AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028013.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028013.01.T01 MTR_5g070210 89.308 318 26 2 1 318 1 310 0.0 583
MsG0580028013.01.T01 MTR_5g070250 72.059 204 56 1 114 316 20 223 8.65e-110 318
MsG0580028013.01.T01 MTR_5g070220 79.433 141 29 0 178 318 1 141 1.25e-81 244
MsG0580028013.01.T01 MTR_5g070230 60.156 128 49 1 46 171 3 130 5.09e-50 165
MsG0580028013.01.T01 MTR_3g074950 74.648 71 18 0 230 300 2 72 1.06e-33 119
MsG0580028013.01.T01 MTR_5g070270 49.606 127 42 8 1 116 1 116 3.74e-22 90.1
MsG0580028013.01.T01 MTR_1g095500 34.194 155 93 2 81 229 28 179 2.75e-21 93.2
MsG0580028013.01.T01 MTR_8g073540 34.839 155 92 2 81 229 28 179 2.83e-21 93.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028013.01.T01 AT5G58770 68.644 236 74 0 82 317 73 308 1.14e-124 359
MsG0580028013.01.T01 AT5G58780 58.159 239 100 0 79 317 63 301 9.51e-99 293
MsG0580028013.01.T01 AT5G58782 55.967 243 107 0 75 317 46 288 1.58e-98 292
MsG0580028013.01.T01 AT5G58782 55.967 243 107 0 75 317 64 306 2.30e-98 292
MsG0580028013.01.T01 AT2G23410 54.622 238 107 1 81 317 65 302 2.35e-91 275
MsG0580028013.01.T01 AT5G58784 56.502 223 97 0 85 307 69 291 3.21e-89 269
MsG0580028013.01.T01 AT2G23400 49.791 239 105 2 79 317 63 286 2.35e-78 241
MsG0580028013.01.T01 AT2G17570 34.263 251 130 3 86 308 39 282 1.41e-40 144
MsG0580028013.01.T01 AT2G23400 48.780 123 63 0 79 201 63 185 1.63e-35 127
MsG0580028013.01.T01 AT5G60510 31.780 236 143 6 86 311 35 262 6.74e-30 115
MsG0580028013.01.T01 AT5G60500 31.064 235 146 5 86 311 34 261 5.72e-29 112

Find 90 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAACGTCTCTGTCTATTT+TGG 0.158938 5:-73164246 None:intergenic
AGAAAACTTTGGCCAGATTT+TGG 0.177145 5:+73164190 MsG0580028013.01.T01:CDS
TGCCAAAATAAGATGGAATT+TGG 0.186602 5:-73163936 None:intergenic
TACCAAATTCCATCTTATTT+TGG 0.187683 5:+73163934 MsG0580028013.01.T01:CDS
AATGCCATCTTGCACTTTCT+TGG 0.210412 5:-73164008 None:intergenic
TTGCATTCTCAACCGATAAT+TGG 0.274745 5:+73161626 MsG0580028013.01.T01:CDS
CAAAATAGACAGAGACGTTT+TGG 0.290018 5:+73164247 MsG0580028013.01.T01:CDS
TGTTAGTAATAATGTGAATA+TGG 0.301039 5:-73161195 None:intergenic
CATATACTTATTCTCCAATA+TGG 0.302977 5:+73164290 MsG0580028013.01.T01:three_prime_UTR
TAAGCATGTGGCGGTGATTA+TGG 0.306230 5:+73161477 MsG0580028013.01.T01:CDS
GTGTTATAGTTGGGGAATAA+AGG 0.324367 5:+73161591 MsG0580028013.01.T01:CDS
TAATTTCTTGTTATGGCAAT+TGG 0.324656 5:+73164144 MsG0580028013.01.T01:CDS
CTCATTCTCGATATTCTTCA+AGG 0.331892 5:+73161329 MsG0580028013.01.T01:CDS
AATAAATACCACAACCATAT+TGG 0.339414 5:-73164304 None:intergenic
GGGTTAGTAATTTCTTGTTA+TGG 0.341933 5:+73164137 MsG0580028013.01.T01:CDS
GCAAGATGGCATTATTCATT+TGG 0.346742 5:+73164018 MsG0580028013.01.T01:CDS
AACTCATCCTTTCCAAAATC+TGG 0.362218 5:-73164202 None:intergenic
CTGGTCCGTATTAGTAAATC+CGG 0.368742 5:-73164103 None:intergenic
GTGGTAGTAGTAGTCATCTT+TGG 0.377306 5:-73161271 None:intergenic
TTCAGAAATGGAGCCATTGC+CGG 0.378511 5:+73161429 MsG0580028013.01.T01:CDS
CATATTGGAGAATAAGTATA+TGG 0.382665 5:-73164289 None:intergenic
