:60391280-60391299 MsG0780039237.01.T01:intron 15.0%
!!! TATTTTAGACTAAATATTTG+AGG + Chr7:60390042-60390061 None:intergenic 15.0%
!!! TTAATGTAACTTTTTTTTTG+AGG + Chr7:60389456-60389475 None:intergenic 15.0%
!!! TTTTGGTTTAATTTTAGTTT+TGG - Chr7:60389954-60389973 MsG0780039237.01.T01:three_prime_UTR 15.0%
!! AAAAATAATAGGCTTACAAA+AGG + Chr7:60391175-60391194 None:intergenic 20.0%
!! AAATCAAAATAATCACATCA+TGG + Chr7:60387889-60387908 None:intergenic 20.0%
!! AACTTATTTAATTGGTGTAT+TGG + Chr7:60389422-60389441 None:intergenic 20.0%
!! AATATCAATGATACAACAAT+TGG + Chr7:60389203-60389222 None:intergenic 20.0%
!! AATTACATTTAACAACACTA+TGG - Chr7:60389596-60389615 MsG0780039237.01.T01:intron 20.0%
!! ATTAAAAATGATATAGGCTT+AGG + Chr7:60391541-60391560 None:intergenic 20.0%
!! ATTACGGTATTAATAATTAG+AGG + Chr7:60387556-60387575 None:intergenic 20.0%
!! GAAAAAATGACAAAATATAG+AGG - Chr7:60390241-60390260 MsG0780039237.01.T01:exon 20.0%
!! TAAAGAAAAAGATGAATGTA+CGG + Chr7:60390304-60390323 None:intergenic 20.0%
!! TAGTAAATGTTATATGGATT+TGG - Chr7:60389914-60389933 MsG0780039237.01.T01:three_prime_UTR 20.0%
!! TGTCTTTAGTAAATGTTATA+TGG - Chr7:60389908-60389927 MsG0780039237.01.T01:three_prime_UTR 20.0%
!!! AAACTGTGAGATTTTAAAAT+AGG - Chr7:60390206-60390225 MsG0780039237.01.T01:three_prime_UTR 20.0%
!!! AACTGTGAGATTTTAAAATA+GGG - Chr7:60390207-60390226 MsG0780039237.01.T01:three_prime_UTR 20.0%
!!! ATCATTTTTAATAAACAGTC+AGG - Chr7:60391549-60391568 MsG0780039237.01.T01:CDS 20.0%
!!! ATTTTAAAATCTCACAGTTT+TGG + Chr7:60390206-60390225 None:intergenic 20.0%
!!! CGATCAATATTGAATTTTTA+TGG + Chr7:60391692-60391711 None:intergenic 20.0%
!!! GAATTTGGAATAATATATCA+AGG + Chr7:60388999-60389018 None:intergenic 20.0%
!!! GTTAGCCTTAATTATAATTT+AGG + Chr7:60390269-60390288 None:intergenic 20.0%
!!! TACTTTTAAATAGGCTAAAT+TGG - Chr7:60391289-60391308 MsG0780039237.01.T01:intron 20.0%
!!! TTAATACCGTAATGTTTTAT+TGG - Chr7:60387563-60387582 MsG0780039237.01.T01:intron 20.0%
!!! TTATTTCGAAATTGGTTTTA+AGG + Chr7:60391315-60391334 None:intergenic 20.0%
!!! TTTGGATAAAATTTTTCCTA+AGG - Chr7:60387725-60387744 MsG0780039237.01.T01:intron 20.0%
! ACAATGCATTATTATATGCA+GGG - Chr7:60390382-60390401 MsG0780039237.01.T01:CDS 25.0%
! ACAGAACCAATAAAACATTA+CGG + Chr7:60387572-60387591 None:intergenic 25.0%
! ACATAAGGATTCTATGAATT+TGG + Chr7:60389014-60389033 None:intergenic 25.0%
! AGGAATACATAGAAAATATG+AGG - Chr7:60388058-60388077 MsG0780039237.01.T01:intron 25.0%
! AGGGACCTAAATTATAATTA+AGG - Chr7:60390261-60390280 MsG0780039237.01.T01:CDS 25.0%
! ATGTTTGTTTCATGTAAGTA+TGG - Chr7:60388682-60388701 MsG0780039237.01.T01:intron 25.0%
! ATTAACTTCCAATATAGACT+TGG + Chr7:60388873-60388892 None:intergenic 25.0%
! CAAGTTACAATTATGTTAGA+TGG - Chr7:60389498-60389517 MsG0780039237.01.T01:intron 25.0%
! CTATATCCAATTGCATAATA+GGG + Chr7:60389394-60389413 None:intergenic 25.0%
! CTTAGAATGAATAGTTAGAT+GGG + Chr7:60390498-60390517 None:intergenic 25.0%
! GTCATTATATTCAATACCTT+AGG + Chr7:60387744-60387763 None:intergenic 25.0%
! TAACATGAAAACTCCAAAAT+CGG - Chr7:60390618-60390637 MsG0780039237.01.T01:CDS 25.0%
! TAACTATTATTCCATCAACA+TGG + Chr7:60389314-60389333 None:intergenic 25.0%
! TCGAATGATTCAATGAATTA+GGG + Chr7:60389659-60389678 None:intergenic 25.0%
! TCTATATCCAATTGCATAAT+AGG + Chr7:60389395-60389414 None:intergenic 25.0%
! TCTTAGAATGAATAGTTAGA+TGG + Chr7:60390499-60390518 None:intergenic 25.0%
! TTGAATATAATGACTGATGA+AGG - Chr7:60387750-60387769 MsG0780039237.01.T01:intron 25.0%
! TTGATCCAAAAAATTTCCTA+AGG - Chr7:60387779-60387798 MsG0780039237.01.T01:intron 25.0%
! TTGCATGTTCAATAATACAT+GGG - Chr7:60389093-60389112 MsG0780039237.01.T01:intron 25.0%
! TTTAACACAATTGAAATACG+TGG - Chr7:60388151-60388170 MsG0780039237.01.T01:intron 25.0%
!! AGGATATCAATTTTGCAAAA+TGG + Chr7:60389994-60390013 None:intergenic 25.0%
!! AGTTAGATATTTGTCTTTTG+AGG + Chr7:60390742-60390761 None:intergenic 25.0%
!! ATCATCTCATGATGAAATTT+TGG - Chr7:60389937-60389956 MsG0780039237.01.T01:three_prime_UTR 25.0%
!! GACTTTTTAAATAGGCTTTA+AGG + Chr7:60391385-60391404 None:intergenic 25.0%
!! GTTTGATTATTTCTTAGTGA+TGG - Chr7:60388771-60388790 MsG0780039237.01.T01:intron 25.0%
!! TACAGTGAAATAGGTTTTTA+AGG + Chr7:60391359-60391378 None:intergenic 25.0%
!! TATACTTTTCCCCAATTTTT+TGG + Chr7:60389739-60389758 None:intergenic 25.0%
!! TGATTTGCCTAAAATTGTAA+AGG + Chr7:60390897-60390916 None:intergenic 25.0%
!!! ACTCACACTTAGTTTTATAT+TGG - Chr7:60389357-60389376 MsG0780039237.01.T01:intron 25.0%
!!! ATATGCCTTAGGAAATTTTT+TGG + Chr7:60387787-60387806 None:intergenic 25.0%
!!! ATGTTTTTCGAAAGGAAATA+TGG - Chr7:60389058-60389077 MsG0780039237.01.T01:intron 25.0%
!!! CACTTTTAAAGTGAATAAGT+GGG + Chr7:60390431-60390450 None:intergenic 25.0%
!!! CATGTTATTTTATTGTGTTG+TGG + Chr7:60390605-60390624 None:intergenic 25.0%
!!! TACATTTTTTAAGGGAACAA+AGG + Chr7:60388452-60388471 None:intergenic 25.0%
!!! TCACTTTTAAAGTGAATAAG+TGG + Chr7:60390432-60390451 None:intergenic 25.0%
!!! TTTTTTGTCAAGTAATCTAG+TGG + Chr7:60390462-60390481 None:intergenic 25.0%
AAAGCTCGTATATATAGTCT+TGG - Chr7:60390861-60390880 MsG0780039237.01.T01:CDS 30.0%
AAATAAAGGCCATTGATATG+TGG - Chr7:60388628-60388647 MsG0780039237.01.T01:intron 30.0%