ATGGGAGGTGGGCAAAGATG+AGG 0.382978 5:+73161506 MsG0580028013.01.T01:CDS
GGTGAGGTTGTGTTATAGTT+GGG 0.400487 5:+73161582 MsG0580028013.01.T01:CDS
CTTACCCGGATTTACTAATA+CGG 0.419675 5:+73164098 MsG0580028013.01.T01:CDS
TACCACTAACCACCCTCATC+GGG 0.419799 5:+73161288 MsG0580028013.01.T01:CDS
CTTAGGTCGAATCCAATTAT+CGG 0.425110 5:-73161638 None:intergenic
GATTCGGCTAATGTGGGAAA+TGG 0.442388 5:-73161161 None:intergenic
AAATGAAAATATTATTGAAA+AGG 0.447113 5:+73164048 MsG0580028013.01.T01:CDS
TGGTGAGGTTGTGTTATAGT+TGG 0.451686 5:+73161581 MsG0580028013.01.T01:CDS
CGGTGATTATGGACGGGAAT+GGG 0.455731 5:+73161488 MsG0580028013.01.T01:CDS
TGGGAGGTGGGCAAAGATGA+GGG 0.455809 5:+73161507 MsG0580028013.01.T01:CDS
GGGAGGTGGGCAAAGATGAG+GGG 0.456021 5:+73161508 MsG0580028013.01.T01:CDS
GGAATTCAAATATCTGTGAT+TGG 0.460356 5:+73163842 MsG0580028013.01.T01:CDS
ACGGACCAGTGGAGAACTTA+GGG 0.473431 5:+73164117 MsG0580028013.01.T01:CDS
AAGTCTTATTGTATTTATTG+TGG 0.476648 5:+73164359 MsG0580028013.01.T01:three_prime_UTR
GCTTGCAGTTCCTCCGGCAA+TGG 0.479704 5:-73161442 None:intergenic
GGAGGTGGGCAAAGATGAGG+GGG 0.479875 5:+73161509 MsG0580028013.01.T01:CDS
CGATAATTGGATTCGACCTA+AGG 0.480618 5:+73161639 MsG0580028013.01.T01:CDS
CCGTCTGCGGGTCATGTAGC+CGG 0.489572 5:+73161538 MsG0580028013.01.T01:CDS
CTTATTCTCCAATATGGTTG+TGG 0.490071 5:+73164296 MsG0580028013.01.T01:three_prime_UTR
TTATGGACGGGAATGGGAGG+TGG 0.493196 5:+73161494 MsG0580028013.01.T01:CDS
AGCTTACTGCCAAAATAAGA+TGG 0.496898 5:-73163943 None:intergenic
TGATAACGATTCGGCTAATG+TGG 0.497047 5:-73161168 None:intergenic
TGCGGCAATAGTGACGCGTT+TGG 0.497199 5:-73161359 None:intergenic
TATGGTTGTGGTATTTATTG+TGG 0.502620 5:+73164308 MsG0580028013.01.T01:three_prime_UTR
CGTATTAGTAAATCCGGGTA+AGG 0.505626 5:-73164097 None:intergenic
AGCTCCGCTTGCAGTTCCTC+CGG 0.507703 5:-73161448 None:intergenic
TACGGACCAGTGGAGAACTT+AGG 0.513930 5:+73164116 MsG0580028013.01.T01:CDS
TATGGTTAGTGATAACGATT+CGG 0.516973 5:-73161177 None:intergenic
GCGGTGATTATGGACGGGAA+TGG 0.517607 5:+73161487 MsG0580028013.01.T01:CDS
ATGGTTGTGGTATTTATTGT+GGG 0.530122 5:+73164309 MsG0580028013.01.T01:three_prime_UTR
CTACCACTAACCACCCTCAT+CGG 0.530891 5:+73161287 MsG0580028013.01.T01:CDS
CGGCTACATGACCCGCAGAC+GGG 0.532986 5:-73161537 None:intergenic
AATTTATTGTTCTTTCAAAG+AGG 0.535873 5:-73161792 None:intergenic
AAGAGTTCTATCTAGTGGCA+TGG 0.545374 5:-73161236 None:intergenic
GTGAGGTTGTGTTATAGTTG+GGG 0.555675 5:+73161583 MsG0580028013.01.T01:CDS
ATAATCACCGCCACATGCTT+AGG 0.560502 5:-73161475 None:intergenic
TTGTACAGAATTTCCTTACC+CGG 0.560525 5:+73164084 MsG0580028013.01.T01:CDS
TATGGACGGGAATGGGAGGT+GGG 0.565954 5:+73161495 MsG0580028013.01.T01:CDS
ACTAACCCTAAGTTCTCCAC+TGG 0.570013 5:-73164122 None:intergenic
AGAGTTCTATCTAGTGGCAT+GGG 0.571631 5:-73161235 None:intergenic
ATGTGGCGGTGATTATGGAC+GGG 0.576395 5:+73161482 MsG0580028013.01.T01:CDS
TGTAAAGTCGTTGAGAAGGA+TGG 0.579930 5:+73161561 MsG0580028013.01.T01:CDS
GGCTACATGACCCGCAGACG+GGG 0.586275 5:-73161536 None:intergenic
CATGTGGCGGTGATTATGGA+CGG 0.587809 5:+73161481 MsG0580028013.01.T01:CDS