AACTATTGCGTCCAAAAAAT+TGG - Chr7:60389725-60389744 MsG0780039237.01.T01:intron 30.0%
AAGACTTGTCTATCACTATA+AGG - Chr7:60391333-60391352 MsG0780039237.01.T01:intron 30.0%
AAGCTTAGACTATCAAAGTT+TGG + Chr7:60391123-60391142 None:intergenic 30.0%
ACCTATTTAAAAGTCTGGTA+TGG - Chr7:60391207-60391226 MsG0780039237.01.T01:CDS 30.0%
ACTATTGCGTCCAAAAAATT+GGG - Chr7:60389726-60389745 MsG0780039237.01.T01:intron 30.0%
ACTTATGTATATGCTGCAAA+TGG + Chr7:60387835-60387854 None:intergenic 30.0%
AGAAGATTCACCTTATGATA+TGG - Chr7:60388908-60388927 MsG0780039237.01.T01:intron 30.0%
ATATGTGACTGATGTACATT+TGG - Chr7:60389620-60389639 MsG0780039237.01.T01:intron 30.0%
ATGATATGGTTTCTCTTGAT+GGG - Chr7:60388922-60388941 MsG0780039237.01.T01:intron 30.0%
CAATGCATTATTATATGCAG+GGG - Chr7:60390383-60390402 MsG0780039237.01.T01:CDS 30.0%
CAATTCAGAAAAGAGATGAT+TGG - Chr7:60388655-60388674 MsG0780039237.01.T01:intron 30.0%
CATTGACCTATTTAAAAGTC+TGG - Chr7:60391202-60391221 MsG0780039237.01.T01:CDS 30.0%
CCATTAAATTGCTTACTTGT+CGG - Chr7:60390523-60390542 MsG0780039237.01.T01:intron 30.0%
CCTAAAATTGTAAAGGAAGA+GGG + Chr7:60390890-60390909 None:intergenic 30.0%
CTTGCATGTTCAATAATACA+TGG - Chr7:60389092-60389111 MsG0780039237.01.T01:intron 30.0%
GAAGATTGCTACTCATATAA+TGG - Chr7:60388080-60388099 MsG0780039237.01.T01:intron 30.0%
GACAATGCATTATTATATGC+AGG - Chr7:60390381-60390400 MsG0780039237.01.T01:CDS 30.0%
GATCAACATCAACAAAATTG+TGG + Chr7:60390102-60390121 None:intergenic 30.0%
GTATTATTAGGTAATGATCG+TGG + Chr7:60390653-60390672 None:intergenic 30.0%
GTCGAATGATTCAATGAATT+AGG + Chr7:60389660-60389679 None:intergenic 30.0%
GTTCAAAAGAACTATCATTC+TGG - Chr7:60391015-60391034 MsG0780039237.01.T01:intron 30.0%
TATAGTCAAGAGAAGAGATA+TGG + Chr7:60389805-60389824 None:intergenic 30.0%
TATGATATGGTTTCTCTTGA+TGG - Chr7:60388921-60388940 MsG0780039237.01.T01:intron 30.0%
TATGTGACTGATGTACATTT+GGG - Chr7:60389621-60389640 MsG0780039237.01.T01:intron 30.0%
TCAAGAGAAACCATATCATA+AGG + Chr7:60388921-60388940 None:intergenic 30.0%
TCAATCATGGTGAAGATTAT+TGG + Chr7:60390952-60390971 None:intergenic 30.0%
TTAAGGTCTTACAGTGAAAT+AGG + Chr7:60391368-60391387 None:intergenic 30.0%
TTGATACCCTATTATGCAAT+TGG - Chr7:60389385-60389404 MsG0780039237.01.T01:intron 30.0%
TTTGCAAAATGGTGAAACTA+GGG + Chr7:60389983-60390002 None:intergenic 30.0%
! AAATTGGGGAAAAGTATATC+AGG - Chr7:60389741-60389760 MsG0780039237.01.T01:intron 30.0%
! AAGAACTATCATTCTGGTTA+TGG - Chr7:60391021-60391040 MsG0780039237.01.T01:intron 30.0%
! AATATATTCAGAAGCGTGTT+TGG - Chr7:60388587-60388606 MsG0780039237.01.T01:intron 30.0%
! ATGCGTATCATTTTCAATCA+TGG + Chr7:60390965-60390984 None:intergenic 30.0%
! ATTTTCACCCCTAAAAATGA+GGG + Chr7:60391087-60391106 None:intergenic 30.0%
! GACTTTTAAATAGGTCAATG+AGG + Chr7:60391202-60391221 None:intergenic 30.0%
! TATTTTCACCCCTAAAAATG+AGG + Chr7:60391088-60391107 None:intergenic 30.0%
! TTGAGCTTTTACTAAGCTTT+TGG + Chr7:60389698-60389717 None:intergenic 30.0%
! TTTTCTATGTATTCCTGCAA+TGG + Chr7:60388054-60388073 None:intergenic 30.0%
! TTTTGCAAAATGGTGAAACT+AGG + Chr7:60389984-60390003 None:intergenic 30.0%
!! AAGCTTAAAGTGTTTTTGAC+TGG - Chr7:60390817-60390836 MsG0780039237.01.T01:CDS 30.0%
!! ACCTAACATTGATTTGATGT+AGG - Chr7:60387647-60387666 MsG0780039237.01.T01:intron 30.0%
!! ATGCTTCAATGTTTTTCGAA+AGG - Chr7:60389050-60389069 MsG0780039237.01.T01:intron 30.0%
!! GACAAGTCTTATTTCGAAAT+TGG + Chr7:60391323-60391342 None:intergenic 30.0%
!! GTTTTAAATGACGTGGTATA+AGG + Chr7:60390140-60390159 None:intergenic 30.0%
!! TATTTGTCTTTTGAGGATGT+TGG + Chr7:60390735-60390754 None:intergenic 30.0%
!! TCATTTTTAGGGGTGAAAAT+AGG - Chr7:60391087-60391106 MsG0780039237.01.T01:intron 30.0%
!!! GTGATAAGTTTTAAATGACG+TGG + Chr7:60390147-60390166 None:intergenic 30.0%
AAAAGATGAATGTACGGTCA+TGG + Chr7:60390298-60390317 None:intergenic 35.0%
AAGTACACAATCACCAATGA+TGG + Chr7:60387979-60387998 None:intergenic 35.0%
AAGTTAATGCCAGCTGAATT+TGG - Chr7:60388885-60388904 MsG0780039237.01.T01:intron 35.0%
AATGAGCTCAGTGATGAATT+TGG - Chr7:60388534-60388553 MsG0780039237.01.T01:intron 35.0%
AATTGCAGACCACATATCAA+TGG + Chr7:60388640-60388659 None:intergenic 35.0%
ATAGGCTTACAAAAGGTCAT+AGG + Chr7:60391168-60391187 None:intergenic 35.0%
ATGAGCTCAGTGATGAATTT+GGG - Chr7:60388535-60388554 MsG0780039237.01.T01:intron 35.0%
ATGGTGAAGATTATTGGTGT+TGG + Chr7:60390946-60390965 None:intergenic 35.0%
ATGTCATAAAAGAAGCAGAG+TGG - Chr7:60388844-60388863 MsG0780039237.01.T01:intron 35.0%
CCGACAAGTAAGCAATTTAA+TGG + Chr7:60390526-60390545 None:intergenic 35.0%
CTATTGCGTCCAAAAAATTG+GGG - Chr7:60389727-60389746 MsG0780039237.01.T01:intron 35.0%
GACAATGCATAATATATGCC+AGG + Chr7:60387596-60387615 None:intergenic 35.0%
GCCTAAAATTGTAAAGGAAG+AGG + Chr7:60390891-60390910 None:intergenic 35.0%
GCCTACATCAAATCAATGTT+AGG + Chr7:60387651-60387670 None:intergenic 35.0%
GGGGAGTGAAATATTAACAA+AGG - Chr7:60388812-60388831 MsG0780039237.01.T01:intron 35.0%
GTCAAATTTCACTACTCACA+TGG + Chr7:60389274-60389293 None:intergenic 35.0%
GTGTCGTGAGATGAAAATAA+AGG - Chr7:60388614-60388633 MsG0780039237.01.T01:intron 35.0%
TAAAGCTAATCACGTGTCTT+AGG + Chr7:60389575-60389594 None:intergenic 35.0%