GTTATAAGAGTTCTATCTAG+TGG 0.591644 5:-73161241 None:intergenic
CGGCTAATGTGGGAAATGGA+AGG 0.592085 5:-73161157 None:intergenic
CTGAAATTGAAGCACTAGAG+AGG 0.594486 5:+73161815 MsG0580028013.01.T01:CDS
ATTGCCGGAGGAACTGCAAG+CGG 0.596025 5:+73161444 MsG0580028013.01.T01:CDS
GTAGTAGTAGTCATCTTTGG+TGG 0.604592 5:-73161268 None:intergenic
TGATTATGGACGGGAATGGG+AGG 0.615382 5:+73161491 MsG0580028013.01.T01:CDS
CCGGCTACATGACCCGCAGA+CGG 0.616650 5:-73161538 None:intergenic
CCGGTGTAAAGTCGTTGAGA+AGG 0.624155 5:+73161557 MsG0580028013.01.T01:CDS
AGTCGTTGAGAAGGATGGTG+AGG 0.625194 5:+73161566 MsG0580028013.01.T01:CDS
GGAGCTGATGCCTAAGCATG+TGG 0.626089 5:+73161465 MsG0580028013.01.T01:CDS
GATAACGATTCGGCTAATGT+GGG 0.631394 5:-73161167 None:intergenic
AGAAATGGAGCCATTGCCGG+AGG 0.635367 5:+73161432 MsG0580028013.01.T01:CDS
GGTGGATGGGGAAACTTCCG+TGG 0.636917 5:+73161396 MsG0580028013.01.T01:CDS
CCTTCTCAACGACTTTACAC+CGG 0.638232 5:-73161557 None:intergenic
TAGTGCTGAGGAGAGTACAA+AGG 0.639099 5:+73163907 MsG0580028013.01.T01:CDS
GTAGCCAAGAAAGTGCAAGA+TGG 0.652351 5:+73164004 MsG0580028013.01.T01:CDS
TGGTCCGTATTAGTAAATCC+GGG 0.652721 5:-73164102 None:intergenic
CCACTAACCACCCTCATCGG+GGG 0.665764 5:+73161290 MsG0580028013.01.T01:CDS
GCTACATGACCCGCAGACGG+GGG 0.669075 5:-73161535 None:intergenic
ACCACTAACCACCCTCATCG+GGG 0.670600 5:+73161289 MsG0580028013.01.T01:CDS
AAGTATGATAGCTAGTGCTG+AGG 0.671510 5:+73163895 MsG0580028013.01.T01:CDS
CTAATGTGGGAAATGGAAGG+TGG 0.674900 5:-73161154 None:intergenic
CACCTGATCCTGAAAAGCTG+CGG 0.703606 5:-73161377 None:intergenic
GATTTACTAATACGGACCAG+TGG 0.708808 5:+73164106 MsG0580028013.01.T01:CDS
GCTGATGCCTAAGCATGTGG+CGG 0.712093 5:+73161468 MsG0580028013.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATAATAATAATAAAA+AGG - Chr5:73162201-73162220 None:intergenic 0.0%
!!! AATTAATATATATATTTTTT+AGG + Chr5:73162359-73162378 MsG0580028013.01.T01:intron 0.0%
!!! ATTAATATATATATTTTTTA+GGG + Chr5:73162360-73162379 MsG0580028013.01.T01:intron 0.0%
!! AAATGAAAATATTATTGAAA+AGG + Chr5:73164048-73164067 MsG0580028013.01.T01:CDS 10.0%
!! AGAAAATAATTACTAAATTA+AGG + Chr5:73163050-73163069 MsG0580028013.01.T01:intron 10.0%
!!! ATATCTATATATTTTTTGAA+AGG - Chr5:73162276-73162295 None:intergenic 10.0%
!!! CAACAAAATATTTTAAAATA+TGG - Chr5:73162143-73162162 None:intergenic 10.0%
!!! TTCTTTTTTTTTTTTTTTTG+TGG - Chr5:73162642-73162661 None:intergenic 10.0%
!! AAACTACTTGTAATAAATAA+TGG - Chr5:73161880-73161899 None:intergenic 15.0%
!! ATAATTACTAAATTAAGGAA+AGG + Chr5:73163055-73163074 MsG0580028013.01.T01:intron 15.0%
!! TAATTACTAAATTAAGGAAA+GGG + Chr5:73163056-73163075 MsG0580028013.01.T01:intron 15.0%
!!! AGAGTATTTTTTTTTTCTAT+AGG + Chr5:73163144-73163163 MsG0580028013.01.T01:intron 15.0%
!!! TCTCAATATAAATGTTTTTA+AGG - Chr5:73162836-73162855 None:intergenic 15.0%
!!! TTATTCTTAGTTTTGATTAT+TGG + Chr5:73161727-73161746 MsG0580028013.01.T01:intron 15.0%
!!! TTTTCTTTAATAGAAAACTT+TGG + Chr5:73164179-73164198 MsG0580028013.01.T01:CDS 15.0%
!!! TTTTTTTGAGAAAATTATTG+TGG + Chr5:73164387-73164406 MsG0580028013.01.T01:three_prime_UTR 15.0%