TAGCTCATCACTAAAATGAG+TGG + Chr7:60391629-60391648 None:intergenic 35.0%
TATGTATATGCTGCAAATGG+TGG + Chr7:60387832-60387851 None:intergenic 35.0%
TGTCATAAAAGAAGCAGAGT+GGG - Chr7:60388845-60388864 MsG0780039237.01.T01:intron 35.0%
TTGAGGGTAAAATATGCCTT+AGG + Chr7:60387798-60387817 None:intergenic 35.0%
! AACTATCATTCTGGTTATGG+CGG - Chr7:60391024-60391043 MsG0780039237.01.T01:intron 35.0%
! CCCTCTTCCTTTACAATTTT+AGG - Chr7:60390887-60390906 MsG0780039237.01.T01:intron 35.0%
! GCCATACCAGACTTTTAAAT+AGG + Chr7:60391211-60391230 None:intergenic 35.0%
! TCATTGGTGATTGTGTACTT+TGG - Chr7:60387979-60387998 MsG0780039237.01.T01:intron 35.0%
! TGGTGGTATTACTTAAGTTG+AGG + Chr7:60387815-60387834 None:intergenic 35.0%
! TTTTAATCGAGCCATGTTGA+TGG - Chr7:60389300-60389319 MsG0780039237.01.T01:intron 35.0%
!! CGTTGTATCCCTCATTTTTA+GGG - Chr7:60391076-60391095 MsG0780039237.01.T01:intron 35.0%
!! GGTGGTATTACTTAAGTTGA+GGG + Chr7:60387814-60387833 None:intergenic 35.0%
!! GTTGTATCCCTCATTTTTAG+GGG - Chr7:60391077-60391096 MsG0780039237.01.T01:intron 35.0%
!! TCGTTGTATCCCTCATTTTT+AGG - Chr7:60391075-60391094 MsG0780039237.01.T01:intron 35.0%
!! TGTAGGCTGATATAGTTTTG+CGG - Chr7:60387664-60387683 MsG0780039237.01.T01:intron 35.0%
!! TTAATTTGTGCCTCGTTGAT+CGG + Chr7:60388413-60388432 None:intergenic 35.0%
!!! GTGGTTTTTTTCTCCGATTT+TGG + Chr7:60390634-60390653 None:intergenic 35.0%
!!! TGTTTTATTGGTTCTGTACC+TGG - Chr7:60387575-60387594 MsG0780039237.01.T01:intron 35.0%
ACAACTGTCAATGACGACAA+TGG + Chr7:60390994-60391013 None:intergenic 40.0%
ACCTACGGTATGATCTGTTT+AGG + Chr7:60391575-60391594 None:intergenic 40.0%
AGGCTTGTATGTATGCTTTC+AGG + Chr7:60391233-60391252 None:intergenic 40.0%
AGTGGGAACCAAGTCTATAT+TGG - Chr7:60388862-60388881 MsG0780039237.01.T01:intron 40.0%
ATATGGACGGATGTAGTGTA+AGG + Chr7:60389788-60389807 None:intergenic 40.0%
ATCACTAAAATGAGTGGCGT+TGG + Chr7:60391623-60391642 None:intergenic 40.0%
ATTATTATATGCAGGGGTCG+GGG - Chr7:60390389-60390408 MsG0780039237.01.T01:CDS 40.0%
CACCTCTGATACTCTTATAC+TGG - Chr7:60387923-60387942 MsG0780039237.01.T01:intron 40.0%
CACTCTACATCTTGAGGAAA+AGG + Chr7:60388975-60388994 None:intergenic 40.0%
CATTATTATATGCAGGGGTC+GGG - Chr7:60390388-60390407 MsG0780039237.01.T01:CDS 40.0%
CGTGGTATAAGGTTGACTAT+TGG + Chr7:60390129-60390148 None:intergenic 40.0%
GAATCTTCTCCAAATTCAGC+TGG + Chr7:60388897-60388916 None:intergenic 40.0%
GAGTTCATCTATCAACTGAG+GGG - Chr7:60388793-60388812 MsG0780039237.01.T01:intron 40.0%
GCATTATTATATGCAGGGGT+CGG - Chr7:60390387-60390406 MsG0780039237.01.T01:CDS 40.0%
GGAGTTCATCTATCAACTGA+GGG - Chr7:60388792-60388811 MsG0780039237.01.T01:intron 40.0%
GGGTGAACATATCTTGATCA+TGG - Chr7:60389241-60389260 MsG0780039237.01.T01:intron 40.0%
GTCAAGAGAAGAGATATGGA+CGG + Chr7:60389801-60389820 None:intergenic 40.0%
TATTCCTGCAATGGTACATG+AGG + Chr7:60388045-60388064 None:intergenic 40.0%
TCACTAAAATGAGTGGCGTT+GGG + Chr7:60391622-60391641 None:intergenic 40.0%
TGGAGTTCATCTATCAACTG+AGG - Chr7:60388791-60388810 MsG0780039237.01.T01:intron 40.0%
TGTAAGGCATGGTGTAACTA+TGG + Chr7:60389772-60389791 None:intergenic 40.0%
TGTATTCGTCCATATCCAAG+TGG - Chr7:60388012-60388031 MsG0780039237.01.T01:intron 40.0%
TTGAGGATGTTGGTGTACTA+GGG + Chr7:60390725-60390744 None:intergenic 40.0%
TTTAGGGGTGAAAATAGGTC+AGG - Chr7:60391092-60391111 MsG0780039237.01.T01:intron 40.0%
TTTGAGGATGTTGGTGTACT+AGG + Chr7:60390726-60390745 None:intergenic 40.0%
! ATCTTGAGGAAAAGGCACAT+TGG + Chr7:60388967-60388986 None:intergenic 40.0%
! CTTTTCCTCAAGATGTAGAG+TGG - Chr7:60388973-60388992 MsG0780039237.01.T01:intron 40.0%
! GATATGCTGCTTGGAATTCA+AGG - Chr7:60387688-60387707 MsG0780039237.01.T01:intron 40.0%
! TAATCCGAGTCTTATGTGAC+AGG + Chr7:60388373-60388392 None:intergenic 40.0%
! TGAGCTTAGCTCAGTTGATA+TGG + Chr7:60387618-60387637 None:intergenic 40.0%
! TTGGTGATTGTGTACTTTGG+TGG - Chr7:60387982-60388001 MsG0780039237.01.T01:intron 40.0%
! TTTGGACGCAATAGTTGATG+TGG + Chr7:60389721-60389740 None:intergenic 40.0%
!! GACCAGTATAAGAGTATCAG+AGG + Chr7:60387928-60387947 None:intergenic 40.0%
!! GTAGGCTGATATAGTTTTGC+GGG - Chr7:60387665-60387684 MsG0780039237.01.T01:intron 40.0%
!! TAGGCTGATATAGTTTTGCG+GGG - Chr7:60387666-60387685 MsG0780039237.01.T01:intron 40.0%
AGAGCCTGTCACATAAGACT+CGG - Chr7:60388366-60388385 MsG0780039237.01.T01:intron 45.0%
ATGAGCATAGCTCAATTGGC+AGG - Chr7:60390358-60390377 MsG0780039237.01.T01:CDS 45.0%
CACCAATGATGGTTGCTCAA+TGG + Chr7:60387968-60387987 None:intergenic 45.0%
CCAATTGAGCTATGCTCATG+GGG + Chr7:60390357-60390376 None:intergenic 45.0%
CTAATCACGTGTCTTAGGCA+TGG + Chr7:60389570-60389589 None:intergenic 45.0%
GCCAATTGAGCTATGCTCAT+GGG + Chr7:60390358-60390377 None:intergenic 45.0%
GCCTAAACAGATCATACCGT+AGG - Chr7:60391571-60391590 MsG0780039237.01.T01:intron 45.0%
GGGTGAGCAAAACTTGATCA+TGG - Chr7:60389113-60389132 MsG0780039237.01.T01:intron 45.0%
GTGAATAAGTGGGATGTCCA+CGG + Chr7:60390421-60390440 None:intergenic 45.0%
TGAGCATAGCTCAATTGGCA+GGG - Chr7:60390359-60390378 MsG0780039237.01.T01:CDS 45.0%
TGCCAATTGAGCTATGCTCA+TGG + Chr7:60390359-60390378 None:intergenic 45.0%
TGCCATTGAGCAACCATCAT+TGG - Chr7:60387963-60387982 MsG0780039237.01.T01:intron 45.0%