!!! TTTTTTTTTTTTTTTTGTGG+TGG - Chr5:73162639-73162658 None:intergenic 15.0%
!! AATTACTAAATTAAGGAAAG+GGG + Chr5:73163057-73163076 MsG0580028013.01.T01:intron 20.0%
!! AATTTATTGTTCTTTCAAAG+AGG - Chr5:73161795-73161814 None:intergenic 20.0%
!! ATGTAAGATCACTTAATATA+AGG - Chr5:73163463-73163482 None:intergenic 20.0%
!! GTATATATAAATGTCTCTTA+AGG - Chr5:73162596-73162615 None:intergenic 20.0%
!! TGTAAGATCACTTAATATAA+GGG - Chr5:73163462-73163481 None:intergenic 20.0%
!! TGTTAGTAATAATGTGAATA+TGG - Chr5:73161198-73161217 None:intergenic 20.0%
!! TTTATATATACTGAGATGAA+TGG + Chr5:73162605-73162624 MsG0580028013.01.T01:intron 20.0%
!!! AAGTCTTATTGTATTTATTG+TGG + Chr5:73164359-73164378 MsG0580028013.01.T01:three_prime_UTR 20.0%
!!! AATATGTCACTTAATATAAG+GGG - Chr5:73163787-73163806 None:intergenic 20.0%
!!! ATGTTGATAACTTTTTCAAT+AGG + Chr5:73163213-73163232 MsG0580028013.01.T01:intron 20.0%
!!! GAATATGTCACTTAATATAA+GGG - Chr5:73163788-73163807 None:intergenic 20.0%
!!! TGAATATGTCACTTAATATA+AGG - Chr5:73163789-73163808 None:intergenic 20.0%
!!! TGTTGATAACTTTTTCAATA+GGG + Chr5:73163214-73163233 MsG0580028013.01.T01:intron 20.0%
! AATAAATACCACAACCATAT+TGG - Chr5:73164307-73164326 None:intergenic 25.0%
! AATTACTTAAAGCAGTCATA+GGG - Chr5:73162417-73162436 None:intergenic 25.0%
! ACTTAATATAAGGGGAAAAA+AGG - Chr5:73163453-73163472 None:intergenic 25.0%
! AGTGAAATTAAAATGACCTT+AGG - Chr5:73161658-73161677 None:intergenic 25.0%
! ATGACATTAGTTATTGATAG+TGG + Chr5:73161704-73161723 MsG0580028013.01.T01:intron 25.0%
! CATATACTTATTCTCCAATA+TGG + Chr5:73164290-73164309 MsG0580028013.01.T01:three_prime_UTR 25.0%
! CATATTGGAGAATAAGTATA+TGG - Chr5:73164292-73164311 None:intergenic 25.0%
! GAAAAAAAAAATACTCTCTC+TGG - Chr5:73163141-73163160 None:intergenic 25.0%
! GTAAGATCACTTAATATAAG+GGG - Chr5:73163461-73163480 None:intergenic 25.0%
! TAATTACTTAAAGCAGTCAT+AGG - Chr5:73162418-73162437 None:intergenic 25.0%
! TCTTGAGTATAAAAAACGAA+AGG - Chr5:73163118-73163137 None:intergenic 25.0%
!! ATCATACTTTTCAATGACTT+GGG - Chr5:73163884-73163903 None:intergenic 25.0%
!! CTATAGGTATTTTTCATTAG+AGG + Chr5:73163160-73163179 MsG0580028013.01.T01:intron 25.0%
!! TAATTTCTTGTTATGGCAAT+TGG + Chr5:73164144-73164163 MsG0580028013.01.T01:CDS 25.0%
!! TATCATACTTTTCAATGACT+TGG - Chr5:73163885-73163904 None:intergenic 25.0%
!!! TACCAAATTCCATCTTATTT+TGG + Chr5:73163934-73163953 MsG0580028013.01.T01:CDS 25.0%
!!! TCTATTTTGGAATGAAGTTA+AGG - Chr5:73164236-73164255 None:intergenic 25.0%
AACAAATAACCAATGTGAGT+TGG - Chr5:73163626-73163645 None:intergenic 30.0%
AACACCATTTGCTTTGTAAT+AGG + Chr5:73163816-73163835 MsG0580028013.01.T01:intron 30.0%
ACAAATAACCAATGTGAGTT+GGG - Chr5:73163625-73163644 None:intergenic 30.0%
ACACCATTTGCTTTGTAATA+GGG + Chr5:73163817-73163836 MsG0580028013.01.T01:intron 30.0%
ATAATTTCCCTGTCAAAAAG+AGG - Chr5:73162809-73162828 None:intergenic 30.0%
ATGGTTGTGGTATTTATTGT+GGG + Chr5:73164309-73164328 MsG0580028013.01.T01:three_prime_UTR 30.0%
ATTACTTAAAGCAGTCATAG+GGG - Chr5:73162416-73162435 None:intergenic 30.0%
GGAATTCAAATATCTGTGAT+TGG + Chr5:73163842-73163861 MsG0580028013.01.T01:CDS 30.0%