TTCTCACTTGTACGCTCGTA+AGG - Chr7:60387516-60387535 MsG0780039237.01.T01:three_prime_UTR 45.0%
! AGGTCAGACTCAGTTTTCGT+AGG + Chr7:60391148-60391167 None:intergenic 45.0%
! GGGGAAAAGTATATCAGGTG+TGG - Chr7:60389746-60389765 MsG0780039237.01.T01:intron 45.0%
!! ATAGACATGGTGGGTCTACA+TGG + Chr7:60391598-60391617 None:intergenic 45.0%
!! TGGTTATGGCGGCTATTTCT+TGG - Chr7:60391035-60391054 MsG0780039237.01.T01:intron 45.0%
!! TTATCAATAATAATTTAATT+AGG - Chr7:60388746-60388765 MsG0780039237.01.T01:intron 5.0%
!!! ATTTTTTCTTTTATTTTTTA+TGG - Chr7:60389164-60389183 MsG0780039237.01.T01:intron 5.0%
ATTTGTGCCTCGTTGATCGG+AGG + Chr7:60388410-60388429 None:intergenic 50.0%
CAAGGCCACTCTACATCTTG+AGG + Chr7:60388981-60389000 None:intergenic 50.0%
CCCCATGAGCATAGCTCAAT+TGG - Chr7:60390354-60390373 MsG0780039237.01.T01:CDS 50.0%
GACGGATGTAGTGTAAGGCA+TGG + Chr7:60389783-60389802 None:intergenic 50.0%
GCAATGGTACATGAGGACCA+CGG + Chr7:60388038-60388057 None:intergenic 50.0%
GCGTTGGGAATAGACATGGT+GGG + Chr7:60391607-60391626 None:intergenic 50.0%
GGATGTTGGTGTACTAGGGT+TGG + Chr7:60390721-60390740 None:intergenic 50.0%
GGGTGAAAATAGGTCAGGTC+AGG - Chr7:60391097-60391116 MsG0780039237.01.T01:intron 50.0%
GTTGGTGTACTAGGGTTGGA+GGG + Chr7:60390717-60390736 None:intergenic 50.0%
TCAACTGAGCTAAGCTCACG+AGG - Chr7:60387620-60387639 MsG0780039237.01.T01:intron 50.0%
TGGTCCTCATGTACCATTGC+AGG - Chr7:60388038-60388057 MsG0780039237.01.T01:intron 50.0%
TGTTGGTGTACTAGGGTTGG+AGG + Chr7:60390718-60390737 None:intergenic 50.0%
TTGAGCTATGCTCATGGGGA+CGG + Chr7:60390353-60390372 None:intergenic 50.0%
! AAGGCGTGCTGTGCAAGTTT+TGG - Chr7:60387707-60387726 MsG0780039237.01.T01:intron 50.0%
! AGTGGCGTTGGGAATAGACA+TGG + Chr7:60391611-60391630 None:intergenic 50.0%
! TTTTGCGGGGATATGCTGCT+TGG - Chr7:60387679-60387698 MsG0780039237.01.T01:intron 50.0%
CAGTAGTCCTCCGATCAACG+AGG - Chr7:60388400-60388419 MsG0780039237.01.T01:intron 55.0%
GGTGGGTCTACATGGACCTA+CGG + Chr7:60391590-60391609 None:intergenic 55.0%
! GGCGTTGGGAATAGACATGG+TGG + Chr7:60391608-60391627 None:intergenic 55.0%
ACATGAGGACCACGGCCACT+TGG + Chr7:60388030-60388049 None:intergenic 60.0%
CGTCCATATCCAAGTGGCCG+TGG - Chr7:60388018-60388037 MsG0780039237.01.T01:intron 60.0%
GGACCACGGCCACTTGGATA+TGG + Chr7:60388024-60388043 None:intergenic 60.0%
AGGGGTCGGGGTTTGAACCG+TGG - Chr7:60390401-60390420 MsG0780039237.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 60387494 60391754 60387494 ID=MsG0780039237.01;Name=MsG0780039237.01
Chr7 mRNA 60387494 60391754 60387494 ID=MsG0780039237.01.T01;Parent=MsG0780039237.01;Name=MsG0780039237.01.T01;_AED=0.41;_eAED=0.43;_QI=0|0.83|0.85|1|0.83|0.71|7|460|231