GTTATAAGAGTTCTATCTAG+TGG - Chr5:73161244-73161263 None:intergenic 30.0%
TACCTCTAATGACAAAGTAA+TGG - Chr5:73163510-73163529 None:intergenic 30.0%
TATGGTTGTGGTATTTATTG+TGG + Chr5:73164308-73164327 MsG0580028013.01.T01:three_prime_UTR 30.0%
TGCCAAAATAAGATGGAATT+TGG - Chr5:73163939-73163958 None:intergenic 30.0%
! AAAACACTGTGTTTTCTTCT+TGG + Chr5:73162916-73162935 MsG0580028013.01.T01:intron 30.0%
! AGTGATGCATTGATATTGTA+GGG + Chr5:73162056-73162075 MsG0580028013.01.T01:intron 30.0%
! GGGTTAGTAATTTCTTGTTA+TGG + Chr5:73164137-73164156 MsG0580028013.01.T01:CDS 30.0%
! TAGTGATGCATTGATATTGT+AGG + Chr5:73162055-73162074 MsG0580028013.01.T01:intron 30.0%
! TATGGTTAGTGATAACGATT+CGG - Chr5:73161180-73161199 None:intergenic 30.0%
! TCATACTTTTCAATGACTTG+GGG - Chr5:73163883-73163902 None:intergenic 30.0%
! TGTATAACCTCTTTTTGACA+GGG + Chr5:73162799-73162818 MsG0580028013.01.T01:intron 30.0%
! TTGTATAACCTCTTTTTGAC+AGG + Chr5:73162798-73162817 MsG0580028013.01.T01:intron 30.0%
!!! GTTTTGATTATTGGTGTTAC+TGG + Chr5:73161736-73161755 MsG0580028013.01.T01:intron 30.0%
AACAAATAACCAACGTGAGT+TGG - Chr5:73163297-73163316 None:intergenic 35.0%
AACTCATCCTTTCCAAAATC+TGG - Chr5:73164205-73164224 None:intergenic 35.0%
AGCTTACTGCCAAAATAAGA+TGG - Chr5:73163946-73163965 None:intergenic 35.0%
CACCATTACTTTGTCATTAG+AGG + Chr5:73163505-73163524 MsG0580028013.01.T01:intron 35.0%
CATTTGCTTTGTAATAGGGA+AGG + Chr5:73163821-73163840 MsG0580028013.01.T01:intron 35.0%
CTCATTCTCGATATTCTTCA+AGG + Chr5:73161329-73161348 MsG0580028013.01.T01:CDS 35.0%
CTTACCCGGATTTACTAATA+CGG + Chr5:73164098-73164117 MsG0580028013.01.T01:CDS 35.0%
CTTAGGTCGAATCCAATTAT+CGG - Chr5:73161641-73161660 None:intergenic 35.0%
CTTATTCTCCAATATGGTTG+TGG + Chr5:73164296-73164315 MsG0580028013.01.T01:three_prime_UTR 35.0%
CTTCCCTATTACAAAGCAAA+TGG - Chr5:73163823-73163842 None:intergenic 35.0%
GCAAGATGGCATTATTCATT+TGG + Chr5:73164018-73164037 MsG0580028013.01.T01:CDS 35.0%
GTGTTATAGTTGGGGAATAA+AGG + Chr5:73161591-73161610 MsG0580028013.01.T01:CDS 35.0%
TTGCATTCTCAACCGATAAT+TGG + Chr5:73161626-73161645 MsG0580028013.01.T01:CDS 35.0%
TTGTACAGAATTTCCTTACC+CGG + Chr5:73164084-73164103 MsG0580028013.01.T01:CDS 35.0%
! AACACACTGTGTTTTCTTCT+TGG + Chr5:73163022-73163041 MsG0580028013.01.T01:intron 35.0%
! AGAAAACTTTGGCCAGATTT+TGG + Chr5:73164190-73164209 MsG0580028013.01.T01:CDS 35.0%
! CAAAACGTCTCTGTCTATTT+TGG - Chr5:73164249-73164268 None:intergenic 35.0%
! CAAAATAGACAGAGACGTTT+TGG + Chr5:73164247-73164266 MsG0580028013.01.T01:CDS 35.0%
! TTCTGAAAAATCTTCGTCCA+CGG - Chr5:73161416-73161435 None:intergenic 35.0%
!! ATTTTGGCAGTAAGCTATAG+TGG + Chr5:73163950-73163969 MsG0580028013.01.T01:CDS 35.0%
!! GGACGAAGATTTTTCAGAAA+TGG + Chr5:73161417-73161436 MsG0580028013.01.T01:CDS 35.0%
AAGAGTTCTATCTAGTGGCA+TGG - Chr5:73161239-73161258 None:intergenic 40.0%
AAGTATGATAGCTAGTGCTG+AGG + Chr5:73163895-73163914 MsG0580028013.01.T01:CDS 40.0%
AATGCCATCTTGCACTTTCT+TGG - Chr5:73164011-73164030 None:intergenic 40.0%
ACTGATTGACATCACATGCT+TGG - Chr5:73163671-73163690 None:intergenic 40.0%
AGAGTTCTATCTAGTGGCAT+GGG - Chr5:73161238-73161257 None:intergenic 40.0%
CAATGCTTTGATTCATCGCA+TGG + Chr5:73163574-73163593 MsG0580028013.01.T01:intron 40.0%
CGATAATTGGATTCGACCTA+AGG + Chr5:73161639-73161658 MsG0580028013.01.T01:CDS 40.0%
CGTATTAGTAAATCCGGGTA+AGG - Chr5:73164100-73164119 None:intergenic 40.0%
CTGGTCCGTATTAGTAAATC+CGG - Chr5:73164106-73164125 None:intergenic 40.0%
GATTTACTAATACGGACCAG+TGG + Chr5:73164106-73164125 MsG0580028013.01.T01:CDS 40.0%
GGTGAGGTTGTGTTATAGTT+GGG + Chr5:73161582-73161601 MsG0580028013.01.T01:CDS 40.0%
GTAGTAGTAGTCATCTTTGG+TGG - Chr5:73161271-73161290 None:intergenic 40.0%
GTGAGGTTGTGTTATAGTTG+GGG + Chr5:73161583-73161602 MsG0580028013.01.T01:CDS 40.0%
GTGGTAGTAGTAGTCATCTT+TGG - Chr5:73161274-73161293 None:intergenic 40.0%
TGGTCCGTATTAGTAAATCC+GGG - Chr5:73164105-73164124 None:intergenic 40.0%
TGGTGAGGTTGTGTTATAGT+TGG + Chr5:73161581-73161600 MsG0580028013.01.T01:CDS 40.0%
TGTAAAGTCGTTGAGAAGGA+TGG + Chr5:73161561-73161580 MsG0580028013.01.T01:CDS 40.0%
! AATAGACAGAGACGTTTTGG+TGG + Chr5:73164250-73164269 MsG0580028013.01.T01:CDS 40.0%
! CTGAAATTGAAGCACTAGAG+AGG + Chr5:73161815-73161834 MsG0580028013.01.T01:CDS 40.0%
! GATAACGATTCGGCTAATGT+GGG - Chr5:73161170-73161189 None:intergenic 40.0%
! TGATAACGATTCGGCTAATG+TGG - Chr5:73161171-73161190 None:intergenic 40.0%
!! ACTTTGGCCAGATTTTGGAA+AGG + Chr5:73164195-73164214 MsG0580028013.01.T01:CDS 40.0%
ACTAACCCTAAGTTCTCCAC+TGG - Chr5:73164125-73164144 None:intergenic 45.0%
ATAATCACCGCCACATGCTT+AGG - Chr5:73161478-73161497 None:intergenic 45.0%
ATGCTAGACCCAACTCACAT+TGG + Chr5:73163614-73163633 MsG0580028013.01.T01:intron 45.0%
CCTTCTCAACGACTTTACAC+CGG - Chr5:73161560-73161579 None:intergenic 45.0%
CTAATGTGGGAAATGGAAGG+TGG - Chr5:73161157-73161176 None:intergenic 45.0%
GATTCGGCTAATGTGGGAAA+TGG - Chr5:73161164-73161183 None:intergenic 45.0%
TAAGCATGTGGCGGTGATTA+TGG + Chr5:73161477-73161496 MsG0580028013.01.T01:CDS 45.0%
TGTTACTGGTGATATGCAGG+TGG + Chr5:73161750-73161769 MsG0580028013.01.T01:intron 45.0%
TTCAGAAATGGAGCCATTGC+CGG + Chr5:73161429-73161448 MsG0580028013.01.T01:CDS 45.0%
! GTAGCCAAGAAAGTGCAAGA+TGG + Chr5:73164004-73164023 MsG0580028013.01.T01:CDS 45.0%
! TAGTGCTGAGGAGAGTACAA+AGG + Chr5:73163907-73163926 MsG0580028013.01.T01:CDS 45.0%
! TGGCTACACTTTTGCATGCT+TGG - Chr5:73163991-73164010 None:intergenic 45.0%
! TGTGAGTTGGGTCTAGCATA+AGG - Chr5:73163613-73163632 None:intergenic 45.0%
!! AACCAACGTGAGTTGGTTCT+GGG - Chr5:73163290-73163309 None:intergenic 45.0%
!! CTTTTCAGGATCAGGTGGAT+GGG + Chr5:73161383-73161402 MsG0580028013.01.T01:CDS 45.0%
!! TAACCAACGTGAGTTGGTTC+TGG - Chr5:73163291-73163310 None:intergenic 45.0%
!! TGGTGTTACTGGTGATATGC+AGG + Chr5:73161747-73161766 MsG0580028013.01.T01:intron 45.0%
!! TTTTCAGGATCAGGTGGATG+GGG + Chr5:73161384-73161403 MsG0580028013.01.T01:CDS 45.0%
!!! CTTTTTTTTAAAAAAAAAAT+TGG + Chr5:73162706-73162725 MsG0580028013.01.T01:intron 5.0%
!!! GAATTATTTTTTTAAAAAAA+AGG + Chr5:73162503-73162522 MsG0580028013.01.T01:intron 5.0%
!!! TTAATATATATATTTTTTAG+GGG + Chr5:73162361-73162380 MsG0580028013.01.T01:intron 5.0%