Chr7 exon 60387494 60387555 60387494 ID=MsG0780039237.01.T01:exon:16236;Parent=MsG0780039237.01.T01
Chr7 exon 60389849 60390460 60389849 ID=MsG0780039237.01.T01:exon:16235;Parent=MsG0780039237.01.T01
Chr7 exon 60390554 60390703 60390554 ID=MsG0780039237.01.T01:exon:16234;Parent=MsG0780039237.01.T01
Chr7 exon 60390807 60390880 60390807 ID=MsG0780039237.01.T01:exon:16233;Parent=MsG0780039237.01.T01
Chr7 exon 60391147 60391287 60391147 ID=MsG0780039237.01.T01:exon:16232;Parent=MsG0780039237.01.T01
Chr7 exon 60391502 60391579 60391502 ID=MsG0780039237.01.T01:exon:16231;Parent=MsG0780039237.01.T01
Chr7 exon 60391716 60391754 60391716 ID=MsG0780039237.01.T01:exon:16230;Parent=MsG0780039237.01.T01
Chr7 CDS 60391716 60391754 60391716 ID=MsG0780039237.01.T01:cds;Parent=MsG0780039237.01.T01
Chr7 CDS 60391502 60391579 60391502 ID=MsG0780039237.01.T01:cds;Parent=MsG0780039237.01.T01
Chr7 CDS 60391147 60391287 60391147 ID=MsG0780039237.01.T01:cds;Parent=MsG0780039237.01.T01
Chr7 CDS 60390807 60390880 60390807 ID=MsG0780039237.01.T01:cds;Parent=MsG0780039237.01.T01
Chr7 CDS 60390554 60390703 60390554 ID=MsG0780039237.01.T01:cds;Parent=MsG0780039237.01.T01
Chr7 CDS 60390247 60390460 60390247 ID=MsG0780039237.01.T01:cds;Parent=MsG0780039237.01.T01
Chr7 three_prime_UTR 60389849 60390246 60389849 ID=MsG0780039237.01.T01:three_prime_utr;Parent=MsG0780039237.01.T01
Chr7 three_prime_UTR 60387494 60387555 60387494 ID=MsG0780039237.01.T01:three_prime_utr;Parent=MsG0780039237.01.T01
Gene Sequence

>MsG0780039237.01.T01

ATGAAGGTTGGGGAGCTACTCTTTCTCACTTGTACGCTCGCTGATATAGTTTTGCGGGGATATGCTGCTTGGAATTCAAGGCGTGCTGTGCAAGTTTTGGATAAAATTTTTCCTAAGAATGCCATTGAGCAACCATCATTGGTGATTGTGTACTTTGGTGGTAATGATTGTATTCGTCCATATCCAAGTGGCCGTGGTCCTCATGTACCATTGCAGGAATACATAGAAAATATGAGGAAGATTGCTACTCATATAATGAGCCTGTCACATAAGACTCGGATTATATTTCTCAGTAGTCCTCCGATCAACGAGGCACAAATTAAGATCAACATTGATGAATTTGGGCAACAAATAAGAACAAATGAAATAAGTCGAATATATTCAGAAGCGTGTTTGGATATGTGTCGTGAGATGAAAATAAAGGCCATTGATATGTGGTCTGCAATTCAGAAAAGAGATGATTGGAGAGATGTTTGTTTCATTGATGGAGTTCATCTATCAACTGAGGGGAGTGAAATATTAACAAAGGAGATATTGAATGTCATAAAAGAAGCAGAGTGGGAACCAAGTCTATATTGGAAGTTAATGCCAGCTGAATTTGGAGAAGATTCACCTTATGATATGGTTTCTCTTGATGGGAAGACAAATATTAATTACTCCAATGTGCCTTTTCCTCAAGATGTAGAGTGGCCTTGA

Protein sequence

>MsG0780039237.01.T01

MKVGELLFLTCTLADIVLRGYAAWNSRRAVQVLDKIFPKNAIEQPSLVIVYFGGNDCIRPYPSGRGPHVPLQEYIENMRKIATHIMSLSHKTRIIFLSSPPINEAQIKINIDEFGQQIRTNEISRIYSEACLDMCREMKIKAIDMWSAIQKRDDWRDVCFIDGVHLSTEGSEILTKEILNVIKEAEWEPSLYWKLMPAEFGEDSPYDMVSLDGKTNINYSNVPFPQDVEWP*