!!! TTATTATTATTATTTTTGAA+TGG - Chr5:73162301-73162320 None:intergenic 5.0%
ACGGACCAGTGGAGAACTTA+GGG + Chr5:73164117-73164136 MsG0580028013.01.T01:CDS 50.0%
AGTCGTTGAGAAGGATGGTG+AGG + Chr5:73161566-73161585 MsG0580028013.01.T01:CDS 50.0%
ATGTGGCGGTGATTATGGAC+GGG + Chr5:73161482-73161501 MsG0580028013.01.T01:CDS 50.0%
CACCTGATCCTGAAAAGCTG+CGG - Chr5:73161380-73161399 None:intergenic 50.0%
CATGTGGCGGTGATTATGGA+CGG + Chr5:73161481-73161500 MsG0580028013.01.T01:CDS 50.0%
CCGGTGTAAAGTCGTTGAGA+AGG + Chr5:73161557-73161576 MsG0580028013.01.T01:CDS 50.0%
CGGCTAATGTGGGAAATGGA+AGG - Chr5:73161160-73161179 None:intergenic 50.0%
CGGTGATTATGGACGGGAAT+GGG + Chr5:73161488-73161507 MsG0580028013.01.T01:CDS 50.0%
CTACCACTAACCACCCTCAT+CGG + Chr5:73161287-73161306 MsG0580028013.01.T01:CDS 50.0%
TACCACTAACCACCCTCATC+GGG + Chr5:73161288-73161307 MsG0580028013.01.T01:CDS 50.0%
TACGGACCAGTGGAGAACTT+AGG + Chr5:73164116-73164135 MsG0580028013.01.T01:CDS 50.0%
TGATTATGGACGGGAATGGG+AGG + Chr5:73161491-73161510 MsG0580028013.01.T01:CDS 50.0%
! CACTATTGCCGCAGCTTTTC+AGG + Chr5:73161369-73161388 MsG0580028013.01.T01:CDS 50.0%
!! GCTTTTCAGGATCAGGTGGA+TGG + Chr5:73161382-73161401 MsG0580028013.01.T01:CDS 50.0%
!! TTGGTTCTGGGTCTAGCAGA+AGG - Chr5:73163278-73163297 None:intergenic 50.0%
ACCACTAACCACCCTCATCG+GGG + Chr5:73161289-73161308 MsG0580028013.01.T01:CDS 55.0%
AGAAATGGAGCCATTGCCGG+AGG + Chr5:73161432-73161451 MsG0580028013.01.T01:CDS 55.0%
ATCTGAGTGATCCCCCGATG+AGG - Chr5:73161304-73161323 None:intergenic 55.0%
ATGGGAGGTGGGCAAAGATG+AGG + Chr5:73161506-73161525 MsG0580028013.01.T01:CDS 55.0%
ATTGCCGGAGGAACTGCAAG+CGG + Chr5:73161444-73161463 MsG0580028013.01.T01:CDS 55.0%
GACCCAGAACCAACTCACGT+TGG + Chr5:73163285-73163304 MsG0580028013.01.T01:intron 55.0%
GCGGTGATTATGGACGGGAA+TGG + Chr5:73161487-73161506 MsG0580028013.01.T01:CDS 55.0%
GCTGATGCCTAAGCATGTGG+CGG + Chr5:73161468-73161487 MsG0580028013.01.T01:CDS 55.0%
GGAGCTGATGCCTAAGCATG+TGG + Chr5:73161465-73161484 MsG0580028013.01.T01:CDS 55.0%
TATGGACGGGAATGGGAGGT+GGG + Chr5:73161495-73161514 MsG0580028013.01.T01:CDS 55.0%
TCTGAGTGATCCCCCGATGA+GGG - Chr5:73161303-73161322 None:intergenic 55.0%
TGCGGCAATAGTGACGCGTT+TGG - Chr5:73161362-73161381 None:intergenic 55.0%
TGGGAGGTGGGCAAAGATGA+GGG + Chr5:73161507-73161526 MsG0580028013.01.T01:CDS 55.0%
TTATGGACGGGAATGGGAGG+TGG + Chr5:73161494-73161513 MsG0580028013.01.T01:CDS 55.0%
!! CGCAGCTTTTCAGGATCAGG+TGG + Chr5:73161378-73161397 MsG0580028013.01.T01:CDS 55.0%
!! TGCCGCAGCTTTTCAGGATC+AGG + Chr5:73161375-73161394 MsG0580028013.01.T01:CDS 55.0%
AGCTCCGCTTGCAGTTCCTC+CGG - Chr5:73161451-73161470 None:intergenic 60.0%
CCACTAACCACCCTCATCGG+GGG + Chr5:73161290-73161309 MsG0580028013.01.T01:CDS 60.0%
GCTTGCAGTTCCTCCGGCAA+TGG - Chr5:73161445-73161464 None:intergenic 60.0%
GGAGGTGGGCAAAGATGAGG+GGG + Chr5:73161509-73161528 MsG0580028013.01.T01:CDS 60.0%
GGGAGGTGGGCAAAGATGAG+GGG + Chr5:73161508-73161527 MsG0580028013.01.T01:CDS 60.0%
GGTGGATGGGGAAACTTCCG+TGG + Chr5:73161396-73161415 MsG0580028013.01.T01:CDS 60.0%
CCCCCGATGAGGGTGGTTAG+TGG - Chr5:73161293-73161312 None:intergenic 65.0%
CCGGCTACATGACCCGCAGA+CGG - Chr5:73161541-73161560 None:intergenic 65.0%
CCGTCTGCGGGTCATGTAGC+CGG + Chr5:73161538-73161557 MsG0580028013.01.T01:CDS 65.0%
CGGCTACATGACCCGCAGAC+GGG - Chr5:73161540-73161559 None:intergenic 65.0%
GAGTGATCCCCCGATGAGGG+TGG - Chr5:73161300-73161319 None:intergenic 65.0%
GCTACATGACCCGCAGACGG+GGG - Chr5:73161538-73161557 None:intergenic 65.0%
GGCTACATGACCCGCAGACG+GGG - Chr5:73161539-73161558 None:intergenic 65.0%
AGGGGGTTACCCCCGTCTGC+GGG + Chr5:73161526-73161545 MsG0580028013.01.T01:CDS 70.0%
GAGGGGGTTACCCCCGTCTG+CGG + Chr5:73161525-73161544 MsG0580028013.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 73161136 73164443 73161136 ID=MsG0580028013.01;Name=MsG0580028013.01
Chr5 mRNA 73161136 73164443 73161136 ID=MsG0580028013.01.T01;Parent=MsG0580028013.01;Name=MsG0580028013.01.T01;_AED=0.32;_eAED=0.32;_QI=81|1|1|1|1|1|3|161|318
Chr5 exon 73161136 73161660 73161136 ID=MsG0580028013.01.T01:exon:45199;Parent=MsG0580028013.01.T01
Chr5 exon 73161769 73161836 73161769 ID=MsG0580028013.01.T01:exon:45200;Parent=MsG0580028013.01.T01
Chr5 exon 73163838 73164443 73163838 ID=MsG0580028013.01.T01:exon:45201;Parent=MsG0580028013.01.T01
Chr5 five_prime_UTR 73161136 73161216 73161136 ID=MsG0580028013.01.T01:five_prime_utr;Parent=MsG0580028013.01.T01
Chr5 CDS 73161217 73161660 73161217 ID=MsG0580028013.01.T01:cds;Parent=MsG0580028013.01.T01
Chr5 CDS 73161769 73161836 73161769 ID=MsG0580028013.01.T01:cds;Parent=MsG0580028013.01.T01
Chr5 CDS 73163838 73164282 73163838 ID=MsG0580028013.01.T01:cds;Parent=MsG0580028013.01.T01
Chr5 three_prime_UTR 73164283 73164443 73164283 ID=MsG0580028013.01.T01:three_prime_utr;Parent=MsG0580028013.01.T01
Gene Sequence

>MsG0580028013.01.T01

ATGTTTTCTTTAAGACTTCCCATGCCACTAGATAGAACTCTTATAACTTGTCCACCAAAGATGACTACTACTACCACTAACCACCCTCATCGGGGGATCACTCAGATACAAACTCATTCTCGATATTCTTCAAGGTTTGTTACCAAACGCGTCACTATTGCCGCAGCTTTTCAGGATCAGGTGGATGGGGAAACTTCCGTGGACGAAGATTTTTCAGAAATGGAGCCATTGCCGGAGGAACTGCAAGCGGAGCTGATGCCTAAGCATGTGGCGGTGATTATGGACGGGAATGGGAGGTGGGCAAAGATGAGGGGGTTACCCCCGTCTGCGGGTCATGTAGCCGGTGTAAAGTCGTTGAGAAGGATGGTGAGGTTGTGTTATAGTTGGGGAATAAAGGTTCTAACTGTTTTTGCATTCTCAACCGATAATTGGATTCGACCTAAGGTGGAAGTTGAATTTTTGATGAGCCTCTTTGAAAGAACAATAAATTCTGAAATTGAAGCACTAGAGAGGGAAGGAATTCAAATATCTGTGATTGGAGATACATCAAAGCTCCCCAAGTCATTGAAAAGTATGATAGCTAGTGCTGAGGAGAGTACAAAGGATAATACCAAATTCCATCTTATTTTGGCAGTAAGCTATAGTGGAAAATACGATTTAGTCCAAGCATGCAAAAGTGTAGCCAAGAAAGTGCAAGATGGCATTATTCATTTGGAAGACATAAATGAAAATATTATTGAAAAGGAATTAGAAACTAATTGTACAGAATTTCCTTACCCGGATTTACTAATACGGACCAGTGGAGAACTTAGGGTTAGTAATTTCTTGTTATGGCAATTGGCATATACAGAACTTTTCTTTAATAGAAAACTTTGGCCAGATTTTGGAAAGGATGAGTTTGTAGAAGCCTTAACTTCATTCCAAAATAGACAGAGACGTTTTGGTGGACGATATTAA

Protein sequence

>MsG0580028013.01.T01

MFSLRLPMPLDRTLITCPPKMTTTTTNHPHRGITQIQTHSRYSSRFVTKRVTIAAAFQDQVDGETSVDEDFSEMEPLPEELQAELMPKHVAVIMDGNGRWAKMRGLPPSAGHVAGVKSLRRMVRLCYSWGIKVLTVFAFSTDNWIRPKVEVEFLMSLFERTINSEIEALEREGIQISVIGDTSKLPKSLKSMIASAEESTKDNTKFHLILAVSYSGKYDLVQACKSVAKKVQDGIIHLEDINENIIEKELETNCTEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFNRKLWPDFGKDEFVEALTSFQNRQRRFGGRY*